organic compounds
1-(1-Nonyl-2-oxoindolin-3-ylidene)thiosemicarbazide
aLaboratoire de Chimie Organique Hétérocyclique, Pôle de Compétences Pharmacochimie, Université Mohammed V-Agdal, BP 1014 Avenue Ibn Batout, Rabat, Morocco, bLaboratoire de Chimie Organique et Etudes Physicochimiques, ENS Rabat, Morocco, cCNRST Division UATRS, Angle Allal Fassi/FAR, BP 8027 Hay Riad, 0000 Rabat, Morocco, and dDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: seikweng@um.edu.my
In the title compound, C18H26N4OS, the imine C=N bond has a Z configuration, whereas the N—N—C=S unit has an E conformation. In the crystal, molecules are connected through N—H⋯O hydrogen bonds, forming zigzag chains running along the b axis. The nonyl chain adopts an extended zigzag conformation.
Related literature
For background to N-substituted isatins and their derivatives, see: Bouhfid et al. (2008).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S160053681001651X/bt5264sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S160053681001651X/bt5264Isup2.hkl
1-Nonyl-isatin (1 g ,3 mmol) and thiosemicarbazide (0.27 g ,3 mmol) were dissolved in aqueous ethanol (50 ml); a few drops of glacial acetic acid were added. The mixture was heated for 4 hours. Yellow crystals separated from the cool solution in 80% yield.
Carbon-bound H-atoms were placed in calculated positions (C—H 0.95–0.99 Å) and were included in the
in the riding model approximation, with U(H) set to 1.2–1.5Ueq(C). The amino-H atoms were located in a difference Fourier map, and they were refined isotropically with a distance restraint of N–H 0.86±0.01 Å.N-Substituted isatins (Bouhfid et al., 2008) represent a large family of
reported to show a wide range of useful medicinal properties. These condense readily with thiosemicarbazides to form crystalline thiosemicarbazones. The title 1-nonylisatin derivative has a Z configuration around the imine C=N bond and E conformation about the C(=S)–NH2 bond (Scheme I, Fig. 1). The molecules are connected to zigzag chains though N–H···O hydrogen bonds along the b-axis of the monoclinic (Fig. 2). The nonyl chain adopts a nearly regular zigzag conformation; however, the rigid nature gives rises to voids in the crystal.For background to N-substituted isatins and their derivatives, see: Bouhfid et al. (2008).
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).C18H26N4OS | F(000) = 744 |
Mr = 346.49 | Dx = 1.212 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 6721 reflections |
a = 11.5343 (2) Å | θ = 2.6–29.8° |
