organic compounds
5-Butylamino-2-[2-(dimethylamino)ethyl]-1H-benz[de]isoquinoline-1,3(2H)-dione
aInstitute of Molecular Medicine, Huaqiao University, Quanzhou, Fujian 362021, People's Republic of China.
*Correspondence e-mail: xielijuan@hqu.edu.cn
The title compound, C20H25N3O2, is a new amonafide analogue, which exhibits antitumor activity. The contains two molecules with similar conformations for the substituted aliphatic chains. The two independent molecules form dmers through N—H⋯N hydrogen bonds. The is stabilized via π–π stacking interactions, the shortest centroid–centroid separation between six-membered rings being 3.673 (2) Å.
Related literature
For general background to amonafide and its antitumour activity, see: Braña et al. (1981, 2001); Braña & Ramos (2001); Ratain et al. (1991, 1993). For the synthesis of amonafide analogues, see: Xie et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2001); cell SAINT (Bruker, 2001); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536810018702/bh2282sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810018702/bh2282Isup2.hkl
A mixture of 3-bromide-1,8-naphthalic anhydride (277 mg, 1.0 mmol) and N,N-dimethylethyldiamine (92 mg, 1.0 mmol) was refluxed in EtOH (15 ml) for 2 h, to give the intermediate 5-bromo-2-[2-(dimethylamino)ethyl]-1H-benz[de]isoquinoline-1,3(2H)-dione. This intermediate (174 mg, 0.5 mmol), CuI (9 mg, 0.05 mmol), proline (11 mg, 0.1 mmol), Cs2CO3 (244 mg, 0.75 mmol) and n-butylamine (0.75 mmol) in dry DMSO (2 ml) were mixed and stirred at 383 K for 9 h under nitrogen. The crude products were purified by
on silica gel with a mixture of CH2Cl2 and MeOH as Single crystals of the title compound were obtained from a CH2Cl2—MeOH solution.C-bonded H atoms were positioned geometrically and refined as riding atoms, with C—H = 0.93 (aromatic), 0.97 (methylene) or 0.96 Å (methyl). Isotropic displacement parameters were computed as Uiso(H) = 1.2Ueq(carrier C) for methylene and aromatic H atoms, and Uiso(H) = 1.5Ueq(carrier C) for methyl groups. Amine H atoms H2 and H5 were found in a difference map and refined freely.
Amonafide (Braña et al., 1981, 2001; Braña & Ramos, 2001) was the first compound of the naphthalimide family that reached the clinical trial stage and exhibited excellent antitumour activity against advanced breast cancer. However, in the clinical studies, it was found that amonafide was easily metabolized to N-acetyl-amonafide by enzyme N-acetyltransferase, which caused a high-variable, unpredictable toxicity (Ratain et al., 1991, 1993). In order to reduce the unpredictable toxic effect of the amonafide, we synthesized a series of amonafide analogues (Xie et al., 2009) involved the title compound, which is being reported in this article.
The molecular structure of the title compound is shown in Fig. 1. The π-π stacking interactions [centroid-centroid separations: 3.673 (2) and 3.693 (2) Å] and intermolecular N—H···N hydrogen bonds, which lead to a supramolecular network of stacked molecules in 1D chains (Fig. 2). Apart from the functional groups butylamino and N,N-dimethylamino-ethylamino, the central 1,8-naphthalimide fused rings system is almost planar.
