metal-organic compounds
Disodium dihydrogen pyridine-2,3,5,6-tetracarboxylate trihydrate
aState Key Laboratory Base of Novel Functional Materials and Preparation Science, Center of Applied Solid State Chemistry Research, Ningbo University, Ningbo, Zhejiang 315211, People's Republic of China
*Correspondence e-mail: linjianli@nbu.edu.cn
In the title compound, 2Na+·C9H3NO82−·3H2O, the consists of two Na+ cations, one dihydrogen pyridine-2,3,5,6-tetracarboxylate dianion (H2pdtc2−) and three water molecules coordinated to the Na+ cations. The configuration of the anion is stabilized by intramolecular O—H⋯O hydrogen bonding between vicinal carboxylate/carboxy groups. The Na+ cations are bridged by the H2pdtc2− dianions, generating layers extending infinitely in sheets parallel to (001), and further pillared by the water molecule linkers to build up a three-dimensional framework.
Related literature
For related compounds involving the pyridine-2,3,5,6-tetracarboxylic acid ligand, see: Zhang et al. (2010); Yang et al. (2008); Sun, Zhou & An (2009); Sun, Zhou & Yan (2009).
Experimental
Crystal data
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Refinement
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Data collection: RAPID-AUTO (Rigaku, 1998); cell RAPID-AUTO; data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536810012870/ds2024sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810012870/ds2024Isup2.hkl
0.0766 g (0.3 mmol) pyridine-2,3,5,6-tetracarboxylic acid and 0.024 g (0.6 mmol) NaOH were successively added to 10.0 ml H2O and stirred at room temperature for 2 h, and the resulting colorless solution (pH = 3.48) was then transferred to a 50 ml beaker for slow evaporation at room temperature for several months, affording colorless block crystals (yield: 0.05 g).
H atoms bonded to C atoms were placed in geometrically calculated positions and were refined using a riding model, with Uiso(H) = 1.2Ueq(C). H atoms attached to O atoms were found in a difference Fourier synthesis and were refined using a riding model, with Uiso(H) values set at 1.2Ueq(O).
A great many metal-polycarboxylate compounds with benzene-1,2,4,5-tetracarboxylic acid (H4btec) as ligands have been designed and characterized (Zhang et al., 2010). Analogous in structure to H4btec, only four complexes [Ni(H2pdtc)(H2O)2].3H2O (Yang et al., 2008), [Zn4(pdtc)2(phen)2(H2O)2].20H2O (Yang et al., 2008), [Cd(H2pdtc)(H2O)3].3H2O (Sun, Zhou & Yan, 2009) and [Ni2(pdtc)(H2O)3(2,2'-bpy)].4H2O (Sun, Zhou & An, 2009) about pyridine-2,3,5,6-tetracarboxylic acid (H4pdtc) have been reported. The four coordination polymers are constructed by linking transition metal centres through the ligands. In this context, we represent a disodium salt of dihydrogen pyridine-2,3,5,6-tetracarboxylate dianion [Na2(H2pdtc)(H2O)3].
The
of the title compound consisits of two crystallographically independent Na cations, one dihydrogen pyridine-2,3,5,6-tetracarboxylate dianion (H2pdtc2-) and three water molecules (Fig. 1). The ligand is deprotonated at 2,5-positioned carboxylate groups. The values of the dihedral angle between the planes of the carboxylic groups and the planar pyridine ring are 3.7 (4)°, 2.0 (5)°, 10.5 (4)°, 2.4 (5)°, respectively. Both Na1 and Na2 ions are seven-coordinated with one N atom, two carboxylate O atoms and four water molecules at Na1 and five carboxylate O atoms and two water molecules at Na2, building highly distorted pentagonal–bipyramidal environment. The average value of the Na—O(water) length [2.494 (2) Å] is closer to the average Na—O (carboxylate) distance [2.498 (2) Å], and both are slightly smaller than the Na—N value [2.654 (2) Å]. The sodium cations are bridged by the (H2pdtc2-) to generate layers extending infinitely in sheets parallel to (001) (Fig. 2), and further pillared by the water molecule linkers (Fig. 3) to build up 3D framework, which is found to be stabilized by hydrogen bonds from water molecules to carboxylate O atoms (Table 1).For related compounds involving the pyridine-2,3,5,6-tetracarboxylic acid ligand, see: Zhang et al. (2010); Yang et al. (2008); Sun, Zhou & An (2009); Sun, Zhou & Yan (2009).
