organic compounds
Ethyl 1-sec-butyl-2-p-tolyl-1H-benzimidazole-5-carboxylate
aSchool of Pharmaceutical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the title compound, C21H24N2O2, the butyl group is disordered over two orientations with refined site occupancies of 0.883 (3) and 0.117 (3). The dihedral angle between the mean plane of benzimidazole ring system and the benzene ring is 39.32 (4)° and the dihedral angle between the mean plane of carboxylate group and the benzimidazole ring system is 6.87 (5)°. A weak intramolecular C—H⋯π interaction may have some influence on the conformation of the molecule. In the molecules are linked into infinite chains along the b axis by weak intermolecular C—H⋯O hydrogen bonds.
Related literature
For background information on benzimidazole derivatives, their biological activity and medical applications, see: Richter (1997); Can-Eke et al. (1998); Evans et al. (1997); Garuti et al. (2000); Sondhi et al. (2005). For the synthesis of the title compound and related structures, see: Arumugam et al. (2010a,b,c). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536810015242/lh5024sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810015242/lh5024Isup2.hkl
The title compound was synthesised using the previous procedures (Arumugam et al., 2010a,b,c) and recrystallized from EtOAc by slow evaporation technique.
All H atoms were positioned geometrically and refined using a riding model, with C–H = 0.93–0.98 Å and Uiso(H) = 1.2 or 1.5 Ueq(C). The rotating group model was applied for the methyl groups. The minor disorder component is refined isotropically.
Benzimidazoles are important
from the view point of their biological activities. Substituted benzimidazole derivatives have diverse therapeutic applications as they exhibit antiulcerative (Richter, 1997), antioxidant (Can-Eke et al., 1998), anti-HIV-1 (Evans et al., 1997), antiproliferative (Garuti et al., 2000) and antikinase (Sondhi et al., 2005) activities. In view of their importance, the determination of the title compound was carried out and the results are presented herein.The geometric parameters of the title compound (Fig. 1) are comparable to those closely related structures (Arumugam et al., 2010a,b,c). The butyl group is disordered over two positions with refined site-occupancies of 0.883 (3) and 0.117 (3). The dihedral angle between the mean plane of benzimidazole ring system (C7/N1/C8–C13/N2) and the benzene ring (C1–C6) is 39.32 (4)°. The mean plane of carboxylate group (O1/O2/C14–C16) is slightly twisted from the mean plane of benzimidazole ring system with a dihedral angle of 6.87 (5)°. In the
