metal-organic compounds
[(Z)-1-Amino-2-cyano-2-(4,6-di-2-pyridylpyrimidin-2-yl)ethenolato]chlorido(N,N-dimethylformamide-κO)zinc(II)
aNew Materials & Function Coordination Chemistry Laboratory, Qingdao University of Science & Technology, Qingdao 266042, People's Republic of China
*Correspondence e-mail: ffj2003@163169.net
In the title complex, [Zn(C17H11N6O)Cl(C3H7NO)], the ZnII atom has a distorted square-pyramidal coordination formed by one Cl, two O and two N atoms. In the intermolecular N—H⋯Cl hydrogen bonds link molecules into centrosymmetric dimers, which are further assembled by π–π interactions [centroid–centroid distances = 3.809 (3) and 3.834 (3) Å] into layers parallel to the ab plane. The crystal packing exhibits also weak intermolecular C—H⋯Cl interactions.
Related literature
For general background concerning the self-assembly of metal complexes with organic ligands, see: Chi et al. (2008); Patroniak et al. (2005); Kovbasyuk et al. (2005). For related structures, see: Preston & Kennard (1969); Jian et al. (2004); Patroniak et al. (2003).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: CAD-4 Software (Enraf–Nonius, 1989); cell CAD-4 Software; data reduction: NRCVAX (Gabe et al., 1989); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
https://doi.org/10.1107/S1600536810017770/cv2708sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810017770/cv2708Isup2.hkl
The title complex was prepared by the reaction of (Z)-3-amino-2-(4,6-di(pyridin-2-yl)pyrimidin-2-yl)-3-hydroxyacrylonitrile (3.16 g, 10 mmol) with Zinc dichloride (1.36 g, 10 mmol) in water solution at 353 K for four hours. Single crystals suitable for x-ray measurements were obtained by recrystallization from DMF at room temperature.
All H atoms, except H1, were fixed geometrically and allowed to ride on their attached atoms, with C—H distances constrained to 0.93-0.96Å, N—H = 0.86 Å, and with Uiso(H) = 1.2-1.5Ueq (C, N). Atom H1 was located on a difference map and refined isotropically.
Recently, self-assembly of specially designed metal complexes have attracted intense attention due to their fascinating molecular structures and crystal-packing motifs (Chi et al., 2008). Several metal complexes with ligands containig heterocyclic pyrimidine and pyridine units have been studied previously to explore the role of hydrogen bonding in supramolecular assemblies (Patroniak et al., 2005; Kovbasyuk et al., 2005). Herein, we report the
of the title compound (I).In (I) (Fig. 1), the zinc(II) ion is coordinated by one O anion and two N atoms of (Z)-3-amino-2-(4,6-di(pyridin-2-yl)pyrimidin-2-yl)-3- hydroxyacrylonitrile ligand, one O atom from DMF (DMF = N,N-dimethylformamide) and one Cl- anion, forming a distorted square-pyramidal geometry. The Zn—Cl distance of 2.2956 (12)Å is longer than the value of 2.212 (4) Å in ZnCl2(2,9-dimethyl-1,10-phenanthroline) (Preston et al., 1969) and 2.209 (1)Å in ZnCl2(C6H4N3CH2COPh)2 (Jian et al., 2004). The Zn—O bond lengths of 1.996 (3) and 2.066 (2)Å, respectively, are shorter than those reported previously (Patroniak et al., 2003). The Zn—N bond lengths are 2.103 (3) and 2.106 (2) Å, respectively, which are in disagreement with the corresponding five-coordination Zn—N distances found in similar compounds (Patroniak et al., 2003; Chi et al., 2008 ). The N3—Zn1—N4 bite angle is 77.58 (10)°, which is narrower than that in {Zn[4,6-bis(2-pyridyl)-2-aminopyrimidine](OOCCH3)2} [78.40 (7)°, Chi et al., 2008].