contains two independent molecules, and it is observed that the butyl chains do not present the common all-trans conformation. This uncommon feature could be attributed to formation of intermolecular N—H···N hydrogen bonds in the [N2··· N6 and N3···N5], which involve the butyl and the dimethylamino groups, and reduce the intermolecular hindrance. The is stabilized viaFor general background to amonafide and its antitumour activity, see: Braña et al. (1981, 2001); Braña & Ramos (2001); Ratain et al. (1991, 1993). For the synthesis of amonafide analogues, see: Xie et al. (2009).
Data collection: SMART (Bruker, 2001); cell
SAINT (Bruker, 2001); data reduction: SAINT (Bruker, 2001); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C20H25N3O2 | Z = 4 |
Mr = 339.43 | F(000) = 728 |
Triclinic, P1 | Dx = 1.241 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 11.5978 (12) Å | Cell parameters from 1325 reflections |
b = 12.5362 (13) Å | θ = 5.2–49.0° |
c = 14.3721 (16) Å | µ = 0.08 mm−1 |
α = 72.329 (2)° | T = 293 K |
β = 70.599 (2)° | Prismatic, yellow |
γ = 70.759 (2)° | 0.36 × 0.33 × 0.08 mm |
V = 1816.1 (3) Å3 |
Bruker SMART APEX CCD area-detector diffractometer | 7018 independent reflections |
Radiation source: fine-focus sealed tube | 3025 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.059 |
φ and ω scans | θmax = 26.0°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | h = −14→13 |
Tmin = 0.739, Tmax = 1.000 | k = −15→11 |
10049 measured reflections | l = −17→16 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.068 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.175 | w = 1/[σ2(Fo2) + (0.0653P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.86 | (Δ/σ)max < 0.001 |
7018 reflections | Δρmax = 0.34 e Å−3 |
466 parameters | Δρmin = −0.25 e Å−3 |
3 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
0 constraints | Extinction coefficient: 0.0040 (10) |
Primary atom site location: structure-invariant direct methods |
C20H25N3O2 | γ = 70.759 (2)° |
Mr = 339.43 | V = 1816.1 (3) Å3 |
Triclinic, P1 | Z = 4 |
a = 11.5978 (12) Å | Mo Kα radiation |
b = 12.5362 (13) Å | µ = 0.08 mm−1 |
c = 14.3721 (16) Å | T = 293 K |
α = 72.329 (2)° | 0.36 × 0.33 × 0.08 mm |
β = 70.599 (2)° |
Bruker SMART APEX CCD area-detector diffractometer | 7018 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2001) | 3025 reflections with I > 2σ(I) |
Tmin = 0.739, Tmax = 1.000 | Rint = 0.059 |
10049 measured reflections |
R[F2 > 2σ(F2)] = 0.068 | 3 restraints |
wR(F2) = 0.175 | H atoms treated by a mixture of independent and constrained refinement |
S = 0.86 | Δρmax = 0.34 e Å−3 |
7018 reflections | Δρmin = −0.25 e Å−3 |
466 parameters |
x | y | z | Uiso*/Ueq | ||
O1 | 0.6424 (3) | 0.8935 (2) | 0.2061 (2) | 0.0695 (9) | |
O2 | 0.4583 (2) | 0.7887 (2) | 0.54144 (19) | 0.0625 (8) | |
O3 | 0.8585 (3) | 0.6222 (3) | 0.8127 (2) | 0.0754 (9) | |
O4 | 0.6754 (3) | 0.5191 (3) | 0.6307 (2) | 0.0700 (9) | |
N1 | 0.5553 (3) | 0.8357 (3) | 0.3739 (2) | 0.0481 (8) | |
N2 | 0.6845 (3) | 0.9030 (3) | 0.7247 (3) | 0.0592 (10) | |
N3 | 0.6185 (3) | 0.6109 (3) | 0.2983 (2) | 0.0537 (9) | |
N4 | 0.7643 (3) | 0.5748 (3) | 0.7207 (2) | 0.0518 (8) | |
N5 | 0.8927 (4) | 0.6479 (3) | 0.2640 (3) | 0.0665 (11) | |
N6 | 0.5323 (3) | 0.7148 (3) | 0.8571 (2) | 0.0537 (9) | |
C1 | 0.6412 (4) | 0.8876 (3) | 0.2925 (3) | 0.0508 (10) | |
C2 | 0.5400 (4) | 0.8308 (3) | 0.4763 (3) | 0.0480 (10) | |
C3 | 0.6272 (3) | 0.8762 (3) | 0.4991 (3) | 0.0394 (9) | |
C4 | 0.7179 (3) | 0.9258 (3) | 0.4200 (3) | 0.0416 (9) | |
C5 | 0.7264 (3) | 0.9327 (3) | 0.3189 (3) | 0.0461 (10) | |
C6 | 0.8156 (4) | 0.9811 (3) | 0.2421 (3) | 0.0563 (11) | |
H6 | 0.8212 | 0.9855 | 0.1750 | 0.068* | |
C7 | 0.8974 (4) | 1.0234 (4) | 0.2660 (3) | 0.0628 (12) | |