the molecules are linked into infinite one-dimensional chains along b axis by intermolecular C12—H12A···O1i hydrogen bonds (Fig. 2, Table 1). A weak intramolecular C20—H20C···Cg1 interaction may have some influence on the conformation of the molecule (Table 1).For background information on benzimidazole derivatives, their biological activity and medical applications, see: Richter (1997); Can-Eke et al. (1998); Evans et al. (1997); Garuti et al. (2000); Sondhi et al. (2005). For the synthesis of the title compound and related structures, see: Arumugam et al. (2010a,b,c). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C21H24N2O2 | F(000) = 720 |
Mr = 336.42 | Dx = 1.240 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9348 reflections |
a = 10.6093 (7) Å | θ = 2.5–35.7° |
b = 12.5617 (9) Å | µ = 0.08 mm−1 |
c = 13.6025 (10) Å | T = 100 K |
β = 96.412 (2)° | Block, colourless |
V = 1801.5 (2) Å3 | 0.46 × 0.29 × 0.24 mm |
Z = 4 |
Bruker APEXII DUO CCD area-detector diffractometer | 8425 independent reflections |
Radiation source: fine-focus sealed tube | 6598 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.050 |
φ and ω scans | θmax = 35.9°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −17→17 |
Tmin = 0.964, Tmax = 0.981 | k = −20→18 |
31247 measured reflections | l = −22→22 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.177 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0965P)2 + 0.2974P] where P = (Fo2 + 2Fc2)/3 |
8425 reflections | (Δ/σ)max = 0.001 |
249 parameters | Δρmax = 0.58 e Å−3 |
0 restraints | Δρmin = −0.35 e Å−3 |
C21H24N2O2 | V = 1801.5 (2) Å3 |
Mr = 336.42 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.6093 (7) Å | µ = 0.08 mm−1 |
b = 12.5617 (9) Å | T = 100 K |
c = 13.6025 (10) Å | 0.46 × 0.29 × 0.24 mm |
β = 96.412 (2)° |
Bruker APEXII DUO CCD area-detector diffractometer | 8425 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 6598 reflections with I > 2σ(I) |
Tmin = 0.964, Tmax = 0.981 | Rint = 0.050 |
31247 measured reflections |
R[F2 > 2σ(F2)] = 0.051 | 0 restraints |
wR(F2) = 0.177 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.58 e Å−3 |
8425 reflections | Δρmin = −0.35 e Å−3 |
249 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O1 | 0.49342 (7) | 0.02746 (7) | 0.17217 (6) | 0.02380 (16) | |
O2 | 0.65726 (7) | −0.02944 (6) | 0.09409 (6) | 0.02268 (16) | |
N1 | 0.97240 (7) | 0.27803 (6) | 0.12066 (6) | 0.01543 (14) | |
N2 | 0.88175 (7) | 0.41780 (6) | 0.19145 (6) | 0.01655 (14) | |
