metal-organic compounds
{N-[(2-Oxido-1-naphthyl)methylidene]serinato-κ3O,N,O′}(1,10-phenanthroline-κ2N,N′)copper(II)
aSchool of Chemistry and Chemical Engineering, Liaocheng University, Shandong 252059, People's Republic of China
*Correspondence e-mail: lilianzhi1963@yahoo.com.cn
In the title complex, [Cu(C14H11NO4)(C12H8N2)], the tridentate Schiff base ligand is derived from the condensation of 2-hydroxy-1-naphthaldehyde and L-serine. The CuII atom is five-coordinated by one N atom and two O atoms from the Schiff base ligand and by two N atoms from a 1,10-phenanthroline ligand in a distorted square-pyramidal geometry. In the the combination of intermolecular O—H⋯O and C—H⋯O hydrogen bonds results in a two-dimensional network structure parallel to (001).
Related literature
For general background to Schiff base complexes, see: Garnovski et al. (1993); Kalagouda et al. (2006); Wang et al. (1999). For our previous work on amino Schiff base complexes, see: Qiu et al. (2008); Wang et al. (2007).
Experimental
Crystal data
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536810012675/hy2297sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810012675/hy2297Isup2.hkl
L-Serine (1 mmol, 105.1 mg) and potassium hydroxide (1 mmol, 56.1 mg) were dissovlved in hot methanol (5 ml) and added in portions to a methanol solution of 2-hydroxy-1-naphthaldehyde (1 mmol, 172.19 mg). The mixture was then stirred at 323 K for 2 h. Subsequently, an aqueous solution (2 ml) of cupric acetate monohydrate (1 mmol, 199.7 mg) was added dropwise and the mixture stirred for 3 h. Finally, a methanol solution (5 ml) of 1,10-phenanthroline (1 mmol, 198.2 mg) was added dropwise to the above solution and then stirred for 3 h. The solution was held at room temperature for 15 d, whereupon green needle crystals suitable for X-ray diffraction were obtained.
H atoms were positioned geometrically and refined as riding atoms, with C—H = 0.93–0.98 Å and O—H = 0.82 Å, and with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(O) for hydroxyl group.
Amino acids are very important biomolecules because of their roles in biochemical reactions. Schiff base complexes have continued to play the role of the most important stereochemical models in main group and transition metal coordination chemistry with their easy preparation and structural variation (Garnovski et al., 1993). So efforts have been made to synthesize and characterize amino Schiff base complexes with transition metals, and more and more these new complexes have been reported (Kalagouda et al., 2006; Wang et al., 1999). As part of a series of our study (Qiu et al. 2008; Wang et al., 2007), we report here the synthesis and
of a new copper(II) complex with a tridentate Schiff base ligand derived from the condensation of 2-hydroxy-1-naphthaldehyde and L-serine.The molecular structure of the title complex is shown in Fig. 1. The CuII atom is five-coordinated with two O atom and one N atom from a tridentate Schiff base ligand, and two N atoms from a 1,10-phenanthroline ligand, resulting in a distorted square-pyramidal geometry. O1, O4, N1 and N2 locate in a basal equatorial plane and N3 is at the apical position. The CuII atom deviates from the basal equatorial plane by 0.2005 (18) Å toward N3 atom, with a significantly longer Cu1—N3 bond distance [2.297 (4) Å] (Table 1). The apical Cu1—N3 bond deviates greatly from the right position to close the Cu1—N2 bond [N2—Cu1—N3 = 77.87 (14)°]. Additionally, the tridentate Schiff base ligand coordinates to the Cu atom, forming two chelating rings (Cu1, O1, C1, C2, N1 ring and Cu1, N1, C4, C5, C6, O4 ring). The two rings have dihedral angles of 10.84 (21) and 6.74 (21)° to the equatorial plane, respectively. The 1,10-phenanthroline chelating ring (Cu1, N2, C19, C20, N3) is almost perpendicular to the basal equatorial plane [dihedral angle = 85.91 (9)°]. In the crystal, the combination of intermolecular O—H···O and C—H···O hydrogen bonds (Table 2) leads to a two-dimensional network (Fig. 2).
For general background to Schiff base complexes, see: Garnovski et al. (1993); Kalagouda et al. (2006); Wang et al. (1999). For our previous work on amino Schiff base complexes, see: Qiu et al. (2008); Wang et al. (2007).
Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008) and DIAMOND (Brandenburg, 1999); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The molecular structure of the title compound, showing 30% probability displacement ellipsoids. | |
Fig. 2. Packing diagram of the title compound with hydrogen bonds shown as dashed lines. |
[Cu(C14H11NO4)(C12H8N2)] | F(000) = 514 |
Mr = 500.98 | Dx = 1.519 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 746 reflections |
a = 10.7302 (12) Å | θ = 3.3–25.2° |
b = 6.4687 (6) Å | µ = 1.04 mm−1 |
c = 15.7930 (17) Å | T = 298 K |
β = 91.924 (1)° | Needle, green |
V = 1095.6 (2) Å3 | 0.43 × 0.16 × 0.08 mm |
Z = 2 |
Bruker SMART 1000 CCD area-detector diffractometer | 3633 independent reflections |
Radiation source: fine-focus sealed tube | 3022 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.031 |
φ and ω scans | θmax = 25.0°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −12→11 |
Tmin = 0.664, Tmax = 0.922 | k = −7→7 |
5555 measured reflections | l = −18→15 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.041 | H-atom parameters constrained |
wR(F2) = 0.094 | w = 1/[σ2(Fo2) + (0.0491P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.97 | (Δ/σ)max = 0.001 |
3633 reflections | Δρmax = 0.41 e Å−3 |
307 parameters | Δρmin = −0.25 e Å−3 |
1 restraint | Absolute structure: Flack (1983), with 1529 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: −0.023 (17) |
[Cu(C14H11NO4)(C12H8N2)] | V = 1095.6 (2) Å3 |
Mr = 500.98 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 10.7302 (12) Å | µ = 1.04 mm−1 |
b = 6.4687 (6) Å | T = 298 K |
c = 15.7930 (17) Å | 0.43 × 0.16 × 0.08 mm |
β = 91.924 (1)° |
Bruker SMART 1000 CCD area-detector diffractometer | 3633 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 3022 reflections with I > 2σ(I) |
Tmin = 0.664, Tmax = 0.922 | Rint = 0.031 |
5555 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | H-atom parameters constrained |
wR(F2) = 0.094 | Δρmax = 0.41 e Å−3 |
S = 0.97 | Δρmin = −0.25 e Å−3 |
3633 reflections | Absolute structure: Flack (1983), with 1529 Friedel pairs |
307 parameters | Absolute structure parameter: −0.023 (17) |
1 restraint |
x | y | z | Uiso*/Ueq | ||
Cu1 | 0.85224 (4) | 0.14981 (9) | 0.75536 (3) | 0.04385 (16) | |
N1 | 0.6939 (3) | 0.2834 (6) | 0.7406 (2) | 0.0385 (8) | |
N2 | 1.0094 (3) | −0.0200 (6) | 0.7612 (2) | 0.0472 (9) | |
N3 | 0.9778 (3) | 0.3251 (6) | 0.6648 (2) | 0.0455 (9) | |
O1 | 0.7806 (3) | −0.0536 (5) | 0.6722 (2) | 0.0536 (8) | |
O2 | 0.6057 (4) | −0.1294 (5) | 0.5986 (2) | 0.0629 (10) | |