b = 10.5921 (2) Å | µ = 0.18 mm−1 |
c = 15.6262 (3) Å | T = 180 K |
β = 95.922 (1)° | Prism, yellow |
V = 1898.90 (6) Å3 | 0.17 × 0.15 × 0.09 mm |
Z = 4 |
Bruker X8 APEXII diffractometer | 5510 independent reflections |
Radiation source: fine-focus sealed tube | 4006 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.041 |
φ and ω scans | θmax = 30.0°, θmin = 2.1° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −16→16 |
Tmin = 0.970, Tmax = 0.984 | k = −14→14 |
26603 measured reflections | l = −21→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.041 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.134 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0722P)2 + 0.1904P] where P = (Fo2 + 2Fc2)/3 |
5510 reflections | (Δ/σ)max = 0.001 |
229 parameters | Δρmax = 0.48 e Å−3 |
3 restraints | Δρmin = −0.51 e Å−3 |
C18H26N4OS | V = 1898.90 (6) Å3 |
Mr = 346.49 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 11.5343 (2) Å | µ = 0.18 mm−1 |
b = 10.5921 (2) Å | T = 180 K |
c = 15.6262 (3) Å | 0.17 × 0.15 × 0.09 mm |
β = 95.922 (1)° |
Bruker X8 APEXII diffractometer | 5510 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 4006 reflections with I > 2σ(I) |
Tmin = 0.970, Tmax = 0.984 | Rint = 0.041 |
26603 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | 3 restraints |
wR(F2) = 0.134 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | Δρmax = 0.48 e Å−3 |
5510 reflections | Δρmin = −0.51 e Å−3 |
229 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.76947 (4) | 0.88269 (3) | 0.65446 (2) | 0.02943 (12) | |
O1 | 0.86020 (10) | 0.77068 (9) | 0.93146 (7) | 0.0283 (2) | |
N1 | 0.73497 (14) | 1.11116 (12) | 0.71834 (9) | 0.0314 (3) | |
N2 | 0.78603 (11) | 0.95357 (11) | 0.81532 (8) | 0.0230 (3) | |
N3 | 0.79185 (10) | 1.03853 (11) | 0.88032 (7) | 0.0213 (2) | |
N4 | 0.90309 (11) | 0.86435 (11) | 1.06470 (8) | 0.0240 (3) | |
C1 | 0.76202 (13) | 0.99075 (13) | 0.73160 (9) | 0.0221 (3) | |
C2 | 0.82742 (12) | 0.99591 (12) | 0.95604 (9) | 0.0205 (3) | |
C3 | 0.84765 (12) | 1.07018 (14) | 1.03435 (9) | 0.0224 (3) | |
C4 | 0.83255 (13) | 1.19707 (14) | 1.05261 (10) | 0.0276 (3) | |
H4 | 0.8005 | 1.2539 | 1.0095 | 0.033* | |
C5 | 0.86590 (15) | 1.23851 (16) | 1.13619 (11) | 0.0350 (4) | |
H5 | 0.8562 | 1.3248 | 1.1503 | 0.042* | |
C6 | 0.91290 (15) | 1.15564 (17) | 1.19886 (11) | 0.0360 (4) | |
H6 | 0.9352 | 1.1865 | 1.2553 | 0.043* | |
C7 | 0.92842 (14) | 1.02816 (16) | 1.18136 (10) | 0.0304 (3) | |
H7 | 0.9605 | 0.9716 | 1.2247 | 0.037* | |
