organic compounds
2-(4-Methoxyphenyl)-6-trifluoromethyl-1H-pyrrolo[3,2-c]quinoline monohydrate
aDepartment of Chemistry, Adam Mickiewicz University, Grunwaldzka 6, 60-780 Poznań, Poland, bDepartment of Studies in Chemistry, University of Mysore, Manasagangotri, Mysore 570 006, India, and cDepartment of Studies in Chemistry, Mangalore University, Mangalagangotri 574 199, India
*Correspondence e-mail: mkubicki@amu.edu.pl
In the title compound, C19H13F3N2O·H2O, the phenyl and pyrroloquinoline ring system are close to coplanar [dihedral angle = 10.94 (4)°]. The methoxy group also is almost coplanar with the phenyl ring [5.4 (1)°]. In the N—H⋯O(water) and water–quinoline O—H⋯N hydrogen bonds build up a supramolecular chain-like arrangement along [001]. The remaining H atom of the water molecule does not take part in classical hydrogen bonds. Instead, this O—H bond points toward the center of the phenyl ring of a neighbouring molecule. Weak C—H⋯O and C—H⋯π interactions are also present.
Related literature
For a description of the Cambridge Structural Database, see: Allen (2002). For O—H⋯π bonds, see: Atwood et al. (1991). For the graph-set description of hydrogen-bond systems, see: Bernstein et al. (1995). For the influence of substituents on the geometry of aromatic rings, see: Domenicano (1988). For a similar synthesis, see: Dutkiewicz et al. (2010). For related structures, see: Fan & Chen (1987); Lynch et al. (2001); Lynch & McClenaghan (2002).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Stereochemical Workstation Operation Manual (Siemens, 1989) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536810013644/im2190sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810013644/im2190Isup2.hkl
1-(4-methoxyphenyl)ethanone [8-(trifluoromethyl)quinolin-4-yl]hydrazone (1.8 g, 5 mmoles), prepared according to the previously described method (Dutkiewicz et al., 2010) was added to 5 ml of diphenyl ether and the mixture was heated at 523 K in an oil bath for 6 hrs. After cooling, ether was added until the solution became cloudy. Further cooling resulted in precipitation of the product (I), which was collected by filtration. Recrystallization was performed at room temperature from ethanol, m.p.: 401-403 K. Analysis found: C 66.56, H 3.79, N 8.23%; C19H13F3N2O, requires: C 66.66, H 3.83, N 8.18%
There is only one
of a compound having a pyrrolo[3,2-c]quinoline skeleton in the Cambridge Crystallographic Database (Allen, 2002; Version 5.31 of November 2009, last update Feb. 2010): 1-phenyl-2,3,4-tris(trifluoromethyl)pyrrolo[2,3-c]quinoline (Fan & Chen, 1987). The only other similar structurally characterized compounds are derivatives of 1H-pyrrolo[2,3-h]quinoline, namely 2-(4-pyridyl)-pyrrolo[3,2-h]quinoline (Lynch et al., 2001) and 2-phenylpyrrolo[2,3-h]quinoline dihydrate (Lynch & McClenaghan, 2002). Here we present the results of the determination of 2-(4-methoxyphenyl)-6-(trifluoromethyl)-1H-pyrrolo[3,2-c]quinoline hydrate(1 . H2O, Scheme 1).Two planar systems in (1), pyrroloquinoline (planar within 0.0171 (4) Å) and the phenyl ring (0.0050 (11) Å) make a dihedral angle of 10.94 (4)°. Therefore, the complete molecule (without F atoms) is approximately planar. The methoxy group also is not twisted significantly (5.4 (1)°) with respect to the phenyl ring plane. Bond angles within the phenyl ring are influenced by the presence of substituents. As expected for p-disubstitution, the influences are almost additive. The sum of values given by Domenicano (1988) or found in the CSD for mono-substituted phenyl rings are very close to the actual values in (1).
