organic compounds
2,4,6,8-Tetrakis(4-ethylphenyl)-3,7-diazabicyclo[3.3.1]nonan-9-one
aOrganic Chemistry Division, School of Advanced Sciences, VIT University, Vellore 632 014, India, and bDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: edward.tiekink@gmail.com
The bicyclo[3.3.1]nonane ring in the title compound, C39H44N2O, adopts a chair–boat conformation with the four benzene rings being directed away from the carbonyl group. The presence of C—H⋯O contacts leads to helical supramolecular chains along the b axis.
Related literature
For background to the synthesis and stereochemistry of 3,7-diazabicyclo[3.3.1]nonan-9-ones and their derivatives, see: Srikrishna & Vijaykumar (1998); Pathak et al. (2007); Vijayakumar & Sundaravadivelu (2005). For related structures, see: Natarajan et al. (2008); Fun et al. (2009). For see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S1600536810016569/hg2681sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810016569/hg2681Isup2.hkl
A mixture of acetone (0.2 ml), 4-ethylbenzaldehyde (2 ml) and dry ammonium acetate (0.6 g) were taken in a 1:4:2 molar ratio in ethanol (15 ml) and the resulting solution heated on water bath till the colour changed to red-orange. The mixture was allowed to stand for 24 h. The resultant sticky precipitate was washed with a mixture of diethyl ether and ethanol (4:1). The solid obtained was crystallized from a mixture of CHCl3-methanol (1:1) to yield (I). M.Pt: 495–497 K.
Carbon-bound H-atoms were placed in calculated positions (C—H 0.95 to 0.99 Å) and were included in the
in the riding model approximation, with Uiso(H) set to 1.2 to 1.5Uequiv(C). The amine-H atoms were refined with the distance restraint N–H = 0.91±0.1 Å, and with Uiso(H) = 1.2Uequiv(N).The synthesis and stereochemistry of 3,7-diazabicyclo[3.3.1]nonan-9-ones and their derivatives are of much interest owing to their diverse biological activities (Srikrishna & Vijaykumar, 1998; Pathak et al., 2007). The
of 3,7-diazabicyclo[3.3.1]nonanes (bispidines) is of interest from a theoretical view point and in particular the 2,4,6,8-tetraaryl-3,7-diazabicyclo[3.3.1]nonanes constitute an interesting case for study owing to the presence of four (Vijayakumar & Sundaravadivelu, 2005). If all occupy equatorial orientations, molecular models indicate their close proximity to both rings in the bicyclic systems. By contrast, if they are in the twin chair conformation, severe non-bonded interactions arise between occupying 2,8-positions and 4,6-positions. In the present report, in continuation of studies in this area (Natarajan et al., 2008; Fun et al., 2009), the synthesis and of a new example, the title compound (I), is described.In (I), the bicyclo[3.3.1]nonane ring adopts a chair-boat conformation with ring puckering amplitudes (Cremer & Pople, 1975) for the N1-containing ring (chair) being Q = 0.6318 (13) Å, θ = 6.38 (11) ° and φ = 183.5 (11) °. For the N2-ring, which adopts the boat form, the equivalent parameters are 0.8044 (12) Å, 88.29 (9) °, and 358.47 (9) °, respectively. The benzene rings adjacent to the N1 atom are each directed away from the carbonyl group and are effectively co-planar [dihedral angle = 6.91 (6) °]. The arrangement defines a planar facade to this side of the molecule, especially considering the ethyl groups are folded back to be orientated toward the rest of the molecule. By contrast, the benzene rings adjacent to the N2 atom are somewhat splayed with adjacent benzene rings forming dihedral angles of 54.17 (6) ° [(C8–C13)/(C16–C21)] and 48.45 (6) ° [(C24–C29)/(C32–C37)]. The dihedral angle between the (C16–C21) and (C24–C29) rings is 38.01 (6) ° so as to define a concave facade to this part of the molecule; the ethyl groups for these benzene rings are directed away from the molecule.
Despite there being two acidic N—H H atoms in the structure, neither play a significant role in the crystal packing owing to steric congestion. Rather, the carbonyl group participates in a C–H···O contact, Table 1, to generate a supramolecular chain with helical topology along the b axis, Fig. 2.