Data collection: RAPID-AUTO (Rigaku, 1998); cell
RAPID-AUTO (Rigaku, 1998); data reduction: CrystalStructure (Rigaku/MSC, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. ORTEP view of the title compound, Displacement ellipsoids are drawn at the 30% probability level. [Symmetry codes: (i) 2 - x, 1 - y, 1 - z; (ii) 3 - x, 1 - y, 1 - z; (iii) 2 - x, 1 - y, -z; (iv) x - 1, y - 1, z; (v) x, y - 1, z; (vi) 1 - x, -y, -z.] | |
Fig. 2. 2D layer ∞[Na2(H2pdtc)] parallel to (001) generated from bridging sodium cations and (H2pdtc2-). | |
Fig. 3. 3D framework built from linking ∞[Na2(H2pdtc)] layers by the water molecules (the water molecule linkers are marked in green) |
2Na+·C9H3NO82−·3H2O | Z = 2 |
Mr = 353.15 | F(000) = 360 |
Triclinic, P1 | Dx = 1.837 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 5.5844 (11) Å | Cell parameters from 4730 reflections |
b = 6.6770 (13) Å | θ = 3.3–27.5° |
c = 18.631 (4) Å | µ = 0.23 mm−1 |
α = 81.34 (3)° | T = 293 K |
β = 86.77 (3)° | Block, colourless |
γ = 68.36 (3)° | 0.1 × 0.1 × 0.1 mm |
V = 638.4 (2) Å3 |
Rigaku R-AXIS RAPID diffractometer | 2247 independent reflections |
Radiation source: fine-focus sealed tube | 1780 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.018 |
Detector resolution: 0 pixels mm-1 | θmax = 25.0°, θmin = 3.3° |
ω scans | h = −6→6 |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | k = −7→7 |
Tmin = 0.97, Tmax = 0.98 | l = −22→22 |
5075 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.139 | H-atom parameters constrained |
S = 1.14 | w = 1/[σ2(Fo2) + (0.0916P)2 + 0.0526P] where P = (Fo2 + 2Fc2)/3 |
2247 reflections | (Δ/σ)max < 0.001 |
208 parameters | Δρmax = 0.55 e Å−3 |
0 restraints | Δρmin = −0.33 e Å−3 |
2Na+·C9H3NO82−·3H2O | γ = 68.36 (3)° |
Mr = 353.15 | V = 638.4 (2) Å3 |
Triclinic, P1 | Z = 2 |
a = 5.5844 (11) Å | Mo Kα radiation |
b = 6.6770 (13) Å | µ = 0.23 mm−1 |
c = 18.631 (4) Å | T = 293 K |
α = 81.34 (3)° | 0.1 × 0.1 × 0.1 mm |
β = 86.77 (3)° |
Rigaku R-AXIS RAPID diffractometer | 2247 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 1780 reflections with I > 2σ(I) |
Tmin = 0.97, Tmax = 0.98 | Rint = 0.018 |
5075 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.139 | H-atom parameters constrained |
S = 1.14 | Δρmax = 0.55 e Å−3 |
2247 reflections | Δρmin = −0.33 e Å−3 |
208 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Na1 | 1.28244 (19) | 0.41119 (18) | 0.44136 (5) | 0.0360 (3) | |
Na2 | 0.70103 (18) | 0.05082 (15) | 0.05556 (5) | 0.0275 (3) | |
N | 1.2379 (4) | 0.4267 (3) | 0.29938 (10) | 0.0234 (5) | |
C1 | 1.1039 (4) | 0.3240 (4) | 0.27451 (12) | 0.0222 (5) | |
C2 | 1.0250 (4) | 0.3696 (4) | 0.20111 (12) | 0.0227 (5) | |
