metal-organic compounds
Tetraaquabis(1,10-phenanthroline)bis[μ2-1H-pyrazole-3,5-dicarboxylato(3−)]tricopper(II) dihydrate
aShenzhen Environmental Monitoring Center, Shenzhen 518008, People's Republic of China, and bState Key Laboratory of Electroanalytical Chemistry, Changchun Institute of Applied Chemistry, Chinese Academy of Sciences, Changchun 130022, People's Republic of China
*Correspondence e-mail: jwxu@ciac.jl.cn
The title compound, [Cu3(C5HN2O4)2(C12H8N2)2(H2O)4]·2H2O, is a trinuclear copper(II) complex in which two centrosymmetrically related pyrazole-3,5-dicarboxylate(3−) and 1,10-phenanthroline ligands bind three CuII atoms, with one CuII atom located on a center of symmetry. In each complex, there are four coordinated water molecules and two solvent water molecules, which participate in extensive hydrogen-bond patterns. These interactions, as well as π–π interactions between neighbouring 1,10-phenanthroline ligands [shortest atom-to-atom distance = 3.363 (3) Å], extend the into a three-dimensional supramolecular network.
Related literature
For the potential applications of novel coordination architectures as new classes of materials, see: Kitagawa et al. (2004). The potential coordination sites of 3,5-pyrazoledicarboxylate are highly accessible to metal ions, see: Li (2005). However, divalent copper ions have rarely been coordinated with 3,5-pyrazoledicarboxylic acid at ambient temperature, see: King et al. (2003).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 2003); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536810012833/ez2198sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810012833/ez2198Isup2.hkl
The title complex was prepared by the addition of Cu(BF4)2 (20 mmol), 1,10-phenanthroline (30 mmol) and 3,5-pyrazoledicarboxylic acid (30 mmol) to 40 ml water. The mixture was stirred for 1 h, a blue precipitate was obtained. A minimum amount of ammonia (14 M) was added to give a blue solution. Suitable crystals were obtained after standing at room temperature for several days (yield 42% based on Cu).
H atoms were placed geometrically and refined with fixed individual displacement parameters [Uiso(H) = 1.2Ueq(C,N)], using a riding model, with a C—H distance of 0.93 Å. The H atoms bonded to O atoms of water molecules were located in a difference Fourier map and refined with fixed individual displacement parameters Uiso(H) = 1.2Ueq(O).
The design and synthesis of novel coordination architectures has attracted wide attention because of their intriguing network topologies and potential applications as new classes of materials (Kitagawa et al., 2004). 3,5-pyrazoledicarboxylate has several potential coordination sites: both nitrogen atoms of the pyrazole ring and the four carboxylate oxygen atoms, which are highly accessible to metal ions (Li, 2005). However, divalent copper ions have rarely been coordinated with 3,5-pyrazoledicarboxylic acid under ambient temperatures (King et al., 2003). In this study, we chose 3,5-pyrazoledicarboxylic acid and 1,10-phenanthroline as mixed ligands to obtain blue crystals of the title compound (I), which as shown in Fig. 1 is a copper(II) trimer.
The central copper atom, Cu(1), lies on a crystallographic inversion center, and has a six-coordinate octahedral geometry, in the which two oxygen atoms and two nitrogen atoms from two 3,5-pyrazoledicarboxylate ligands occupy the equatorial plane. The axial coordination sites are occupied by two water molecules. The Cu(1)—N/O bond distances span a very large range from 1.974 (5) to 2.595 (5) Å. The other two symmetry-related copper atoms, Cu(2), have pentacoordinate square-pyramidal geometry: a pyrazole nitrogen N(2) and a carboxylate oxygen O(3) from one 3,5-pyrazoledicarboxylato ligand occupy two coordination sites, two nitrogen atoms from one 1,10-phenanthroline chelate the Cu(2) atoms, while the remaining position is occupied by a water molecule. The Cu(2)—N/O bond distances range from 1.979 (6) to 2.171 (5) Å. The 3,5-pyrazoledicarboxylate ligand is nearly planar, with greatest deviation from the mean plane defined by the pyrazole ring by the carboxylate groups with values ranging from 0.0015 (1) to 0.0937 (1) Å. It can be seen that the ligand bite angles at the two different copper centers Cu(1) and Cu(2) are similar, 80.9 (3)° and 82.5 (4)°, respectively. This implies that the 3,5-pyrazoledicarboxylate ligand is a fairly rigid ligand and retains its integrity on metal chelation.
