organic compounds
3-Chloro-N-(4-hydroxy-3-methoxybenzyl)-2,2-dimethylpropanamide
aCollege of Chemical Engineering and Materials Science, Zhejiang University of Technology, People's Republic of China
*Correspondence e-mail: shanshang@mail.hz.zj.cn
In the molecular structure of the title compound, C13H18ClNO3, the amide group is nearly perpendicular to the benzene ring, making a dihedral angle of 85.66 (9)°. The C=O bond distance of 1.242 (3) Å and the C—N bond distance of 1.333 (3) Å suggest electron delocalization in the amide fragment. Intermolecular O—H⋯O and N—H⋯O hydrogen bonding helps to stabilize the crystal structure.
Related literature
The title compound is a derivative of capsaicin. For the biological activity of capsaicin, see: Kaga et al. (1989). For a related structure, see: Xia et al. (2009).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: PROCESS-AUTO (Rigaku, 1998); cell PROCESS-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2002); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536810009529/xu2733sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810009529/xu2733Isup2.hkl
4-Hydroxy-3-methoxy benzylamine HCl salt (4.7 g, 25 mmol) and dimethylformamide (25 ml) were added to a 100 ml 3-necked flask equipped with an additional funnel, a thermometer and a magnetic stirrer. Water solution (10 ml) of NaOH (2.0 g) was added at room temperature. The mixture was stirred at 308 K for 30 min and then cooled to 273 K. An ether solution (10 ml) of 2,2-dimethyl-3-chloropropionyl chloride (3.9 g, 25 mmol) was added dropwise at about 273 K over 15 min. After stirred for 2 h at room temperature the mixture was poured into 1M HCl solution (120 ml) , and then extracted with ethyl acetate. The ethyl acetate extract was washed with saturated NaHCO3 and brine. The extract was then dried over anhydrous Na2SO4 and filtered. Solvents were removed under vacuum at about 308 K to give a solid crude. Recrystallization was performed twice with an absolute ethyl acetate to obtain colourless single crystals of the title compound.
Hydroxy and imino H atoms were located in a difference Fourier map and were refined as riding in as-found relative positions with Uiso(H) = 1.5Ueq(N,O). Methyl H atoms were placed in calculated positions with C—H = 0.96 Å and torsion angle was refined to fit the electron density, Uiso(H) = 1.5Ueq(C). Other H atoms were placed in calculated positions with C—H = 0.93 (aromatic) and 0.97 Å (methylene), and refined in riding mode with Uiso(H) = 1.2Ueq(C).
Data collection: PROCESS-AUTO (Rigaku, 1998); cell
PROCESS-AUTO (Rigaku, 1998); data reduction: CrystalStructure (Rigaku/MSC, 2002); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. The molecular structure of the title compound with 30% probability displacement (arbitrary spheres for H atoms). |
C13H18ClNO3 | F(000) = 576 |
Mr = 271.73 | Dx = 1.284 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 3466 reflections |
a = 9.3074 (10) Å | θ = 2.2–24.0° |
b = 11.5585 (13) Å | µ = 0.27 mm−1 |
c = 13.0652 (14) Å | T = 294 K |