H7 | 0.9573 | 1.0563 | 0.2144 | 0.075* | |
C8 | 0.8902 (3) | 1.0169 (3) | 0.3642 (3) | 0.0578 (11) | |
H8 | 0.9458 | 1.0452 | 0.3784 | 0.069* | |
C9 | 0.8004 (3) | 0.9683 (3) | 0.4447 (3) | 0.0453 (10) | |
C10 | 0.7902 (3) | 0.9603 (3) | 0.5474 (3) | 0.0510 (10) | |
H10 | 0.8439 | 0.9890 | 0.5635 | 0.061* | |
C11 | 0.7023 (3) | 0.9107 (3) | 0.6237 (3) | 0.0453 (10) | |
C12 | 0.6205 (3) | 0.8696 (3) | 0.5963 (3) | 0.0455 (10) | |
H12 | 0.5599 | 0.8368 | 0.6472 | 0.055* | |
C13 | 0.7608 (4) | 0.9397 (4) | 0.7643 (3) | 0.0675 (13) | |
H13A | 0.7753 | 1.0137 | 0.7232 | 0.081* | |
H13B | 0.8422 | 0.8837 | 0.7618 | 0.081* | |
C14 | 0.6929 (5) | 0.9512 (5) | 0.8749 (3) | 0.108 (2) | |
H14A | 0.6063 | 0.9957 | 0.8775 | 0.130* | |
H14B | 0.6903 | 0.8744 | 0.9163 | 0.130* | |
C15 | 0.7481 (6) | 1.0049 (6) | 0.9201 (4) | 0.123 (2) | |
H15A | 0.8336 | 0.9585 | 0.9202 | 0.148* | |
H15B | 0.7003 | 1.0024 | 0.9901 | 0.148* | |
C16 | 0.7529 (6) | 1.1257 (5) | 0.8708 (4) | 0.129 (2) | |
H16A | 0.8098 | 1.1282 | 0.8046 | 0.194* | |
H16B | 0.7821 | 1.1557 | 0.9105 | 0.194* | |
H16C | 0.6700 | 1.1718 | 0.8654 | 0.194* | |
C17 | 0.4680 (4) | 0.7897 (3) | 0.3524 (3) | 0.0567 (11) | |
H17A | 0.4649 | 0.8224 | 0.2825 | 0.068* | |
H17B | 0.3838 | 0.8145 | 0.3948 | 0.068* | |
C18 | 0.5044 (4) | 0.6589 (3) | 0.3698 (3) | 0.0572 (11) | |
H18A | 0.5162 | 0.6266 | 0.4375 | 0.069* | |
H18B | 0.4349 | 0.6345 | 0.3667 | 0.069* | |
C19 | 0.6511 (4) | 0.4846 (4) | 0.3333 (3) | 0.0811 (14) | |
H19A | 0.5835 | 0.4551 | 0.3354 | 0.122* | |
H19B | 0.6640 | 0.4649 | 0.3997 | 0.122* | |
H19C | 0.7271 | 0.4513 | 0.2877 | 0.122* | |
C20 | 0.5971 (4) | 0.6400 (4) | 0.1975 (3) | 0.0798 (14) | |
H20A | 0.5241 | 0.6167 | 0.2020 | 0.120* | |
H20B | 0.6697 | 0.6004 | 0.1532 | 0.120* | |
H20C | 0.5835 | 0.7221 | 0.1714 | 0.120* | |
C21 | 0.8560 (4) | 0.6183 (4) | 0.7304 (3) | 0.0565 (11) | |
C22 | 0.7540 (4) | 0.5639 (3) | 0.6306 (3) | 0.0529 (11) | |
C23 | 0.8405 (3) | 0.6098 (3) | 0.5360 (3) | 0.0464 (10) | |
C24 | 0.9353 (3) | 0.6535 (3) | 0.5412 (3) | 0.0468 (10) | |
C25 | 0.9461 (3) | 0.6572 (3) | 0.6348 (3) | 0.0524 (11) | |
C26 | 1.0414 (4) | 0.6991 (4) | 0.6382 (3) | 0.0631 (12) | |
H26 | 1.0481 | 0.7028 | 0.6998 | 0.076* | |
C27 | 1.1271 (4) | 0.7359 (4) | 0.5481 (4) | 0.0669 (13) | |
H27 | 1.1913 | 0.7631 | 0.5505 | 0.080* | |
C28 | 1.1178 (4) | 0.7325 (4) | 0.4568 (3) | 0.0646 (12) | |
H28 | 1.1761 | 0.7570 | 0.3981 | 0.078* | |
C29 | 1.0213 (3) | 0.6923 (3) | 0.4503 (3) | 0.0508 (10) | |
C30 | 1.0069 (4) | 0.6899 (3) | 0.3573 (3) | 0.0580 (11) | |
H30 | 1.0636 | 0.7150 | 0.2976 | 0.070* | |
C31 | 0.9108 (4) | 0.6512 (3) | 0.3526 (3) | 0.0520 (10) | |
C32 | 0.8288 (3) | 0.6093 (3) | 0.4460 (3) | 0.0513 (10) | |
H32 | 0.7651 | 0.5807 | 0.4447 | 0.062* | |
C33 | 0.9693 (4) | 0.6911 (4) | 0.1663 (3) | 0.0804 (15) | |
H33A | 1.0576 | 0.6533 | 0.1636 | 0.097* | |
H33B | 0.9576 | 0.7734 | 0.1576 | 0.097* | |
C34 | 0.9377 (6) | 0.6714 (5) | 0.0831 (4) | 0.119 (2) | |
H34A | 0.8494 | 0.7099 | 0.0861 | 0.142* | |
H34B | 0.9478 | 0.5891 | 0.0931 | 0.142* | |
C35 | 1.0166 (7) | 0.7137 (6) | −0.0212 (4) | 0.157 (3) | |
H35A | 0.9636 | 0.7421 | −0.0680 | 0.188* | |
H35B | 1.0436 | 0.7785 | −0.0196 | 0.188* | |
C36 | 1.1246 (7) | 0.6296 (7) | −0.0586 (6) | 0.207 (4) | |
H36A | 1.1944 | 0.6293 | −0.0367 | 0.310* | |
H36B | 1.1453 | 0.6476 | −0.1311 | 0.310* | |
H36C | 1.1075 | 0.5546 | −0.0334 | 0.310* | |