The primary motif of the crystal packing is a chain of alternate water and 1 molecules (Fig. 2, Table 1). In that chain (C22(8) using graph set notation: Bernstein et al., 1995) both components act as hydrogen bond donor and acceptor. N11—H11 group of 1 donates hydrogen for the N—H···O1W (water) hydrogen bond, and the water molecule acts as a donor for the O—H···N1(quinoline) hydrogen bond. Due to the steric requirement, the O1W oxygen atom is also in close contact with the adjacent H6 and H19 hydrogen atoms. Because of the geometric parameters of these interactions (Table 1), they might be regarded as the secondary, weak hydrogen bonds. The remaining hydrogen atom of the water molecule does not take part in "classical" hydrogen bonds; instead this O—H bond points toward the phenyl ring of the neighbouring molecule, probably making the O—H(water)···π weak hydrogen bond. Such hydrogen bonds were described by Atwood et al. (1991), and they are supposed to play a role in the biological systems. There are some 300 cases of such short contacts in the CSD. In 1, O—H···π hydrogen bonds together with another weak interactions of C—H···O, C—H···π and π···π type, connect the neighbouring chains (Table 1, Fig. 3).
For a description of the Cambridge Structural Database, see: Allen (2002). For O—H···π bonds, see: Atwood et al. (1991). For the graph-set description of hydrogen-bond systems, see: Bernstein et al. (1995). For the influence of the substituents on the geometry of aromatic rings, see: Domenicano (1988). For a similar synthesis, see: Dutkiewicz et al. (2010). For related structures, see: Fan & Chen (1987); Lynch et al. (2001); Lynch & McClenaghan (2002).
Data collection: CrysAlis PRO (Oxford Diffraction, 2009)); cell
CrysAlis PRO (Oxford Diffraction, 2009)); data reduction: CrysAlis PRO (Oxford Diffraction, 2009)); program(s) used to solve structure: SIR92 (Altomare et al., 1993); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Stereochemical Workstation Operation Manual (Siemens, 1989) and Mercury (Macrae et al., 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).Fig. 1. Anisotropic ellipsoid representation of the compound 1 . H2O showing the atom labelling scheme. Ellipsoids are drawn at 50% probability level, hydrogen atoms are depicted as spheres with arbitrary radii. Hydrogen bonds and weaker C—H···O contacts (cf. Comment Section) are shown as dashed lines. | |
Fig. 2. Hydrogen bonded chain along [001]; N—H···O, O—H···N, and C—H···O hydrogen bonds are shown as dashed lines. | |