β = 90.378 (4)° | Prism, colorless |
V = 1405.5 (3) Å3 | 0.40 × 0.38 × 0.32 mm |
Z = 4 |
Rigaku R-AXIS RAPID IP diffractometer | 2254 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.042 |
Graphite monochromator | θmax = 26.0°, θmin = 2.2° |
Detector resolution: 10.0 pixels mm-1 | h = −10→11 |
ω scans | k = −13→14 |
15383 measured reflections | l = −16→16 |
2732 independent reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.060 | H-atom parameters constrained |
wR(F2) = 0.167 | w = 1/[σ2(Fo2) + (0.0726P)2 + 1.051P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.002 |
2732 reflections | Δρmax = 0.48 e Å−3 |
167 parameters | Δρmin = −0.67 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.021 (3) |
C13H18ClNO3 | V = 1405.5 (3) Å3 |
Mr = 271.73 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 9.3074 (10) Å | µ = 0.27 mm−1 |
b = 11.5585 (13) Å | T = 294 K |
c = 13.0652 (14) Å | 0.40 × 0.38 × 0.32 mm |
β = 90.378 (4)° |
Rigaku R-AXIS RAPID IP diffractometer | 2254 reflections with I > 2σ(I) |
15383 measured reflections | Rint = 0.042 |
2732 independent reflections |
R[F2 > 2σ(F2)] = 0.060 | 0 restraints |
wR(F2) = 0.167 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.48 e Å−3 |
2732 reflections | Δρmin = −0.67 e Å−3 |
167 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.85692 (18) | 0.09530 (8) | 0.35770 (8) | 0.1195 (6) | |
N1 | 0.7804 (2) | 0.39529 (17) | 0.22613 (15) | 0.0410 (5) | |
H1N | 0.7416 | 0.4356 | 0.2801 | 0.061* | |
O1 | 0.18986 (18) | 0.14975 (16) | 0.13257 (15) | 0.0539 (5) | |
H1A | 0.1120 | 0.1961 | 0.1482 | 0.081* | |
O2 | 0.43484 (18) | 0.03920 (15) | 0.14718 (15) | 0.0542 (5) | |
O3 | 0.95555 (18) | 0.27805 (16) | 0.17024 (13) | 0.0509 (5) | |
C1 | 0.3123 (2) | 0.2148 (2) | 0.12573 (18) | 0.0409 (5) | |
C2 | 0.4447 (2) | 0.1577 (2) | 0.13548 (18) | 0.0404 (5) | |
C3 | 0.5709 (2) | 0.2199 (2) | 0.13426 (18) | 0.0431 (6) | |
H3 | 0.6581 | 0.1815 | 0.1422 | 0.052* | |
C4 | 0.5700 (2) | 0.3402 (2) | 0.12130 (17) | 0.0400 (5) | |
C5 | 0.4394 (3) | 0.3947 (2) | 0.10673 (19) | 0.0445 (6) | |
H5 | 0.4371 | 0.4741 | 0.0953 | 0.053* | |
C6 | 0.3112 (2) | 0.3327 (2) | 0.10891 (19) | 0.0451 (6) | |
H6 | 0.2243 | 0.3710 | 0.0990 | 0.054* | |
C7 | 0.5646 (3) | −0.0248 (2) | 0.1367 (2) | 0.0572 (7) | |
H7A | 0.6070 | −0.0079 | 0.0715 | 0.086* | |
H7B | 0.5441 | −0.1061 | 0.1409 | 0.086* | |
H7C | 0.6303 | −0.0036 | 0.1904 | 0.086* | |
C8 | 0.7093 (3) | 0.4073 (2) | 0.12661 (18) | 0.0445 (6) | |
H8A | 0.7732 | 0.3799 | 0.0735 | 0.053* | |
H8B | 0.6898 | 0.4885 | 0.1138 | 0.053* | |
C9 | 0.8956 (2) | 0.32899 (19) | 0.24198 (17) | 0.0371 (5) | |
C10 | 0.9530 (2) | 0.3193 (2) | 0.35204 (17) | 0.0410 (5) | |
C11 | 1.0014 (4) | 0.1958 (3) | 0.3707 (2) | 0.0669 (9) | |
H11A | 1.0419 | 0.1898 | 0.4391 | 0.080* | |
H11B | 1.0761 | 0.1761 | 0.3223 | 0.080* | |
C12 | 0.8444 (3) | 0.3548 (3) | 0.4336 (2) | 0.0599 (7) | |
H12A | 0.7575 | 0.3111 | 0.4245 | 0.090* | |
H12B | 0.8236 | 0.4358 | 0.4270 | 0.090* | |
H12C | 0.8838 | 0.3398 | 0.5003 | 0.090* | |
C13 | 1.0859 (4) | 0.3961 (3) | 0.3605 (2) | 0.0779 (11) | |