C8 | 0.89532 (12) | 0.98741 (14) | 1.09875 (9) | 0.0237 (3) | |
C9 | 0.86411 (12) | 0.86286 (13) | 0.97964 (9) | 0.0221 (3) | |
C10 | 0.95911 (14) | 0.75743 (14) | 1.11096 (10) | 0.0283 (3) | |
H10A | 1.0326 | 0.7868 | 1.1432 | 0.034* | |
H10B | 0.9797 | 0.6939 | 1.0686 | 0.034* | |
C11 | 0.88473 (13) | 0.69389 (14) | 1.17376 (10) | 0.0275 (3) | |
H11A | 0.8186 | 0.6493 | 1.1415 | 0.033* | |
H11B | 0.8527 | 0.7585 | 1.2106 | 0.033* | |
C12 | 0.95880 (13) | 0.60010 (14) | 1.22971 (10) | 0.0281 (3) | |
H12A | 0.9906 | 0.5368 | 1.1918 | 0.034* | |
H12B | 1.0256 | 0.6459 | 1.2601 | 0.034* | |
C13 | 0.89450 (13) | 0.53100 (14) | 1.29607 (9) | 0.0260 (3) | |
H13A | 0.8586 | 0.5936 | 1.3323 | 0.031* | |
H13B | 0.8312 | 0.4795 | 1.2661 | 0.031* | |
C14 | 0.97559 (13) | 0.44591 (14) | 1.35311 (10) | 0.0265 (3) | |
H14A | 1.0372 | 0.4986 | 1.3841 | 0.032* | |
H14B | 1.0140 | 0.3865 | 1.3161 | 0.032* | |
C15 | 0.91596 (13) | 0.36994 (14) | 1.41887 (10) | 0.0273 (3) | |
H15A | 0.8789 | 0.4290 | 1.4570 | 0.033* | |
H15B | 0.8536 | 0.3179 | 1.3883 | 0.033* | |
C16 | 0.99913 (14) | 0.28424 (14) | 1.47370 (10) | 0.0289 (3) | |
H16A | 1.0606 | 0.3368 | 1.5050 | 0.035* | |
H16B | 1.0374 | 0.2268 | 1.4353 | 0.035* | |
C17 | 0.94113 (16) | 0.20532 (16) | 1.53871 (11) | 0.0360 (4) | |
H17A | 0.8791 | 0.1531 | 1.5078 | 0.043* | |
H17B | 0.9040 | 0.2624 | 1.5780 | 0.043* | |
C18 | 1.0270 (2) | 0.11952 (18) | 1.59148 (13) | 0.0487 (5) | |
H18A | 0.9857 | 0.0709 | 1.6322 | 0.073* | |
H18B | 1.0877 | 0.1709 | 1.6232 | 0.073* | |
H18C | 1.0628 | 0.0616 | 1.5530 | 0.073* | |
H11 | 0.7307 (17) | 1.1607 (16) | 0.7620 (9) | 0.043 (5)* | |
H12 | 0.7173 (18) | 1.1345 (19) | 0.6657 (7) | 0.050 (6)* | |
H2 | 0.8141 (15) | 0.8786 (11) | 0.8267 (12) | 0.036 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0426 (2) | 0.02504 (19) | 0.02068 (19) | −0.00110 (15) | 0.00317 (16) | −0.00439 (13) |
O1 | 0.0369 (6) | 0.0213 (5) | 0.0260 (6) | −0.0001 (4) | 0.0002 (5) | −0.0006 (4) |
N1 | 0.0521 (9) | 0.0226 (6) | 0.0189 (6) | 0.0049 (6) | 0.0001 (6) | 0.0012 (5) |
N2 | 0.0315 (7) | 0.0189 (6) | 0.0177 (6) | 0.0004 (5) | −0.0013 (5) | −0.0006 (4) |
N3 | 0.0246 (6) | 0.0207 (5) | 0.0183 (6) | −0.0014 (4) | 0.0014 (5) | −0.0005 (4) |
N4 | 0.0269 (6) | 0.0258 (6) | 0.0189 (6) | 0.0009 (5) | 0.0005 (5) | 0.0040 (4) |
C1 | 0.0254 (7) | 0.0213 (6) | 0.0192 (7) | −0.0022 (5) | 0.0011 (5) | 0.0009 (5) |
C2 | 0.0221 (7) | 0.0205 (6) | 0.0190 (7) | −0.0012 (5) | 0.0023 (5) | 0.0006 (5) |
C3 | 0.0232 (7) | 0.0263 (7) | 0.0177 (6) | −0.0021 (5) | 0.0022 (5) | −0.0004 (5) |