Fig. 3. The crystal packing; hydrogen bonds and O—H···π and C—H···π contacts are shown as dashed lines. |
C19H13F3N2O·H2O | F(000) = 744 |
Mr = 360.33 | Dx = 1.418 Mg m−3 |
Monoclinic, P21/c | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: -P 2ybc | Cell parameters from 3587 reflections |
a = 13.838 (1) Å | θ = 3.3–75.2° |
b = 7.0432 (5) Å | µ = 0.99 mm−1 |
c = 17.758 (2) Å | T = 295 K |
β = 102.743 (8)° | Plate, colourless |
V = 1688.2 (2) Å3 | 0.4 × 0.2 × 0.1 mm |
Z = 4 |
Oxford Diffraction SuperNova (single source at offset) Atlas diffractometer | 3304 independent reflections |
Radiation source: SuperNova (Cu) X-ray Source | 2767 reflections with I > 2σ(I) |
Mirror monochromator | Rint = 0.013 |
Detector resolution: 5.2679 pixels mm-1 | θmax = 75.3°, θmin = 3.3° |
ω scans | h = −17→15 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | k = −8→5 |
Tmin = 0.340, Tmax = 1.000 | l = −22→19 |
5601 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.041 | All H-atom parameters refined |
wR(F2) = 0.128 | w = 1/[σ2(Fo2) + (0.0763P)2 + 0.1838P] where P = (Fo2 + 2Fc2)/3 |
S = 1.07 | (Δ/σ)max = 0.009 |
3304 reflections | Δρmax = 0.19 e Å−3 |
296 parameters | Δρmin = −0.21 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0039 (10) |
C19H13F3N2O·H2O | V = 1688.2 (2) Å3 |
Mr = 360.33 | Z = 4 |
Monoclinic, P21/c | Cu Kα radiation |
a = 13.838 (1) Å | µ = 0.99 mm−1 |
b = 7.0432 (5) Å | T = 295 K |
c = 17.758 (2) Å | 0.4 × 0.2 × 0.1 mm |
β = 102.743 (8)° |
Oxford Diffraction SuperNova (single source at offset) Atlas diffractometer | 3304 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 2767 reflections with I > 2σ(I) |
Tmin = 0.340, Tmax = 1.000 | Rint = 0.013 |
5601 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 0 restraints |
wR(F2) = 0.128 | All H-atom parameters refined |
S = 1.07 | Δρmax = 0.19 e Å−3 |
3304 reflections | Δρmin = −0.21 e Å−3 |
296 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N1 | 0.78945 (9) | 0.29250 (19) | 0.16925 (7) | 0.0550 (3) | |
C2 | 0.88353 (11) | 0.3157 (3) | 0.20243 (8) | 0.0585 (4) | |
H2 | 0.9306 (14) | 0.344 (3) | 0.1687 (10) | 0.071 (5)* | |
C3 | 0.92113 (10) | 0.3055 (2) | 0.28263 (8) | 0.0510 (3) | |
C4 | 0.85387 (10) | 0.26693 (18) | 0.32912 (7) | 0.0439 (3) | |
C5 | 0.75150 (10) | 0.24194 (18) | 0.29686 (8) | 0.0457 (3) | |
C6 | 0.67970 (11) | 0.2042 (2) | 0.34033 (9) | 0.0564 (4) | |
H6 | 0.6994 (13) | 0.196 (3) | 0.3971 (11) | 0.069 (5)* | |
C7 | 0.58263 (12) | 0.1830 (3) | 0.30423 (10) | 0.0684 (5) | |
H7 | 0.5303 (15) | 0.158 (3) | 0.3354 (11) | 0.080 (6)* | |
C8 | 0.55295 (12) | 0.1992 (3) | 0.22380 (10) | 0.0668 (4) | |