C37 | 0.6757 (4) | 0.5292 (3) | 0.8135 (3) | 0.0606 (12) | |
H37A | 0.7080 | 0.5170 | 0.8711 | 0.073* | |
H37B | 0.6716 | 0.4546 | 0.8096 | 0.073* | |
C38 | 0.5425 (4) | 0.6093 (4) | 0.8305 (3) | 0.0581 (11) | |
H38A | 0.5146 | 0.6291 | 0.7694 | 0.070* | |
H38B | 0.4858 | 0.5677 | 0.8840 | 0.070* | |
C39 | 0.4064 (4) | 0.7929 (4) | 0.8558 (3) | 0.0811 (15) | |
H39A | 0.3898 | 0.8027 | 0.7921 | 0.122* | |
H39B | 0.4033 | 0.8667 | 0.8648 | 0.122* | |
H39C | 0.3438 | 0.7604 | 0.9095 | 0.122* | |
C40 | 0.5512 (4) | 0.6922 (4) | 0.9577 (3) | 0.0810 (15) | |
H40A | 0.5368 | 0.7644 | 0.9754 | 0.121* | |
H40B | 0.6362 | 0.6476 | 0.9576 | 0.121* | |
H40C | 0.4930 | 0.6499 | 1.0062 | 0.121* | |
H2 | 0.649 (3) | 0.850 (3) | 0.763 (2) | 0.065 (14)* | |
H5 | 0.818 (3) | 0.645 (4) | 0.271 (3) | 0.082 (17)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.087 (2) | 0.081 (2) | 0.0454 (18) | −0.0301 (18) | −0.0225 (16) | −0.0058 (15) |
O2 | 0.0622 (18) | 0.076 (2) | 0.0559 (18) | −0.0390 (17) | −0.0017 (14) | −0.0159 (15) |
O3 | 0.075 (2) | 0.097 (3) | 0.059 (2) | −0.0247 (19) | −0.0253 (17) | −0.0121 (17) |
O4 | 0.0651 (19) | 0.080 (2) | 0.073 (2) | −0.0406 (18) | −0.0019 (15) | −0.0221 (16) |
N1 | 0.0513 (19) | 0.042 (2) | 0.054 (2) | −0.0131 (16) | −0.0176 (16) | −0.0100 (16) |
N2 | 0.070 (2) | 0.063 (3) | 0.052 (2) | −0.032 (2) | −0.0168 (19) | −0.0054 (19) |
N3 | 0.058 (2) | 0.054 (2) | 0.053 (2) | −0.0076 (18) | −0.0205 (17) | −0.0165 (17) |
N4 | 0.049 (2) | 0.050 (2) | 0.050 (2) | −0.0138 (17) | −0.0090 (16) | −0.0056 (16) |
N5 | 0.068 (3) | 0.079 (3) | 0.051 (2) | −0.025 (2) | −0.010 (2) | −0.0106 (19) |
N6 | 0.057 (2) | 0.050 (2) | 0.048 (2) | −0.0141 (18) | −0.0105 (16) | −0.0056 (16) |
C1 | 0.055 (2) | 0.042 (2) | 0.051 (3) | −0.009 (2) | −0.016 (2) | −0.005 (2) |
C2 | 0.048 (2) | 0.040 (2) | 0.054 (3) | −0.012 (2) | −0.011 (2) | −0.0103 (19) |
C3 | 0.040 (2) | 0.030 (2) | 0.045 (2) | −0.0054 (17) | −0.0114 (17) | −0.0080 (17) |
C4 | 0.040 (2) | 0.031 (2) | 0.047 (2) | −0.0052 (17) | −0.0103 (18) | −0.0046 (17) |
C5 | 0.047 (2) | 0.038 (2) | 0.048 (2) | −0.0086 (19) | −0.0135 (19) | −0.0034 (18) |
C6 | 0.057 (3) | 0.057 (3) | 0.044 (2) | −0.015 (2) | −0.009 (2) | −0.001 (2) |
C7 | 0.051 (3) | 0.063 (3) | 0.063 (3) | −0.025 (2) | −0.006 (2) | 0.004 (2) |
C8 | 0.052 (3) | 0.058 (3) | 0.061 (3) | −0.022 (2) | −0.013 (2) | −0.003 (2) |
C9 | 0.041 (2) | 0.037 (2) | 0.052 (2) | −0.0097 (18) | −0.0105 (19) | −0.0048 (18) |
C10 | 0.051 (2) | 0.045 (3) | 0.061 (3) | −0.013 (2) | −0.020 (2) | −0.010 (2) |
C11 | 0.048 (2) | 0.040 (2) | 0.047 (2) | −0.0108 (19) | −0.0140 (19) | −0.0057 (18) |
C12 | 0.043 (2) | 0.038 (2) | 0.051 (2) | −0.0127 (19) | −0.0055 (18) | −0.0070 (18) |
C13 | 0.080 (3) | 0.073 (3) | 0.061 (3) | −0.033 (3) | −0.026 (2) | −0.008 (2) |
C14 | 0.153 (5) | 0.167 (6) | 0.049 (3) | −0.115 (5) | −0.034 (3) | 0.005 (3) |
C15 | 0.160 (6) | 0.143 (6) | 0.069 (4) | −0.065 (5) | −0.007 (4) | −0.024 (4) |
C16 | 0.165 (6) | 0.123 (6) | 0.108 (5) | −0.057 (5) | −0.010 (4) | −0.044 (4) |
C17 | 0.053 (2) | 0.061 (3) | 0.065 (3) | −0.012 (2) | −0.022 (2) | −0.021 (2) |
C18 | 0.062 (3) | 0.060 (3) | 0.060 (3) | −0.024 (2) | −0.018 (2) | −0.016 (2) |
C19 | 0.086 (3) | 0.062 (3) | 0.097 (4) | −0.006 (3) | −0.037 (3) | −0.021 (3) |
C20 | 0.091 (3) | 0.094 (4) | 0.065 (3) | −0.016 (3) | −0.031 (3) | −0.029 (3) |
C21 | 0.048 (2) | 0.051 (3) | 0.066 (3) | −0.006 (2) | −0.020 (2) | −0.007 (2) |
C22 | 0.045 (2) | 0.047 (3) | 0.064 (3) | −0.012 (2) | −0.008 (2) | −0.014 (2) |