C4 | 0.0314 (8) | 0.0264 (7) | 0.0252 (7) | −0.0015 (6) | 0.0031 (6) | −0.0029 (6) |
C5 | 0.0416 (9) | 0.0334 (8) | 0.0304 (9) | −0.0051 (7) | 0.0060 (7) | −0.0108 (6) |
C6 | 0.0385 (9) | 0.0475 (10) | 0.0217 (8) | −0.0080 (7) | 0.0020 (7) | −0.0104 (7) |
C7 | 0.0301 (8) | 0.0400 (9) | 0.0207 (7) | −0.0038 (6) | 0.0001 (6) | 0.0011 (6) |
C8 | 0.0224 (7) | 0.0283 (7) | 0.0205 (7) | −0.0033 (5) | 0.0026 (5) | 0.0005 (5) |
C9 | 0.0228 (7) | 0.0232 (6) | 0.0202 (7) | −0.0022 (5) | 0.0013 (5) | 0.0033 (5) |
C10 | 0.0287 (8) | 0.0303 (7) | 0.0256 (8) | 0.0039 (6) | 0.0019 (6) | 0.0090 (6) |
C11 | 0.0277 (8) | 0.0293 (7) | 0.0253 (7) | 0.0007 (6) | 0.0016 (6) | 0.0084 (6) |
C12 | 0.0280 (8) | 0.0306 (7) | 0.0255 (8) | 0.0026 (6) | 0.0025 (6) | 0.0086 (6) |
C13 | 0.0273 (7) | 0.0275 (7) | 0.0234 (7) | 0.0012 (6) | 0.0030 (6) | 0.0037 (5) |
C14 | 0.0273 (7) | 0.0276 (7) | 0.0248 (7) | 0.0014 (6) | 0.0040 (6) | 0.0055 (6) |
C15 | 0.0288 (8) | 0.0276 (7) | 0.0261 (7) | −0.0001 (6) | 0.0061 (6) | 0.0051 (6) |
C16 | 0.0330 (8) | 0.0279 (7) | 0.0263 (8) | 0.0014 (6) | 0.0057 (6) | 0.0061 (6) |
C17 | 0.0444 (10) | 0.0335 (8) | 0.0298 (8) | −0.0051 (7) | 0.0029 (7) | 0.0092 (7) |
C18 | 0.0659 (13) | 0.0398 (10) | 0.0372 (10) | −0.0097 (9) | −0.0100 (9) | 0.0145 (8) |
S1—C1 | 1.6710 (14) | C10—H10B | 0.9900 |
O1—C9 | 1.2309 (17) | C11—C12 | 1.525 (2) |
N1—C1 | 1.3242 (19) | C11—H11A | 0.9900 |
N1—H11 | 0.866 (9) | C11—H11B | 0.9900 |
N1—H12 | 0.862 (9) | C12—C13 | 1.523 (2) |
N2—N3 | 1.3534 (16) | C12—H12A | 0.9900 |
N2—C1 | 1.3669 (18) | C12—H12B | 0.9900 |
N2—H2 | 0.869 (9) | C13—C14 | 1.520 (2) |
N3—C2 | 1.2931 (17) | C13—H13A | 0.9900 |
N4—C9 | 1.3585 (18) | C13—H13B | 0.9900 |
N4—C8 | 1.4142 (18) | C14—C15 | 1.524 (2) |
N4—C10 | 1.4582 (18) | C14—H14A | 0.9900 |
C2—C3 | 1.4532 (19) | C14—H14B | 0.9900 |
C2—C9 | 1.5063 (19) | C15—C16 | 1.519 (2) |
C3—C4 | 1.389 (2) | C15—H15A | 0.9900 |
C3—C8 | 1.403 (2) | C15—H15B | 0.9900 |
C4—C5 | 1.394 (2) | C16—C17 | 1.523 (2) |
C4—H4 | 0.9500 | C16—H16A | 0.9900 |
C5—C6 | 1.384 (3) | C16—H16B | 0.9900 |
C5—H5 | 0.9500 | C17—C18 | 1.522 (3) |
C6—C7 | 1.393 (2) | C17—H17A | 0.9900 |
C6—H6 | 0.9500 | C17—H17B | 0.9900 |
C7—C8 | 1.377 (2) | C18—H18A | 0.9800 |
C7—H7 | 0.9500 | C18—H18B | 0.9800 |
C10—C11 | 1.525 (2) | C18—H18C | 0.9800 |
C10—H10A | 0.9900 | ||
C1—N1—H11 | 119.5 (14) | C10—C11—H11B | 109.7 |
C1—N1—H12 | 117.0 (14) | C12—C11—H11B | 109.7 |
H11—N1—H12 | 123.4 (19) | H11A—C11—H11B | 108.2 |
N3—N2—C1 | 121.07 (11) | C13—C12—C11 | 114.83 (13) |