C3 | 1.0921 (4) | 0.5287 (4) | 0.15822 (12) | 0.0225 (5) | |
H3A | 1.0392 | 0.5653 | 0.1100 | 0.027* | |
C4 | 1.2339 (4) | 0.6372 (4) | 0.18300 (12) | 0.0205 (5) | |
C5 | 1.3080 (4) | 0.5774 (4) | 0.25638 (12) | 0.0213 (5) | |
C6 | 1.0527 (5) | 0.1626 (4) | 0.33584 (13) | 0.0280 (6) | |
O1 | 1.1267 (4) | 0.1553 (3) | 0.39697 (9) | 0.0364 (5) | |
O2 | 0.9322 (4) | 0.0429 (3) | 0.32087 (10) | 0.0408 (5) | |
C7 | 0.8762 (5) | 0.2689 (4) | 0.16184 (13) | 0.0252 (5) | |
O3 | 0.7999 (4) | 0.1219 (3) | 0.19559 (9) | 0.0361 (5) | |
H3 | 0.8543 | 0.0954 | 0.2396 | 0.043* | |
O4 | 0.8325 (3) | 0.3309 (3) | 0.09639 (9) | 0.0299 (4) | |
C8 | 1.2832 (4) | 0.8074 (4) | 0.12553 (12) | 0.0231 (5) | |
O5 | 1.1680 (3) | 0.8518 (3) | 0.06780 (9) | 0.0295 (4) | |
O6 | 1.4448 (3) | 0.8925 (3) | 0.13981 (9) | 0.0335 (5) | |
C9 | 1.4680 (5) | 0.6635 (4) | 0.29836 (13) | 0.0270 (6) | |
O7 | 1.5562 (4) | 0.8069 (3) | 0.26636 (10) | 0.0385 (5) | |
H7 | 1.5260 | 0.8359 | 0.2205 | 0.046* | |
O8 | 1.5129 (4) | 0.5911 (3) | 0.36238 (9) | 0.0437 (5) | |
O9 | 1.6891 (4) | 0.2384 (3) | 0.49492 (11) | 0.0466 (5) | |
H9A | 1.8156 | 0.2081 | 0.4655 | 0.056* | |
H9B | 1.7251 | 0.1117 | 0.5202 | 0.056* | |
O10 | 0.8582 (4) | 0.6942 (3) | 0.43369 (10) | 0.0363 (5) | |
H10A | 0.8616 | 0.8205 | 0.4131 | 0.044* | |
H10B | 0.7414 | 0.6720 | 0.4094 | 0.044* | |
O11 | 0.2943 (3) | 0.2647 (3) | 0.00399 (9) | 0.0304 (4) | |
H11A | 0.2605 | 0.3963 | −0.0208 | 0.037* | |
H11B | 0.1455 | 0.2949 | 0.0272 | 0.037* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Na1 | 0.0340 (6) | 0.0478 (6) | 0.0265 (6) | −0.0181 (5) | −0.0043 (4) | 0.0044 (4) |
Na2 | 0.0285 (5) | 0.0318 (5) | 0.0256 (5) | −0.0155 (4) | −0.0043 (4) | −0.0008 (4) |
N | 0.0272 (10) | 0.0255 (10) | 0.0180 (10) | −0.0103 (9) | −0.0006 (8) | −0.0027 (8) |
C1 | 0.0233 (11) | 0.0233 (12) | 0.0200 (12) | −0.0090 (10) | −0.0002 (9) | −0.0012 (9) |
C2 | 0.0238 (11) | 0.0224 (11) | 0.0227 (12) | −0.0092 (10) | −0.0015 (9) | −0.0036 (9) |
C3 | 0.0277 (12) | 0.0245 (12) | 0.0150 (11) | −0.0092 (10) | −0.0040 (9) | −0.0018 (9) |
C4 | 0.0223 (11) | 0.0206 (11) | 0.0190 (11) | −0.0087 (10) | 0.0001 (9) | −0.0020 (9) |
C5 | 0.0239 (11) | 0.0210 (11) | 0.0189 (11) | −0.0087 (10) | 0.0008 (9) | −0.0012 (9) |
C6 | 0.0314 (13) | 0.0300 (13) | 0.0237 (13) | −0.0146 (11) | 0.0001 (10) | 0.0013 (10) |
O1 | 0.0510 (12) | 0.0438 (11) | 0.0195 (10) | −0.0264 (10) | −0.0049 (8) | 0.0057 (8) |
O2 | 0.0608 (13) | 0.0453 (11) | 0.0292 (10) | −0.0379 (11) | −0.0054 (9) | 0.0056 (8) |
C7 | 0.0299 (13) | 0.0243 (12) | 0.0228 (13) | −0.0113 (11) | −0.0018 (10) | −0.0031 (10) |