O3 | 0.5115 (3) | 0.4941 (6) | 0.6180 (2) | 0.0682 (10) | |
H3 | 0.5463 | 0.6051 | 0.6103 | 0.102* | |
O4 | 0.8869 (3) | 0.2791 (5) | 0.86299 (18) | 0.0534 (8) | |
C1 | 0.6697 (4) | −0.0168 (7) | 0.6467 (3) | 0.0455 (11) | |
C2 | 0.6124 (3) | 0.1876 (7) | 0.6743 (2) | 0.0394 (11) | |
H2 | 0.5311 | 0.1589 | 0.6983 | 0.047* | |
C3 | 0.5927 (5) | 0.3310 (8) | 0.5981 (3) | 0.0497 (12) | |
H3A | 0.6723 | 0.3871 | 0.5820 | 0.060* | |
H3B | 0.5578 | 0.2532 | 0.5505 | 0.060* | |
C4 | 0.6521 (4) | 0.4288 (7) | 0.7864 (3) | 0.0406 (10) | |
H4 | 0.5715 | 0.4751 | 0.7738 | 0.049* | |
C5 | 0.7188 (4) | 0.5272 (7) | 0.8559 (3) | 0.0412 (10) | |
C6 | 0.8261 (4) | 0.4355 (8) | 0.8927 (3) | 0.0463 (11) | |
C7 | 0.8738 (4) | 0.5219 (9) | 0.9718 (3) | 0.0568 (13) | |
H7 | 0.9410 | 0.4577 | 0.9997 | 0.068* | |
C8 | 0.8240 (4) | 0.6931 (9) | 1.0064 (3) | 0.0602 (15) | |
H8 | 0.8578 | 0.7431 | 1.0574 | 0.072* | |
C9 | 0.7211 (4) | 0.7988 (8) | 0.9669 (3) | 0.0524 (12) | |
C10 | 0.6680 (4) | 0.7142 (6) | 0.8910 (3) | 0.0434 (12) | |
C11 | 0.5671 (4) | 0.8226 (8) | 0.8529 (3) | 0.0534 (12) | |
H11 | 0.5300 | 0.7711 | 0.8032 | 0.064* | |
C12 | 0.5216 (5) | 1.0034 (8) | 0.8871 (3) | 0.0596 (13) | |
H12 | 0.4540 | 1.0702 | 0.8607 | 0.071* | |
C13 | 0.5764 (5) | 1.0859 (8) | 0.9608 (3) | 0.0642 (15) | |
H13 | 0.5467 | 1.2085 | 0.9833 | 0.077* | |
C14 | 0.6735 (5) | 0.9856 (9) | 0.9992 (3) | 0.0636 (14) | |
H14 | 0.7099 | 1.0412 | 1.0484 | 0.076* | |
C15 | 1.0230 (5) | −0.1874 (8) | 0.8073 (3) | 0.0621 (14) | |
H15 | 0.9624 | −0.2191 | 0.8460 | 0.075* | |
C16 | 1.1243 (5) | −0.3193 (11) | 0.8008 (4) | 0.0776 (17) | |
H16 | 1.1298 | −0.4381 | 0.8339 | 0.093* | |
C17 | 1.2155 (5) | −0.2738 (9) | 0.7458 (4) | 0.0780 (18) | |
H17 | 1.2840 | −0.3608 | 0.7415 | 0.094* | |
C18 | 1.2056 (4) | −0.0959 (8) | 0.6958 (3) | 0.0564 (13) | |
C19 | 1.0996 (4) | 0.0292 (8) | 0.7055 (3) | 0.0481 (11) | |
C20 | 1.0833 (4) | 0.2127 (7) | 0.6554 (3) | 0.0429 (12) | |
C21 | 1.1751 (4) | 0.2679 (9) | 0.5972 (3) | 0.0548 (12) | |
C22 | 1.1553 (5) | 0.4525 (10) | 0.5521 (3) | 0.0694 (16) | |
H22 | 1.2140 | 0.4970 | 0.5141 | 0.083* | |
C23 | 1.0512 (5) | 0.5663 (8) | 0.5637 (3) | 0.0671 (15) | |
H23 | 1.0383 | 0.6891 | 0.5340 | 0.080* | |
C24 | 0.9638 (4) | 0.4976 (8) | 0.6204 (3) | 0.0552 (12) | |
H24 | 0.8924 | 0.5764 | 0.6274 | 0.066* | |
C25 | 1.2954 (4) | −0.0334 (11) | 0.6350 (4) | 0.0730 (17) | |
H25 | 1.3658 | −0.1147 | 0.6282 | 0.088* | |
C26 | 1.2811 (4) | 0.1357 (14) | 0.5886 (3) | 0.0708 (15) | |
H26 | 1.3409 | 0.1694 | 0.5496 | 0.085* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cu1 | 0.0443 (3) | 0.0443 (3) | 0.0434 (3) | 0.0024 (3) | 0.00652 (18) | −0.0022 (3) |