H13A | 1.1292 | 0.3865 | 0.4268 | 0.117* | |
H13B | 1.0586 | 0.4755 | 0.3513 | 0.117* | |
H13C | 1.1535 | 0.3746 | 0.3086 | 0.117* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.2206 (15) | 0.0570 (6) | 0.0811 (7) | −0.0548 (7) | 0.0203 (7) | −0.0059 (4) |
N1 | 0.0349 (10) | 0.0439 (11) | 0.0441 (11) | 0.0031 (8) | 0.0016 (8) | −0.0048 (8) |
O1 | 0.0314 (9) | 0.0475 (10) | 0.0829 (13) | 0.0019 (7) | 0.0038 (8) | −0.0097 (9) |
O2 | 0.0373 (9) | 0.0415 (10) | 0.0838 (13) | 0.0063 (7) | 0.0059 (8) | 0.0056 (9) |
O3 | 0.0412 (10) | 0.0648 (12) | 0.0466 (10) | 0.0112 (8) | 0.0010 (7) | −0.0106 (8) |
C1 | 0.0306 (12) | 0.0464 (13) | 0.0457 (12) | 0.0014 (9) | 0.0012 (9) | −0.0064 (10) |
C2 | 0.0361 (12) | 0.0403 (12) | 0.0447 (12) | 0.0060 (9) | 0.0018 (9) | 0.0004 (10) |
C3 | 0.0334 (12) | 0.0479 (14) | 0.0480 (13) | 0.0078 (10) | 0.0009 (10) | 0.0037 (10) |
C4 | 0.0360 (12) | 0.0466 (13) | 0.0374 (11) | 0.0020 (10) | −0.0009 (9) | 0.0024 (9) |
C5 | 0.0426 (14) | 0.0401 (13) | 0.0508 (14) | 0.0043 (10) | −0.0033 (11) | 0.0014 (10) |
C6 | 0.0323 (12) | 0.0461 (14) | 0.0568 (14) | 0.0087 (10) | −0.0050 (10) | −0.0034 (11) |
C7 | 0.0478 (15) | 0.0458 (15) | 0.0780 (19) | 0.0146 (12) | 0.0061 (13) | 0.0059 (13) |
C8 | 0.0395 (13) | 0.0484 (14) | 0.0455 (13) | −0.0005 (10) | 0.0000 (10) | 0.0066 (10) |
C9 | 0.0287 (11) | 0.0374 (11) | 0.0451 (12) | −0.0047 (9) | 0.0023 (9) | −0.0013 (9) |
C10 | 0.0382 (13) | 0.0419 (13) | 0.0429 (12) | −0.0041 (10) | −0.0008 (9) | −0.0005 (10) |
C11 | 0.086 (2) | 0.0616 (18) | 0.0531 (16) | 0.0212 (16) | −0.0002 (15) | 0.0045 (13) |
C12 | 0.0694 (19) | 0.0669 (18) | 0.0436 (14) | 0.0124 (15) | 0.0050 (12) | −0.0004 (12) |
C13 | 0.072 (2) | 0.102 (3) | 0.0593 (18) | −0.0448 (19) | −0.0166 (15) | 0.0090 (17) |
Cl1—C11 | 1.784 (4) | C6—H6 | 0.9300 |
N1—C9 | 1.333 (3) | C7—H7A | 0.9600 |
N1—C8 | 1.462 (3) | C7—H7B | 0.9600 |
N1—H1N | 0.9206 | C7—H7C | 0.9600 |
O1—C1 | 1.369 (3) | C8—H8A | 0.9700 |
O1—H1A | 0.9252 | C8—H8B | 0.9700 |
O2—C2 | 1.382 (3) | C9—C10 | 1.535 (3) |
O2—C7 | 1.424 (3) | C10—C11 | 1.516 (4) |
O3—C9 | 1.242 (3) | C10—C13 | 1.526 (4) |
C1—C6 | 1.380 (4) | C10—C12 | 1.530 (3) |
C1—C2 | 1.403 (3) | C11—H11A | 0.9700 |
C2—C3 | 1.378 (3) | C11—H11B | 0.9700 |
C3—C4 | 1.400 (3) | C12—H12A | 0.9600 |
C3—H3 | 0.9300 | C12—H12B | 0.9600 |
C4—C5 | 1.381 (3) | C12—H12C | 0.9600 |
C4—C8 | 1.512 (3) | C13—H13A | 0.9600 |
C5—C6 | 1.392 (3) | C13—H13B | 0.9600 |
C5—H5 | 0.9300 | C13—H13C | 0.9600 |
C9—N1—C8 | 123.50 (19) | C4—C8—H8A | 109.2 |
C9—N1—H1N | 119.4 | N1—C8—H8B | 109.2 |
C8—N1—H1N | 117.1 | C4—C8—H8B | 109.2 |
C1—O1—H1A | 110.5 | H8A—C8—H8B | 107.9 |
C2—O2—C7 | 116.58 (19) | O3—C9—N1 | 121.3 (2) |
O1—C1—C6 | 123.2 (2) | O3—C9—C10 | 121.1 (2) |
O1—C1—C2 | 117.8 (2) | N1—C9—C10 | 117.55 (19) |
C6—C1—C2 | 119.0 (2) | C11—C10—C13 | 107.3 (3) |
C3—C2—O2 | 125.2 (2) | C11—C10—C12 | 109.7 (2) |
C3—C2—C1 | 120.2 (2) | C13—C10—C12 | 109.5 (2) |
O2—C2—C1 | 114.7 (2) | C11—C10—C9 | 108.7 (2) |
C2—C3—C4 | 121.0 (2) | C13—C10—C9 | 107.60 (19) |