N3—N2—H2 | 117.7 (13) | C13—C12—H12A | 108.6 |
C1—N2—H2 | 119.6 (13) | C11—C12—H12A | 108.6 |
C2—N3—N2 | 116.17 (11) | C13—C12—H12B | 108.6 |
C9—N4—C8 | 110.57 (11) | C11—C12—H12B | 108.6 |
C9—N4—C10 | 124.13 (12) | H12A—C12—H12B | 107.5 |
C8—N4—C10 | 124.85 (12) | C14—C13—C12 | 111.77 (13) |
N1—C1—N2 | 116.64 (13) | C14—C13—H13A | 109.3 |
N1—C1—S1 | 125.15 (11) | C12—C13—H13A | 109.3 |
N2—C1—S1 | 118.21 (10) | C14—C13—H13B | 109.3 |
N3—C2—C3 | 126.14 (12) | C12—C13—H13B | 109.3 |
N3—C2—C9 | 127.25 (12) | H13A—C13—H13B | 107.9 |
C3—C2—C9 | 106.48 (12) | C13—C14—C15 | 114.55 (13) |
C4—C3—C8 | 120.37 (13) | C13—C14—H14A | 108.6 |
C4—C3—C2 | 133.18 (13) | C15—C14—H14A | 108.6 |
C8—C3—C2 | 106.41 (12) | C13—C14—H14B | 108.6 |
C3—C4—C5 | 117.97 (15) | C15—C14—H14B | 108.6 |
C3—C4—H4 | 121.0 | H14A—C14—H14B | 107.6 |
C5—C4—H4 | 121.0 | C16—C15—C14 | 113.15 (13) |
C6—C5—C4 | 120.90 (15) | C16—C15—H15A | 108.9 |
C6—C5—H5 | 119.6 | C14—C15—H15A | 108.9 |
C4—C5—H5 | 119.5 | C16—C15—H15B | 108.9 |
C5—C6—C7 | 121.67 (15) | C14—C15—H15B | 108.9 |
C5—C6—H6 | 119.2 | H15A—C15—H15B | 107.8 |
C7—C6—H6 | 119.2 | C15—C16—C17 | 114.13 (13) |
C8—C7—C6 | 117.33 (15) | C15—C16—H16A | 108.7 |
C8—C7—H7 | 121.3 | C17—C16—H16A | 108.7 |
C6—C7—H7 | 121.3 | C15—C16—H16B | 108.7 |
C7—C8—C3 | 121.77 (14) | C17—C16—H16B | 108.7 |
C7—C8—N4 | 128.26 (14) | H16A—C16—H16B | 107.6 |
C3—C8—N4 | 109.97 (12) | C16—C17—C18 | 112.53 (15) |
O1—C9—N4 | 126.53 (13) | C16—C17—H17A | 109.1 |
O1—C9—C2 | 126.92 (13) | C18—C17—H17A | 109.1 |
N4—C9—C2 | 106.55 (12) | C16—C17—H17B | 109.1 |
N4—C10—C11 | 114.32 (13) | C18—C17—H17B | 109.1 |
N4—C10—H10A | 108.7 | H17A—C17—H17B | 107.8 |
C11—C10—H10A | 108.7 | C17—C18—H18A | 109.5 |
N4—C10—H10B | 108.7 | C17—C18—H18B | 109.5 |
C11—C10—H10B | 108.7 | H18A—C18—H18B | 109.5 |
H10A—C10—H10B | 107.6 | C17—C18—H18C | 109.5 |
C10—C11—C12 | 109.71 (13) | H18A—C18—H18C | 109.5 |
C10—C11—H11A | 109.7 | H18B—C18—H18C | 109.5 |
C12—C11—H11A | 109.7 | ||
C1—N2—N3—C2 | −172.75 (13) | C10—N4—C8—C7 | −5.9 (2) |
N3—N2—C1—N1 | −5.7 (2) | C9—N4—C8—C3 | 1.03 (17) |
N3—N2—C1—S1 | 173.97 (10) | C10—N4—C8—C3 | 173.50 (13) |
N2—N3—C2—C3 | 175.91 (13) | C8—N4—C9—O1 | 179.53 (14) |
N2—N3—C2—C9 | 0.7 (2) | C10—N4—C9—O1 | 7.0 (2) |
N3—C2—C3—C4 | 2.9 (3) | C8—N4—C9—C2 | −0.18 (16) |
C9—C2—C3—C4 | 178.91 (16) | C10—N4—C9—C2 | −172.71 (13) |
N3—C2—C3—C8 | −174.78 (14) | N3—C2—C9—O1 | −4.4 (2) |
C9—C2—C3—C8 | 1.27 (15) | C3—C2—C9—O1 | 179.61 (14) |
C8—C3—C4—C5 | −0.1 (2) | N3—C2—C9—N4 | 175.31 (14) |