H8 | 0.4799 (16) | 0.183 (3) | 0.1986 (11) | 0.080 (6)* | |
C9 | 0.62098 (11) | 0.2358 (2) | 0.18026 (9) | 0.0564 (4) | |
C91 | 0.58623 (13) | 0.2559 (3) | 0.09412 (11) | 0.0790 (6) | |
F91A | 0.48893 (9) | 0.2321 (3) | 0.07127 (7) | 0.1234 (6) | |
F91B | 0.62834 (10) | 0.1319 (2) | 0.05506 (7) | 0.1118 (5) | |
F91C | 0.60642 (9) | 0.4282 (2) | 0.06897 (7) | 0.1051 (5) | |
C10 | 0.72299 (10) | 0.25735 (19) | 0.21521 (8) | 0.0474 (3) | |
N11 | 0.90552 (8) | 0.26236 (16) | 0.40374 (6) | 0.0451 (3) | |
H11 | 0.8790 (14) | 0.233 (2) | 0.4455 (11) | 0.065 (5)* | |
C12 | 1.00454 (10) | 0.2982 (2) | 0.40618 (8) | 0.0472 (3) | |
C13 | 1.01616 (10) | 0.3251 (2) | 0.33251 (8) | 0.0560 (4) | |
H13 | 1.0773 (14) | 0.354 (3) | 0.3175 (10) | 0.073 (5)* | |
C14 | 1.07851 (10) | 0.30124 (19) | 0.47970 (8) | 0.0469 (3) | |
C15 | 1.17510 (10) | 0.3653 (2) | 0.48185 (9) | 0.0557 (4) | |
H15 | 1.1925 (12) | 0.408 (3) | 0.4342 (10) | 0.067 (5)* | |
C16 | 1.24628 (11) | 0.3636 (2) | 0.54972 (9) | 0.0590 (4) | |
H16 | 1.3115 (14) | 0.409 (3) | 0.5519 (10) | 0.072 (5)* | |
C17 | 1.22347 (10) | 0.3006 (2) | 0.61766 (8) | 0.0528 (3) | |
C18 | 1.12861 (11) | 0.2388 (2) | 0.61730 (9) | 0.0547 (4) | |
H18 | 1.1117 (13) | 0.195 (2) | 0.6656 (11) | 0.064 (5)* | |
C19 | 1.05731 (10) | 0.2390 (2) | 0.54829 (8) | 0.0525 (3) | |
H19 | 0.9913 (14) | 0.193 (2) | 0.5499 (10) | 0.064 (5)* | |
O20 | 1.29904 (8) | 0.30707 (18) | 0.68177 (6) | 0.0660 (3) | |
C21 | 1.27720 (15) | 0.2604 (3) | 0.75398 (10) | 0.0669 (5) | |
H21A | 1.3371 (18) | 0.280 (3) | 0.7903 (13) | 0.090 (7)* | |
H21B | 1.2269 (17) | 0.345 (3) | 0.7653 (12) | 0.089 (6)* | |
H21C | 1.2575 (14) | 0.133 (3) | 0.7546 (11) | 0.078 (6)* | |
O1W | 0.81044 (9) | 0.12279 (19) | 0.51922 (6) | 0.0610 (3) | |
H1W1 | 0.7916 (17) | 0.165 (3) | 0.5623 (13) | 0.092 (7)* | |
H1W2 | 0.802 (2) | 0.008 (4) | 0.5170 (15) | 0.121 (10)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0483 (6) | 0.0776 (8) | 0.0393 (6) | 0.0045 (6) | 0.0100 (5) | −0.0023 (5) |
C2 | 0.0472 (7) | 0.0893 (11) | 0.0408 (7) | 0.0035 (7) | 0.0132 (6) | 0.0002 (7) |
C3 | 0.0445 (7) | 0.0674 (8) | 0.0416 (7) | 0.0037 (6) | 0.0105 (5) | −0.0016 (6) |
C4 | 0.0430 (7) | 0.0504 (7) | 0.0378 (6) | 0.0029 (5) | 0.0077 (5) | −0.0014 (5) |
C5 | 0.0448 (7) | 0.0500 (7) | 0.0414 (7) | 0.0012 (5) | 0.0076 (5) | −0.0008 (5) |
C6 | 0.0491 (8) | 0.0735 (9) | 0.0463 (7) | −0.0054 (7) | 0.0100 (6) | 0.0035 (7) |
C7 | 0.0489 (8) | 0.0975 (12) | 0.0597 (9) | −0.0095 (8) | 0.0143 (7) | 0.0046 (9) |
C8 | 0.0443 (8) | 0.0930 (12) | 0.0600 (9) | −0.0049 (8) | 0.0046 (7) | −0.0004 (8) |