In the π-π interactions also exist between neighbouring 1,10-phenanthroline ligands, with the nearest atom-to-atom distance between neighbouring 1,10-phenanthroline ligands being 3.363 (3) Å. The strong hydrogen bonding interactions as well as π-π interactions extend the into a three-dimensional supramolecular network (Fig. 2).
there is one lattice water molecule, O(7), and because each trimer contains four coordinated water molecules and carboxylate oxygen atoms, a complex network of hydrogen-bonding interactions is formed. Each 3,5-pyrazoledicarboxylato contains four hydrogen bond acceptors, while each coordinated water molecule acts as both a two hydrogen bond donor and a hydrogen bond acceptor, and the lattice water molecule is only a two hydrogen bond donor. In theFor related literature, see: Kitagawa et al. (2004); King et al. (2003); Li (2005).
Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 2003); data reduction: SAINT (Bruker, 2003); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. A view of (I), with the atom-labeling scheme and 30% probability displacement ellipsoids. [Symmetry code: (A) 1 - x, 1 - y, 1 - z.] For clarity the lattice water molecules have been omitted. | |
Fig. 2. Perspective view of packing structure of (I) along the c axes, with hydrogen bonds indicated by dashed lines. For the sake of clarity, H atoms not involved in hydrogen bonds have been omitted. |
[Cu3(C5HN2O4)2(C12H8N2)2(H2O)4]·2H2O | Z = 1 |
Mr = 965.28 | F(000) = 489 |
Triclinic, P1 | Dx = 1.867 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 7.7326 (8) Å | Cell parameters from 737 reflections |
b = 9.3332 (9) Å | θ = 2.3–22.4° |
c = 12.6848 (12) Å | µ = 1.93 mm−1 |
α = 100.204 (2)° | T = 187 K |
β = 98.376 (2)° | Block, blue |
γ = 103.641 (2)° | 0.07 × 0.07 × 0.03 mm |
V = 858.59 (15) Å3 |
Bruker APEX CCD area-detector diffractometer | 3151 independent reflections |
Radiation source: fine-focus sealed tube | 2361 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.039 |
φ and ω scans | θmax = 25.5°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2003) | h = −8→9 |
Tmin = 0.872, Tmax = 0.937 | k = −11→9 |
4550 measured reflections | l = −9→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.071 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.155 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.10 | w = 1/[σ2(Fo2) + (0.0597P)2 + 0.8906P] where P = (Fo2 + 2Fc2)/3 |
3151 reflections | (Δ/σ)max = 0.027 |
274 parameters | Δρmax = 0.87 e Å−3 |
2 restraints | Δρmin = −0.58 e Å−3 |
[Cu3(C5HN2O4)2(C12H8N2)2(H2O)4]·2H2O | γ = 103.641 (2)° |
Mr = 965.28 | V = 858.59 (15) Å3 |
