organic compounds
1-(4-Chlorophenyl)-3-(2-thienylcarbonyl)thiourea
aDepartment of Chemistry, Research Complex, Allama Iqbal Open University, Islamabad, Pakistan, and bDepartment of Applied Biology and Chemical Technology, The Hong Kong Polytechnic University, Hung Hom, Kowloon, Hong Kong SAR, People's Republic of China
*Correspondence e-mail: sohail262001@yahoo.com
The title compound, C12H9ClN2OS2, exists in the thioamide form with an intramolecular N—H⋯O hydrogen bond across the thiourea and the carbonyl group. The dihedral angle between the rings is 10.36 (11)°. In the molecules are linked into chains by weak intermolecular C—H⋯Cl hydrogen-bonding interactions.
Related literature
For general background to the biological activity of thiourea derivatives, see: Xu et al. (2004); Gu et al. (2007). For related structures, see: Saeed et al. (2008, 2009). For the cytotoxicity of anticancer drugs to normal cells in cancer therapy, see: Saeed et al. (2010).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 2006); data reduction: SAINT and CrystalStructure (Rigaku/MSC and Rigaku, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPII (Johnson, 1976) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536810013863/lx2142sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810013863/lx2142Isup2.hkl
A solution of 2-thiophenecarbonyl chloride (0.01 mol) in anhydrous acetone (80 ml) was added dropwise to a suspension of ammonium thiocyanate (0.01 mol) in anhydrous acetone (50 ml) and the reaction mixture was refluxed for 50 minutes. After cooling to room temperature, a solution of 4-chloroaniline (0.01 mol) in dry acetone (25 ml) was added and the resulting mixture refluxed for 2 h. The reaction mixture was poured into five times its volume of cold water, upon which the thiourea precipitated. The product was recrystallized from ethanol as white block crystals.
The H atoms bound C atoms were located from difference Fourier map and refined freely. All H atoms of C atoms were positioned geometrically and refined using a riding model, with C–H = 0.93 Å for aryl and thiophenyl H atoms. Uiso(H) = 1.2Ueq(C) for aryl thiophenyl H atoms.
Thiourea and its derivatives are an important class of organic compounds in which sulfur is the major ligand atom which plays an important role in coordination chemistry with transition metals. Thiourea and its derivatives have found extensive applications in the fields of medicine, agriculture and analytical chemistry. Thioureas are also known to exhibit a wide range of biological activities including anticancer (Saeed et al., 2010), antifungal (Saeed et al., 2008), antiviral, antibacterial, anti-tubercular, anti-thyroidal, herbicidal and insecticidal activities, organocatalyst (Gu et al., 2007) and as agrochemicals (Xu et al., 2004).
The 4-chlorophenyl ring is slightly twisted {15.04 (8)°} from the thiourea plane. The thioureido group is also slightly twisted {5.0 (1)°} from the thiophene ring plane of S2/C9/C10/C11/C12. The molecular packing (Fig. 2) exhibits the thioamide form with an intramolecular N–H···O hydrogen bond across the thiourea system, with a N1–H1N···O1 (Table 1). The crystal packing (Fig. 2) is stabilized by weak intermolecular C–H···Cl hydrogen bonds between the thiophene H atom and the chlorine of an adjacent molecule, with a C12–H12···Cl1i (Table 1).
For general background to the biological activity of thiourea derivatives, see: Xu et al. (2004); Gu et al. (2007). For related structures, see: Saeed et al. (2008, 2009). For the cytotoxicity of anticancer drugs to normal cells in cancer therapy, see: Saeed et al. (2010).
For related literature, see: .
Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 2006); data reduction: SAINT (Bruker, 2006) and CrystalStructure (Rigaku/MSC and Rigaku, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPII (Johnson, 1976) and DIAMOND (Brandenburg, 1998); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C12H9ClN2OS2 | F(000) = 608 |
Mr = 296.78 | Dx = 1.544 Mg m−3 |
Monoclinic, P21/n | Melting point: 412 K |
Hall symbol: -P 2yn | Mo Kα radiation, λ = 0.71073 Å |
a = 4.6552 (7) Å | Cell parameters from 8801 reflections |
b = 11.660 (2) Å | θ = 1.7–28.3° |
c = 23.630 (4) Å | µ = 0.61 mm−1 |
β = 95.626 (2)° | T = 300 K |
V = 1276.4 (4) Å3 | Prism, yellow |
Z = 4 | 0.42 × 0.19 × 0.08 mm |
Bruker SMART 1000 CCD diffractometer | 3102 independent reflections |
Radiation source: fine-focus sealed tube | 2578 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.019 |
ω scan | θmax = 28.3°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −6→6 |
Tmin = 0.783, Tmax = 0.953 | k = −9→15 |
8549 measured reflections | l = −30→31 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.107 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0546P)2 + 0.3548P] where P = (Fo2 + 2Fc2)/3 |
3102 reflections | (Δ/σ)max < 0.001 |
172 parameters | Δρmax = 0.31 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
C12H9ClN2OS2 | V = 1276.4 (4) Å3 |
Mr = 296.78 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 4.6552 (7) Å | µ = 0.61 mm−1 |
b = 11.660 (2) Å | T = 300 K |
c = 23.630 (4) Å | 0.42 × 0.19 × 0.08 mm |
β = 95.626 (2)° |
Bruker SMART 1000 CCD diffractometer | 3102 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 2578 reflections with I > 2σ(I) |
Tmin = 0.783, Tmax = 0.953 | Rint = 0.019 |
8549 measured reflections |
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.107 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.31 e Å−3 |
3102 reflections | Δρmin = −0.20 e Å−3 |
172 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 1.37357 (11) | 0.14501 (5) | 0.54454 (2) | 0.06174 (17) | |
S1 | 0.42417 (13) | 0.54355 (4) | 0.38816 (3) | 0.06558 (19) | |
S2 | −0.38487 (12) | 0.23708 (4) | 0.20193 (2) | 0.05870 (17) | |
O1 | 0.0745 (3) | 0.22204 (11) | 0.29637 (6) | 0.0549 (3) | |
N1 | 0.4375 (3) | 0.31315 (13) | 0.37757 (6) | 0.0426 (3) | |
H1N | 0.357 (5) | 0.2572 (18) | 0.3578 (9) | 0.053 (6)* | |
N2 | 0.0880 (3) | 0.41119 (13) | 0.32158 (7) | 0.0446 (3) | |
H2N | 0.001 (5) | 0.475 (2) | 0.3134 (10) | 0.063 (7)* | |
C1 | 1.1034 (4) | 0.19841 (16) | 0.49542 (8) | 0.0448 (4) | |
C2 | 0.9940 (4) | 0.12913 (16) | 0.45099 (8) | 0.0470 (4) | |
H2 | 1.0655 | 0.0554 | 0.4470 | 0.056* | |
C3 | 0.7761 (4) | 0.17123 (15) | 0.41242 (7) | 0.0446 (4) | |
H3 | 0.7010 | 0.1254 | 0.3823 | 0.053* | |
C4 | 0.6685 (4) | 0.28161 (15) | 0.41829 (7) | 0.0395 (3) | |
C5 | 0.7819 (4) | 0.34955 (16) | 0.46329 (8) | 0.0486 (4) | |
H5 | 0.7111 | 0.4233 | 0.4677 | 0.058* | |
C6 | 1.0007 (4) | 0.30746 (17) | 0.50170 (8) | 0.0506 (4) | |
H6 | 1.0777 | 0.3531 | 0.5317 | 0.061* | |
C7 | 0.3216 (4) | 0.41540 (14) | 0.36378 (7) | 0.0409 (4) | |
C8 | −0.0182 (4) | 0.32019 (15) | 0.28912 (7) | 0.0408 (4) | |