C9 | 0.0463 (8) | 0.0711 (9) | 0.0487 (8) | 0.0016 (6) | 0.0043 (6) | −0.0033 (6) |
C91 | 0.0496 (9) | 0.1272 (17) | 0.0557 (10) | −0.0007 (10) | 0.0016 (7) | −0.0078 (10) |
F91A | 0.0517 (6) | 0.2442 (19) | 0.0643 (7) | −0.0149 (8) | −0.0089 (5) | 0.0008 (8) |
F91B | 0.0891 (8) | 0.1757 (14) | 0.0664 (6) | −0.0034 (8) | 0.0080 (6) | −0.0496 (8) |
F91C | 0.0881 (8) | 0.1500 (12) | 0.0710 (7) | 0.0129 (8) | 0.0040 (6) | 0.0398 (8) |
C10 | 0.0460 (7) | 0.0539 (7) | 0.0415 (7) | 0.0029 (5) | 0.0080 (6) | −0.0027 (5) |
N11 | 0.0421 (6) | 0.0557 (6) | 0.0369 (5) | 0.0007 (4) | 0.0074 (4) | 0.0000 (4) |
C12 | 0.0403 (6) | 0.0557 (7) | 0.0446 (7) | 0.0039 (5) | 0.0068 (5) | −0.0019 (5) |
C13 | 0.0410 (7) | 0.0829 (10) | 0.0446 (7) | 0.0022 (7) | 0.0108 (6) | 0.0002 (7) |
C14 | 0.0412 (7) | 0.0537 (7) | 0.0444 (7) | 0.0042 (5) | 0.0061 (5) | −0.0023 (5) |
C15 | 0.0445 (7) | 0.0705 (9) | 0.0514 (8) | −0.0003 (6) | 0.0090 (6) | 0.0010 (7) |
C16 | 0.0412 (7) | 0.0743 (10) | 0.0596 (8) | −0.0019 (7) | 0.0069 (6) | −0.0005 (7) |
C17 | 0.0430 (7) | 0.0580 (8) | 0.0515 (7) | 0.0063 (6) | −0.0022 (6) | −0.0032 (6) |
C18 | 0.0495 (8) | 0.0667 (9) | 0.0457 (8) | 0.0007 (6) | 0.0054 (6) | 0.0027 (6) |
C19 | 0.0415 (7) | 0.0682 (9) | 0.0459 (7) | −0.0012 (6) | 0.0057 (6) | −0.0004 (6) |
O20 | 0.0488 (6) | 0.0855 (8) | 0.0553 (6) | 0.0016 (5) | −0.0065 (5) | −0.0003 (5) |
C21 | 0.0688 (11) | 0.0694 (11) | 0.0532 (9) | 0.0023 (8) | −0.0063 (8) | −0.0012 (8) |
O1W | 0.0696 (7) | 0.0718 (8) | 0.0449 (5) | −0.0025 (6) | 0.0199 (5) | 0.0002 (5) |
N1—C2 | 1.3155 (19) | N11—H11 | 0.92 (2) |
N1—C10 | 1.3800 (18) | C12—C13 | 1.3662 (19) |
C2—C3 | 1.4061 (19) | C12—C14 | 1.4707 (18) |
C2—H2 | 1.00 (2) | C13—H13 | 0.96 (2) |
C3—C4 | 1.4004 (19) | C14—C19 | 1.385 (2) |
C3—C13 | 1.4210 (19) | C14—C15 | 1.403 (2) |
C4—N11 | 1.3601 (17) | C15—C16 | 1.378 (2) |
C4—C5 | 1.4170 (19) | C15—H15 | 0.977 (18) |
C5—C6 | 1.411 (2) | C16—C17 | 1.386 (2) |
C5—C10 | 1.4202 (19) | C16—H16 | 0.950 (19) |
C6—C7 | 1.363 (2) | C17—O20 | 1.3663 (16) |
C6—H6 | 0.987 (19) | C17—C18 | 1.382 (2) |
C7—C8 | 1.401 (2) | C18—C19 | 1.394 (2) |
C7—H7 | 1.02 (2) | C18—H18 | 0.988 (19) |
C8—C9 | 1.368 (2) | C19—H19 | 0.977 (19) |
C8—H8 | 1.02 (2) | O20—C21 | 1.419 (2) |
C9—C10 | 1.419 (2) | C21—H21A | 0.94 (2) |
C9—C91 | 1.506 (2) | C21—H21B | 0.97 (2) |
C91—F91B | 1.327 (2) | C21—H21C | 0.94 (2) |
C91—F91A | 1.328 (2) | O1W—H1W1 | 0.91 (2) |
C91—F91C | 1.344 (3) | O1W—H1W2 | 0.82 (3) |
N11—C12 | 1.3845 (17) | ||
C2—N1—C10 | 118.69 (12) | C4—N11—H11 | 124.9 (11) |