For background to the synthesis and stereochemistry of 3,7-diazabicyclo[3.3.1]nonan-9-ones and their derivatives, see: Srikrishna & Vijaykumar (1998); Pathak et al. (2007); Vijayakumar & Sundaravadivelu (2005). For related structures, see: Natarajan et al. (2008); Fun et al. (2009). For
see: Cremer & Pople (1975).Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).C39H44N2O | F(000) = 1200 |
Mr = 556.76 | Dx = 1.186 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 9317 reflections |
a = 13.381 (2) Å | θ = 2.3–28.2° |
b = 11.8217 (17) Å | µ = 0.07 mm−1 |
c = 19.989 (3) Å | T = 100 K |
β = 99.675 (4)° | Block, colourless |
V = 3117.1 (8) Å3 | 0.40 × 0.37 × 0.29 mm |
Z = 4 |
Bruker SMART APEX diffractometer | 7159 independent reflections |
Radiation source: fine-focus sealed tube | 5783 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.033 |
ω scans | θmax = 27.5°, θmin = 1.5° |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | h = −17→17 |
Tmin = 0.972, Tmax = 0.980 | k = −15→15 |
29235 measured reflections | l = −25→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.117 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0602P)2 + 0.9409P] where P = (Fo2 + 2Fc2)/3 |
7159 reflections | (Δ/σ)max < 0.001 |
389 parameters | Δρmax = 0.33 e Å−3 |
2 restraints | Δρmin = −0.27 e Å−3 |
C39H44N2O | V = 3117.1 (8) Å3 |
Mr = 556.76 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 13.381 (2) Å | µ = 0.07 mm−1 |
b = 11.8217 (17) Å | T = 100 K |
c = 19.989 (3) Å | 0.40 × 0.37 × 0.29 mm |
β = 99.675 (4)° |
Bruker SMART APEX diffractometer | 7159 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 1996) | 5783 reflections with I > 2σ(I) |
Tmin = 0.972, Tmax = 0.980 | Rint = 0.033 |
29235 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 2 restraints |
wR(F2) = 0.117 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.33 e Å−3 |
7159 reflections | Δρmin = −0.27 e Å−3 |
389 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.28740 (7) | 0.33935 (8) | 0.24139 (5) | 0.0258 (2) | |
N1 | 0.10571 (8) | 0.43495 (9) | 0.35954 (5) | 0.0176 (2) | |
H1N | 0.0682 (12) | 0.4050 (13) | 0.3883 (8) | 0.026* | |
N2 | 0.22518 (7) | 0.62144 (9) | 0.25571 (5) | 0.0159 (2) | |
H2N | 0.2198 (11) | 0.6951 (14) | 0.2501 (7) | 0.024* | |
C1 | 0.06877 (9) | 0.39020 (10) | 0.29151 (6) | 0.0171 (2) | |
H1 | 0.0782 | 0.3063 | 0.2923 | 0.020* | |
C2 | 0.13203 (9) | 0.44252 (10) | 0.24037 (6) | 0.0158 (2) | |
H2 | 0.1105 | 0.4076 | 0.1946 | 0.019* | |
C3 | 0.12289 (9) | 0.57417 (10) | 0.23417 (6) | 0.0149 (2) | |
H3 | 0.0769 | 0.6024 | 0.2651 | 0.018* | |
C4 | 0.26318 (9) | 0.59657 (10) | 0.32788 (6) | 0.0149 (2) | |
H4 | 0.2114 | 0.6212 | 0.3556 | 0.018* | |
C5 | 0.27729 (9) | 0.46582 (10) | 0.33456 (6) | 0.0160 (2) | |
H5 | 0.3506 | 0.4477 | 0.3498 | 0.019* | |
C6 | 0.21310 (9) | 0.41261 (10) | 0.38478 (6) | 0.0164 (2) | |
H6 | 0.2243 | 0.3290 | 0.3863 | 0.020* | |
C7 | 0.24032 (9) | 0.41035 (10) | 0.26704 (6) | 0.0172 (2) | |
C8 | −0.04266 (9) | 0.41626 (10) | 0.26868 (6) | 0.0175 (2) | |
C9 | −0.09358 (9) | 0.49827 (11) | 0.29977 (6) | 0.0213 (3) | |
H9 | −0.0603 | 0.5344 | 0.3398 | 0.026* | |
C10 | −0.19329 (9) | 0.52824 (12) | 0.27270 (7) | 0.0234 (3) | |
H10 | −0.2269 | 0.5843 | 0.2947 | 0.028* | |