N1 | 0.0436 (18) | 0.036 (2) | 0.0364 (18) | −0.0015 (16) | 0.0031 (15) | −0.0063 (16) |
N2 | 0.050 (2) | 0.046 (2) | 0.046 (2) | −0.0002 (18) | −0.0006 (17) | 0.0024 (19) |
N3 | 0.052 (2) | 0.042 (2) | 0.043 (2) | −0.0019 (19) | 0.0020 (16) | 0.0027 (18) |
O1 | 0.0538 (19) | 0.048 (2) | 0.059 (2) | 0.0080 (16) | 0.0002 (16) | −0.0130 (17) |
O2 | 0.075 (2) | 0.048 (2) | 0.066 (2) | −0.002 (2) | −0.0035 (19) | −0.0200 (19) |
O3 | 0.068 (2) | 0.047 (2) | 0.089 (3) | 0.0030 (19) | −0.0033 (19) | 0.002 (2) |
O4 | 0.0529 (17) | 0.063 (2) | 0.0442 (17) | 0.0077 (17) | −0.0007 (14) | −0.0051 (16) |
C1 | 0.054 (3) | 0.040 (3) | 0.043 (2) | −0.006 (2) | 0.008 (2) | −0.006 (2) |
C2 | 0.0393 (19) | 0.040 (3) | 0.039 (2) | −0.005 (2) | 0.0038 (16) | −0.011 (2) |
C3 | 0.058 (3) | 0.046 (3) | 0.045 (3) | −0.006 (3) | 0.000 (2) | 0.002 (2) |
C4 | 0.039 (2) | 0.041 (3) | 0.042 (2) | −0.002 (2) | 0.0012 (18) | −0.002 (2) |
C5 | 0.046 (2) | 0.042 (3) | 0.036 (2) | −0.006 (2) | 0.0052 (19) | −0.004 (2) |
C6 | 0.047 (2) | 0.053 (3) | 0.039 (2) | −0.007 (2) | 0.0077 (19) | −0.004 (2) |
C7 | 0.051 (3) | 0.072 (4) | 0.047 (3) | −0.001 (3) | −0.003 (2) | −0.006 (3) |
C8 | 0.066 (3) | 0.069 (5) | 0.045 (2) | −0.011 (3) | −0.002 (2) | −0.022 (3) |
C9 | 0.057 (3) | 0.050 (3) | 0.051 (3) | −0.010 (2) | 0.012 (2) | −0.014 (2) |
C10 | 0.054 (2) | 0.042 (3) | 0.036 (2) | −0.007 (2) | 0.0115 (19) | −0.0030 (18) |
C11 | 0.064 (3) | 0.052 (3) | 0.045 (3) | −0.004 (3) | 0.011 (2) | −0.003 (2) |
C12 | 0.073 (3) | 0.048 (3) | 0.058 (3) | 0.004 (3) | 0.018 (3) | −0.003 (3) |
C13 | 0.085 (4) | 0.047 (4) | 0.061 (3) | −0.002 (3) | 0.024 (3) | −0.013 (2) |
C14 | 0.075 (3) | 0.058 (4) | 0.058 (3) | −0.013 (3) | 0.010 (3) | −0.024 (3) |
C15 | 0.072 (3) | 0.054 (3) | 0.060 (3) | −0.003 (3) | −0.012 (3) | 0.011 (3) |
C16 | 0.087 (3) | 0.054 (4) | 0.090 (4) | 0.010 (4) | −0.035 (3) | 0.014 (4) |
C17 | 0.057 (3) | 0.068 (4) | 0.106 (5) | 0.015 (3) | −0.031 (3) | −0.014 (3) |
C18 | 0.041 (3) | 0.055 (3) | 0.071 (3) | 0.006 (2) | −0.012 (2) | −0.017 (3) |
C19 | 0.039 (2) | 0.052 (3) | 0.053 (3) | −0.001 (2) | −0.005 (2) | −0.014 (2) |
C20 | 0.037 (2) | 0.049 (3) | 0.043 (2) | −0.0048 (19) | 0.0044 (18) | −0.006 (2) |
C21 | 0.048 (3) | 0.065 (3) | 0.052 (3) | −0.014 (3) | 0.008 (2) | −0.010 (3) |
C22 | 0.076 (4) | 0.080 (4) | 0.053 (3) | −0.033 (3) | 0.008 (3) | 0.000 (3) |
C23 | 0.087 (4) | 0.057 (4) | 0.057 (3) | −0.019 (3) | −0.008 (3) | 0.013 (2) |
C24 | 0.060 (3) | 0.047 (3) | 0.058 (3) | −0.004 (2) | −0.010 (2) | 0.004 (2) |