N1—C2—C3 | 123.77 (13) | C12—N11—H11 | 125.7 (11) |
N1—C2—H2 | 117.9 (10) | C13—C12—N11 | 108.67 (12) |
C3—C2—H2 | 118.3 (10) | C13—C12—C14 | 129.95 (13) |
C4—C3—C2 | 117.49 (13) | N11—C12—C14 | 121.38 (12) |
C4—C3—C13 | 107.18 (12) | C12—C13—C3 | 107.17 (12) |
C2—C3—C13 | 135.34 (14) | C12—C13—H13 | 126.2 (11) |
N11—C4—C3 | 107.71 (12) | C3—C13—H13 | 126.6 (11) |
N11—C4—C5 | 130.89 (12) | C19—C14—C15 | 117.58 (13) |
C3—C4—C5 | 121.39 (12) | C19—C14—C12 | 122.34 (12) |
C6—C5—C4 | 124.31 (13) | C15—C14—C12 | 120.07 (13) |
C6—C5—C10 | 120.15 (13) | C16—C15—C14 | 120.92 (14) |
C4—C5—C10 | 115.54 (12) | C16—C15—H15 | 119.7 (10) |
C7—C6—C5 | 120.19 (14) | C14—C15—H15 | 119.4 (10) |
C7—C6—H6 | 119.7 (11) | C15—C16—C17 | 120.54 (14) |
C5—C6—H6 | 120.1 (11) | C15—C16—H16 | 121.5 (11) |
C6—C7—C8 | 120.51 (15) | C17—C16—H16 | 117.9 (11) |
C6—C7—H7 | 120.5 (11) | O20—C17—C18 | 124.48 (14) |
C8—C7—H7 | 119.0 (11) | O20—C17—C16 | 115.81 (13) |
C9—C8—C7 | 120.52 (15) | C18—C17—C16 | 119.70 (13) |
C9—C8—H8 | 120.9 (12) | C17—C18—C19 | 119.43 (14) |
C7—C8—H8 | 118.6 (12) | C17—C18—H18 | 120.1 (11) |
C8—C9—C10 | 121.00 (14) | C19—C18—H18 | 120.5 (11) |
C8—C9—C91 | 119.11 (14) | C14—C19—C18 | 121.83 (14) |
C10—C9—C91 | 119.88 (14) | C14—C19—H19 | 120.8 (10) |
F91B—C91—F91A | 106.84 (17) | C18—C19—H19 | 117.4 (10) |
F91B—C91—F91C | 105.85 (17) | C17—O20—C21 | 117.95 (13) |
F91A—C91—F91C | 106.47 (18) | O20—C21—H21A | 104.7 (14) |
F91B—C91—C9 | 112.99 (17) | O20—C21—H21B | 110.5 (13) |
F91A—C91—C9 | 111.93 (16) | H21A—C21—H21B | 109.4 (17) |
F91C—C91—C9 | 112.29 (16) | O20—C21—H21C | 110.6 (12) |
N1—C10—C5 | 123.12 (13) | H21A—C21—H21C | 110.3 (17) |
N1—C10—C9 | 119.26 (13) | H21B—C21—H21C | 111.1 (18) |
C5—C10—C9 | 117.63 (13) | H1W1—O1W—H1W2 | 107 (2) |
C4—N11—C12 | 109.27 (11) | ||
C10—N1—C2—C3 | 0.5 (3) | C8—C9—C10—N1 | 179.42 (16) |
N1—C2—C3—C4 | 0.5 (3) | C91—C9—C10—N1 | −1.4 (2) |
N1—C2—C3—C13 | −179.65 (17) | C8—C9—C10—C5 | −0.8 (2) |
C2—C3—C4—N11 | 179.62 (13) | C91—C9—C10—C5 | 178.39 (15) |
C13—C3—C4—N11 | −0.26 (16) | C3—C4—N11—C12 | 0.29 (15) |
C2—C3—C4—C5 | −1.0 (2) | C5—C4—N11—C12 | −179.04 (13) |
C13—C3—C4—C5 | 179.15 (13) | C4—N11—C12—C13 | −0.21 (16) |
N11—C4—C5—C6 | −0.2 (2) | C4—N11—C12—C14 | −179.70 (12) |
C3—C4—C5—C6 | −179.49 (14) | N11—C12—C13—C3 | 0.05 (17) |
N11—C4—C5—C10 | 179.70 (13) | C14—C12—C13—C3 | 179.47 (14) |
C3—C4—C5—C10 | 0.45 (19) | C4—C3—C13—C12 | 0.12 (17) |
C4—C5—C6—C7 | 179.73 (15) | C2—C3—C13—C12 | −179.72 (18) |
C10—C5—C6—C7 | −0.2 (2) | C13—C12—C14—C19 | −168.59 (16) |
C5—C6—C7—C8 | −0.3 (3) | N11—C12—C14—C19 | 10.8 (2) |