The five-membered chelate ring N3/C8/C9/N4/Zn1 (P1) is fairly planar, the deviation of atom Zn1 from the weighted least-squares plane N3/C8/C9/N4 is 0.079 Å. The dihedral angles formed by P1 with the planes N3/C14/C15/C17/O1/Zn1(P2), N2/C6—C8/N3/C14(P3), N4/C9—C13(P4) and N1/C1—C5(P5) are 16.67, 9.93, 5.02 and 19.49°, respectively. The dihedral angles formed by P3 with P4 and P5 are 5.61 and 16.55°, respectively. The dihedral angle between P2 and P4 is 14.55°.
In the π-π interactions (Table 1) into layers parallel to ab plane. The crystal packing exhibits also weak intermolecular C—H···Cl interactions (Table 2).
intermolecular N—H···Cl hydrogen bonds (Table 2) link molecules into centrosymmetric dimers, which are further assembled byFor general background concerning the self-assembly of metal complexes with organic ligands, see: Chi et al. (2008); Patroniak et al. (2005); Kovbasyuk et al. (2005). For related structures, see: Preston et al. (1969); Jian et al. (2004); Patroniak et al. (2003).
Data collection: CAD-4 Software (Enraf–Nonius, 1989); cell
CAD-4 Software(Enraf–Nonius, 1989); data reduction: NRCVAX (Gabe et al., 1989); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. The structure of the title compound showing 50% probability displacement ellipsoids and the atom-numbering scheme. |
[Zn(C17H11N6O)Cl(C3H7NO)] | Z = 2 |
Mr = 489.23 | F(000) = 500 |
Triclinic, P1 | Dx = 1.509 Mg m−3 |
Hall symbol: -p 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.5610 (17) Å | Cell parameters from 25 reflections |
b = 11.250 (2) Å | θ = 4–14° |
c = 12.259 (3) Å | µ = 1.30 mm−1 |
α = 110.70 (3)° | T = 295 K |
β = 91.36 (3)° | Block, red |
γ = 101.37 (3)° | 0.20 × 0.17 × 0.15 mm |
V = 1077.1 (4) Å3 |
Enraf–Nonius CAD-4 diffractometer | Rint = 0.026 |
Radiation source: fine-focus sealed tube | θmax = 27.5°, θmin = 3.0° |
Graphite monochromator | h = −10→11 |
ω scans | k = −14→14 |
10564 measured reflections | l = −15→15 |
4863 independent reflections | 3 standard reflections every 100 reflections |
4214 reflections with I > 2σ(I) | intensity decay: none |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.167 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | w = 1/[σ2(Fo2) + (0.1038P)2 + 0.732P] where P = (Fo2 + 2Fc2)/3 |
4863 reflections | (Δ/σ)max = 0.001 |
284 parameters | Δρmax = 1.58 e Å−3 |
0 restraints | Δρmin = −0.58 e Å−3 |
[Zn(C17H11N6O)Cl(C3H7NO)] | γ = 101.37 (3)° |
Mr = 489.23 | V = 1077.1 (4) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.5610 (17) Å | Mo Kα radiation |
b = 11.250 (2) Å | µ = 1.30 mm−1 |
c = 12.259 (3) Å | T = 295 K |