C23 | 0.041 (2) | 0.039 (2) | 0.054 (3) | −0.0058 (19) | −0.0110 (19) | −0.0098 (19) |
C24 | 0.039 (2) | 0.033 (2) | 0.061 (3) | 0.0009 (18) | −0.016 (2) | −0.0060 (19) |
C25 | 0.043 (2) | 0.039 (2) | 0.070 (3) | −0.004 (2) | −0.020 (2) | −0.005 (2) |
C26 | 0.055 (3) | 0.057 (3) | 0.079 (3) | −0.011 (2) | −0.031 (2) | −0.006 (2) |
C27 | 0.048 (3) | 0.060 (3) | 0.090 (4) | −0.018 (2) | −0.022 (3) | −0.004 (3) |
C28 | 0.048 (3) | 0.057 (3) | 0.078 (3) | −0.015 (2) | −0.015 (2) | 0.001 (2) |
C29 | 0.040 (2) | 0.038 (2) | 0.066 (3) | −0.0065 (19) | −0.013 (2) | −0.004 (2) |
C30 | 0.045 (2) | 0.049 (3) | 0.064 (3) | −0.008 (2) | −0.006 (2) | −0.003 (2) |
C31 | 0.050 (2) | 0.036 (2) | 0.060 (3) | −0.006 (2) | −0.012 (2) | −0.004 (2) |
C32 | 0.044 (2) | 0.043 (2) | 0.067 (3) | −0.012 (2) | −0.011 (2) | −0.014 (2) |
C33 | 0.080 (3) | 0.082 (4) | 0.062 (3) | −0.021 (3) | −0.005 (3) | −0.006 (3) |
C34 | 0.163 (6) | 0.124 (5) | 0.058 (3) | −0.052 (5) | −0.001 (4) | −0.018 (3) |
C35 | 0.190 (7) | 0.125 (6) | 0.086 (5) | −0.025 (6) | 0.024 (5) | −0.009 (4) |
C36 | 0.196 (9) | 0.188 (9) | 0.203 (8) | −0.089 (7) | 0.074 (7) | −0.090 (7) |
C37 | 0.063 (3) | 0.053 (3) | 0.057 (3) | −0.019 (2) | −0.010 (2) | −0.001 (2) |
C38 | 0.055 (3) | 0.063 (3) | 0.052 (3) | −0.025 (2) | −0.005 (2) | −0.005 (2) |
C39 | 0.064 (3) | 0.074 (4) | 0.080 (3) | −0.011 (3) | 0.000 (3) | −0.009 (3) |
C40 | 0.103 (4) | 0.092 (4) | 0.048 (3) | −0.034 (3) | −0.016 (3) | −0.009 (2) |
O1—C1 | 1.216 (4) | C17—C18 | 1.515 (5) |
O2—C2 | 1.222 (4) | C17—H17A | 0.9700 |
O3—C21 | 1.209 (4) | C17—H17B | 0.9700 |
O4—C22 | 1.218 (4) | C18—H18A | 0.9700 |
N1—C2 | 1.406 (4) | C18—H18B | 0.9700 |
N1—C1 | 1.406 (4) | C19—H19A | 0.9600 |
N1—C17 | 1.469 (4) | C19—H19B | 0.9600 |
N2—C11 | 1.375 (4) | C19—H19C | 0.9600 |
N2—C13 | 1.442 (5) | C20—H20A | 0.9600 |
N2—H2 | 0.86 (2) | C20—H20B | 0.9600 |
N3—C18 | 1.455 (5) | C20—H20C | 0.9600 |
N3—C20 | 1.466 (4) | C21—C25 | 1.481 (5) |
N3—C19 | 1.466 (5) | C22—C23 | 1.478 (5) |
N4—C22 | 1.391 (5) | C23—C32 | 1.347 (5) |
N4—C21 | 1.404 (5) | C23—C24 | 1.411 (5) |
N4—C37 | 1.475 (4) | C24—C25 | 1.407 (5) |
N5—C31 | 1.372 (5) | C24—C29 | 1.417 (5) |
N5—C33 | 1.443 (5) | C25—C26 | 1.391 (5) |
N5—H5 | 0.85 (2) | C26—C27 | 1.400 (5) |
N6—C38 | 1.444 (5) | C26—H26 | 0.9300 |
N6—C40 | 1.463 (4) | C27—C28 | 1.366 (5) |
N6—C39 | 1.468 (5) | C27—H27 | 0.9300 |
C1—C5 | 1.480 (5) | C28—C29 | 1.409 (5) |
C2—C3 | 1.473 (5) | C28—H28 | 0.9300 |
C3—C12 | 1.351 (4) | C29—C30 | 1.410 (5) |
C3—C4 | 1.412 (4) | C30—C31 | 1.382 (5) |
C4—C5 | 1.401 (5) | C30—H30 | 0.9300 |
C4—C9 | 1.415 (5) | C31—C32 | 1.426 (5) |
C5—C6 | 1.380 (5) | C32—H32 | 0.9300 |
C6—C7 | 1.400 (5) | C33—C34 | 1.467 (6) |
C6—H6 | 0.9300 | C33—H33A | 0.9700 |
C7—C8 | 1.365 (5) | C33—H33B | 0.9700 |
C7—H7 | 0.9300 | C34—C35 | 1.514 (7) |
C8—C9 | 1.408 (5) | C34—H34A | 0.9700 |
C8—H8 | 0.9300 | C34—H34B | 0.9700 |
C9—C10 | 1.416 (5) | C35—C36 | 1.413 (8) |
C10—C11 | 1.375 (5) | C35—H35A | 0.9700 |
C10—H10 | 0.9300 | C35—H35B | 0.9700 |
C11—C12 | 1.419 (5) | C36—H36A | 0.9600 |
C12—H12 | 0.9300 | C36—H36B | 0.9600 |
C13—C14 | 1.550 (6) | C36—H36C | 0.9600 |
C13—H13A | 0.9700 | C37—C38 | 1.527 (5) |
C13—H13B | 0.9700 | C37—H37A | 0.9700 |
C14—C15 | 1.453 (7) | C37—H37B | 0.9700 |
C14—H14A | 0.9700 | C38—H38A | 0.9700 |
C14—H14B | 0.9700 | C38—H38B | 0.9700 |
C15—C16 | 1.476 (7) | C39—H39A | 0.9600 |
C15—H15A | 0.9700 | C39—H39B | 0.9600 |