C25 | 0.041 (3) | 0.082 (5) | 0.097 (5) | 0.003 (3) | 0.009 (3) | −0.035 (4) |
C26 | 0.049 (3) | 0.092 (4) | 0.072 (3) | −0.013 (4) | 0.018 (2) | −0.027 (5) |
Cu1—N1 | 1.914 (3) | C9—C14 | 1.415 (7) |
Cu1—N2 | 2.012 (4) | C9—C10 | 1.419 (6) |
Cu1—N3 | 2.297 (4) | C10—C11 | 1.407 (6) |
Cu1—O1 | 1.994 (3) | C11—C12 | 1.385 (7) |
Cu1—O4 | 1.920 (3) | C11—H11 | 0.9300 |
N1—C4 | 1.278 (5) | C12—C13 | 1.393 (7) |
N1—C2 | 1.477 (5) | C12—H12 | 0.9300 |
N2—C15 | 1.310 (6) | C13—C14 | 1.353 (7) |
N2—C19 | 1.367 (6) | C13—H13 | 0.9300 |
N3—C24 | 1.324 (6) | C14—H14 | 0.9300 |
N3—C20 | 1.358 (5) | C15—C16 | 1.388 (7) |
O1—C1 | 1.267 (5) | C15—H15 | 0.9300 |
O2—C1 | 1.242 (5) | C16—C17 | 1.363 (8) |
O3—C3 | 1.411 (6) | C16—H16 | 0.9300 |
O3—H3 | 0.8200 | C17—C18 | 1.398 (8) |
O4—C6 | 1.300 (5) | C17—H17 | 0.9300 |
C1—C2 | 1.527 (6) | C18—C19 | 1.408 (6) |
C2—C3 | 1.528 (6) | C18—C25 | 1.441 (8) |
C2—H2 | 0.9800 | C19—C20 | 1.434 (6) |
C3—H3A | 0.9700 | C20—C21 | 1.415 (6) |
C3—H3B | 0.9700 | C21—C22 | 1.403 (8) |
C4—C5 | 1.438 (6) | C21—C26 | 1.433 (8) |
C4—H4 | 0.9300 | C22—C23 | 1.356 (8) |
C5—C6 | 1.404 (6) | C22—H22 | 0.9300 |
C5—C10 | 1.445 (6) | C23—C24 | 1.391 (7) |
C6—C7 | 1.447 (6) | C23—H23 | 0.9300 |
C7—C8 | 1.353 (7) | C24—H24 | 0.9300 |
C7—H7 | 0.9300 | C25—C26 | 1.323 (9) |
C8—C9 | 1.424 (7) | C25—H25 | 0.9300 |
C8—H8 | 0.9300 | C26—H26 | 0.9300 |
N1—Cu1—O4 | 93.23 (13) | C14—C9—C8 | 122.4 (5) |
N1—Cu1—O1 | 84.06 (14) | C10—C9—C8 | 117.9 (4) |
O4—Cu1—O1 | 158.33 (14) | C11—C10—C9 | 116.8 (4) |
N1—Cu1—N2 | 172.54 (16) | C11—C10—C5 | 123.2 (4) |
O4—Cu1—N2 | 93.43 (14) | C9—C10—C5 | 120.0 (4) |
O1—Cu1—N2 | 88.51 (14) | C12—C11—C10 | 122.0 (4) |
N1—Cu1—N3 | 103.78 (14) | C12—C11—H11 | 119.0 |
O4—Cu1—N3 | 103.66 (14) | C10—C11—H11 | 119.0 |
O1—Cu1—N3 | 97.86 (13) | C11—C12—C13 | 120.3 (5) |
N2—Cu1—N3 | 77.87 (14) | C11—C12—H12 | 119.8 |
C4—N1—C2 | 120.0 (3) | C13—C12—H12 | 119.8 |
C4—N1—Cu1 | 126.2 (3) | C14—C13—C12 | 119.2 (5) |
C2—N1—Cu1 | 113.5 (3) | C14—C13—H13 | 120.4 |
C15—N2—C19 | 118.8 (4) | C12—C13—H13 | 120.4 |
C15—N2—Cu1 | 123.7 (3) | C13—C14—C9 | 122.0 (5) |
C19—N2—Cu1 | 117.0 (3) | C13—C14—H14 | 119.0 |
C24—N3—C20 | 118.2 (4) | C9—C14—H14 | 119.0 |
C24—N3—Cu1 | 133.4 (3) | N2—C15—C16 | 122.7 (5) |
C20—N3—Cu1 | 108.2 (3) | N2—C15—H15 | 118.7 |
C1—O1—Cu1 | 115.0 (3) | C16—C15—H15 | 118.7 |
C3—O3—H3 | 109.5 | C17—C16—C15 | 119.7 (6) |
C6—O4—Cu1 | 125.0 (3) | C17—C16—H16 | 120.2 |
O2—C1—O1 | 125.3 (4) | C15—C16—H16 | 120.2 |
O2—C1—C2 | 117.5 (4) | C16—C17—C18 | 119.7 (5) |
O1—C1—C2 | 117.1 (4) | C16—C17—H17 | 120.2 |
N1—C2—C1 | 109.3 (3) | C18—C17—H17 | 120.2 |