α = 110.70 (3)° | 0.20 × 0.17 × 0.15 mm |
β = 91.36 (3)° |
Enraf–Nonius CAD-4 diffractometer | Rint = 0.026 |
10564 measured reflections | 3 standard reflections every 100 reflections |
4863 independent reflections | intensity decay: none |
4214 reflections with I > 2σ(I) |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.167 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | Δρmax = 1.58 e Å−3 |
4863 reflections | Δρmin = −0.58 e Å−3 |
284 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Zn1 | 0.33598 (4) | 0.22665 (3) | 0.92885 (3) | 0.03870 (16) | |
Cl1 | 0.17317 (10) | 0.36222 (8) | 1.02298 (8) | 0.0497 (2) | |
O1 | 0.5618 (3) | 0.3196 (3) | 0.9911 (2) | 0.0511 (6) | |
O2 | 0.3716 (3) | 0.2649 (3) | 0.7773 (2) | 0.0542 (6) | |
N1 | 0.3389 (4) | −0.0424 (3) | 1.3640 (3) | 0.0566 (8) | |
N2 | 0.4266 (4) | 0.0756 (3) | 1.2026 (3) | 0.0496 (7) | |
N3 | 0.3565 (3) | 0.1094 (2) | 1.0273 (2) | 0.0328 (5) | |
N4 | 0.1814 (3) | 0.0487 (3) | 0.8275 (2) | 0.0401 (6) | |
N5 | 0.7321 (5) | 0.3459 (4) | 1.3637 (3) | 0.0727 (10) | |
N6 | 0.7680 (4) | 0.4302 (3) | 1.1244 (3) | 0.0591 (8) | |
H6A | 0.8020 | 0.4736 | 1.0811 | 0.071* | |
H6B | 0.8209 | 0.4462 | 1.1904 | 0.071* | |
N7 | 0.4824 (4) | 0.3814 (3) | 0.6721 (3) | 0.0499 (7) | |
C1 | 0.3016 (6) | −0.0996 (5) | 1.4418 (4) | 0.0646 (11) | |
H1B | 0.3465 | −0.0551 | 1.5189 | 0.078* | |
C2 | 0.2027 (5) | −0.2183 (5) | 1.4156 (4) | 0.0628 (10) | |
H2B | 0.1794 | −0.2530 | 1.4733 | 0.075* | |
C3 | 0.1376 (6) | −0.2861 (5) | 1.3011 (4) | 0.0655 (11) | |
H3A | 0.0698 | −0.3679 | 1.2799 | 0.079* | |
C4 | 0.1749 (5) | −0.2300 (4) | 1.2179 (4) | 0.0562 (9) | |
H4A | 0.1348 | −0.2746 | 1.1397 | 0.067* | |
C5 | 0.2727 (4) | −0.1070 (3) | 1.2534 (3) | 0.0417 (7) | |
C6 | 0.3068 (4) | −0.0356 (3) | 1.1717 (3) | 0.0375 (6) | |
C7 | 0.2136 (4) | −0.0771 (3) | 1.0636 (3) | 0.0377 (6) | |
H7A | 0.1342 | −0.1533 | 1.0386 | 0.045* | |
C8 | 0.2430 (3) | −0.0020 (3) | 0.9955 (2) | 0.0344 (6) | |
C9 | 0.1483 (3) | −0.0380 (3) | 0.8802 (2) | 0.0358 (6) | |
C10 | 0.0349 (4) | −0.1544 (3) | 0.8286 (3) | 0.0460 (7) | |
H10A | 0.0137 | −0.2141 | 0.8658 | 0.055* | |
C11 | −0.0458 (5) | −0.1798 (4) | 0.7204 (3) | 0.0538 (9) | |
H11A | −0.1233 | −0.2562 | 0.6850 | 0.065* | |
C12 | −0.0105 (4) | −0.0919 (4) | 0.6666 (3) | 0.0526 (8) | |
H12A | −0.0620 | −0.1085 | 0.5934 | 0.063* | |
C13 | 0.1019 (4) | 0.0213 (4) | 0.7218 (3) | 0.0483 (8) | |
H13A | 0.1242 | 0.0815 | 0.6852 | 0.058* | |
C14 | 0.4514 (3) | 0.1485 (3) | 1.1287 (2) | 0.0354 (6) | |
C15 | 0.5791 (4) | 0.2644 (3) | 1.1610 (3) | 0.0385 (6) | |