Triclinic, P1 | Z = 1 |
a = 7.7326 (8) Å | Mo Kα radiation |
b = 9.3332 (9) Å | µ = 1.93 mm−1 |
c = 12.6848 (12) Å | T = 187 K |
α = 100.204 (2)° | 0.07 × 0.07 × 0.03 mm |
β = 98.376 (2)° |
Bruker APEX CCD area-detector diffractometer | 3151 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2003) | 2361 reflections with I > 2σ(I) |
Tmin = 0.872, Tmax = 0.937 | Rint = 0.039 |
4550 measured reflections |
R[F2 > 2σ(F2)] = 0.071 | 2 restraints |
wR(F2) = 0.155 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.10 | Δρmax = 0.87 e Å−3 |
3151 reflections | Δρmin = −0.58 e Å−3 |
274 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.5000 | 0.5000 | 0.5000 | 0.0217 (3) | |
Cu2 | 0.31791 (11) | 0.03642 (9) | 0.30349 (7) | 0.0197 (3) | |
N1 | 0.5830 (7) | 0.3127 (5) | 0.4748 (4) | 0.0162 (12) | |
N2 | 0.5312 (7) | 0.1718 (6) | 0.4112 (4) | 0.0185 (12) | |
N3 | 0.3647 (7) | 0.1167 (6) | 0.1569 (4) | 0.0200 (13) | |
N4 | 0.1358 (7) | −0.1271 (6) | 0.1893 (5) | 0.0223 (13) | |
O1 | 0.7315 (6) | 0.5766 (5) | 0.6067 (4) | 0.0232 (11) | |
O2 | 0.9943 (6) | 0.5210 (5) | 0.6534 (4) | 0.0256 (12) | |
O3 | 0.4855 (6) | −0.1054 (5) | 0.3024 (4) | 0.0190 (11) | |
O4 | 0.7632 (6) | −0.1122 (5) | 0.3758 (4) | 0.0228 (11) | |
O5 | 0.3188 (6) | 0.4290 (5) | 0.6487 (4) | 0.0301 (12) | |
H5A | 0.2105 | 0.4377 | 0.6272 | 0.036* | |
H5B | 0.2736 | 0.3280 | 0.6305 | 0.036* | |
O6 | 0.1384 (8) | 0.1048 (7) | 0.3818 (5) | 0.0413 (15) | |
H6A | 0.025 (5) | 0.049 (8) | 0.365 (7) | 0.050* | |
H6B | 0.175 (11) | 0.116 (10) | 0.453 (2) | 0.050* | |
O7 | 0.3725 (8) | 0.5886 (6) | 0.1884 (5) | 0.0453 (16) | |
H7A | 0.4402 | 0.5425 | 0.2201 | 0.054* | |
H7B | 0.4142 | 0.6789 | 0.2299 | 0.054* | |
C1 | 0.8372 (9) | 0.4887 (7) | 0.6033 (5) | 0.0168 (14) | |
C2 | 0.7527 (9) | 0.3356 (7) | 0.5299 (5) | 0.0165 (14) | |
C3 | 0.8129 (8) | 0.2092 (7) | 0.5029 (5) | 0.0159 (14) | |
H3 | 0.9272 | 0.1942 | 0.5296 | 0.019* | |
C4 | 0.6679 (8) | 0.1085 (7) | 0.4275 (5) | 0.0147 (14) | |
C5 | 0.6392 (9) | −0.0491 (7) | 0.3650 (5) | 0.0144 (14) | |
C6 | 0.4736 (10) | 0.2407 (8) | 0.1428 (7) | 0.0294 (18) | |
H6 | 0.5417 | 0.3154 | 0.2054 | 0.035* | |
C7 | 0.4934 (11) | 0.2670 (8) | 0.0375 (7) | 0.0342 (19) | |
H7 | 0.5729 | 0.3576 | 0.0299 | 0.041* | |
C8 | 0.3963 (10) | 0.1598 (9) | −0.0520 (6) | 0.0305 (18) | |
H8 | 0.4087 | 0.1752 | −0.1228 | 0.037* | |
C9 | 0.2791 (10) | 0.0281 (8) | −0.0407 (6) | 0.0253 (17) | |
C10 | 0.1717 (10) | −0.0923 (9) | −0.1297 (6) | 0.0296 (18) | |
H10 | 0.1831 | −0.0840 | −0.2021 | 0.036* | |
C11 | 0.0548 (10) | −0.2173 (8) | −0.1152 (6) | 0.0277 (18) | |
H11 | −0.0148 | −0.2939 | −0.1763 | 0.033* | |