C11 | −0.24389 (9) | 0.47706 (11) | 0.21398 (6) | 0.0214 (3) | |
C12 | −0.19308 (10) | 0.39341 (11) | 0.18375 (6) | 0.0222 (3) | |
H12 | −0.2265 | 0.3567 | 0.1439 | 0.027* | |
C13 | −0.09445 (10) | 0.36279 (10) | 0.21087 (6) | 0.0204 (3) | |
H13 | −0.0618 | 0.3047 | 0.1898 | 0.025* | |
C14 | −0.34976 (10) | 0.51291 (12) | 0.18224 (7) | 0.0267 (3) | |
H14A | −0.3800 | 0.5581 | 0.2154 | 0.032* | |
H14B | −0.3923 | 0.4448 | 0.1709 | 0.032* | |
C15 | −0.34962 (12) | 0.58247 (14) | 0.11839 (9) | 0.0382 (4) | |
H15A | −0.3103 | 0.6518 | 0.1298 | 0.057* | |
H15B | −0.4194 | 0.6022 | 0.0985 | 0.057* | |
H15C | −0.3190 | 0.5383 | 0.0856 | 0.057* | |
C16 | 0.08053 (9) | 0.60808 (10) | 0.16182 (6) | 0.0162 (2) | |
C17 | −0.02427 (9) | 0.61354 (10) | 0.14070 (6) | 0.0183 (2) | |
H17 | −0.0682 | 0.6043 | 0.1730 | 0.022* | |
C18 | −0.06514 (10) | 0.63238 (11) | 0.07294 (6) | 0.0216 (3) | |
H18 | −0.1366 | 0.6361 | 0.0597 | 0.026* | |
C19 | −0.00307 (10) | 0.64589 (10) | 0.02430 (6) | 0.0221 (3) | |
C20 | 0.10134 (10) | 0.64380 (11) | 0.04593 (6) | 0.0230 (3) | |
H20 | 0.1452 | 0.6552 | 0.0138 | 0.028* | |
C21 | 0.14298 (10) | 0.62529 (11) | 0.11384 (6) | 0.0205 (3) | |
H21 | 0.2145 | 0.6245 | 0.1273 | 0.025* | |
C22 | −0.04871 (12) | 0.66010 (12) | −0.04984 (7) | 0.0295 (3) | |
H22A | 0.0023 | 0.6378 | −0.0780 | 0.035* | |
H22B | −0.1072 | 0.6082 | −0.0609 | 0.035* | |
C23 | −0.08338 (14) | 0.77868 (13) | −0.06826 (8) | 0.0440 (4) | |
H23A | −0.1328 | 0.8022 | −0.0400 | 0.066* | |
H23B | −0.1149 | 0.7813 | −0.1162 | 0.066* | |
H23C | −0.0250 | 0.8299 | −0.0607 | 0.066* | |
C24 | 0.36114 (9) | 0.66011 (10) | 0.35158 (6) | 0.0156 (2) | |
C25 | 0.43406 (9) | 0.67254 (11) | 0.30988 (6) | 0.0192 (3) | |
H25 | 0.4223 | 0.6409 | 0.2656 | 0.023* | |
C26 | 0.52380 (9) | 0.73073 (11) | 0.33227 (6) | 0.0206 (3) | |
H26 | 0.5723 | 0.7386 | 0.3029 | 0.025* | |
C27 | 0.54357 (9) | 0.77772 (10) | 0.39710 (6) | 0.0186 (2) | |
C28 | 0.47053 (9) | 0.76542 (10) | 0.43854 (6) | 0.0180 (2) | |
H28 | 0.4822 | 0.7974 | 0.4828 | 0.022* | |
C29 | 0.38064 (9) | 0.70720 (10) | 0.41650 (6) | 0.0167 (2) | |
H29 | 0.3321 | 0.6994 | 0.4459 | 0.020* | |
C30 | 0.64131 (10) | 0.84034 (11) | 0.42213 (7) | 0.0240 (3) | |
H30A | 0.6909 | 0.8227 | 0.3920 | 0.029* | |
H30B | 0.6698 | 0.8133 | 0.4683 | 0.029* | |
C31 | 0.62664 (12) | 0.96826 (13) | 0.42412 (9) | 0.0362 (4) | |
H31A | 0.6050 | 0.9966 | 0.3779 | 0.054* | |
H31B | 0.6907 | 1.0043 | 0.4440 | 0.054* | |
H31C | 0.5747 | 0.9860 | 0.4517 | 0.054* | |
C32 | 0.24685 (9) | 0.46056 (10) | 0.45536 (6) | 0.0162 (2) | |
C33 | 0.34447 (9) | 0.43509 (10) | 0.48903 (6) | 0.0186 (2) | |
H33 | 0.3851 | 0.3832 | 0.4692 | 0.022* | |
C34 | 0.38284 (10) | 0.48437 (11) | 0.55082 (6) | 0.0208 (3) | |
H34 | 0.4498 | 0.4668 | 0.5723 | 0.025* | |
C35 | 0.32457 (10) | 0.55942 (10) | 0.58197 (6) | 0.0203 (3) | |
C36 | 0.22587 (10) | 0.58115 (11) | 0.54989 (6) | 0.0213 (3) | |
H36 | 0.1838 | 0.6294 | 0.5712 | 0.026* | |
C37 | 0.18765 (9) | 0.53323 (11) | 0.48694 (6) | 0.0199 (3) | |
H37 | 0.1205 | 0.5505 | 0.4655 | 0.024* | |
C38 | 0.37098 (11) | 0.61916 (12) | 0.64667 (7) | 0.0262 (3) | |
H38A | 0.4108 | 0.5643 | 0.6778 | 0.031* | |
H38B | 0.3164 | 0.6494 | 0.6694 | 0.031* | |