O3 | 0.0517 (12) | 0.0412 (10) | 0.0275 (10) | −0.0324 (10) | −0.0060 (8) | 0.0008 (8) |
O4 | 0.0415 (10) | 0.0320 (9) | 0.0227 (9) | −0.0210 (8) | −0.0068 (7) | −0.0009 (7) |
C8 | 0.0273 (12) | 0.0261 (12) | 0.0169 (11) | −0.0116 (10) | 0.0006 (9) | −0.0017 (9) |
O5 | 0.0327 (9) | 0.0376 (10) | 0.0201 (9) | −0.0176 (8) | −0.0049 (7) | 0.0046 (7) |
O6 | 0.0455 (11) | 0.0461 (11) | 0.0213 (9) | −0.0337 (10) | −0.0057 (8) | 0.0040 (8) |
C9 | 0.0331 (13) | 0.0292 (13) | 0.0226 (13) | −0.0171 (11) | −0.0036 (10) | 0.0007 (10) |
O7 | 0.0557 (12) | 0.0519 (12) | 0.0234 (9) | −0.0394 (11) | −0.0088 (8) | 0.0027 (8) |
O8 | 0.0642 (14) | 0.0651 (13) | 0.0189 (10) | −0.0469 (12) | −0.0146 (9) | 0.0090 (9) |
O9 | 0.0342 (11) | 0.0582 (13) | 0.0355 (11) | −0.0105 (10) | 0.0001 (9) | 0.0132 (10) |
O10 | 0.0387 (10) | 0.0452 (11) | 0.0304 (10) | −0.0236 (9) | −0.0077 (8) | 0.0033 (8) |
O11 | 0.0286 (9) | 0.0302 (9) | 0.0296 (9) | −0.0098 (8) | 0.0007 (7) | 0.0019 (7) |
Na1—O9 | 2.337 (2) | C3—H3A | 0.9300 |
Na1—O8 | 2.379 (2) | C4—C5 | 1.406 (3) |
Na1—O10 | 2.420 (2) | C4—C8 | 1.531 (3) |
Na1—O1 | 2.442 (2) | C5—C9 | 1.528 (3) |
Na1—O10i | 2.498 (2) | C6—O1 | 1.221 (3) |
Na1—N | 2.654 (2) | C6—O2 | 1.287 (3) |
Na1—O9ii | 2.835 (3) | C7—O4 | 1.235 (3) |
Na1—Na1i | 3.657 (2) | C7—O3 | 1.278 (3) |
Na1—Na1ii | 3.948 (2) | O3—H3 | 0.8603 |
Na2—O11 | 2.358 (2) | C8—O5 | 1.225 (3) |
Na2—O5iii | 2.4395 (18) | C8—O6 | 1.288 (3) |
Na2—O6iv | 2.4477 (19) | O5—Na2iii | 2.4395 (18) |
Na2—O5v | 2.457 (2) | O5—Na2viii | 2.457 (2) |
Na2—O4 | 2.4738 (18) | O6—Na2ix | 2.4477 (19) |
Na2—O11vi | 2.516 (2) | C9—O8 | 1.221 (3) |
Na2—O3 | 2.840 (2) | C9—O7 | 1.287 (3) |
Na2—C7 | 3.022 (3) | O7—H7 | 0.8596 |
Na2—Na2vi | 3.444 (2) | O9—Na1ii | 2.835 (3) |
Na2—Na2vii | 3.724 (2) | O9—H9A | 0.8516 |
N—C1 | 1.325 (3) | O9—H9B | 0.8625 |
N—C5 | 1.349 (3) | O10—Na1i | 2.498 (2) |
C1—C2 | 1.414 (3) | O10—H10A | 0.8790 |
C1—C6 | 1.539 (3) | O10—H10B | 0.8816 |
C2—C3 | 1.382 (3) | O11—Na2vi | 2.516 (2) |
C2—C7 | 1.519 (3) | O11—H11A | 0.8872 |
C3—C4 | 1.389 (3) | O11—H11B | 0.8833 |
O9—Na1—O8 | 81.23 (8) | O11—Na2—Na2vii | 120.83 (6) |
O9—Na1—O10 | 151.17 (9) | O5iii—Na2—Na2vii | 40.67 (5) |
O8—Na1—O10 | 99.80 (8) | O6iv—Na2—Na2vii | 146.74 (7) |
O9—Na1—O1 | 112.23 (9) | O5v—Na2—Na2vii | 40.31 (4) |
O8—Na1—O1 | 120.07 (7) | O4—Na2—Na2vii | 83.00 (6) |
O10—Na1—O1 | 92.37 (7) | O11vi—Na2—Na2vii | 79.10 (6) |
O9—Na1—O10i | 81.74 (8) | O3—Na2—Na2vii | 108.88 (6) |
O8—Na1—O10i | 150.12 (7) | C7—Na2—Na2vii | 93.42 (6) |
O10—Na1—O10i | 83.92 (8) | Na2vi—Na2—Na2vii | 102.29 (5) |
O1—Na1—O10i | 89.14 (7) | C1—N—C5 | 122.15 (19) |
O9—Na1—N | 119.02 (8) | C1—N—Na1 | 120.01 (14) |