C12 | 0.0373 (9) | −0.2327 (8) | −0.0056 (6) | 0.0223 (16) | |
C13 | −0.0827 (10) | −0.3571 (8) | 0.0162 (7) | 0.0303 (19) | |
H13 | −0.1585 | −0.4353 | −0.0420 | 0.036* | |
C14 | −0.0892 (10) | −0.3643 (8) | 0.1231 (6) | 0.0309 (18) | |
H14 | −0.1693 | −0.4481 | 0.1393 | 0.037* | |
C15 | 0.0211 (9) | −0.2496 (8) | 0.2065 (6) | 0.0247 (16) | |
H15 | 0.0158 | −0.2573 | 0.2797 | 0.030* | |
C16 | 0.1457 (9) | −0.1181 (8) | 0.0838 (6) | 0.0221 (16) | |
C17 | 0.2664 (9) | 0.0116 (8) | 0.0656 (6) | 0.0217 (16) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0237 (7) | 0.0135 (6) | 0.0264 (8) | 0.0099 (5) | −0.0023 (5) | −0.0002 (5) |
Cu2 | 0.0173 (5) | 0.0231 (5) | 0.0140 (5) | 0.0037 (3) | 0.0001 (3) | −0.0038 (4) |
N1 | 0.019 (3) | 0.007 (3) | 0.016 (3) | −0.002 (2) | −0.003 (2) | −0.002 (2) |
N2 | 0.019 (3) | 0.020 (3) | 0.018 (3) | 0.008 (2) | 0.002 (2) | 0.005 (2) |
N3 | 0.025 (3) | 0.020 (3) | 0.018 (3) | 0.012 (2) | 0.004 (2) | 0.004 (2) |
N4 | 0.019 (3) | 0.025 (3) | 0.019 (3) | 0.006 (2) | 0.002 (2) | −0.003 (3) |
O1 | 0.024 (3) | 0.016 (2) | 0.028 (3) | 0.010 (2) | −0.001 (2) | 0.000 (2) |
O2 | 0.023 (3) | 0.021 (3) | 0.029 (3) | 0.009 (2) | −0.003 (2) | −0.001 (2) |
O3 | 0.019 (2) | 0.013 (2) | 0.022 (3) | 0.0055 (19) | −0.002 (2) | 0.000 (2) |
O4 | 0.023 (3) | 0.021 (2) | 0.023 (3) | 0.009 (2) | 0.003 (2) | 0.000 (2) |
O5 | 0.025 (3) | 0.022 (3) | 0.042 (3) | 0.006 (2) | 0.004 (2) | 0.006 (2) |
O6 | 0.032 (3) | 0.047 (4) | 0.040 (4) | 0.006 (3) | 0.004 (3) | 0.006 (3) |
O7 | 0.056 (4) | 0.027 (3) | 0.040 (4) | 0.011 (3) | −0.016 (3) | −0.004 (3) |
C1 | 0.020 (4) | 0.018 (3) | 0.009 (3) | 0.004 (3) | −0.002 (3) | 0.003 (3) |
C2 | 0.025 (4) | 0.010 (3) | 0.012 (4) | 0.002 (3) | 0.003 (3) | 0.001 (3) |
C3 | 0.015 (3) | 0.017 (3) | 0.018 (4) | 0.007 (3) | 0.001 (3) | 0.006 (3) |
C4 | 0.021 (3) | 0.015 (3) | 0.013 (4) | 0.009 (3) | 0.010 (3) | 0.005 (3) |
C5 | 0.021 (4) | 0.012 (3) | 0.011 (3) | 0.004 (3) | 0.004 (3) | 0.003 (3) |
C6 | 0.031 (4) | 0.023 (4) | 0.032 (5) | 0.009 (3) | 0.003 (3) | 0.001 (3) |
C7 | 0.039 (5) | 0.023 (4) | 0.044 (5) | 0.008 (3) | 0.011 (4) | 0.013 (4) |
C8 | 0.028 (4) | 0.046 (5) | 0.026 (4) | 0.018 (4) | 0.013 (3) | 0.015 (4) |
C9 | 0.027 (4) | 0.034 (4) | 0.017 (4) | 0.018 (3) | 0.005 (3) | 0.001 (3) |
C10 | 0.034 (4) | 0.049 (5) | 0.012 (4) | 0.024 (4) | 0.005 (3) | 0.004 (3) |
C11 | 0.031 (4) | 0.025 (4) | 0.021 (4) | 0.011 (3) | −0.004 (3) | −0.007 (3) |
C12 | 0.025 (4) | 0.026 (4) | 0.015 (4) | 0.016 (3) | −0.002 (3) | −0.005 (3) |
C13 | 0.029 (4) | 0.016 (4) | 0.038 (5) | 0.004 (3) | −0.002 (3) | −0.007 (3) |
C14 | 0.027 (4) | 0.028 (4) | 0.029 (5) | −0.003 (3) | 0.000 (3) | 0.003 (3) |