C39 | 0.43976 (11) | 0.71594 (12) | 0.63209 (7) | 0.0297 (3) | |
H39A | 0.4911 | 0.6869 | 0.6069 | 0.045* | |
H39B | 0.4732 | 0.7491 | 0.6750 | 0.045* | |
H39C | 0.3991 | 0.7740 | 0.6050 | 0.045* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0268 (5) | 0.0266 (5) | 0.0248 (5) | 0.0072 (4) | 0.0061 (4) | −0.0061 (4) |
N1 | 0.0160 (5) | 0.0227 (5) | 0.0141 (5) | −0.0028 (4) | 0.0027 (4) | 0.0020 (4) |
N2 | 0.0169 (5) | 0.0157 (5) | 0.0142 (5) | −0.0027 (4) | 0.0003 (4) | 0.0020 (4) |
C1 | 0.0193 (6) | 0.0147 (5) | 0.0167 (6) | −0.0024 (4) | 0.0015 (5) | −0.0001 (4) |
C2 | 0.0190 (6) | 0.0147 (5) | 0.0134 (5) | −0.0009 (4) | 0.0022 (4) | −0.0015 (4) |
C3 | 0.0160 (5) | 0.0151 (5) | 0.0134 (5) | −0.0012 (4) | 0.0022 (4) | −0.0005 (4) |
C4 | 0.0147 (5) | 0.0170 (6) | 0.0128 (5) | 0.0000 (4) | 0.0017 (4) | 0.0006 (4) |
C5 | 0.0155 (5) | 0.0163 (6) | 0.0159 (6) | 0.0010 (4) | 0.0023 (4) | 0.0004 (5) |
C6 | 0.0177 (6) | 0.0153 (5) | 0.0158 (6) | 0.0006 (4) | 0.0015 (4) | 0.0021 (4) |
C7 | 0.0206 (6) | 0.0150 (5) | 0.0171 (6) | −0.0006 (4) | 0.0065 (5) | 0.0019 (5) |
C8 | 0.0186 (6) | 0.0174 (6) | 0.0164 (6) | −0.0043 (4) | 0.0027 (5) | 0.0039 (5) |
C9 | 0.0186 (6) | 0.0282 (7) | 0.0170 (6) | −0.0045 (5) | 0.0028 (5) | −0.0023 (5) |
C10 | 0.0190 (6) | 0.0302 (7) | 0.0217 (6) | −0.0013 (5) | 0.0056 (5) | −0.0022 (5) |
C11 | 0.0171 (6) | 0.0252 (6) | 0.0214 (6) | −0.0064 (5) | 0.0021 (5) | 0.0044 (5) |
C12 | 0.0251 (6) | 0.0199 (6) | 0.0200 (6) | −0.0087 (5) | −0.0013 (5) | 0.0008 (5) |
C13 | 0.0236 (6) | 0.0154 (6) | 0.0218 (6) | −0.0047 (5) | 0.0024 (5) | −0.0005 (5) |
C14 | 0.0172 (6) | 0.0350 (8) | 0.0266 (7) | −0.0036 (5) | −0.0001 (5) | 0.0022 (6) |
C15 | 0.0277 (7) | 0.0431 (9) | 0.0424 (9) | 0.0038 (7) | 0.0022 (6) | 0.0170 (7) |
C16 | 0.0210 (6) | 0.0128 (5) | 0.0142 (6) | −0.0013 (4) | 0.0010 (4) | −0.0011 (4) |
C17 | 0.0206 (6) | 0.0170 (6) | 0.0168 (6) | 0.0000 (5) | 0.0023 (5) | 0.0003 (5) |
C18 | 0.0233 (6) | 0.0195 (6) | 0.0202 (6) | 0.0025 (5) | −0.0019 (5) | −0.0001 (5) |
C19 | 0.0337 (7) | 0.0156 (6) | 0.0155 (6) | 0.0037 (5) | −0.0005 (5) | 0.0003 (5) |
C20 | 0.0312 (7) | 0.0219 (6) | 0.0171 (6) | −0.0003 (5) | 0.0075 (5) | 0.0017 (5) |
C21 | 0.0228 (6) | 0.0203 (6) | 0.0183 (6) | −0.0016 (5) | 0.0031 (5) | 0.0002 (5) |
C22 | 0.0408 (8) | 0.0296 (7) | 0.0161 (6) | 0.0083 (6) | −0.0005 (6) | 0.0018 (5) |
C23 | 0.0600 (11) | 0.0255 (8) | 0.0363 (9) | −0.0081 (7) | −0.0212 (8) | 0.0107 (7) |
C24 | 0.0155 (5) | 0.0146 (5) | 0.0160 (6) | 0.0006 (4) | 0.0007 (4) | 0.0022 (4) |
C25 | 0.0204 (6) | 0.0225 (6) | 0.0147 (6) | −0.0023 (5) | 0.0030 (5) | −0.0002 (5) |
C26 | 0.0180 (6) | 0.0249 (6) | 0.0196 (6) | −0.0019 (5) | 0.0054 (5) | 0.0033 (5) |
C27 | 0.0166 (6) | 0.0174 (6) | 0.0205 (6) | −0.0006 (4) | −0.0007 (5) | 0.0032 (5) |
C28 | 0.0201 (6) | 0.0173 (6) | 0.0152 (6) | 0.0001 (5) | −0.0005 (5) | −0.0002 (5) |
C29 | 0.0175 (6) | 0.0165 (6) | 0.0163 (6) | 0.0013 (4) | 0.0036 (4) | 0.0018 (5) |
C30 | 0.0180 (6) | 0.0283 (7) | 0.0245 (7) | −0.0052 (5) | 0.0003 (5) | 0.0010 (5) |
C31 | 0.0313 (8) | 0.0279 (8) | 0.0468 (9) | −0.0117 (6) | −0.0009 (7) | 0.0017 (7) |
C32 | 0.0194 (6) | 0.0148 (5) | 0.0148 (6) | −0.0012 (4) | 0.0038 (4) | 0.0039 (4) |
C33 | 0.0217 (6) | 0.0166 (6) | 0.0177 (6) | 0.0035 (5) | 0.0039 (5) | 0.0021 (5) |