N1—C2—C3 | 111.4 (4) | C17—C18—C19 | 117.3 (5) |
C1—C2—C3 | 110.3 (3) | C17—C18—C25 | 124.6 (5) |
N1—C2—H2 | 108.6 | C19—C18—C25 | 118.1 (5) |
C1—C2—H2 | 108.6 | N2—C19—C18 | 121.8 (5) |
C3—C2—H2 | 108.6 | N2—C19—C20 | 118.2 (4) |
O3—C3—C2 | 110.4 (4) | C18—C19—C20 | 120.0 (4) |
O3—C3—H3A | 109.6 | N3—C20—C21 | 122.5 (4) |
C2—C3—H3A | 109.6 | N3—C20—C19 | 118.0 (4) |
O3—C3—H3B | 109.6 | C21—C20—C19 | 119.5 (4) |
C2—C3—H3B | 109.6 | C22—C21—C20 | 116.6 (5) |
H3A—C3—H3B | 108.1 | C22—C21—C26 | 124.5 (5) |
N1—C4—C5 | 125.7 (4) | C20—C21—C26 | 118.9 (5) |
N1—C4—H4 | 117.2 | C23—C22—C21 | 120.3 (5) |
C5—C4—H4 | 117.2 | C23—C22—H22 | 119.8 |
C6—C5—C4 | 120.6 (4) | C21—C22—H22 | 119.8 |
C6—C5—C10 | 120.6 (4) | C22—C23—C24 | 119.3 (5) |
C4—C5—C10 | 118.6 (4) | C22—C23—H23 | 120.3 |
O4—C6—C5 | 126.5 (4) | C24—C23—H23 | 120.3 |
O4—C6—C7 | 116.4 (4) | N3—C24—C23 | 122.9 (5) |
C5—C6—C7 | 117.1 (4) | N3—C24—H24 | 118.5 |
C8—C7—C6 | 122.1 (5) | C23—C24—H24 | 118.5 |
C8—C7—H7 | 118.9 | C26—C25—C18 | 122.3 (5) |
C6—C7—H7 | 118.9 | C26—C25—H25 | 118.9 |
C7—C8—C9 | 121.8 (4) | C18—C25—H25 | 118.9 |
C7—C8—H8 | 119.1 | C25—C26—C21 | 121.2 (5) |
C9—C8—H8 | 119.1 | C25—C26—H26 | 119.4 |
C14—C9—C10 | 119.6 (5) | C21—C26—H26 | 119.4 |
O4—Cu1—N1—C4 | 9.5 (4) | C7—C8—C9—C10 | 2.6 (7) |
O1—Cu1—N1—C4 | 168.0 (4) | C14—C9—C10—C11 | −1.2 (6) |
N3—Cu1—N1—C4 | −95.4 (4) | C8—C9—C10—C11 | −179.5 (4) |
O4—Cu1—N1—C2 | −164.0 (3) | C14—C9—C10—C5 | 177.9 (4) |
O1—Cu1—N1—C2 | −5.6 (3) | C8—C9—C10—C5 | −0.4 (6) |
N3—Cu1—N1—C2 | 91.1 (3) | C6—C5—C10—C11 | 174.5 (4) |
O4—Cu1—N2—C15 | 77.5 (4) | C4—C5—C10—C11 | −10.0 (6) |
O1—Cu1—N2—C15 | −80.9 (4) | C6—C5—C10—C9 | −4.5 (6) |
N3—Cu1—N2—C15 | −179.3 (4) | C4—C5—C10—C9 | 170.9 (4) |
O4—Cu1—N2—C19 | −111.2 (3) | C9—C10—C11—C12 | 0.2 (6) |
O1—Cu1—N2—C19 | 90.4 (3) | C5—C10—C11—C12 | −178.9 (4) |
N3—Cu1—N2—C19 | −7.9 (3) | C10—C11—C12—C13 | 0.9 (7) |
N1—Cu1—N3—C24 | 10.5 (4) | C11—C12—C13—C14 | −1.0 (7) |
O4—Cu1—N3—C24 | −86.3 (4) | C12—C13—C14—C9 | 0.0 (7) |
O1—Cu1—N3—C24 | 96.3 (4) | C10—C9—C14—C13 | 1.2 (7) |
N2—Cu1—N3—C24 | −176.9 (4) | C8—C9—C14—C13 | 179.4 (5) |
N1—Cu1—N3—C20 | −165.7 (3) | C19—N2—C15—C16 | −1.2 (7) |
O4—Cu1—N3—C20 | 97.4 (3) | Cu1—N2—C15—C16 | 170.0 (4) |
O1—Cu1—N3—C20 | −80.0 (3) | N2—C15—C16—C17 | 1.2 (8) |
N2—Cu1—N3—C20 | 6.8 (3) | C15—C16—C17—C18 | −0.6 (8) |
N1—Cu1—O1—C1 | −0.8 (3) | C16—C17—C18—C19 | 0.1 (8) |
O4—Cu1—O1—C1 | 83.0 (5) | C16—C17—C18—C25 | −179.4 (5) |
N2—Cu1—O1—C1 | 178.6 (3) | C15—N2—C19—C18 | 0.6 (7) |
N3—Cu1—O1—C1 | −103.9 (3) | Cu1—N2—C19—C18 | −171.2 (3) |