C16 | 0.6641 (4) | 0.3068 (3) | 1.2730 (3) | 0.0448 (7) | |
C17 | 0.6313 (4) | 0.3365 (3) | 1.0886 (3) | 0.0392 (6) | |
C18 | 0.4729 (4) | 0.3546 (4) | 0.7681 (3) | 0.0460 (7) | |
C19 | 0.3704 (7) | 0.3062 (5) | 0.5696 (4) | 0.0831 (15) | |
H19A | 0.2953 | 0.2405 | 0.5858 | 0.125* | |
H19B | 0.4275 | 0.2655 | 0.5053 | 0.125* | |
H19C | 0.3140 | 0.3627 | 0.5496 | 0.125* | |
C20 | 0.6072 (6) | 0.4868 (4) | 0.6641 (4) | 0.0608 (10) | |
H20A | 0.6742 | 0.5285 | 0.7370 | 0.091* | |
H20B | 0.5583 | 0.5493 | 0.6478 | 0.091* | |
H20C | 0.6709 | 0.4516 | 0.6022 | 0.091* | |
H1 | 0.546 (5) | 0.406 (4) | 0.831 (4) | 0.056 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Zn1 | 0.0394 (2) | 0.0427 (2) | 0.0365 (2) | 0.00096 (15) | 0.00087 (14) | 0.02205 (16) |
Cl1 | 0.0495 (5) | 0.0453 (4) | 0.0573 (5) | 0.0067 (3) | 0.0090 (4) | 0.0242 (4) |
O1 | 0.0415 (12) | 0.0654 (16) | 0.0501 (13) | −0.0046 (11) | −0.0003 (10) | 0.0344 (12) |
O2 | 0.0582 (15) | 0.0631 (16) | 0.0436 (13) | −0.0035 (12) | 0.0051 (11) | 0.0313 (12) |
N1 | 0.068 (2) | 0.0629 (19) | 0.0421 (15) | 0.0026 (15) | −0.0026 (14) | 0.0297 (14) |
N2 | 0.0516 (16) | 0.0552 (17) | 0.0468 (15) | 0.0107 (13) | 0.0047 (12) | 0.0251 (13) |
N3 | 0.0365 (12) | 0.0333 (11) | 0.0290 (11) | 0.0053 (9) | 0.0033 (9) | 0.0130 (9) |
N4 | 0.0424 (13) | 0.0445 (14) | 0.0350 (13) | 0.0048 (11) | 0.0015 (10) | 0.0191 (11) |
N5 | 0.074 (2) | 0.079 (3) | 0.055 (2) | −0.0010 (19) | −0.0158 (17) | 0.0238 (18) |
N6 | 0.0483 (17) | 0.0606 (19) | 0.067 (2) | −0.0140 (14) | −0.0101 (14) | 0.0364 (16) |
N7 | 0.0607 (18) | 0.0525 (16) | 0.0411 (14) | 0.0061 (13) | 0.0101 (13) | 0.0257 (12) |
C1 | 0.079 (3) | 0.077 (3) | 0.046 (2) | 0.009 (2) | 0.0025 (18) | 0.0359 (19) |
C2 | 0.068 (2) | 0.080 (3) | 0.063 (2) | 0.018 (2) | 0.0154 (19) | 0.052 (2) |
C3 | 0.070 (3) | 0.063 (2) | 0.073 (3) | −0.003 (2) | 0.000 (2) | 0.046 (2) |
C4 | 0.063 (2) | 0.056 (2) | 0.055 (2) | −0.0007 (17) | −0.0042 (17) | 0.0341 (17) |
C5 | 0.0447 (16) | 0.0456 (17) | 0.0432 (16) | 0.0119 (13) | 0.0056 (12) | 0.0253 (13) |
C6 | 0.0407 (15) | 0.0404 (15) | 0.0376 (15) | 0.0112 (12) | 0.0084 (12) | 0.0202 (12) |
C7 | 0.0402 (15) | 0.0362 (14) | 0.0373 (14) | 0.0037 (11) | 0.0035 (11) | 0.0169 (12) |
C8 | 0.0369 (14) | 0.0351 (14) | 0.0325 (13) | 0.0080 (11) | 0.0044 (11) | 0.0137 (11) |
C9 | 0.0342 (14) | 0.0401 (15) | 0.0333 (14) | 0.0081 (11) | 0.0044 (11) | 0.0138 (11) |
C10 | 0.0490 (18) | 0.0418 (16) | 0.0439 (17) | 0.0021 (13) | −0.0014 (13) | 0.0164 (13) |
C11 | 0.0513 (19) | 0.0502 (19) | 0.0464 (18) | −0.0023 (15) | −0.0069 (15) | 0.0092 (15) |