C9 | −0.2510 (4) | 0.34711 (15) | 0.24497 (7) | 0.0413 (4) | |
C10 | −0.3865 (4) | 0.44880 (17) | 0.22982 (8) | 0.0499 (4) | |
H10 | −0.3439 | 0.5183 | 0.2481 | 0.060* | |
C11 | −0.5988 (5) | 0.43535 (18) | 0.18316 (9) | 0.0574 (5) | |
H11 | −0.7109 | 0.4952 | 0.1671 | 0.069* | |
C12 | −0.6202 (5) | 0.32616 (19) | 0.16464 (9) | 0.0586 (5) | |
H12 | −0.7503 | 0.3022 | 0.1346 | 0.070* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.0533 (3) | 0.0688 (3) | 0.0585 (3) | −0.0017 (2) | −0.0177 (2) | 0.0113 (2) |
S1 | 0.0745 (4) | 0.0364 (2) | 0.0783 (4) | −0.0039 (2) | −0.0311 (3) | −0.0049 (2) |
S2 | 0.0706 (3) | 0.0434 (3) | 0.0563 (3) | 0.0030 (2) | −0.0228 (2) | −0.0074 (2) |
O1 | 0.0672 (9) | 0.0381 (6) | 0.0547 (8) | 0.0023 (6) | −0.0187 (6) | −0.0028 (6) |
N1 | 0.0463 (8) | 0.0358 (7) | 0.0429 (8) | −0.0042 (6) | −0.0088 (6) | −0.0016 (6) |
N2 | 0.0469 (8) | 0.0372 (7) | 0.0466 (8) | 0.0002 (6) | −0.0105 (6) | −0.0020 (6) |
C1 | 0.0384 (8) | 0.0518 (10) | 0.0427 (9) | −0.0060 (7) | −0.0035 (7) | 0.0076 (7) |
C2 | 0.0494 (10) | 0.0429 (9) | 0.0473 (9) | 0.0012 (8) | −0.0023 (7) | 0.0025 (7) |
C3 | 0.0491 (9) | 0.0403 (9) | 0.0423 (9) | −0.0046 (7) | −0.0060 (7) | −0.0026 (7) |
C4 | 0.0387 (8) | 0.0392 (8) | 0.0394 (8) | −0.0047 (6) | −0.0026 (6) | 0.0029 (7) |
C5 | 0.0552 (10) | 0.0416 (9) | 0.0465 (9) | −0.0005 (8) | −0.0075 (8) | −0.0035 (7) |
C6 | 0.0526 (10) | 0.0501 (10) | 0.0460 (9) | −0.0084 (8) | −0.0113 (8) | −0.0045 (8) |
C7 | 0.0418 (8) | 0.0395 (8) | 0.0401 (8) | −0.0048 (7) | −0.0030 (6) | −0.0010 (7) |
C8 | 0.0428 (8) | 0.0395 (8) | 0.0388 (8) | −0.0031 (7) | −0.0020 (6) | 0.0002 (7) |
C9 | 0.0436 (8) | 0.0394 (9) | 0.0392 (8) | −0.0041 (7) | −0.0042 (6) | 0.0001 (7) |
C10 | 0.0528 (10) | 0.0419 (10) | 0.0519 (10) | 0.0004 (8) | −0.0098 (8) | 0.0005 (8) |
C11 | 0.0578 (11) | 0.0509 (11) | 0.0595 (12) | 0.0041 (9) | −0.0146 (9) | 0.0077 (9) |
C12 | 0.0620 (12) | 0.0570 (12) | 0.0514 (10) | −0.0013 (9) | −0.0214 (9) | 0.0007 (9) |
Cl1—C1 | 1.7408 (18) | C2—H2 | 0.9300 |
S1—C7 | 1.6548 (17) | C3—C4 | 1.393 (2) |
S2—C12 | 1.693 (2) | C3—H3 | 0.9300 |
S2—C9 | 1.7158 (17) | C4—C5 | 1.388 (2) |
O1—C8 | 1.229 (2) | C5—C6 | 1.386 (3) |
N1—C7 | 1.336 (2) | C5—H5 | 0.9300 |
N1—C4 | 1.419 (2) | C6—H6 | 0.9300 |
N1—H1N | 0.87 (2) | C8—C9 | 1.463 (2) |
N2—C8 | 1.373 (2) | C9—C10 | 1.374 (2) |
N2—C7 | 1.402 (2) | C10—C11 | 1.415 (3) |
N2—H2N | 0.86 (2) | C10—H10 | 0.9300 |
C1—C6 | 1.372 (3) | C11—C12 | 1.347 (3) |
C1—C2 | 1.382 (3) | C11—H11 | 0.9300 |
C2—C3 | 1.385 (2) | C12—H12 | 0.9300 |
C12—S2—C9 | 91.64 (10) | C1—C6—C5 | 119.94 (17) |
C7—N1—C4 | 131.12 (15) | C1—C6—H6 | 120.0 |
C7—N1—H1N | 113.5 (14) | C5—C6—H6 | 120.0 |
C4—N1—H1N | 115.4 (14) | N1—C7—N2 | 114.12 (15) |
C8—N2—C7 | 129.51 (16) | N1—C7—S1 | 128.69 (13) |
C8—N2—H2N | 113.9 (16) | N2—C7—S1 | 117.15 (13) |
C7—N2—H2N | 116.5 (16) | O1—C8—N2 | 122.64 (16) |
C6—C1—C2 | 121.18 (16) | O1—C8—C9 | 121.65 (16) |
C6—C1—Cl1 | 119.75 (14) | N2—C8—C9 | 115.71 (15) |
C2—C1—Cl1 | 119.06 (15) | C10—C9—C8 | 131.32 (16) |
C1—C2—C3 | 118.96 (17) | C10—C9—S2 | 111.10 (13) |
C1—C2—H2 | 120.5 | C8—C9—S2 | 117.57 (13) |
C3—C2—H2 | 120.5 | C9—C10—C11 | 112.03 (17) |