C1 | 1.08554 (9) | 0.54848 (8) | 0.10257 (7) | 0.01777 (16) | |
H1A | 1.0063 | 0.5810 | 0.0955 | 0.021* | |
C2 | 1.19164 (9) | 0.60526 (8) | 0.08166 (7) | 0.01913 (17) | |
H2A | 1.1826 | 0.6757 | 0.0611 | 0.023* | |
C3 | 1.31155 (9) | 0.55829 (8) | 0.09096 (7) | 0.01821 (16) | |
C4 | 1.32288 (9) | 0.45317 (8) | 0.12279 (8) | 0.02007 (17) | |
H4A | 1.4023 | 0.4209 | 0.1299 | 0.024* | |
C5 | 1.21734 (8) | 0.39545 (8) | 0.14411 (7) | 0.01823 (16) | |
H5A | 1.2267 | 0.3251 | 0.1651 | 0.022* | |
C6 | 1.09738 (8) | 0.44266 (7) | 0.13421 (7) | 0.01533 (15) | |
C7 | 0.98590 (8) | 0.37775 (7) | 0.15004 (7) | 0.01501 (15) | |
C8 | 0.85266 (8) | 0.24973 (7) | 0.14314 (6) | 0.01444 (14) | |
C9 | 0.78890 (8) | 0.15330 (7) | 0.12648 (7) | 0.01558 (15) | |
H9A | 0.8262 | 0.0964 | 0.0969 | 0.019* | |
C10 | 0.66749 (8) | 0.14490 (7) | 0.15547 (7) | 0.01544 (15) | |
C11 | 0.61067 (8) | 0.23144 (8) | 0.19943 (7) | 0.01795 (16) | |
H11A | 0.5293 | 0.2235 | 0.2176 | 0.022* | |
C12 | 0.67222 (9) | 0.32803 (8) | 0.21644 (7) | 0.01830 (16) | |
H12A | 0.6344 | 0.3848 | 0.2457 | 0.022* | |
C13 | 0.79460 (8) | 0.33574 (7) | 0.18720 (7) | 0.01546 (15) | |
C14 | 0.59579 (9) | 0.04345 (8) | 0.14279 (7) | 0.01746 (16) | |
C15 | 0.59689 (11) | −0.13214 (8) | 0.07980 (9) | 0.0248 (2) | |
H15A | 0.5092 | −0.1239 | 0.0519 | 0.030* | |
H15B | 0.5987 | −0.1694 | 0.1424 | 0.030* | |
C16 | 0.67033 (12) | −0.19304 (10) | 0.00983 (10) | 0.0309 (2) | |
H16A | 0.6344 | −0.2628 | −0.0007 | 0.046* | |
H16B | 0.7572 | −0.1992 | 0.0377 | 0.046* | |
H16C | 0.6662 | −0.1560 | −0.0522 | 0.046* | |
C17 | 0.88130 (11) | 0.51250 (9) | 0.25531 (10) | 0.0177 (2) | 0.883 (3) |
H17A | 0.9632 | 0.5481 | 0.2535 | 0.021* | 0.883 (3) |
C18 | 0.77857 (12) | 0.59232 (10) | 0.21723 (12) | 0.0295 (3) | 0.883 (3) |
H18A | 0.7830 | 0.6054 | 0.1482 | 0.044* | 0.883 (3) |
H18B | 0.7915 | 0.6578 | 0.2533 | 0.044* | 0.883 (3) |
H18C | 0.6967 | 0.5639 | 0.2263 | 0.044* | 0.883 (3) |
C19 | 0.87392 (12) | 0.47809 (11) | 0.36205 (9) | 0.0252 (3) | 0.883 (3) |
H19A | 0.8852 | 0.5399 | 0.4048 | 0.030* | 0.883 (3) |
H19B | 0.7904 | 0.4489 | 0.3678 | 0.030* | 0.883 (3) |
C20 | 0.97390 (13) | 0.39537 (13) | 0.39635 (9) | 0.0283 (3) | 0.883 (3) |
H20A | 0.9696 | 0.3794 | 0.4649 | 0.042* | 0.883 (3) |
H20B | 1.0565 | 0.4228 | 0.3880 | 0.042* | 0.883 (3) |
H20C | 0.9588 | 0.3317 | 0.3578 | 0.042* | 0.883 (3) |
C17B | 0.9123 (10) | 0.4910 (8) | 0.2883 (8) | 0.0205 (17)* | 0.117 (3) |
H17B | 0.9914 | 0.5291 | 0.2810 | 0.025* | 0.117 (3) |
C18B | 0.9279 (12) | 0.4407 (10) | 0.3838 (8) | 0.028 (2)* | 0.117 (3) |
H18D | 0.9359 | 0.4942 | 0.4345 | 0.042* | 0.117 (3) |