C12 | 0.0515 (19) | 0.062 (2) | 0.0381 (17) | 0.0084 (16) | −0.0079 (14) | 0.0143 (15) |
C13 | 0.0515 (19) | 0.057 (2) | 0.0364 (16) | 0.0049 (15) | −0.0040 (13) | 0.0217 (14) |
C14 | 0.0358 (14) | 0.0375 (14) | 0.0354 (14) | 0.0085 (11) | 0.0046 (11) | 0.0161 (11) |
C15 | 0.0376 (14) | 0.0402 (15) | 0.0376 (15) | 0.0041 (12) | 0.0004 (11) | 0.0164 (12) |
C16 | 0.0436 (17) | 0.0468 (17) | 0.0401 (17) | 0.0031 (13) | −0.0038 (13) | 0.0153 (13) |
C17 | 0.0332 (14) | 0.0401 (15) | 0.0434 (16) | 0.0045 (11) | 0.0018 (11) | 0.0163 (13) |
C18 | 0.0488 (18) | 0.0525 (19) | 0.0398 (16) | 0.0079 (15) | 0.0064 (13) | 0.0223 (14) |
C19 | 0.110 (4) | 0.086 (3) | 0.048 (2) | −0.009 (3) | −0.012 (2) | 0.036 (2) |
C20 | 0.075 (3) | 0.058 (2) | 0.061 (2) | 0.0138 (19) | 0.027 (2) | 0.0358 (18) |
Zn1—O1 | 1.996 (3) | C3—H3A | 0.9300 |
Zn1—O2 | 2.066 (2) | C4—C5 | 1.380 (5) |
Zn1—N4 | 2.103 (3) | C4—H4A | 0.9300 |
Zn1—N3 | 2.106 (2) | C5—C6 | 1.491 (4) |
Zn1—Cl1 | 2.2956 (12) | C6—C7 | 1.406 (4) |
O1—C17 | 1.256 (4) | C7—C8 | 1.378 (4) |
O2—C18 | 1.234 (4) | C7—H7A | 0.9300 |
N1—C1 | 1.338 (5) | C8—C9 | 1.493 (4) |
N1—C5 | 1.339 (5) | C9—C10 | 1.394 (4) |
N2—C6 | 1.378 (4) | C10—C11 | 1.388 (5) |
N2—C14 | 1.416 (4) | C10—H10A | 0.9300 |
N3—C8 | 1.350 (4) | C11—C12 | 1.362 (6) |
N3—C14 | 1.350 (4) | C11—H11A | 0.9300 |
N4—C9 | 1.339 (4) | C12—C13 | 1.372 (5) |
N4—C13 | 1.353 (4) | C12—H12A | 0.9300 |
N5—C16 | 1.136 (5) | C13—H13A | 0.9300 |
N6—C17 | 1.355 (4) | C14—C15 | 1.451 (4) |
N6—H6A | 0.8600 | C15—C16 | 1.413 (4) |
N6—H6B | 0.8600 | C15—C17 | 1.426 (4) |
N7—C18 | 1.314 (4) | C18—H1 | 0.91 (4) |
N7—C19 | 1.444 (6) | C19—H19A | 0.9600 |
N7—C20 | 1.465 (5) | C19—H19B | 0.9600 |
C1—C2 | 1.357 (6) | C19—H19C | 0.9600 |
C1—H1B | 0.9300 | C20—H20A | 0.9600 |
C2—C3 | 1.379 (6) | C20—H20B | 0.9600 |
C2—H2B | 0.9300 | C20—H20C | 0.9600 |
C3—C4 | 1.389 (5) | ||
Cg1···Cg1i | 3.809 (3) | Cg1···Cg2ii | 3.834 (3) |
O1—Zn1—O2 | 89.37 (11) | C8—C7—H7A | 120.9 |
O1—Zn1—N4 | 146.12 (12) | C6—C7—H7A | 120.9 |
O2—Zn1—N4 | 88.67 (11) | N3—C8—C7 | 123.4 (3) |
O1—Zn1—N3 | 87.29 (10) | N3—C8—C9 | 114.8 (3) |
O2—Zn1—N3 | 149.32 (11) | C7—C8—C9 | 121.8 (3) |
N4—Zn1—N3 | 77.58 (10) | N4—C9—C10 | 121.5 (3) |
O1—Zn1—Cl1 | 107.51 (9) | N4—C9—C8 | 115.4 (3) |
O2—Zn1—Cl1 | 103.78 (9) | C10—C9—C8 | 123.1 (3) |
N4—Zn1—Cl1 | 105.79 (8) | C11—C10—C9 | 118.8 (3) |
N3—Zn1—Cl1 | 106.30 (7) | C11—C10—H10A | 120.6 |
C17—O1—Zn1 | 126.9 (2) | C9—C10—H10A | 120.6 |
C18—O2—Zn1 | 125.8 (2) | C12—C11—C10 | 119.5 (3) |
C1—N1—C5 | 117.3 (3) | C12—C11—H11A | 120.3 |
C6—N2—C14 | 120.6 (3) | C10—C11—H11A | 120.3 |