C15 | 0.023 (4) | 0.023 (4) | 0.027 (4) | 0.006 (3) | 0.005 (3) | 0.003 (3) |
C16 | 0.018 (4) | 0.027 (4) | 0.021 (4) | 0.009 (3) | 0.003 (3) | −0.002 (3) |
C17 | 0.024 (4) | 0.025 (4) | 0.020 (4) | 0.015 (3) | 0.006 (3) | 0.003 (3) |
Cu1—O1 | 1.974 (5) | C1—C2 | 1.499 (8) |
Cu1—O1i | 1.974 (5) | C2—C3 | 1.374 (8) |
Cu1—N1i | 1.990 (5) | C3—C4 | 1.388 (8) |
Cu1—N1 | 1.990 (5) | C3—H3 | 0.9500 |
Cu2—N2 | 1.983 (5) | C4—C5 | 1.491 (8) |
Cu2—O6 | 1.979 (6) | C6—C7 | 1.423 (10) |
Cu2—N4 | 2.005 (5) | C6—H6 | 0.9500 |
Cu2—O3 | 2.059 (4) | C7—C8 | 1.359 (10) |
Cu2—N3 | 2.171 (6) | C7—H7 | 0.9500 |
N1—C2 | 1.343 (8) | C8—C9 | 1.388 (10) |
N1—N2 | 1.350 (7) | C8—H8 | 0.9500 |
N2—C4 | 1.335 (8) | C9—C17 | 1.399 (9) |
N3—C6 | 1.318 (9) | C9—C10 | 1.436 (10) |
N3—C17 | 1.368 (8) | C10—C11 | 1.357 (10) |
N4—C15 | 1.344 (9) | C10—H10 | 0.9500 |
N4—C16 | 1.368 (8) | C11—C12 | 1.445 (10) |
O1—C1 | 1.287 (8) | C11—H11 | 0.9500 |
O2—C1 | 1.227 (7) | C12—C13 | 1.402 (10) |
O3—C5 | 1.266 (7) | C12—C16 | 1.415 (9) |
O4—C5 | 1.242 (7) | C13—C14 | 1.377 (10) |
O5—H5A | 0.8692 | C13—H13 | 0.9500 |
O5—H5B | 0.8987 | C14—C15 | 1.378 (10) |
O6—H6A | 0.88 (2) | C14—H14 | 0.9500 |
O6—H6B | 0.88 (2) | C15—H15 | 0.9500 |
O7—H7A | 0.8526 | C16—C17 | 1.421 (10) |
O7—H7B | 0.8695 | ||
O1—Cu1—O1i | 180.000 (1) | C4—C3—H3 | 128.1 |
O1—Cu1—N1i | 97.50 (19) | N2—C4—C3 | 110.0 (5) |
O1i—Cu1—N1i | 82.50 (19) | N2—C4—C5 | 117.1 (6) |
O1—Cu1—N1 | 82.50 (19) | C3—C4—C5 | 132.9 (6) |
O1i—Cu1—N1 | 97.50 (19) | O4—C5—O3 | 125.9 (6) |
N1i—Cu1—N1 | 180.000 (1) | O4—C5—C4 | 119.6 (6) |
N2—Cu2—O6 | 94.4 (2) | O3—C5—C4 | 114.5 (5) |
N2—Cu2—N4 | 168.4 (2) | N3—C6—C7 | 122.6 (7) |
O6—Cu2—N4 | 95.8 (2) | N3—C6—H6 | 118.7 |
N2—Cu2—O3 | 80.9 (2) | C7—C6—H6 | 118.7 |
O6—Cu2—O3 | 142.7 (2) | C8—C7—C6 | 118.6 (7) |
N4—Cu2—O3 | 87.6 (2) | C8—C7—H7 | 120.7 |
N2—Cu2—N3 | 100.5 (2) | C6—C7—H7 | 120.7 |
O6—Cu2—N3 | 118.2 (2) | C7—C8—C9 | 120.6 (7) |
N4—Cu2—N3 | 79.4 (2) | C7—C8—H8 | 119.7 |
O3—Cu2—N3 | 98.95 (19) | C9—C8—H8 | 119.7 |
C2—N1—N2 | 107.8 (5) | C8—C9—C17 | 117.2 (7) |
C2—N1—Cu1 | 111.5 (4) | C8—C9—C10 | 125.0 (7) |
N2—N1—Cu1 | 140.3 (4) | C17—C9—C10 | 117.9 (7) |
C4—N2—N1 | 108.1 (5) | C11—C10—C9 | 123.0 (7) |
C4—N2—Cu2 | 112.9 (4) | C11—C10—H10 | 118.5 |
N1—N2—Cu2 | 139.0 (4) | C9—C10—H10 | 118.5 |
C6—N3—C17 | 117.7 (6) | C10—C11—C12 | 119.3 (6) |
C6—N3—Cu2 | 131.6 (5) | C10—C11—H11 | 120.4 |
C17—N3—Cu2 | 110.7 (4) | C12—C11—H11 | 120.4 |
C15—N4—C16 | 118.2 (6) | C13—C12—C16 | 118.4 (7) |
C15—N4—Cu2 | 126.5 (5) | C13—C12—C11 | 122.7 (6) |
C16—N4—Cu2 | 115.0 (4) | C16—C12—C11 | 118.9 (6) |
C1—O1—Cu1 | 115.1 (4) | C14—C13—C12 | 119.1 (7) |