H18E | 1.0028 | 0.3973 | 0.3895 | 0.042* | 0.117 (3) |
H18F | 0.8553 | 0.3970 | 0.3912 | 0.042* | 0.117 (3) |
C19B | 0.8068 (10) | 0.5725 (9) | 0.2776 (8) | 0.028 (2)* | 0.117 (3) |
H19C | 0.8237 | 0.6249 | 0.3298 | 0.034* | 0.117 (3) |
H19D | 0.7281 | 0.5370 | 0.2878 | 0.034* | 0.117 (3) |
C20B | 0.7858 (14) | 0.6360 (12) | 0.1703 (11) | 0.041 (3)* | 0.117 (3) |
H20D | 0.7288 | 0.6946 | 0.1751 | 0.061* | 0.117 (3) |
H20E | 0.7507 | 0.5879 | 0.1196 | 0.061* | 0.117 (3) |
H20F | 0.8659 | 0.6623 | 0.1541 | 0.061* | 0.117 (3) |
C21 | 1.42509 (11) | 0.62003 (10) | 0.06554 (8) | 0.0258 (2) | |
H21A | 1.5001 | 0.5936 | 0.1038 | 0.039* | |
H21B | 1.4142 | 0.6940 | 0.0802 | 0.039* | |
H21C | 1.4334 | 0.6119 | −0.0036 | 0.039* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0180 (3) | 0.0222 (4) | 0.0325 (4) | −0.0070 (2) | 0.0084 (3) | −0.0006 (3) |
O2 | 0.0226 (3) | 0.0155 (3) | 0.0316 (4) | −0.0089 (2) | 0.0100 (3) | −0.0062 (3) |
N1 | 0.0142 (3) | 0.0130 (3) | 0.0200 (3) | −0.0026 (2) | 0.0059 (2) | −0.0017 (2) |
N2 | 0.0157 (3) | 0.0132 (3) | 0.0217 (3) | −0.0031 (2) | 0.0066 (3) | −0.0045 (2) |
C1 | 0.0181 (4) | 0.0147 (4) | 0.0207 (4) | −0.0026 (3) | 0.0031 (3) | 0.0002 (3) |
C2 | 0.0231 (4) | 0.0151 (4) | 0.0195 (4) | −0.0057 (3) | 0.0035 (3) | 0.0004 (3) |
C3 | 0.0187 (4) | 0.0190 (4) | 0.0175 (4) | −0.0073 (3) | 0.0046 (3) | −0.0017 (3) |
C4 | 0.0163 (4) | 0.0195 (4) | 0.0252 (4) | −0.0035 (3) | 0.0057 (3) | 0.0000 (3) |
C5 | 0.0160 (3) | 0.0152 (4) | 0.0242 (4) | −0.0019 (3) | 0.0056 (3) | 0.0004 (3) |
C6 | 0.0153 (3) | 0.0138 (4) | 0.0174 (3) | −0.0034 (3) | 0.0044 (3) | −0.0016 (3) |
C7 | 0.0141 (3) | 0.0135 (4) | 0.0181 (3) | −0.0025 (2) | 0.0047 (3) | −0.0014 (3) |
C8 | 0.0139 (3) | 0.0123 (3) | 0.0178 (3) | −0.0025 (2) | 0.0045 (3) | −0.0015 (3) |
C9 | 0.0155 (3) | 0.0127 (3) | 0.0192 (4) | −0.0028 (3) | 0.0048 (3) | −0.0018 (3) |
C10 | 0.0153 (3) | 0.0139 (4) | 0.0175 (3) | −0.0037 (3) | 0.0037 (3) | −0.0001 (3) |
C11 | 0.0145 (3) | 0.0184 (4) | 0.0217 (4) | −0.0024 (3) | 0.0056 (3) | −0.0012 (3) |
C12 | 0.0153 (3) | 0.0168 (4) | 0.0238 (4) | −0.0016 (3) | 0.0068 (3) | −0.0038 (3) |
C13 | 0.0142 (3) | 0.0135 (4) | 0.0193 (4) | −0.0026 (3) | 0.0047 (3) | −0.0028 (3) |
C14 | 0.0166 (3) | 0.0162 (4) | 0.0197 (4) | −0.0044 (3) | 0.0027 (3) | 0.0008 (3) |
C15 | 0.0265 (5) | 0.0175 (4) | 0.0314 (5) | −0.0108 (3) | 0.0076 (4) | −0.0043 (4) |
C16 | 0.0303 (5) | 0.0212 (5) | 0.0426 (6) | −0.0081 (4) | 0.0110 (5) | −0.0081 (4) |
C17 | 0.0177 (4) | 0.0137 (4) | 0.0224 (5) | −0.0019 (3) | 0.0046 (4) | −0.0060 (4) |