C8—N3—C14 | 119.3 (2) | C11—C12—C13 | 119.2 (3) |
C8—N3—Zn1 | 114.61 (19) | C11—C12—H12A | 120.4 |
C14—N3—Zn1 | 124.8 (2) | C13—C12—H12A | 120.4 |
C9—N4—C13 | 118.6 (3) | N4—C13—C12 | 122.5 (3) |
C9—N4—Zn1 | 115.2 (2) | N4—C13—H13A | 118.8 |
C13—N4—Zn1 | 125.8 (2) | C12—C13—H13A | 118.8 |
C17—N6—H6A | 120.0 | N3—C14—N2 | 119.8 (3) |
C17—N6—H6B | 120.0 | N3—C14—C15 | 119.9 (3) |
H6A—N6—H6B | 120.0 | N2—C14—C15 | 120.3 (3) |
C18—N7—C19 | 120.9 (3) | C16—C15—C17 | 116.8 (3) |
C18—N7—C20 | 121.7 (3) | C16—C15—C14 | 117.0 (3) |
C19—N7—C20 | 117.4 (3) | C17—C15—C14 | 126.1 (3) |
N1—C1—C2 | 124.4 (4) | N5—C16—C15 | 177.3 (4) |
N1—C1—H1B | 117.8 | O1—C17—N6 | 115.8 (3) |
C2—C1—H1B | 117.8 | O1—C17—C15 | 125.4 (3) |
C1—C2—C3 | 118.3 (4) | N6—C17—C15 | 118.9 (3) |
C1—C2—H2B | 120.9 | O2—C18—N7 | 123.6 (3) |
C3—C2—H2B | 120.9 | O2—C18—H1 | 119 (3) |
C2—C3—C4 | 118.8 (4) | N7—C18—H1 | 117 (3) |
C2—C3—H3A | 120.6 | N7—C19—H19A | 109.5 |
C4—C3—H3A | 120.6 | N7—C19—H19B | 109.5 |
C5—C4—C3 | 118.8 (4) | H19A—C19—H19B | 109.5 |
C5—C4—H4A | 120.6 | N7—C19—H19C | 109.5 |
C3—C4—H4A | 120.6 | H19A—C19—H19C | 109.5 |
N1—C5—C4 | 122.3 (3) | H19B—C19—H19C | 109.5 |
N1—C5—C6 | 115.6 (3) | N7—C20—H20A | 109.5 |
C4—C5—C6 | 122.0 (3) | N7—C20—H20B | 109.5 |
N2—C6—C7 | 118.5 (3) | H20A—C20—H20B | 109.5 |
N2—C6—C5 | 120.6 (3) | N7—C20—H20C | 109.5 |
C7—C6—C5 | 120.8 (3) | H20A—C20—H20C | 109.5 |
C8—C7—C6 | 118.3 (3) | H20B—C20—H20C | 109.5 |
Symmetry codes: (i) −x+1, −y+2, −z; (ii) −x+2, −y+2, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N6—H6A···Cl1iii | 0.86 | 2.57 | 3.396 (4) | 161 |
C10—H10A···Cl1iv | 0.93 | 2.80 | 3.670 (4) | 156 |
Symmetry codes: (iii) −x+1, −y+1, −z+2; (iv) −x, −y, −z+2. |
Experimental details
Crystal data | |
Chemical formula | [Zn(C17H11N6O)Cl(C3H7NO)] |
Mr | 489.23 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 295 |
a, b, c (Å) | 8.5610 (17), 11.250 (2), 12.259 (3) |
α, β, γ (°) | 110.70 (3), 91.36 (3), 101.37 (3) |
V (Å3) | 1077.1 (4) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.30 |
Crystal size (mm) | 0.20 × 0.17 × 0.15 |
Data collection | |
Diffractometer | Enraf–Nonius CAD-4 diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10564, 4863, 4214 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.167, 1.09 |
No. of reflections | 4863 |
No. of parameters | 284 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 1.58, −0.58 |
Computer programs: CAD-4 Software (Enraf–Nonius, 1989), CAD-4 Software(Enraf–Nonius, 1989), NRCVAX (Gabe et al., 1989), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008), WinGX (Farrugia, 1999).