C6—C7—C8—C9 | 0.2 (3) | C13—C12—C14—C15 | 10.1 (2) |
C7—C8—C9—C10 | 0.3 (3) | N11—C12—C14—C15 | −170.52 (13) |
C7—C8—C9—C91 | −178.87 (18) | C19—C14—C15—C16 | 0.8 (2) |
C8—C9—C91—F91B | −121.27 (19) | C12—C14—C15—C16 | −177.96 (14) |
C10—C9—C91—F91B | 59.5 (2) | C14—C15—C16—C17 | −0.8 (2) |
C8—C9—C91—F91A | −0.6 (3) | C15—C16—C17—O20 | −179.21 (14) |
C10—C9—C91—F91A | −179.81 (17) | C15—C16—C17—C18 | 0.0 (2) |
C8—C9—C91—F91C | 119.09 (18) | O20—C17—C18—C19 | 179.80 (14) |
C10—C9—C91—F91C | −60.1 (2) | C16—C17—C18—C19 | 0.6 (2) |
C2—N1—C10—C5 | −1.0 (2) | C15—C14—C19—C18 | −0.1 (2) |
C2—N1—C10—C9 | 178.74 (15) | C12—C14—C19—C18 | 178.60 (13) |
C6—C5—C10—N1 | −179.48 (14) | C17—C18—C19—C14 | −0.6 (2) |
C4—C5—C10—N1 | 0.6 (2) | C18—C17—O20—C21 | −4.8 (2) |
C6—C5—C10—C9 | 0.7 (2) | C16—C17—O20—C21 | 174.42 (15) |
C4—C5—C10—C9 | −179.21 (12) |
CgA, CgB, CgD are the centroids of the C5–C9,C1C, N1,C2–C5,C1C and C14–C19 rings, respectively |
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6···O1W | 0.987 (19) | 2.42 (2) | 3.340 (2) | 155 (2) |
N11—H11···O1W | 0.92 (2) | 1.94 (2) | 2.845 (2) | 167 (2) |
C19—H19···O1W | 0.977 (19) | 2.49 (2) | 3.439 (2) | 164 (1) |
C8—H8···O20i | 1.02 (2) | 2.45 (2) | 3.427 (2) | 160 (2) |
O1W—H1W1···N1ii | 0.91 (2) | 1.93 (2) | 2.807 (2) | 161 (2) |
C21—H21C···CgAiii | 0.94 (2) | 2.83 (2) | 3.550 (2) | 135 (2) |
C21—H21B···CgBiv | 0.97 (2) | 2.72 (2) | 3.503 (2) | 138 (2) |
O1W—H1W2···CgDiii | 0.82 (3) | 2.62 (3) | 3.310 (2) | 143 (2) |
Symmetry codes: (i) x−1, −y+1/2, z−1/2; (ii) x, −y+1/2, z+1/2; (iii) −x+2, −y, −z+1; (iv) −x+2, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C19H13F3N2O·H2O |
Mr | 360.33 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 295 |
a, b, c (Å) | 13.838 (1), 7.0432 (5), 17.758 (2) |
β (°) | 102.743 (8) |
V (Å3) | 1688.2 (2) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.99 |
Crystal size (mm) | 0.4 × 0.2 × 0.1 |
Data collection | |
Diffractometer | Oxford Diffraction SuperNova (single source at offset) Atlas |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.340, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5601, 3304, 2767 |
Rint | 0.013 |
(sin θ/λ)max (Å−1) | 0.627 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.128, 1.07 |
No. of reflections | 3304 |
No. of parameters | 296 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.19, −0.21 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2009)), SIR92 (Altomare et al., 1993), SHELXL97 (Sheldrick, 2008), Stereochemical Workstation Operation Manual (Siemens, 1989) and Mercury (Macrae et al., 2008).