C18 | 0.0230 (5) | 0.0171 (5) | 0.0492 (9) | 0.0041 (4) | 0.0076 (5) | −0.0052 (5) |
C19 | 0.0232 (5) | 0.0321 (7) | 0.0213 (5) | −0.0070 (5) | 0.0070 (4) | −0.0101 (4) |
C20 | 0.0289 (6) | 0.0361 (7) | 0.0195 (5) | −0.0105 (5) | 0.0007 (4) | 0.0019 (4) |
C21 | 0.0246 (4) | 0.0261 (5) | 0.0280 (5) | −0.0124 (4) | 0.0090 (4) | −0.0016 (4) |
O1—C14 | 1.2151 (11) | C15—H15A | 0.9700 |
O2—C14 | 1.3412 (12) | C15—H15B | 0.9700 |
O2—C15 | 1.4438 (12) | C16—H16A | 0.9600 |
N1—C7 | 1.3178 (12) | C16—H16B | 0.9600 |
N1—C8 | 1.3858 (11) | C16—H16C | 0.9600 |
N2—C13 | 1.3817 (11) | C17—C19 | 1.5253 (18) |
N2—C7 | 1.3895 (11) | C17—C18 | 1.5281 (19) |
N2—C17 | 1.4733 (13) | C17—H17A | 0.9800 |
N2—C17B | 1.609 (10) | C18—H18A | 0.9600 |
C1—C2 | 1.3886 (13) | C18—H18B | 0.9600 |
C1—C6 | 1.3985 (13) | C18—H18C | 0.9600 |
C1—H1A | 0.9300 | C19—C20 | 1.521 (2) |
C2—C3 | 1.3952 (14) | C19—H19A | 0.9700 |
C2—H2A | 0.9300 | C19—H19B | 0.9700 |
C3—C4 | 1.3907 (14) | C20—H20A | 0.9600 |
C3—C21 | 1.5051 (13) | C20—H20B | 0.9600 |
C4—C5 | 1.3914 (13) | C20—H20C | 0.9600 |
C4—H4A | 0.9300 | C17B—C18B | 1.438 (16) |
C5—C6 | 1.3969 (13) | C17B—C19B | 1.512 (15) |
C5—H5A | 0.9300 | C17B—H17B | 0.9800 |
C6—C7 | 1.4720 (12) | C18B—H18D | 0.9600 |
C8—C9 | 1.3935 (12) | C18B—H18E | 0.9600 |
C8—C13 | 1.4101 (12) | C18B—H18F | 0.9600 |
C9—C10 | 1.3926 (12) | C19B—C20B | 1.656 (19) |
C9—H9A | 0.9300 | C19B—H19C | 0.9700 |
C10—C11 | 1.4083 (13) | C19B—H19D | 0.9700 |
C10—C14 | 1.4842 (13) | C20B—H20D | 0.9600 |
C11—C12 | 1.3851 (13) | C20B—H20E | 0.9600 |
C11—H11A | 0.9300 | C20B—H20F | 0.9600 |
C12—C13 | 1.4031 (12) | C21—H21A | 0.9600 |
C12—H12A | 0.9300 | C21—H21B | 0.9600 |
C15—C16 | 1.5047 (17) | C21—H21C | 0.9600 |
C14—O2—C15 | 116.33 (8) | O2—C15—H15B | 110.4 |
C7—N1—C8 | 104.38 (7) | C16—C15—H15B | 110.4 |
C13—N2—C7 | 105.76 (7) | H15A—C15—H15B | 108.6 |
C13—N2—C17 | 125.52 (8) | C15—C16—H16A | 109.5 |
C7—N2—C17 | 125.91 (8) | C15—C16—H16B | 109.5 |
C13—N2—C17B | 122.2 (4) | H16A—C16—H16B | 109.5 |
C7—N2—C17B | 116.2 (4) | C15—C16—H16C | 109.5 |
C2—C1—C6 | 120.28 (9) | H16A—C16—H16C | 109.5 |
C2—C1—H1A | 119.9 | H16B—C16—H16C | 109.5 |
C6—C1—H1A | 119.9 | N2—C17—C19 | 109.65 (10) |
C1—C2—C3 | 121.07 (9) | N2—C17—C18 | 112.27 (11) |
C1—C2—H2A | 119.5 | C19—C17—C18 | 113.46 (10) |
C3—C2—H2A | 119.5 | N2—C17—H17A | 107.0 |
C4—C3—C2 | 118.42 (8) | C19—C17—H17A | 107.0 |
C4—C3—C21 | 121.15 (9) | C18—C17—H17A | 107.0 |
C2—C3—C21 | 120.42 (10) | C20—C19—C17 | 112.18 (10) |
C3—C4—C5 | 121.07 (9) | C20—C19—H19A | 109.2 |
C3—C4—H4A | 119.5 | C17—C19—H19A | 109.2 |