C2—C3—H3 | 119.5 | C12—C10—C9 | 113.9 (2) |
C4—C3—H3 | 119.5 | C10—C11—Cl1 | 112.0 (2) |
C5—C4—C3 | 118.3 (2) | C10—C11—H11A | 109.2 |
C5—C4—C8 | 121.7 (2) | Cl1—C11—H11A | 109.2 |
C3—C4—C8 | 119.9 (2) | C10—C11—H11B | 109.2 |
C4—C5—C6 | 121.1 (2) | Cl1—C11—H11B | 109.2 |
C4—C5—H5 | 119.5 | H11A—C11—H11B | 107.9 |
C6—C5—H5 | 119.5 | C10—C12—H12A | 109.5 |
C1—C6—C5 | 120.4 (2) | C10—C12—H12B | 109.5 |
C1—C6—H6 | 119.8 | H12A—C12—H12B | 109.5 |
C5—C6—H6 | 119.8 | C10—C12—H12C | 109.5 |
O2—C7—H7A | 109.5 | H12A—C12—H12C | 109.5 |
O2—C7—H7B | 109.5 | H12B—C12—H12C | 109.5 |
H7A—C7—H7B | 109.5 | C10—C13—H13A | 109.5 |
O2—C7—H7C | 109.5 | C10—C13—H13B | 109.5 |
H7A—C7—H7C | 109.5 | H13A—C13—H13B | 109.5 |
H7B—C7—H7C | 109.5 | C10—C13—H13C | 109.5 |
N1—C8—C4 | 112.03 (19) | H13A—C13—H13C | 109.5 |
N1—C8—H8A | 109.2 | H13B—C13—H13C | 109.5 |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···O3i | 0.93 | 1.76 | 2.685 (2) | 175 |
N1—H1N···O2ii | 0.92 | 2.25 | 3.093 (3) | 152 |
Symmetry codes: (i) x−1, y, z; (ii) −x+1, y+1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C13H18ClNO3 |
Mr | 271.73 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 294 |
a, b, c (Å) | 9.3074 (10), 11.5585 (13), 13.0652 (14) |
β (°) | 90.378 (4) |
V (Å3) | 1405.5 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.27 |
Crystal size (mm) | 0.40 × 0.38 × 0.32 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID IP diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 15383, 2732, 2254 |
Rint | 0.042 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.060, 0.167, 1.05 |
No. of reflections | 2732 |
No. of parameters | 167 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.48, −0.67 |
Computer programs: PROCESS-AUTO (Rigaku, 1998), CrystalStructure (Rigaku/MSC, 2002), SIR92 (Altomare et al., 1993), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···O3i | 0.93 | 1.76 | 2.685 (2) | 175 |
N1—H1N···O2ii | 0.92 | 2.25 | 3.093 (3) | 152 |
Symmetry codes: (i) x−1, y, z; (ii) −x+1, y+1/2, −z+1/2. |
Acknowledgements
The work was supported by the Natural Science Foundation of Zhejiang Province of China (No. M203027).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Capsaicin, a pungent principle of capsicums, has been shown a variety of biological activities including mutagenicity (Kaga et al. 1989). During the investigation on syntheses of capsaicin derivatives, the title compound has recently been prepared in the labotory and its crystal structure is reported here.
The molecular structure of the title compound is shown in Fig. 1. The amide fragment is nearly perpendicular to the benzene ring [dihedral angle 85.66 (9))°]. The longer C9═O3 bond distance of 1.242 (3) Å and the shorter C9—N1 bond distance of 1.333 (3) Å suggest the electron delocalization in the amide fragment, which is comparable to that found in the related compound N-(4-Hydroxy-3-methoxybenzyl)benzamide (Xia et al. 2009).
Intermolecular O—H···O and N—H···O hydrogen bonding is present in the crystal structure (Table 1), which helps to stabilize the crystal structure.