CgA, CgB, CgD are the centroids of the C5–C9,C1C, N1,C2–C5,C1C and C14–C19 rings, respectively |
D—H···A | D—H | H···A | D···A | D—H···A |
C6—H6···O1W | 0.987 (19) | 2.42 (2) | 3.340 (2) | 155 (2) |
N11—H11···O1W | 0.92 (2) | 1.94 (2) | 2.845 (2) | 167 (2) |
C19—H19···O1W | 0.977 (19) | 2.49 (2) | 3.439 (2) | 164 (1) |
C8—H8···O20i | 1.02 (2) | 2.45 (2) | 3.427 (2) | 160 (2) |
O1W—H1W1···N1ii | 0.91 (2) | 1.93 (2) | 2.807 (2) | 161 (2) |
C21—H21C···CgAiii | 0.94 (2) | 2.83 (2) | 3.550 (2) | 135 (2) |
C21—H21B···CgBiv | 0.97 (2) | 2.72 (2) | 3.503 (2) | 138 (2) |
O1W—H1W2···CgDiii | 0.82 (3) | 2.62 (3) | 3.310 (2) | 143 (2) |
Symmetry codes: (i) x−1, −y+1/2, z−1/2; (ii) x, −y+1/2, z+1/2; (iii) −x+2, −y, −z+1; (iv) −x+2, −y+1, −z+1. |
Acknowledgements
ANM thanks the University of Mysore for the research facilities.
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There is only one crystal structure of a compound having a pyrrolo[3,2-c]quinoline skeleton in the Cambridge Crystallographic Database (Allen, 2002; Version 5.31 of November 2009, last update Feb. 2010): 1-phenyl-2,3,4-tris(trifluoromethyl)pyrrolo[2,3-c]quinoline (Fan & Chen, 1987). The only other similar structurally characterized compounds are derivatives of 1H-pyrrolo[2,3-h]quinoline, namely 2-(4-pyridyl)-pyrrolo[3,2-h]quinoline (Lynch et al., 2001) and 2-phenylpyrrolo[2,3-h]quinoline dihydrate (Lynch & McClenaghan, 2002). Here we present the results of the crystal structure determination of 2-(4-methoxyphenyl)-6-(trifluoromethyl)-1H-pyrrolo[3,2-c]quinoline hydrate(1 . H2O, Scheme 1).
Two planar systems in (1), pyrroloquinoline (planar within 0.0171 (4) Å) and the phenyl ring (0.0050 (11) Å) make a dihedral angle of 10.94 (4)°. Therefore, the complete molecule (without F atoms) is approximately planar. The methoxy group also is not twisted significantly (5.4 (1)°) with respect to the phenyl ring plane. Bond angles within the phenyl ring are influenced by the presence of substituents. As expected for p-disubstitution, the influences are almost additive. The sum of values given by Domenicano (1988) or found in the CSD for mono-substituted phenyl rings are very close to the actual values in (1).
The primary motif of the crystal packing is a chain of alternate water and 1 molecules (Fig. 2, Table 1). In that chain (C22(8) using graph set notation: Bernstein et al., 1995) both components act as hydrogen bond donor and acceptor. N11—H11 group of 1 donates hydrogen for the N—H···O1W (water) hydrogen bond, and the water molecule acts as a donor for the O—H···N1(quinoline) hydrogen bond. Due to the steric requirement, the O1W oxygen atom is also in close contact with the adjacent H6 and H19 hydrogen atoms. Because of the geometric parameters of these interactions (Table 1), they might be regarded as the secondary, weak hydrogen bonds. The remaining hydrogen atom of the water molecule does not take part in "classical" hydrogen bonds; instead this O—H bond points toward the phenyl ring of the neighbouring molecule, probably making the O—H(water)···π weak hydrogen bond. Such hydrogen bonds were described by Atwood et al. (1991), and they are supposed to play a role in the biological systems. There are some 300 cases of such short contacts in the CSD. In 1, O—H···π hydrogen bonds together with another weak interactions of C—H···O, C—H···π and π···π type, connect the neighbouring chains (Table 1, Fig. 3).