C5—C4—H4A | 119.5 | C20—C19—H19B | 109.2 |
C4—C5—C6 | 120.29 (9) | C17—C19—H19B | 109.2 |
C4—C5—H5A | 119.9 | H19A—C19—H19B | 107.9 |
C6—C5—H5A | 119.9 | C18B—C17B—C19B | 113.2 (9) |
C5—C6—C1 | 118.86 (8) | C18B—C17B—N2 | 118.7 (8) |
C5—C6—C7 | 119.27 (8) | C19B—C17B—N2 | 103.2 (8) |
C1—C6—C7 | 121.71 (8) | C18B—C17B—H17B | 107.0 |
N1—C7—N2 | 113.75 (7) | C19B—C17B—H17B | 107.0 |
N1—C7—C6 | 122.96 (8) | N2—C17B—H17B | 107.0 |
N2—C7—C6 | 123.17 (8) | C17B—C18B—H18D | 109.5 |
N1—C8—C9 | 128.86 (8) | C17B—C18B—H18E | 109.5 |
N1—C8—C13 | 110.60 (7) | H18D—C18B—H18E | 109.5 |
C9—C8—C13 | 120.53 (8) | C17B—C18B—H18F | 109.5 |
C10—C9—C8 | 117.86 (8) | H18D—C18B—H18F | 109.5 |
C10—C9—H9A | 121.1 | H18E—C18B—H18F | 109.5 |
C8—C9—H9A | 121.1 | C17B—C19B—C20B | 115.8 (9) |
C9—C10—C11 | 121.00 (8) | C17B—C19B—H19C | 108.3 |
C9—C10—C14 | 120.69 (8) | C20B—C19B—H19C | 108.3 |
C11—C10—C14 | 118.29 (8) | C17B—C19B—H19D | 108.3 |
C12—C11—C10 | 122.07 (8) | C20B—C19B—H19D | 108.3 |
C12—C11—H11A | 119.0 | H19C—C19B—H19D | 107.4 |
C10—C11—H11A | 119.0 | C19B—C20B—H20D | 109.5 |
C11—C12—C13 | 116.55 (8) | C19B—C20B—H20E | 109.5 |
C11—C12—H12A | 121.7 | H20D—C20B—H20E | 109.5 |
C13—C12—H12A | 121.7 | C19B—C20B—H20F | 109.5 |
N2—C13—C12 | 132.51 (8) | H20D—C20B—H20F | 109.5 |
N2—C13—C8 | 105.51 (7) | H20E—C20B—H20F | 109.5 |
C12—C13—C8 | 121.98 (8) | C3—C21—H21A | 109.5 |
O1—C14—O2 | 123.46 (9) | C3—C21—H21B | 109.5 |
O1—C14—C10 | 124.68 (9) | H21A—C21—H21B | 109.5 |
O2—C14—C10 | 111.86 (8) | C3—C21—H21C | 109.5 |
O2—C15—C16 | 106.63 (8) | H21A—C21—H21C | 109.5 |
O2—C15—H15A | 110.4 | H21B—C21—H21C | 109.5 |
C16—C15—H15A | 110.4 | ||
C6—C1—C2—C3 | 0.45 (15) | C17B—N2—C13—C12 | 44.5 (5) |
C1—C2—C3—C4 | −0.67 (14) | C7—N2—C13—C8 | 0.23 (10) |
C1—C2—C3—C21 | 178.44 (9) | C17—N2—C13—C8 | −161.60 (10) |
C2—C3—C4—C5 | 0.58 (15) | C17B—N2—C13—C8 | −135.9 (5) |
C21—C3—C4—C5 | −178.53 (9) | C11—C12—C13—N2 | 179.26 (10) |
C3—C4—C5—C6 | −0.26 (15) | C11—C12—C13—C8 | −0.27 (14) |
C4—C5—C6—C1 | 0.02 (14) | N1—C8—C13—N2 | −0.09 (10) |
C4—C5—C6—C7 | 175.50 (9) | C9—C8—C13—N2 | −179.20 (8) |
C2—C1—C6—C5 | −0.12 (14) | N1—C8—C13—C12 | 179.55 (9) |
C2—C1—C6—C7 | −175.48 (9) | C9—C8—C13—C12 | 0.43 (14) |
C8—N1—C7—N2 | 0.25 (10) | C15—O2—C14—O1 | −1.73 (15) |
C8—N1—C7—C6 | −175.82 (8) | C15—O2—C14—C10 | 178.60 (8) |
C13—N2—C7—N1 | −0.31 (11) | C9—C10—C14—O1 | 174.76 (10) |
C17—N2—C7—N1 | 161.42 (10) | C11—C10—C14—O1 | −3.91 (15) |
C17B—N2—C7—N1 | 138.9 (4) | C9—C10—C14—O2 | −5.57 (13) |
C13—N2—C7—C6 | 175.74 (9) | C11—C10—C14—O2 | 175.76 (8) |
C17—N2—C7—C6 | −22.52 (15) | C14—O2—C15—C16 | 170.62 (10) |