C34 | 0.0221 (6) | 0.0207 (6) | 0.0184 (6) | 0.0022 (5) | 0.0004 (5) | 0.0036 (5) |
C35 | 0.0277 (6) | 0.0191 (6) | 0.0143 (6) | −0.0019 (5) | 0.0046 (5) | 0.0039 (5) |
C36 | 0.0257 (6) | 0.0207 (6) | 0.0192 (6) | 0.0024 (5) | 0.0085 (5) | 0.0001 (5) |
C37 | 0.0190 (6) | 0.0214 (6) | 0.0196 (6) | 0.0022 (5) | 0.0044 (5) | 0.0036 (5) |
C38 | 0.0335 (7) | 0.0288 (7) | 0.0162 (6) | −0.0019 (6) | 0.0038 (5) | −0.0013 (5) |
C39 | 0.0353 (8) | 0.0311 (7) | 0.0237 (7) | −0.0059 (6) | 0.0079 (6) | −0.0089 (6) |
O1—C7 | 1.2135 (15) | C19—C20 | 1.3917 (19) |
N1—C6 | 1.4647 (15) | C19—C22 | 1.5143 (17) |
N1—C1 | 1.4654 (15) | C20—C21 | 1.3952 (17) |
N1—H1N | 0.897 (16) | C20—H20 | 0.9500 |
N2—C3 | 1.4742 (14) | C21—H21 | 0.9500 |
N2—C4 | 1.4763 (15) | C22—C23 | 1.503 (2) |
N2—H2N | 0.880 (16) | C22—H22A | 0.9900 |
C1—C8 | 1.5159 (16) | C22—H22B | 0.9900 |
C1—C2 | 1.5604 (16) | C23—H23A | 0.9800 |
C1—H1 | 1.0000 | C23—H23B | 0.9800 |
C2—C7 | 1.5063 (16) | C23—H23C | 0.9800 |
C2—C3 | 1.5644 (16) | C24—C25 | 1.3936 (17) |
C2—H2 | 1.0000 | C24—C29 | 1.3957 (17) |
C3—C16 | 1.5158 (16) | C25—C26 | 1.3909 (17) |
C3—H3 | 1.0000 | C25—H25 | 0.9500 |
C4—C24 | 1.5159 (16) | C26—C27 | 1.3939 (18) |
C4—C5 | 1.5603 (16) | C26—H26 | 0.9500 |
C4—H4 | 1.0000 | C27—C28 | 1.3910 (18) |
C5—C7 | 1.5073 (16) | C27—C30 | 1.5130 (17) |
C5—C6 | 1.5591 (16) | C28—C29 | 1.3916 (17) |
C5—H5 | 1.0000 | C28—H28 | 0.9500 |
C6—C32 | 1.5172 (16) | C29—H29 | 0.9500 |
C6—H6 | 1.0000 | C30—C31 | 1.526 (2) |
C8—C9 | 1.3901 (18) | C30—H30A | 0.9900 |
C8—C13 | 1.3950 (17) | C30—H30B | 0.9900 |
C9—C10 | 1.3985 (17) | C31—H31A | 0.9800 |
C9—H9 | 0.9500 | C31—H31B | 0.9800 |
C10—C11 | 1.3911 (18) | C31—H31C | 0.9800 |
C10—H10 | 0.9500 | C32—C37 | 1.3900 (17) |
C11—C12 | 1.3940 (19) | C32—C33 | 1.3981 (16) |
C11—C14 | 1.5123 (17) | C33—C34 | 1.3840 (17) |
C12—C13 | 1.3880 (18) | C33—H33 | 0.9500 |
C12—H12 | 0.9500 | C34—C35 | 1.3949 (18) |
C13—H13 | 0.9500 | C34—H34 | 0.9500 |
C14—C15 | 1.519 (2) | C35—C36 | 1.3917 (18) |
C14—H14A | 0.9900 | C35—C38 | 1.5123 (18) |
C14—H14B | 0.9900 | C36—C37 | 1.3962 (18) |
C15—H15A | 0.9800 | C36—H36 | 0.9500 |
C15—H15B | 0.9800 | C37—H37 | 0.9500 |
C15—H15C | 0.9800 | C38—C39 | 1.5269 (19) |
C16—C21 | 1.3889 (17) | C38—H38A | 0.9900 |
C16—C17 | 1.3964 (16) | C38—H38B | 0.9900 |
C17—C18 | 1.3909 (17) | C39—H39A | 0.9800 |
C17—H17 | 0.9500 | C39—H39B | 0.9800 |
C18—C19 | 1.3899 (19) | C39—H39C | 0.9800 |
C18—H18 | 0.9500 | ||
C6—N1—C1 | 114.38 (10) | C17—C18—H18 | 119.5 |
C6—N1—H1N | 109.3 (10) | C18—C19—C20 | 117.86 (11) |
C1—N1—H1N | 108.3 (10) | C18—C19—C22 | 120.48 (12) |
C3—N2—C4 | 111.13 (9) | C20—C19—C22 | 121.65 (12) |
C3—N2—H2N | 106.6 (10) | C19—C20—C21 | 121.40 (12) |
C4—N2—H2N | 109.2 (10) | C19—C20—H20 | 119.3 |
N1—C1—C8 | 111.55 (10) | C21—C20—H20 | 119.3 |
N1—C1—C2 | 109.23 (9) | C16—C21—C20 | 120.44 (12) |
C8—C1—C2 | 109.68 (9) | C16—C21—H21 | 119.8 |
N1—C1—H1 | 108.8 | C20—C21—H21 | 119.8 |
C8—C1—H1 | 108.8 | C23—C22—C19 | 113.60 (12) |
C2—C1—H1 | 108.8 | C23—C22—H22A | 108.8 |
C7—C2—C1 | 105.29 (9) | C19—C22—H22A | 108.8 |
C7—C2—C3 | 109.69 (9) | C23—C22—H22B | 108.8 |
C1—C2—C3 | 113.73 (10) | C19—C22—H22B | 108.8 |
C7—C2—H2 | 109.3 | H22A—C22—H22B | 107.7 |