O8—Na1—N | 62.02 (6) | C5—N—Na1 | 116.33 (15) |
O10—Na1—N | 85.55 (8) | N—C1—C2 | 121.20 (19) |
O1—Na1—N | 60.81 (6) | N—C1—C6 | 110.34 (19) |
O10i—Na1—N | 147.64 (7) | C2—C1—C6 | 128.5 (2) |
O9—Na1—O9ii | 80.93 (8) | C3—C2—C1 | 116.0 (2) |
O8—Na1—O9ii | 70.80 (7) | C3—C2—C7 | 114.6 (2) |
O10—Na1—O9ii | 72.45 (7) | C1—C2—C7 | 129.44 (19) |
O1—Na1—O9ii | 163.26 (7) | C2—C3—C4 | 123.8 (2) |
O10i—Na1—O9ii | 82.40 (7) | C2—C3—H3A | 118.1 |
N—Na1—O9ii | 123.02 (7) | C4—C3—H3A | 118.1 |
O9—Na1—Na1i | 118.79 (7) | C3—C4—C5 | 116.01 (19) |
O8—Na1—Na1i | 134.81 (8) | C3—C4—C8 | 114.27 (19) |
O10—Na1—Na1i | 42.77 (5) | C5—C4—C8 | 129.72 (19) |
O1—Na1—Na1i | 90.98 (6) | N—C5—C4 | 120.8 (2) |
O10i—Na1—Na1i | 41.15 (5) | N—C5—C9 | 111.11 (19) |
N—Na1—Na1i | 121.70 (7) | C4—C5—C9 | 128.05 (19) |
O9ii—Na1—Na1i | 73.15 (6) | O1—C6—O2 | 122.8 (2) |
O9—Na1—Na1ii | 45.17 (6) | O1—C6—C1 | 118.3 (2) |
O8—Na1—Na1ii | 70.94 (5) | O2—C6—C1 | 118.9 (2) |
O10—Na1—Na1ii | 107.58 (7) | C6—O1—Na1 | 127.72 (16) |
O1—Na1—Na1ii | 155.73 (7) | O4—C7—O3 | 120.7 (2) |
O10i—Na1—Na1ii | 79.63 (5) | O4—C7—C2 | 118.50 (19) |
N—Na1—Na1ii | 132.72 (6) | O3—C7—C2 | 120.8 (2) |
O9ii—Na1—Na1ii | 35.76 (5) | O4—C7—Na2 | 52.54 (11) |
Na1i—Na1—Na1ii | 94.41 (5) | O3—C7—Na2 | 69.52 (13) |
O11—Na2—O5iii | 80.18 (7) | C2—C7—Na2 | 164.48 (15) |
O11—Na2—O6iv | 82.71 (7) | C7—O3—Na2 | 85.55 (14) |
O5iii—Na2—O6iv | 150.56 (7) | C7—O3—H3 | 107.5 |
O11—Na2—O5v | 161.10 (7) | Na2—O3—H3 | 160.1 |
O5iii—Na2—O5v | 80.98 (7) | C7—O4—Na2 | 104.12 (14) |
O6iv—Na2—O5v | 113.75 (7) | O5—C8—O6 | 123.9 (2) |
O11—Na2—O4 | 101.38 (7) | O5—C8—C4 | 117.35 (19) |
O5iii—Na2—O4 | 89.54 (6) | O6—C8—C4 | 118.8 (2) |
O6iv—Na2—O4 | 117.34 (7) | C8—O5—Na2iii | 130.76 (15) |
O5v—Na2—O4 | 79.82 (7) | C8—O5—Na2viii | 123.43 (15) |
O11—Na2—O11vi | 90.16 (7) | Na2iii—O5—Na2viii | 99.02 (7) |
O5iii—Na2—O11vi | 78.64 (7) | C8—O6—Na2ix | 128.80 (14) |
O6iv—Na2—O11vi | 77.63 (6) | O8—C9—O7 | 121.0 (2) |
O5v—Na2—O11vi | 84.77 (7) | O8—C9—C5 | 118.5 (2) |
O4—Na2—O11vi | 161.90 (7) | O7—C9—C5 | 120.5 (2) |
O11—Na2—O3 | 117.19 (7) | C9—O7—H7 | 112.8 |
O5iii—Na2—O3 | 134.97 (6) | C9—O8—Na1 | 126.87 (16) |
O6iv—Na2—O3 | 74.36 (6) | Na1—O9—Na1ii | 99.07 (8) |
O5v—Na2—O3 | 77.80 (7) | Na1—O9—H9A | 115.5 |
O4—Na2—O3 | 47.92 (6) | Na1ii—O9—H9A | 104.4 |
O11vi—Na2—O3 | 137.20 (7) | Na1—O9—H9B | 118.8 |
O11—Na2—C7 | 113.48 (7) | Na1ii—O9—H9B | 120.3 |
O5iii—Na2—C7 | 110.79 (7) | H9A—O9—H9B | 98.8 |
O6iv—Na2—C7 | 97.96 (7) | Na1—O10—Na1i | 96.08 (8) |
O5v—Na2—C7 | 74.82 (7) | Na1—O10—H10A | 112.2 |
O4—Na2—C7 | 23.34 (6) | Na1i—O10—H10A | 129.4 |
O11vi—Na2—C7 | 155.41 (7) | Na1—O10—H10B | 116.3 |
O3—Na2—C7 | 24.93 (6) | Na1i—O10—H10B | 97.7 |