C15—H15B | 0.9700 | C39—H39C | 0.9600 |
C16—H16A | 0.9600 | C40—H40A | 0.9600 |
C16—H16B | 0.9600 | C40—H40B | 0.9600 |
C16—H16C | 0.9600 | C40—H40C | 0.9600 |
C2—N1—C1 | 124.9 (3) | N3—C19—H19C | 109.5 |
C2—N1—C17 | 116.3 (3) | H19A—C19—H19C | 109.5 |
C1—N1—C17 | 118.7 (3) | H19B—C19—H19C | 109.5 |
C11—N2—C13 | 124.1 (3) | N3—C20—H20A | 109.5 |
C11—N2—H2 | 113 (3) | N3—C20—H20B | 109.5 |
C13—N2—H2 | 118 (3) | H20A—C20—H20B | 109.5 |
C18—N3—C20 | 110.6 (3) | N3—C20—H20C | 109.5 |
C18—N3—C19 | 108.1 (3) | H20A—C20—H20C | 109.5 |
C20—N3—C19 | 109.0 (3) | H20B—C20—H20C | 109.5 |
C22—N4—C21 | 125.5 (3) | O3—C21—N4 | 120.5 (4) |
C22—N4—C37 | 115.9 (3) | O3—C21—C25 | 123.8 (4) |
C21—N4—C37 | 118.4 (3) | N4—C21—C25 | 115.7 (4) |
C31—N5—C33 | 122.4 (4) | O4—C22—N4 | 120.6 (4) |
C31—N5—H5 | 113 (3) | O4—C22—C23 | 122.0 (4) |
C33—N5—H5 | 120 (3) | N4—C22—C23 | 117.4 (4) |
C38—N6—C40 | 111.6 (3) | C32—C23—C24 | 120.6 (3) |
C38—N6—C39 | 109.5 (3) | C32—C23—C22 | 120.1 (4) |
C40—N6—C39 | 108.7 (3) | C24—C23—C22 | 119.3 (4) |
O1—C1—N1 | 120.0 (4) | C25—C24—C23 | 121.0 (3) |
O1—C1—C5 | 123.7 (4) | C25—C24—C29 | 120.2 (4) |
N1—C1—C5 | 116.3 (4) | C23—C24—C29 | 118.8 (4) |
O2—C2—N1 | 120.0 (4) | C26—C25—C24 | 120.0 (4) |
O2—C2—C3 | 123.2 (4) | C26—C25—C21 | 119.2 (4) |
N1—C2—C3 | 116.9 (3) | C24—C25—C21 | 120.8 (4) |
C12—C3—C4 | 120.1 (3) | C25—C26—C27 | 119.5 (4) |
C12—C3—C2 | 119.6 (3) | C25—C26—H26 | 120.3 |
C4—C3—C2 | 120.3 (3) | C27—C26—H26 | 120.3 |
C5—C4—C3 | 120.7 (3) | C28—C27—C26 | 121.1 (4) |
C5—C4—C9 | 120.5 (3) | C28—C27—H27 | 119.4 |
C3—C4—C9 | 118.7 (3) | C26—C27—H27 | 119.4 |
C6—C5—C4 | 120.3 (4) | C27—C28—C29 | 121.0 (4) |
C6—C5—C1 | 118.8 (4) | C27—C28—H28 | 119.5 |
C4—C5—C1 | 120.9 (3) | C29—C28—H28 | 119.5 |
C5—C6—C7 | 119.4 (4) | C28—C29—C30 | 122.7 (4) |
C5—C6—H6 | 120.3 | C28—C29—C24 | 118.2 (4) |
C7—C6—H6 | 120.3 | C30—C29—C24 | 119.1 (4) |
C8—C7—C6 | 120.7 (4) | C31—C30—C29 | 121.7 (4) |
C8—C7—H7 | 119.6 | C31—C30—H30 | 119.1 |
C6—C7—H7 | 119.6 | C29—C30—H30 | 119.1 |
C7—C8—C9 | 121.5 (4) | N5—C31—C30 | 123.8 (4) |
C7—C8—H8 | 119.2 | N5—C31—C32 | 118.8 (4) |
C9—C8—H8 | 119.2 | C30—C31—C32 | 117.4 (4) |
C8—C9—C4 | 117.5 (4) | C23—C32—C31 | 122.3 (4) |
C8—C9—C10 | 123.0 (4) | C23—C32—H32 | 118.8 |
C4—C9—C10 | 119.6 (3) | C31—C32—H32 | 118.8 |
C11—C10—C9 | 121.1 (4) | N5—C33—C34 | 112.5 (4) |
C11—C10—H10 | 119.5 | N5—C33—H33A | 109.1 |
C9—C10—H10 | 119.5 | C34—C33—H33A | 109.1 |
C10—C11—N2 | 124.3 (4) | N5—C33—H33B | 109.1 |
C10—C11—C12 | 118.0 (4) | C34—C33—H33B | 109.1 |
N2—C11—C12 | 117.7 (3) | H33A—C33—H33B | 107.8 |
C3—C12—C11 | 122.6 (3) | C33—C34—C35 | 114.7 (5) |
C3—C12—H12 | 118.7 | C33—C34—H34A | 108.6 |
C11—C12—H12 | 118.7 | C35—C34—H34A | 108.6 |
N2—C13—C14 | 109.9 (3) | C33—C34—H34B | 108.6 |
N2—C13—H13A | 109.7 | C35—C34—H34B | 108.6 |
C14—C13—H13A | 109.7 | H34A—C34—H34B | 107.6 |
N2—C13—H13B | 109.7 | C36—C35—C34 | 114.9 (6) |
C14—C13—H13B | 109.7 | C36—C35—H35A | 108.5 |
H13A—C13—H13B | 108.2 | C34—C35—H35A | 108.5 |
C15—C14—C13 | 116.4 (4) | C36—C35—H35B | 108.5 |
C15—C14—H14A | 108.2 | C34—C35—H35B | 108.5 |
C13—C14—H14A | 108.2 | H35A—C35—H35B | 107.5 |
C15—C14—H14B | 108.2 | C35—C36—H36A | 109.5 |
C13—C14—H14B | 108.2 | C35—C36—H36B | 109.5 |
H14A—C14—H14B | 107.3 | H36A—C36—H36B | 109.5 |
C14—C15—C16 | 116.1 (5) | C35—C36—H36C | 109.5 |
C14—C15—H15A | 108.3 | H36A—C36—H36C | 109.5 |
C16—C15—H15A | 108.3 | H36B—C36—H36C | 109.5 |
C14—C15—H15B | 108.3 | N4—C37—C38 | 113.2 (3) |