N1—Cu1—O4—C6 | −13.8 (4) | C15—N2—C19—C20 | 179.9 (4) |
O1—Cu1—O4—C6 | −95.8 (5) | Cu1—N2—C19—C20 | 8.1 (5) |
N2—Cu1—O4—C6 | 169.6 (3) | C17—C18—C19—N2 | 0.0 (7) |
N3—Cu1—O4—C6 | 91.3 (3) | C25—C18—C19—N2 | 179.4 (4) |
Cu1—O1—C1—O2 | −176.0 (4) | C17—C18—C19—C20 | −179.3 (4) |
Cu1—O1—C1—C2 | 6.9 (5) | C25—C18—C19—C20 | 0.1 (6) |
C4—N1—C2—C1 | −164.0 (4) | C24—N3—C20—C21 | −3.1 (6) |
Cu1—N1—C2—C1 | 10.0 (4) | Cu1—N3—C20—C21 | 173.8 (4) |
C4—N1—C2—C3 | 73.8 (5) | C24—N3—C20—C19 | 178.2 (4) |
Cu1—N1—C2—C3 | −112.2 (3) | Cu1—N3—C20—C19 | −4.9 (4) |
O2—C1—C2—N1 | 171.6 (4) | N2—C19—C20—N3 | −1.4 (6) |
O1—C1—C2—N1 | −11.1 (5) | C18—C19—C20—N3 | 177.9 (4) |
O2—C1—C2—C3 | −65.5 (5) | N2—C19—C20—C21 | 179.9 (4) |
O1—C1—C2—C3 | 111.8 (4) | C18—C19—C20—C21 | −0.8 (6) |
N1—C2—C3—O3 | −73.8 (4) | N3—C20—C21—C22 | 3.2 (7) |
C1—C2—C3—O3 | 164.6 (4) | C19—C20—C21—C22 | −178.1 (4) |
C2—N1—C4—C5 | 176.3 (4) | N3—C20—C21—C26 | −177.3 (4) |
Cu1—N1—C4—C5 | 3.1 (6) | C19—C20—C21—C26 | 1.4 (7) |
N1—C4—C5—C6 | −16.1 (7) | C20—C21—C22—C23 | −1.4 (8) |
N1—C4—C5—C10 | 168.5 (4) | C26—C21—C22—C23 | 179.1 (5) |
Cu1—O4—C6—C5 | 5.7 (6) | C21—C22—C23—C24 | −0.4 (8) |
Cu1—O4—C6—C7 | −174.7 (3) | C20—N3—C24—C23 | 1.1 (7) |
C4—C5—C6—O4 | 11.2 (7) | Cu1—N3—C24—C23 | −174.8 (3) |
C10—C5—C6—O4 | −173.4 (4) | C22—C23—C24—N3 | 0.6 (8) |
C4—C5—C6—C7 | −168.4 (4) | C17—C18—C25—C26 | 179.3 (5) |
C10—C5—C6—C7 | 7.0 (6) | C19—C18—C25—C26 | −0.1 (8) |
O4—C6—C7—C8 | 175.5 (4) | C18—C25—C26—C21 | 0.7 (9) |
C5—C6—C7—C8 | −4.8 (7) | C22—C21—C26—C25 | 178.1 (5) |
C6—C7—C8—C9 | 0.0 (7) | C20—C21—C26—C25 | −1.4 (8) |
C7—C8—C9—C14 | −175.6 (5) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O2i | 0.82 | 1.84 | 2.659 (5) | 172 |
C25—H25···O2ii | 0.93 | 2.63 | 3.454 (6) | 148 |
Symmetry codes: (i) x, y+1, z; (ii) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | [Cu(C14H11NO4)(C12H8N2)] |
Mr | 500.98 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 298 |
a, b, c (Å) | 10.7302 (12), 6.4687 (6), 15.7930 (17) |
β (°) | 91.924 (1) |
V (Å3) | 1095.6 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.04 |
Crystal size (mm) | 0.43 × 0.16 × 0.08 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD area-detector |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.664, 0.922 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5555, 3633, 3022 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.094, 0.97 |
No. of reflections | 3633 |
No. of parameters | 307 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.41, −0.25 |
Absolute structure | Flack (1983), with 1529 Friedel pairs |