C17B—N2—C7—C6 | −45.1 (5) | C13—N2—C17—C19 | 51.97 (14) |
C5—C6—C7—N1 | −38.44 (13) | C7—N2—C17—C19 | −106.28 (11) |
C1—C6—C7—N1 | 136.90 (10) | C17B—N2—C17—C19 | −36.7 (9) |
C5—C6—C7—N2 | 145.86 (9) | C13—N2—C17—C18 | −75.12 (14) |
C1—C6—C7—N2 | −38.79 (13) | C7—N2—C17—C18 | 126.63 (11) |
C7—N1—C8—C9 | 178.93 (9) | C17B—N2—C17—C18 | −163.7 (10) |
C7—N1—C8—C13 | −0.10 (10) | N2—C17—C19—C20 | 51.24 (13) |
N1—C8—C9—C10 | −179.49 (9) | C18—C17—C19—C20 | 177.66 (10) |
C13—C8—C9—C10 | −0.55 (13) | C13—N2—C17B—C18B | 43.5 (10) |
C8—C9—C10—C11 | 0.54 (14) | C7—N2—C17B—C18B | −88.4 (9) |
C8—C9—C10—C14 | −178.09 (8) | C17—N2—C17B—C18B | 149.4 (15) |
C9—C10—C11—C12 | −0.41 (15) | C13—N2—C17B—C19B | −82.6 (7) |
C14—C10—C11—C12 | 178.26 (9) | C7—N2—C17B—C19B | 145.4 (5) |
C10—C11—C12—C13 | 0.26 (14) | C17—N2—C17B—C19B | 23.2 (7) |
C7—N2—C13—C12 | −179.36 (10) | C18B—C17B—C19B—C20B | 178.5 (9) |
C17—N2—C13—C12 | 18.81 (17) | N2—C17B—C19B—C20B | −51.9 (10) |
Cg1 is centroid of the N1/C7/N2/C13/C8 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C12—H12A···O1i | 0.93 | 2.58 | 3.5007 (13) | 173 |
C20—H20C···Cg1 | 0.96 | 2.72 | 3.3432 (13) | 123 |
Symmetry code: (i) −x+1, y+1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C21H24N2O2 |
Mr | 336.42 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 10.6093 (7), 12.5617 (9), 13.6025 (10) |
β (°) | 96.412 (2) |
V (Å3) | 1801.5 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.46 × 0.29 × 0.24 |
Data collection | |
Diffractometer | Bruker APEXII DUO CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.964, 0.981 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 31247, 8425, 6598 |
Rint | 0.050 |
(sin θ/λ)max (Å−1) | 0.825 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.177, 1.08 |
No. of reflections | 8425 |
No. of parameters | 249 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.58, −0.35 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg1 is centroid of the N1/C7/N2/C13/C8 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C12—H12A···O1i | 0.93 | 2.58 | 3.5007 (13) | 173 |
C20—H20C···Cg1 | 0.96 | 2.72 | 3.3432 (13) | 123 |
Symmetry code: (i) −x+1, y+1/2, −z+1/2. |
Acknowledgements
NA, ASAR and HO are grateful to Universiti Sains Malaysia (USM) for funding the synthetic chemistry work under the USM Research University Grant (1001/PFARMASI/815026). NA thanks USM for the award of a postdoctoral fellowship. HKF and CSY thank USM for the Research University Golden Goose Grant (1001/PFIZIK/811012). CSY also thanks USM for the award of a USM fellowship.