C5—O3—Cu2 | 114.6 (4) | C14—C13—H13 | 120.5 |
H5A—O5—H5B | 88.9 | C12—C13—H13 | 120.5 |
Cu2—O6—H6A | 119 (5) | C15—C14—C13 | 119.7 (7) |
Cu2—O6—H6B | 109 (6) | C15—C14—H14 | 120.1 |
H6A—O6—H6B | 107 (8) | C13—C14—H14 | 120.1 |
H7A—O7—H7B | 100.3 | N4—C15—C14 | 123.2 (7) |
O2—C1—O1 | 125.7 (6) | N4—C15—H15 | 118.4 |
O2—C1—C2 | 120.2 (6) | C14—C15—H15 | 118.4 |
O1—C1—C2 | 114.1 (5) | N4—C16—C12 | 121.5 (6) |
N1—C2—C3 | 110.3 (5) | N4—C16—C17 | 118.2 (6) |
N1—C2—C1 | 115.9 (5) | C12—C16—C17 | 120.3 (7) |
C3—C2—C1 | 133.8 (6) | N3—C17—C9 | 123.3 (6) |
C2—C3—C4 | 103.9 (5) | N3—C17—C16 | 116.1 (6) |
C2—C3—H3 | 128.1 | C9—C17—C16 | 120.5 (6) |
Symmetry code: (i) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···O2ii | 0.87 | 2.05 | 2.842 (7) | 152 |
O5—H5B···O4iii | 0.90 | 1.95 | 2.824 (7) | 163 |
O6—H6A···O4ii | 0.88 (5) | 2.26 (6) | 3.104 (8) | 161 (7) |
O6—H6B···O4iii | 0.89 (3) | 2.16 (3) | 3.042 (8) | 172 (10) |
O7—H7A···O5i | 0.85 | 2.24 | 2.977 (8) | 145 |
O7—H7B···O3iv | 0.87 | 1.97 | 2.829 (7) | 170 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x−1, y, z; (iii) −x+1, −y, −z+1; (iv) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | [Cu3(C5HN2O4)2(C12H8N2)2(H2O)4]·2H2O |
Mr | 965.28 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 187 |
a, b, c (Å) | 7.7326 (8), 9.3332 (9), 12.6848 (12) |
α, β, γ (°) | 100.204 (2), 98.376 (2), 103.641 (2) |
V (Å3) | 858.59 (15) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 1.93 |
Crystal size (mm) | 0.07 × 0.07 × 0.03 |
Data collection | |
Diffractometer | Bruker APEX CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2003) |
Tmin, Tmax | 0.872, 0.937 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4550, 3151, 2361 |
Rint | 0.039 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.071, 0.155, 1.10 |
No. of reflections | 3151 |
No. of parameters | 274 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.87, −0.58 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 2003), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H5A···O2i | 0.87 | 2.05 | 2.842 (7) | 152 |
O5—H5B···O4ii | 0.90 | 1.95 | 2.824 (7) | 163 |
O6—H6A···O4i | 0.88 (5) | 2.26 (6) | 3.104 (8) | 161 (7) |
O6—H6B···O4ii | 0.89 (3) | 2.16 (3) | 3.042 (8) | 172 (10) |
O7—H7A···O5iii | 0.85 | 2.24 | 2.977 (8) | 145 |
O7—H7B···O3iv | 0.87 | 1.97 | 2.829 (7) | 170 |
Symmetry codes: (i) x−1, y, z; (ii) −x+1, −y, −z+1; (iii) −x+1, −y+1, −z+1; (iv) x, y+1, z. |
Acknowledgements
This work was supported by the National Analytical Research Center of Electrochemistry and Spectroscopy, Changchun Institute of Applied Chemistry, Changchun, China.