C2—C3—C4—C5 | −177.47 (15) | C3—C2—C9—N4 | −0.69 (15) |
C3—C4—C5—C6 | 0.2 (2) | C9—N4—C10—C11 | −108.71 (16) |
C4—C5—C6—C7 | −0.2 (3) | C8—N4—C10—C11 | 79.81 (18) |
C5—C6—C7—C8 | 0.2 (2) | N4—C10—C11—C12 | −169.81 (13) |
C6—C7—C8—C3 | −0.1 (2) | C10—C11—C12—C13 | 179.42 (13) |
C6—C7—C8—N4 | 179.29 (15) | C11—C12—C13—C14 | −176.25 (13) |
C4—C3—C8—C7 | 0.1 (2) | C12—C13—C14—C15 | −177.78 (13) |
C2—C3—C8—C7 | 178.06 (14) | C13—C14—C15—C16 | 178.98 (13) |
C4—C3—C8—N4 | −179.43 (13) | C14—C15—C16—C17 | −178.83 (13) |
C2—C3—C8—N4 | −1.42 (16) | C15—C16—C17—C18 | 179.22 (15) |
C9—N4—C8—C7 | −178.41 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H11···S1i | 0.87 (1) | 2.69 (1) | 3.499 (1) | 156 (2) |
N1—H12···O1i | 0.86 (1) | 2.22 (1) | 3.002 (2) | 152 (2) |
Symmetry code: (i) −x+3/2, y+1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C18H26N4OS |
Mr | 346.49 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 180 |
a, b, c (Å) | 11.5343 (2), 10.5921 (2), 15.6262 (3) |
β (°) | 95.922 (1) |
V (Å3) | 1898.90 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.18 |
Crystal size (mm) | 0.17 × 0.15 × 0.09 |
Data collection | |
Diffractometer | Bruker X8 APEXII diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.970, 0.984 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26603, 5510, 4006 |
Rint | 0.041 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.134, 1.09 |
No. of reflections | 5510 |
No. of parameters | 229 |
No. of restraints | 3 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.48, −0.51 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H12···O1i | 0.86 (1) | 2.22 (1) | 3.002 (2) | 152 (2) |
Symmetry code: (i) −x+3/2, y+1/2, −z+3/2. |
Acknowledgements
We thank the Université Mohammed V-Agdal and the University of Malaya for supporting this study.
References
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N-Substituted isatins (Bouhfid et al., 2008) represent a large family of heterocyclic compounds reported to show a wide range of useful medicinal properties. These condense readily with thiosemicarbazides to form crystalline thiosemicarbazones. The title 1-nonylisatin derivative has a Z configuration around the imine C=N bond and E conformation about the C(=S)–NH2 bond (Scheme I, Fig. 1). The molecules are connected to zigzag chains though N–H···O hydrogen bonds along the b-axis of the monoclinic unit cell (Fig. 2). The nonyl chain adopts a nearly regular zigzag conformation; however, the rigid nature gives rises to voids in the crystal.