Cg1···Cg1i | 3.809 (3) | Cg1···Cg2ii | 3.834 (3) |
Symmetry codes: (i) −x+1, −y+2, −z; (ii) −x+2, −y+2, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N6—H6A···Cl1iii | 0.86 | 2.57 | 3.396 (4) | 161 |
C10—H10A···Cl1iv | 0.93 | 2.80 | 3.670 (4) | 156 |
Symmetry codes: (iii) −x+1, −y+1, −z+2; (iv) −x, −y, −z+2. |
Acknowledgements
This work was supported financially by the Doctoral Fund of Shandaong Province (grant No. 2007BS04046), People's Republic of China.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Recently, self-assembly of specially designed metal complexes have attracted intense attention due to their fascinating molecular structures and crystal-packing motifs (Chi et al., 2008). Several metal complexes with ligands containig heterocyclic pyrimidine and pyridine units have been studied previously to explore the role of hydrogen bonding in supramolecular assemblies (Patroniak et al., 2005; Kovbasyuk et al., 2005). Herein, we report the crystal structure of the title compound (I).
In (I) (Fig. 1), the zinc(II) ion is coordinated by one O anion and two N atoms of (Z)-3-amino-2-(4,6-di(pyridin-2-yl)pyrimidin-2-yl)-3- hydroxyacrylonitrile ligand, one O atom from DMF (DMF = N,N-dimethylformamide) and one Cl- anion, forming a distorted square-pyramidal geometry. The Zn—Cl distance of 2.2956 (12)Å is longer than the value of 2.212 (4) Å in ZnCl2(2,9-dimethyl-1,10-phenanthroline) (Preston et al., 1969) and 2.209 (1)Å in ZnCl2(C6H4N3CH2COPh)2 (Jian et al., 2004). The Zn—O bond lengths of 1.996 (3) and 2.066 (2)Å, respectively, are shorter than those reported previously (Patroniak et al., 2003). The Zn—N bond lengths are 2.103 (3) and 2.106 (2) Å, respectively, which are in disagreement with the corresponding five-coordination Zn—N distances found in similar compounds (Patroniak et al., 2003; Chi et al., 2008 ). The N3—Zn1—N4 bite angle is 77.58 (10)°, which is narrower than that in {Zn[4,6-bis(2-pyridyl)-2-aminopyrimidine](OOCCH3)2} [78.40 (7)°, Chi et al., 2008].
The five-membered chelate ring N3/C8/C9/N4/Zn1 (P1) is fairly planar, the deviation of atom Zn1 from the weighted least-squares plane N3/C8/C9/N4 is 0.079 Å. The dihedral angles formed by P1 with the planes N3/C14/C15/C17/O1/Zn1(P2), N2/C6—C8/N3/C14(P3), N4/C9—C13(P4) and N1/C1—C5(P5) are 16.67, 9.93, 5.02 and 19.49°, respectively. The dihedral angles formed by P3 with P4 and P5 are 5.61 and 16.55°, respectively. The dihedral angle between P2 and P4 is 14.55°.
In the crystal structure, intermolecular N—H···Cl hydrogen bonds (Table 2) link molecules into centrosymmetric dimers, which are further assembled by π-π interactions (Table 1) into layers parallel to ab plane. The crystal packing exhibits also weak intermolecular C—H···Cl interactions (Table 2).