References
Bruker (1998). SMART. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bruker (2003). SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsion, USA. Google Scholar
King, P., Clerac, R., Anson, C. E., Coulon, C. & Powell, A. K. (2003). Inorg. Chem. 42, 3492–3500. Web of Science CSD CrossRef PubMed CAS Google Scholar
Kitagawa, S., Kitaura, R. & Noro, S. (2004). Angew. Chem. Int. Ed. 43, 2334–2375. Web of Science CrossRef CAS Google Scholar
Li, X.-H. (2005). Acta Cryst. E61, m2405–m2407. Web of Science CSD CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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The design and synthesis of novel coordination architectures has attracted wide attention because of their intriguing network topologies and potential applications as new classes of materials (Kitagawa et al., 2004). 3,5-pyrazoledicarboxylate has several potential coordination sites: both nitrogen atoms of the pyrazole ring and the four carboxylate oxygen atoms, which are highly accessible to metal ions (Li, 2005). However, divalent copper ions have rarely been coordinated with 3,5-pyrazoledicarboxylic acid under ambient temperatures (King et al., 2003). In this study, we chose 3,5-pyrazoledicarboxylic acid and 1,10-phenanthroline as mixed ligands to obtain blue crystals of the title compound (I), which as shown in Fig. 1 is a copper(II) trimer.
The central copper atom, Cu(1), lies on a crystallographic inversion center, and has a six-coordinate octahedral geometry, in the which two oxygen atoms and two nitrogen atoms from two 3,5-pyrazoledicarboxylate ligands occupy the equatorial plane. The axial coordination sites are occupied by two water molecules. The Cu(1)—N/O bond distances span a very large range from 1.974 (5) to 2.595 (5) Å. The other two symmetry-related copper atoms, Cu(2), have pentacoordinate square-pyramidal geometry: a pyrazole nitrogen N(2) and a carboxylate oxygen O(3) from one 3,5-pyrazoledicarboxylato ligand occupy two coordination sites, two nitrogen atoms from one 1,10-phenanthroline chelate the Cu(2) atoms, while the remaining position is occupied by a water molecule. The Cu(2)—N/O bond distances range from 1.979 (6) to 2.171 (5) Å. The 3,5-pyrazoledicarboxylate ligand is nearly planar, with greatest deviation from the mean plane defined by the pyrazole ring by the carboxylate groups with values ranging from 0.0015 (1) to 0.0937 (1) Å. It can be seen that the ligand bite angles at the two different copper centers Cu(1) and Cu(2) are similar, 80.9 (3)° and 82.5 (4)°, respectively. This implies that the 3,5-pyrazoledicarboxylate ligand is a fairly rigid ligand and retains its integrity on metal chelation.
In the asymmetric unit, there is one lattice water molecule, O(7), and because each trimer contains four coordinated water molecules and carboxylate oxygen atoms, a complex network of hydrogen-bonding interactions is formed. Each 3,5-pyrazoledicarboxylato contains four hydrogen bond acceptors, while each coordinated water molecule acts as both a two hydrogen bond donor and a hydrogen bond acceptor, and the lattice water molecule is only a two hydrogen bond donor. In the crystal structure, π-π interactions also exist between neighbouring 1,10-phenanthroline ligands, with the nearest atom-to-atom distance between neighbouring 1,10-phenanthroline ligands being 3.363 (3) Å. The strong hydrogen bonding interactions as well as π-π interactions extend the crystal structure into a three-dimensional supramolecular network (Fig. 2).