C1—C2—H2 | 109.3 | C22—C23—H23A | 109.5 |
C3—C2—H2 | 109.3 | C22—C23—H23B | 109.5 |
N2—C3—C16 | 111.00 (9) | H23A—C23—H23B | 109.5 |
N2—C3—C2 | 107.31 (9) | C22—C23—H23C | 109.5 |
C16—C3—C2 | 110.51 (9) | H23A—C23—H23C | 109.5 |
N2—C3—H3 | 109.3 | H23B—C23—H23C | 109.5 |
C16—C3—H3 | 109.3 | C25—C24—C29 | 118.27 (11) |
C2—C3—H3 | 109.3 | C25—C24—C4 | 121.40 (10) |
N2—C4—C24 | 110.15 (9) | C29—C24—C4 | 120.33 (10) |
N2—C4—C5 | 107.32 (9) | C26—C25—C24 | 120.87 (11) |
C24—C4—C5 | 112.23 (9) | C26—C25—H25 | 119.6 |
N2—C4—H4 | 109.0 | C24—C25—H25 | 119.6 |
C24—C4—H4 | 109.0 | C25—C26—C27 | 121.00 (11) |
C5—C4—H4 | 109.0 | C25—C26—H26 | 119.5 |
C7—C5—C6 | 105.52 (9) | C27—C26—H26 | 119.5 |
C7—C5—C4 | 109.73 (9) | C28—C27—C26 | 118.00 (11) |
C6—C5—C4 | 112.51 (10) | C28—C27—C30 | 120.60 (11) |
C7—C5—H5 | 109.7 | C26—C27—C30 | 121.40 (11) |
C6—C5—H5 | 109.7 | C27—C28—C29 | 121.30 (11) |
C4—C5—H5 | 109.7 | C27—C28—H28 | 119.3 |
N1—C6—C32 | 111.99 (10) | C29—C28—H28 | 119.3 |
N1—C6—C5 | 108.68 (9) | C28—C29—C24 | 120.55 (11) |
C32—C6—C5 | 109.75 (9) | C28—C29—H29 | 119.7 |
N1—C6—H6 | 108.8 | C24—C29—H29 | 119.7 |
C32—C6—H6 | 108.8 | C27—C30—C31 | 112.68 (11) |
C5—C6—H6 | 108.8 | C27—C30—H30A | 109.1 |
O1—C7—C2 | 124.19 (11) | C31—C30—H30A | 109.1 |
O1—C7—C5 | 124.30 (11) | C27—C30—H30B | 109.1 |
C2—C7—C5 | 111.01 (10) | C31—C30—H30B | 109.1 |
C9—C8—C13 | 118.28 (11) | H30A—C30—H30B | 107.8 |
C9—C8—C1 | 122.57 (11) | C30—C31—H31A | 109.5 |
C13—C8—C1 | 118.94 (11) | C30—C31—H31B | 109.5 |
C8—C9—C10 | 120.74 (12) | H31A—C31—H31B | 109.5 |
C8—C9—H9 | 119.6 | C30—C31—H31C | 109.5 |
C10—C9—H9 | 119.6 | H31A—C31—H31C | 109.5 |
C11—C10—C9 | 120.91 (12) | H31B—C31—H31C | 109.5 |
C11—C10—H10 | 119.5 | C37—C32—C33 | 118.18 (11) |
C9—C10—H10 | 119.5 | C37—C32—C6 | 123.36 (11) |
C10—C11—C12 | 118.07 (12) | C33—C32—C6 | 118.38 (11) |
C10—C11—C14 | 121.40 (12) | C34—C33—C32 | 121.03 (11) |
C12—C11—C14 | 120.51 (12) | C34—C33—H33 | 119.5 |
C13—C12—C11 | 121.12 (12) | C32—C33—H33 | 119.5 |
C13—C12—H12 | 119.4 | C33—C34—C35 | 120.98 (12) |
C11—C12—H12 | 119.4 | C33—C34—H34 | 119.5 |
C12—C13—C8 | 120.84 (12) | C35—C34—H34 | 119.5 |
C12—C13—H13 | 119.6 | C36—C35—C34 | 118.04 (11) |
C8—C13—H13 | 119.6 | C36—C35—C38 | 121.96 (12) |
C11—C14—C15 | 111.77 (11) | C34—C35—C38 | 119.91 (12) |
C11—C14—H14A | 109.3 | C35—C36—C37 | 121.06 (12) |
C15—C14—H14A | 109.3 | C35—C36—H36 | 119.5 |
C11—C14—H14B | 109.3 | C37—C36—H36 | 119.5 |
C15—C14—H14B | 109.3 | C32—C37—C36 | 120.64 (11) |
H14A—C14—H14B | 107.9 | C32—C37—H37 | 119.7 |
C14—C15—H15A | 109.5 | C36—C37—H37 | 119.7 |
C14—C15—H15B | 109.5 | C35—C38—C39 | 111.14 (11) |
H15A—C15—H15B | 109.5 | C35—C38—H38A | 109.4 |
C14—C15—H15C | 109.5 | C39—C38—H38A | 109.4 |
H15A—C15—H15C | 109.5 | C35—C38—H38B | 109.4 |
H15B—C15—H15C | 109.5 | C39—C38—H38B | 109.4 |
C21—C16—C17 | 118.34 (11) | H38A—C38—H38B | 108.0 |
C21—C16—C3 | 121.71 (11) | C38—C39—H39A | 109.5 |
C17—C16—C3 | 119.74 (10) | C38—C39—H39B | 109.5 |
C18—C17—C16 | 120.82 (12) | H39A—C39—H39B | 109.5 |
C18—C17—H17 | 119.6 | C38—C39—H39C | 109.5 |
C16—C17—H17 | 119.6 | H39A—C39—H39C | 109.5 |
C19—C18—C17 | 121.08 (12) | H39B—C39—H39C | 109.5 |
C19—C18—H18 | 119.5 | ||
C6—N1—C1—C8 | 179.96 (9) | N2—C3—C16—C21 | 31.23 (15) |