C2—C3—C4 | 120.61 (16) | C9—C10—H10 | 124.0 |
C2—C3—H3 | 119.7 | C11—C10—H10 | 124.0 |
C4—C3—H3 | 119.7 | C12—C11—C10 | 112.44 (18) |
C5—C4—C3 | 119.35 (16) | C12—C11—H11 | 123.8 |
C5—C4—N1 | 125.26 (16) | C10—C11—H11 | 123.8 |
C3—C4—N1 | 115.33 (15) | C11—C12—S2 | 112.79 (15) |
C6—C5—C4 | 119.96 (18) | C11—C12—H12 | 123.6 |
C6—C5—H5 | 120.0 | S2—C12—H12 | 123.6 |
C4—C5—H5 | 120.0 |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1 | 0.87 (2) | 1.91 (2) | 2.651 (2) | 143 (2) |
C12—H12···Cl1i | 0.93 | 2.69 | 3.523 (2) | 149 |
Symmetry code: (i) x−5/2, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C12H9ClN2OS2 |
Mr | 296.78 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 300 |
a, b, c (Å) | 4.6552 (7), 11.660 (2), 23.630 (4) |
β (°) | 95.626 (2) |
V (Å3) | 1276.4 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.61 |
Crystal size (mm) | 0.42 × 0.19 × 0.08 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.783, 0.953 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 8549, 3102, 2578 |
Rint | 0.019 |
(sin θ/λ)max (Å−1) | 0.667 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.107, 1.07 |
No. of reflections | 3102 |
No. of parameters | 172 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.31, −0.20 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 2006) and CrystalStructure (Rigaku/MSC and Rigaku, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEPII (Johnson, 1976) and DIAMOND (Brandenburg, 1998).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1N···O1 | 0.87 (2) | 1.91 (2) | 2.651 (2) | 143 (2) |
C12—H12···Cl1i | 0.93 | 2.69 | 3.523 (2) | 149.3 |
Symmetry code: (i) x−5/2, −y+1/2, z−1/2. |
Acknowledgements
The authors are grateful to the Department of Chemistry, Research Complex, Allama Iqbal Open University, Islamabad, and The Hong Kong Polytechnic University for providing laboratory and analytical facilities.
References
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Thiourea and its derivatives are an important class of organic compounds in which sulfur is the major ligand atom which plays an important role in coordination chemistry with transition metals. Thiourea and its derivatives have found extensive applications in the fields of medicine, agriculture and analytical chemistry. Thioureas are also known to exhibit a wide range of biological activities including anticancer (Saeed et al., 2010), antifungal (Saeed et al., 2008), antiviral, antibacterial, anti-tubercular, anti-thyroidal, herbicidal and insecticidal activities, organocatalyst (Gu et al., 2007) and as agrochemicals (Xu et al., 2004).
The 4-chlorophenyl ring is slightly twisted {15.04 (8)°} from the thiourea plane. The thioureido group is also slightly twisted {5.0 (1)°} from the thiophene ring plane of S2/C9/C10/C11/C12. The molecular packing (Fig. 2) exhibits the thioamide form with an intramolecular N–H···O hydrogen bond across the thiourea system, with a N1–H1N···O1 (Table 1). The crystal packing (Fig. 2) is stabilized by weak intermolecular C–H···Cl hydrogen bonds between the thiophene H atom and the chlorine of an adjacent molecule, with a C12–H12···Cl1i (Table 1).