Absolute structure parameter | −0.023 (17) |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008) and DIAMOND (Brandenburg, 1999), SHELXTL (Sheldrick, 2008).
Cu1—N1 | 1.914 (3) | Cu1—O1 | 1.994 (3) |
Cu1—N2 | 2.012 (4) | Cu1—O4 | 1.920 (3) |
Cu1—N3 | 2.297 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O2i | 0.82 | 1.84 | 2.659 (5) | 172 |
C25—H25···O2ii | 0.93 | 2.63 | 3.454 (6) | 148 |
Symmetry codes: (i) x, y+1, z; (ii) x+1, y, z. |
Acknowledgements
The authors thank the Natural Science Foundation of Shandong Province for a research grant (grant No. Y2004B02).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Amino acids are very important biomolecules because of their roles in biochemical reactions. Schiff base complexes have continued to play the role of the most important stereochemical models in main group and transition metal coordination chemistry with their easy preparation and structural variation (Garnovski et al., 1993). So efforts have been made to synthesize and characterize amino Schiff base complexes with transition metals, and more and more these new complexes have been reported (Kalagouda et al., 2006; Wang et al., 1999). As part of a series of our study (Qiu et al. 2008; Wang et al., 2007), we report here the synthesis and crystal structure of a new copper(II) complex with a tridentate Schiff base ligand derived from the condensation of 2-hydroxy-1-naphthaldehyde and L-serine.
The molecular structure of the title complex is shown in Fig. 1. The CuII atom is five-coordinated with two O atom and one N atom from a tridentate Schiff base ligand, and two N atoms from a 1,10-phenanthroline ligand, resulting in a distorted square-pyramidal geometry. O1, O4, N1 and N2 locate in a basal equatorial plane and N3 is at the apical position. The CuII atom deviates from the basal equatorial plane by 0.2005 (18) Å toward N3 atom, with a significantly longer Cu1—N3 bond distance [2.297 (4) Å] (Table 1). The apical Cu1—N3 bond deviates greatly from the right position to close the Cu1—N2 bond [N2—Cu1—N3 = 77.87 (14)°]. Additionally, the tridentate Schiff base ligand coordinates to the Cu atom, forming two chelating rings (Cu1, O1, C1, C2, N1 ring and Cu1, N1, C4, C5, C6, O4 ring). The two rings have dihedral angles of 10.84 (21) and 6.74 (21)° to the equatorial plane, respectively. The 1,10-phenanthroline chelating ring (Cu1, N2, C19, C20, N3) is almost perpendicular to the basal equatorial plane [dihedral angle = 85.91 (9)°]. In the crystal, the combination of intermolecular O—H···O and C—H···O hydrogen bonds (Table 2) leads to a two-dimensional network (Fig. 2).