C6—N1—C1—C2 | −58.63 (13) | C2—C3—C16—C21 | −87.71 (13) |
N1—C1—C2—C7 | 58.31 (12) | N2—C3—C16—C17 | −154.06 (11) |
C8—C1—C2—C7 | −179.15 (9) | C2—C3—C16—C17 | 86.99 (13) |
N1—C1—C2—C3 | −61.80 (12) | C21—C16—C17—C18 | 1.90 (18) |
C8—C1—C2—C3 | 60.74 (12) | C3—C16—C17—C18 | −172.98 (11) |
C4—N2—C3—C16 | 175.29 (9) | C16—C17—C18—C19 | 0.23 (19) |
C4—N2—C3—C2 | −63.86 (12) | C17—C18—C19—C20 | −2.14 (19) |
C7—C2—C3—N2 | 1.01 (12) | C17—C18—C19—C22 | 176.72 (12) |
C1—C2—C3—N2 | 118.60 (10) | C18—C19—C20—C21 | 1.95 (19) |
C7—C2—C3—C16 | 122.17 (10) | C22—C19—C20—C21 | −176.90 (12) |
C1—C2—C3—C16 | −120.24 (11) | C17—C16—C21—C20 | −2.09 (18) |
C3—N2—C4—C24 | −171.74 (9) | C3—C16—C21—C20 | 172.69 (11) |
C3—N2—C4—C5 | 65.81 (12) | C19—C20—C21—C16 | 0.17 (19) |
N2—C4—C5—C7 | −4.20 (12) | C18—C19—C22—C23 | 81.21 (18) |
C24—C4—C5—C7 | −125.34 (10) | C20—C19—C22—C23 | −99.97 (16) |
N2—C4—C5—C6 | −121.35 (10) | N2—C4—C24—C25 | −38.85 (15) |
C24—C4—C5—C6 | 117.50 (11) | C5—C4—C24—C25 | 80.66 (14) |
C1—N1—C6—C32 | −179.85 (9) | N2—C4—C24—C29 | 141.59 (11) |
C1—N1—C6—C5 | 58.74 (13) | C5—C4—C24—C29 | −98.90 (13) |
C7—C5—C6—N1 | −58.93 (12) | C29—C24—C25—C26 | −0.23 (18) |
C4—C5—C6—N1 | 60.69 (12) | C4—C24—C25—C26 | −179.80 (11) |
C7—C5—C6—C32 | 178.30 (9) | C24—C25—C26—C27 | 0.33 (19) |
C4—C5—C6—C32 | −62.08 (12) | C25—C26—C27—C28 | −0.48 (18) |
C1—C2—C7—O1 | 106.88 (13) | C25—C26—C27—C30 | 179.50 (12) |
C3—C2—C7—O1 | −130.38 (12) | C26—C27—C28—C29 | 0.56 (18) |
C1—C2—C7—C5 | −65.30 (12) | C30—C27—C28—C29 | −179.42 (11) |
C3—C2—C7—C5 | 57.44 (12) | C27—C28—C29—C24 | −0.49 (18) |
C6—C5—C7—O1 | −106.30 (13) | C25—C24—C29—C28 | 0.31 (17) |
C4—C5—C7—O1 | 132.25 (12) | C4—C24—C29—C28 | 179.88 (11) |
C6—C5—C7—C2 | 65.88 (12) | C28—C27—C30—C31 | −74.32 (16) |
C4—C5—C7—C2 | −55.57 (12) | C26—C27—C30—C31 | 105.70 (15) |
N1—C1—C8—C9 | 16.87 (16) | N1—C6—C32—C37 | −10.32 (16) |
C2—C1—C8—C9 | −104.28 (13) | C5—C6—C32—C37 | 110.47 (13) |
N1—C1—C8—C13 | −168.51 (10) | N1—C6—C32—C33 | 173.07 (10) |
C2—C1—C8—C13 | 70.33 (14) | C5—C6—C32—C33 | −66.13 (13) |
C13—C8—C9—C10 | −1.58 (18) | C37—C32—C33—C34 | −2.61 (18) |
C1—C8—C9—C10 | 173.07 (11) | C6—C32—C33—C34 | 174.17 (11) |
C8—C9—C10—C11 | −0.2 (2) | C32—C33—C34—C35 | 1.16 (19) |
C9—C10—C11—C12 | 1.33 (19) | C33—C34—C35—C36 | 1.54 (18) |
C9—C10—C11—C14 | −176.85 (12) | C33—C34—C35—C38 | −175.19 (12) |
C10—C11—C12—C13 | −0.73 (19) | C34—C35—C36—C37 | −2.78 (19) |
C14—C11—C12—C13 | 177.46 (12) | C38—C35—C36—C37 | 173.88 (12) |
C11—C12—C13—C8 | −1.04 (19) | C33—C32—C37—C36 | 1.37 (18) |
C9—C8—C13—C12 | 2.18 (18) | C6—C32—C37—C36 | −175.24 (11) |
C1—C8—C13—C12 | −172.67 (11) | C35—C36—C37—C32 | 1.33 (19) |
C10—C11—C14—C15 | 105.45 (15) | C36—C35—C38—C39 | −100.09 (15) |
C12—C11—C14—C15 | −72.69 (16) | C34—C35—C38—C39 | 76.51 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
C26—H26···O1i | 0.95 | 2.51 | 3.3837 (16) | 153 |
Symmetry code: (i) −x+1, y+1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C39H44N2O |
Mr | 556.76 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 13.381 (2), 11.8217 (17), 19.989 (3) |
β (°) | 99.675 (4) |
V (Å3) | 3117.1 (8) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.07 |
Crystal size (mm) | 0.40 × 0.37 × 0.29 |