C16—C15—H15B | 108.3 | N4—C37—H37A | 108.9 |
H15A—C15—H15B | 107.4 | C38—C37—H37A | 108.9 |
C15—C16—H16A | 109.5 | N4—C37—H37B | 108.9 |
C15—C16—H16B | 109.5 | C38—C37—H37B | 108.9 |
H16A—C16—H16B | 109.5 | H37A—C37—H37B | 107.8 |
C15—C16—H16C | 109.5 | N6—C38—C37 | 114.1 (3) |
H16A—C16—H16C | 109.5 | N6—C38—H38A | 108.7 |
H16B—C16—H16C | 109.5 | C37—C38—H38A | 108.7 |
N1—C17—C18 | 113.6 (3) | N6—C38—H38B | 108.7 |
N1—C17—H17A | 108.9 | C37—C38—H38B | 108.7 |
C18—C17—H17A | 108.9 | H38A—C38—H38B | 107.6 |
N1—C17—H17B | 108.9 | N6—C39—H39A | 109.5 |
C18—C17—H17B | 108.9 | N6—C39—H39B | 109.5 |
H17A—C17—H17B | 107.7 | H39A—C39—H39B | 109.5 |
N3—C18—C17 | 114.7 (3) | N6—C39—H39C | 109.5 |
N3—C18—H18A | 108.6 | H39A—C39—H39C | 109.5 |
C17—C18—H18A | 108.6 | H39B—C39—H39C | 109.5 |
N3—C18—H18B | 108.6 | N6—C40—H40A | 109.5 |
C17—C18—H18B | 108.6 | N6—C40—H40B | 109.5 |
H18A—C18—H18B | 107.6 | H40A—C40—H40B | 109.5 |
N3—C19—H19A | 109.5 | N6—C40—H40C | 109.5 |
N3—C19—H19B | 109.5 | H40A—C40—H40C | 109.5 |
H19A—C19—H19B | 109.5 | H40B—C40—H40C | 109.5 |
C2—N1—C1—O1 | −175.7 (3) | C22—N4—C21—O3 | −178.5 (4) |
C17—N1—C1—O1 | −0.1 (5) | C37—N4—C21—O3 | −2.9 (6) |
C2—N1—C1—C5 | 4.2 (5) | C22—N4—C21—C25 | 1.3 (5) |
C17—N1—C1—C5 | 179.8 (3) | C37—N4—C21—C25 | 177.0 (3) |
C1—N1—C2—O2 | 176.4 (3) | C21—N4—C22—O4 | 175.8 (4) |
C17—N1—C2—O2 | 0.8 (5) | C37—N4—C22—O4 | 0.1 (5) |
C1—N1—C2—C3 | −4.5 (5) | C21—N4—C22—C23 | −4.9 (5) |
C17—N1—C2—C3 | 179.8 (3) | C37—N4—C22—C23 | 179.4 (3) |
O2—C2—C3—C12 | 1.6 (5) | O4—C22—C23—C32 | 4.1 (6) |
N1—C2—C3—C12 | −177.4 (3) | N4—C22—C23—C32 | −175.2 (3) |
O2—C2—C3—C4 | −178.8 (3) | O4—C22—C23—C24 | −175.7 (4) |
N1—C2—C3—C4 | 2.2 (5) | N4—C22—C23—C24 | 5.0 (5) |
C12—C3—C4—C5 | 179.6 (3) | C32—C23—C24—C25 | 178.3 (3) |
C2—C3—C4—C5 | 0.0 (5) | C22—C23—C24—C25 | −1.9 (5) |
C12—C3—C4—C9 | −0.2 (5) | C32—C23—C24—C29 | −2.7 (5) |
C2—C3—C4—C9 | −179.8 (3) | C22—C23—C24—C29 | 177.1 (3) |
C3—C4—C5—C6 | −179.8 (3) | C23—C24—C25—C26 | 179.1 (3) |
C9—C4—C5—C6 | 0.0 (5) | C29—C24—C25—C26 | 0.1 (5) |
C3—C4—C5—C1 | −0.3 (5) | C23—C24—C25—C21 | −1.8 (5) |
C9—C4—C5—C1 | 179.5 (3) | C29—C24—C25—C21 | 179.2 (3) |
O1—C1—C5—C6 | −2.2 (6) | O3—C21—C25—C26 | 1.1 (6) |
N1—C1—C5—C6 | 177.9 (3) | N4—C21—C25—C26 | −178.7 (3) |
O1—C1—C5—C4 | 178.3 (4) | O3—C21—C25—C24 | −178.0 (4) |
N1—C1—C5—C4 | −1.6 (5) | N4—C21—C25—C24 | 2.1 (5) |
C4—C5—C6—C7 | −0.1 (6) | C24—C25—C26—C27 | −1.0 (6) |
C1—C5—C6—C7 | −179.6 (3) | C21—C25—C26—C27 | 179.9 (4) |
C5—C6—C7—C8 | 0.3 (6) | C25—C26—C27—C28 | 0.8 (6) |
C6—C7—C8—C9 | −0.4 (6) | C26—C27—C28—C29 | 0.3 (6) |
C7—C8—C9—C4 | 0.2 (6) | C27—C28—C29—C30 | 178.5 (4) |
C7—C8—C9—C10 | −179.9 (4) | C27—C28—C29—C24 | −1.1 (6) |
C5—C4—C9—C8 | −0.1 (5) | C25—C24—C29—C28 | 0.9 (5) |
C3—C4—C9—C8 | 179.8 (3) | C23—C24—C29—C28 | −178.1 (3) |
C5—C4—C9—C10 | −179.9 (3) | C25—C24—C29—C30 | −178.8 (3) |
C3—C4—C9—C10 | −0.1 (5) | C23—C24—C29—C30 | 2.2 (5) |
C8—C9—C10—C11 | −179.1 (4) | C28—C29—C30—C31 | −179.4 (4) |
C4—C9—C10—C11 | 0.7 (5) | C24—C29—C30—C31 | 0.3 (6) |
C9—C10—C11—N2 | −178.0 (3) | C33—N5—C31—C30 | −3.5 (6) |
C9—C10—C11—C12 | −1.1 (5) | C33—N5—C31—C32 | 178.4 (4) |
C13—N2—C11—C10 | −3.9 (6) | C29—C30—C31—N5 | 179.6 (4) |
C13—N2—C11—C12 | 179.2 (4) | C29—C30—C31—C32 | −2.3 (6) |
C4—C3—C12—C11 | −0.2 (5) | C24—C23—C32—C31 | 0.6 (6) |
C2—C3—C12—C11 | 179.4 (3) | C22—C23—C32—C31 | −179.2 (3) |
C10—C11—C12—C3 | 0.8 (5) | N5—C31—C32—C23 | −179.9 (4) |