References
Arumugam, N., Abd Hamid, S., Abdul Rahim, A. S., Hemamalini, M. & Fun, H.-K. (2010a). Acta Cryst. E66, o776–o777. Web of Science CrossRef IUCr Journals Google Scholar
Arumugam, N., Abdul Rahim, A. S., Abd Hamid, S., Hemamalini, M. & Fun, H.-K. (2010b). Acta Cryst. E66, o796–o797. Web of Science CrossRef IUCr Journals Google Scholar
Arumugam, N., Abdul Rahim, A. S., Osman, H., Hemamalini, M. & Fun, H.-K. (2010c). Acta Cryst. E66, o845. Web of Science CrossRef IUCr Journals Google Scholar
Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Can-Eke, B., Puskullu, M. O., Buyukbingol, E. & Iscan, M. (1998). Chem. Biol. Interact. 113, 65–67. Web of Science CrossRef CAS PubMed Google Scholar
Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107. CrossRef CAS Web of Science IUCr Journals Google Scholar
Evans, T. M., Gardiner, J. M., Mahmood, N. & Smis, M. (1997). Bioorg. Med. Chem. Lett. 7, 409–412. CrossRef CAS Web of Science Google Scholar
Garuti, L., Roberti, M., Malagoli, M., Rossi, T. & Castelli, M. (2000). Bioorg. Med. Chem. Lett. 10, 2193–2195. Web of Science CrossRef PubMed CAS Google Scholar
Richter, J. E. (1997). Am. J. Gastroenterol. 92, 34–34. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sondhi, S. M., Singh, N., Lahoti, A. M., Bajaj, K., Kumar, A., Lozech, O. & Meijer, L. (2005). Bioorg. Med. Chem. 13, 4291–4299. Web of Science CrossRef PubMed CAS Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Benzimidazoles are important heterocyclic compounds from the view point of their biological activities. Substituted benzimidazole derivatives have diverse therapeutic applications as they exhibit antiulcerative (Richter, 1997), antioxidant (Can-Eke et al., 1998), anti-HIV-1 (Evans et al., 1997), antiproliferative (Garuti et al., 2000) and antikinase (Sondhi et al., 2005) activities. In view of their importance, the crystal structure determination of the title compound was carried out and the results are presented herein.
The geometric parameters of the title compound (Fig. 1) are comparable to those closely related structures (Arumugam et al., 2010a,b,c). The butyl group is disordered over two positions with refined site-occupancies of 0.883 (3) and 0.117 (3). The dihedral angle between the mean plane of benzimidazole ring system (C7/N1/C8–C13/N2) and the benzene ring (C1–C6) is 39.32 (4)°. The mean plane of carboxylate group (O1/O2/C14–C16) is slightly twisted from the mean plane of benzimidazole ring system with a dihedral angle of 6.87 (5)°. In the crystal structure, the molecules are linked into infinite one-dimensional chains along b axis by intermolecular C12—H12A···O1i hydrogen bonds (Fig. 2, Table 1). A weak intramolecular C20—H20C···Cg1 interaction may have some influence on the conformation of the molecule (Table 1).