Data collection | |
Diffractometer | Bruker SMART APEX diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 1996) |
Tmin, Tmax | 0.972, 0.980 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 29235, 7159, 5783 |
Rint | 0.033 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.117, 1.03 |
No. of reflections | 7159 |
No. of parameters | 389 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.33, −0.27 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
C26—H26···O1i | 0.95 | 2.51 | 3.3837 (16) | 153 |
Symmetry code: (i) −x+1, y+1/2, −z+1/2. |
Footnotes
‡Additional correspondence author, e-mail: kvpsvijayakumar@gmail.com.
Acknowledgements
VV is grateful to DST India for funding through the Young Scientist Scheme (Fast Track Proposal).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The synthesis and stereochemistry of 3,7-diazabicyclo[3.3.1]nonan-9-ones and their derivatives are of much interest owing to their diverse biological activities (Srikrishna & Vijaykumar, 1998; Pathak et al., 2007). The conformational analysis of 3,7-diazabicyclo[3.3.1]nonanes (bispidines) is of interest from a theoretical view point and in particular the 2,4,6,8-tetraaryl-3,7-diazabicyclo[3.3.1]nonanes constitute an interesting case for study owing to the presence of four aryl groups (Vijayakumar & Sundaravadivelu, 2005). If all aryl groups occupy equatorial orientations, molecular models indicate their close proximity to both rings in the bicyclic systems. By contrast, if they are in the twin chair conformation, severe non-bonded interactions arise between aryl groups occupying 2,8-positions and 4,6-positions. In the present report, in continuation of studies in this area (Natarajan et al., 2008; Fun et al., 2009), the synthesis and structure determination of a new example, the title compound (I), is described.
In (I), the bicyclo[3.3.1]nonane ring adopts a chair-boat conformation with ring puckering amplitudes (Cremer & Pople, 1975) for the N1-containing ring (chair) being Q = 0.6318 (13) Å, θ = 6.38 (11) ° and φ = 183.5 (11) °. For the N2-ring, which adopts the boat form, the equivalent parameters are 0.8044 (12) Å, 88.29 (9) °, and 358.47 (9) °, respectively. The benzene rings adjacent to the N1 atom are each directed away from the carbonyl group and are effectively co-planar [dihedral angle = 6.91 (6) °]. The arrangement defines a planar facade to this side of the molecule, especially considering the ethyl groups are folded back to be orientated toward the rest of the molecule. By contrast, the benzene rings adjacent to the N2 atom are somewhat splayed with adjacent benzene rings forming dihedral angles of 54.17 (6) ° [(C8–C13)/(C16–C21)] and 48.45 (6) ° [(C24–C29)/(C32–C37)]. The dihedral angle between the (C16–C21) and (C24–C29) rings is 38.01 (6) ° so as to define a concave facade to this part of the molecule; the ethyl groups for these benzene rings are directed away from the molecule.
Despite there being two acidic N—H H atoms in the structure, neither play a significant role in the crystal packing owing to steric congestion. Rather, the carbonyl group participates in a C–H···O contact, Table 1, to generate a supramolecular chain with helical topology along the b axis, Fig. 2.