N2—C11—C12—C3 | 178.0 (3) | C30—C31—C32—C23 | 1.9 (6) |
C11—N2—C13—C14 | 164.1 (4) | C31—N5—C33—C34 | 176.3 (4) |
N2—C13—C14—C15 | −170.6 (5) | N5—C33—C34—C35 | −179.2 (5) |
C13—C14—C15—C16 | 61.5 (8) | C33—C34—C35—C36 | 93.2 (8) |
C2—N1—C17—C18 | −79.6 (4) | C22—N4—C37—C38 | −77.6 (4) |
C1—N1—C17—C18 | 104.4 (4) | C21—N4—C37—C38 | 106.3 (4) |
C20—N3—C18—C17 | −68.8 (4) | C40—N6—C38—C37 | −68.5 (4) |
C19—N3—C18—C17 | 172.0 (3) | C39—N6—C38—C37 | 171.0 (3) |
N1—C17—C18—N3 | −69.1 (4) | N4—C37—C38—N6 | −70.1 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···N6 | 0.86 (2) | 2.33 (2) | 3.176 (5) | 173 (3) |
N5—H5···N3 | 0.85 (2) | 2.37 (2) | 3.220 (5) | 172 (4) |
Experimental details
Crystal data | |
Chemical formula | C20H25N3O2 |
Mr | 339.43 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 293 |
a, b, c (Å) | 11.5978 (12), 12.5362 (13), 14.3721 (16) |
α, β, γ (°) | 72.329 (2), 70.599 (2), 70.759 (2) |
V (Å3) | 1816.1 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.36 × 0.33 × 0.08 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2001) |
Tmin, Tmax | 0.739, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10049, 7018, 3025 |
Rint | 0.059 |
(sin θ/λ)max (Å−1) | 0.617 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.068, 0.175, 0.86 |
No. of reflections | 7018 |
No. of parameters | 466 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.34, −0.25 |
Computer programs: SMART (Bruker, 2001), SAINT (Bruker, 2001), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···N6 | 0.86 (2) | 2.33 (2) | 3.176 (5) | 173 (3) |
N5—H5···N3 | 0.85 (2) | 2.37 (2) | 3.220 (5) | 172 (4) |
Footnotes
‡Other affiliation: State Key Laboratory of Oncology in South China, Guangzhou, Guangdong 510060, People's Republic of China
Acknowledgements
The author is grateful for the support of the Scientific Research Foundation of Huaqiao University (09BS406) and the State Key Laboratory of Oncology in South China.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Amonafide (Braña et al., 1981, 2001; Braña & Ramos, 2001) was the first compound of the naphthalimide family that reached the clinical trial stage and exhibited excellent antitumour activity against advanced breast cancer. However, in the clinical studies, it was found that amonafide was easily metabolized to N-acetyl-amonafide by enzyme N-acetyltransferase, which caused a high-variable, unpredictable toxicity (Ratain et al., 1991, 1993). In order to reduce the unpredictable toxic effect of the amonafide, we synthesized a series of amonafide analogues (Xie et al., 2009) involved the title compound, which is being reported in this article.
The molecular structure of the title compound is shown in Fig. 1. The asymmetric unit contains two independent molecules, and it is observed that the butyl chains do not present the common all-trans conformation. This uncommon feature could be attributed to formation of intermolecular N—H···N hydrogen bonds in the asymmetric unit [N2··· N6 and N3···N5], which involve the butyl and the dimethylamino groups, and reduce the intermolecular hindrance. The crystal structure is stabilized via π-π stacking interactions [centroid-centroid separations: 3.673 (2) and 3.693 (2) Å] and intermolecular N—H···N hydrogen bonds, which lead to a supramolecular network of stacked molecules in 1D chains (Fig. 2). Apart from the functional groups butylamino and N,N-dimethylamino-ethylamino, the central 1,8-naphthalimide fused rings system is almost planar.