O11—Na2—Na2vi | 46.94 (5) | H10A—O10—H10B | 105.2 |
O5iii—Na2—Na2vi | 74.89 (5) | Na2—O11—Na2vi | 89.84 (7) |
O6iv—Na2—Na2vi | 75.92 (5) | Na2—O11—H11A | 122.9 |
O5v—Na2—Na2vi | 125.55 (7) | Na2vi—O11—H11A | 121.8 |
O4—Na2—Na2vi | 146.06 (7) | Na2—O11—H11B | 125.4 |
O11vi—Na2—Na2vi | 43.23 (5) | Na2vi—O11—H11B | 100.3 |
O3—Na2—Na2vi | 148.10 (6) | H11A—O11—H11B | 96.5 |
C7—Na2—Na2vi | 159.59 (7) |
Symmetry codes: (i) −x+2, −y+1, −z+1; (ii) −x+3, −y+1, −z+1; (iii) −x+2, −y+1, −z; (iv) x−1, y−1, z; (v) x, y−1, z; (vi) −x+1, −y, −z; (vii) −x+2, −y, −z; (viii) x, y+1, z; (ix) x+1, y+1, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O2 | 0.86 | 1.55 | 2.410 | 175 |
O7—H7···O6 | 0.86 | 1.55 | 2.402 | 175 |
O9—H9A···O1x | 0.85 | 2.05 | 2.900 | 175 |
O9—H9B···O1xi | 0.86 | 2.11 | 2.945 | 161 |
O10—H10A···O2viii | 0.88 | 2.21 | 3.024 | 153 |
O10—H10B···O8xii | 0.88 | 1.86 | 2.738 | 173 |
O11—H11A···O4xiii | 0.89 | 2.05 | 2.917 | 167 |
O11—H11B···O4xii | 0.88 | 2.08 | 2.949 | 170 |
Symmetry codes: (viii) x, y+1, z; (x) x+1, y, z; (xi) −x+3, −y, −z+1; (xii) x−1, y, z; (xiii) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | 2Na+·C9H3NO82−·3H2O |
Mr | 353.15 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 5.5844 (11), 6.6770 (13), 18.631 (4) |
α, β, γ (°) | 81.34 (3), 86.77 (3), 68.36 (3) |
V (Å3) | 638.4 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.23 |
Crystal size (mm) | 0.1 × 0.1 × 0.1 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.97, 0.98 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5075, 2247, 1780 |
Rint | 0.018 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.139, 1.14 |
No. of reflections | 2247 |
No. of parameters | 208 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.55, −0.33 |
Computer programs: RAPID-AUTO (Rigaku, 1998), CrystalStructure (Rigaku/MSC, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O2 | 0.86 | 1.55 | 2.410 | 175 |
O7—H7···O6 | 0.86 | 1.55 | 2.402 | 175 |
O9—H9A···O1i | 0.85 | 2.05 | 2.900 | 175 |
O9—H9B···O1ii | 0.86 | 2.11 | 2.945 | 161 |
O10—H10A···O2iii | 0.88 | 2.21 | 3.024 | 153 |
O10—H10B···O8iv | 0.88 | 1.86 | 2.738 | 173 |
O11—H11A···O4v | 0.89 | 2.05 | 2.917 | 167 |
O11—H11B···O4iv | 0.88 | 2.08 | 2.949 | 170 |
Symmetry codes: (i) x+1, y, z; (ii) −x+3, −y, −z+1; (iii) x, y+1, z; (iv) x−1, y, z; (v) −x+1, −y+1, −z. |
Acknowledgements
This project was supported by the National Natural Science Foundation of China (grant No. 20072022), the Science and Technology Department of Zhejiang Province (grant No. 2006C21105), and the Education Department of Zhejiang Province. The authors also extend grateful thanks to the K. C. Wong Magna Fund of Ningbo University.
References
Higashi, T. (1995). ABSCOR. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku (1998). RAPID-AUTO. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku/MSC (2004). CrystalStructure. Rigaku/MSC Inc., The Woodlands, Texas, USA. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sun, X. J., Zhou, J. F. & An, L. T. (2009). Z. Kristallogr. New Cryst. Struct. 224, 469–470. CAS Google Scholar
Sun, X. J., Zhou, J. F. & Yan, M. Z. (2009). Chin. J. Inorg. Chem. 25, 1483–1486. CAS Google Scholar
Yang, A. H., Zhang, H., Gao, H. L., Zhang, W. Q., He, L. & Cui, J. Z. (2008). Cryst. Growth Des. 8, 3354–3359. Web of Science CSD CrossRef CAS Google Scholar
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A great many metal-polycarboxylate compounds with benzene-1,2,4,5-tetracarboxylic acid (H4btec) as ligands have been designed and characterized (Zhang et al., 2010). Analogous in structure to H4btec, only four complexes [Ni(H2pdtc)(H2O)2].3H2O (Yang et al., 2008), [Zn4(pdtc)2(phen)2(H2O)2].20H2O (Yang et al., 2008), [Cd(H2pdtc)(H2O)3].3H2O (Sun, Zhou & Yan, 2009) and [Ni2(pdtc)(H2O)3(2,2'-bpy)].4H2O (Sun, Zhou & An, 2009) about pyridine-2,3,5,6-tetracarboxylic acid (H4pdtc) have been reported. The four coordination polymers are constructed by linking transition metal centres through the ligands. In this context, we represent a disodium salt of dihydrogen pyridine-2,3,5,6-tetracarboxylate dianion [Na2(H2pdtc)(H2O)3].
The asymmetric unit of the title compound consisits of two crystallographically independent Na cations, one dihydrogen pyridine-2,3,5,6-tetracarboxylate dianion (H2pdtc2-) and three water molecules (Fig. 1). The ligand is deprotonated at 2,5-positioned carboxylate groups. The values of the dihedral angle between the planes of the carboxylic groups and the planar pyridine ring are 3.7 (4)°, 2.0 (5)°, 10.5 (4)°, 2.4 (5)°, respectively. Both Na1 and Na2 ions are seven-coordinated with one N atom, two carboxylate O atoms and four water molecules at Na1 and five carboxylate O atoms and two water molecules at Na2, building highly distorted pentagonal–bipyramidal environment. The average value of the Na—O(water) length [2.494 (2) Å] is closer to the average Na—O (carboxylate) distance [2.498 (2) Å], and both are slightly smaller than the Na—N value [2.654 (2) Å]. The sodium cations are bridged by the (H2pdtc2-) to generate layers extending infinitely in sheets parallel to (001) (Fig. 2), and further pillared by the water molecule linkers (Fig. 3) to build up 3D framework, which is found to be stabilized by hydrogen bonds from water molecules to carboxylate O atoms (Table 1).