organic compounds
(2E)-N-(3,5-Dibromo-4-methoxyphenyl)-2-(hydroxyimino)acetamide
aInstituto de Química, Departamento de Quimica Orgânica, Universidade Federal do Rio de Janeiro, Ilha do Fundão, CT, Bloco A, Rio de Janeiro 21949-900, RJ, Brazil, and bDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: edward.tiekink@gmail.com
The title compound, C9H8Br2N2O3, is planar (r.m.s. deviation = 0.030 Å) with the exception of the terminal methyl group which lies out of the plane [1.219 (3) Å]. The conformation about the C=N double bond [1.268 (3) Å] is E. An intramolecular N—H⋯N hydrogen bond occurs. Linear supramolecular chains along the b axis mediated by O—H⋯O hydrogen-bonding interactions feature in the These chains are also stabilized by weak C—H⋯N contacts.
Related literature
For the preparation of isonitrosoacetanilides from aniline derivatives, see: Garden et al. (1997). For the use of isonitrosoacetanilides as precursors of pharmacologically important see: da Silva et al. (2001); Garden et al. (2002); Matheus et al. (2007); Maronas et al. (2008). For related structures, see: Briansó et al. (1974); Plana et al. (1976).
Experimental
Crystal data
|
Refinement
|
Data collection: COLLECT (Hooft, 1998); cell DENZO (Otwinowski & Minor, 1997) and COLLECT; data reduction: DENZO and COLLECT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S1600536810018623/hg2689sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810018623/hg2689Isup2.hkl
The compound was prepared as previously reported from 3,5-dibromo-4-methoxyaniline, hydroxylamine.hydrogen sulfate in aqueous ethanol, containing sodium sulfate and CCl3CH(OH)2 (Garden et al., 1997). The sample for the crystallographic study was recrystallised from EtOH, m.p. 463 K.
The O-, N- and C-bound H atoms were geometrically placed (O–H = 0.84 Å, N–H = 0.88 Å and C–H = 0.95–0.98 Å) and refined as riding with Uiso(H) = 1.2-1.5Ueq(parent atom).
Isonitrosoacetanilides, readily available from aniline derivatives (Garden et al., 1997), have found use as precursors of pharmacologically important
(da Silva et al., 2001; Garden et al., 2002; Matheus et al., 2007; Maronas et al., 2008).The molecular structure of (I), Fig. 1, is essentially planar with the exception of the terminal methyl group. Thus, the r.m.s. deviation of all non-hydrogen atoms, excluding the methyl-C9 atom, is 0.030 Å; the C9 atom lies 1.219 (3) Å out of the plane. The conformation about the C2═N2 double bond [1.268 (3) Å] is E. The observed planarity is partially stabilised by an intramolecular N–H···N hydrogen bond (Table 1). There two other methoxy substituted 2-(hydroxyimino)-N-arylacetamide structures available for comparison,i.e. o-OMe (Plana et al., 1976) and p-OMe (Briansó et al., 1974) derivatives. The geometric parameters in these match closely those in (I). The major difference in the three structures relate to the non-planarity of (I) compared to the planarity in the literature structures. The proximity of the OMe group to two bromido substituents in (I) is the likely explanation for the deviation from planarity in (I). The crystal packing is dominated by O–H···O hydrogen bonding interactions that lead to the formation of a supramolecular linear chain along the b axis, Fig. 2 and Table 1. These chains are also stabilised by weak C–H···N contacts, Table 1.
For the preparation of isonitrosoacetanilides from aniline derivatives, see: Garden et al. (1997). For the use of isonitrosoacetanilides as precursors of pharmacologically important
see: da Silva et al. (2001); Garden et al. (2002); Matheus et al. (2007); Maronas et al. (2008). For related structures, see: Briansó et al. (1974); Plana et al. (1976).Data collection: COLLECT (Hooft, 1998); cell
DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); data reduction: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).C9H8Br2N2O3 | F(000) = 680 |
Mr = 351.98 | Dx = 2.036 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 2760 reflections |
a = 10.3841 (2) Å | θ = 2.9–27.5° |
b = 8.8535 (1) Å | µ = 7.05 mm−1 |
c = 13.0164 (3) Å | T = 120 K |
β = 106.356 (1)° | Plate, colourless |
V = 1148.24 (4) Å3 | 0.20 × 0.10 × 0.01 mm |
Z = 4 |
Nonius KappaCCD area-detector diffractometer | 2643 independent reflections |
Radiation source: Enraf Nonius FR591 rotating anode | 2306 reflections with I > 2σ(I) |
10 cm confocal mirrors monochromator | Rint = 0.036 |
Detector resolution: 9.091 pixels mm-1 | θmax = 27.5°, θmin = 3.0° |
φ and ω scans | h = −13→13 |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | k = −11→10 |
Tmin = 0.715, Tmax = 1.000 | l = −16→16 |
14309 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.028 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.090 | H-atom parameters constrained |
S = 1.16 | w = 1/[σ2(Fo2) + (0.0554P)2 + 0.0437P] where P = (Fo2 + 2Fc2)/3 |
2643 reflections | (Δ/σ)max = 0.001 |
149 parameters | Δρmax = 0.77 e Å−3 |
1 restraint | Δρmin = −0.86 e Å−3 |
C9H8Br2N2O3 | V = 1148.24 (4) Å3 |
Mr = 351.98 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.3841 (2) Å | µ = 7.05 mm−1 |
b = 8.8535 (1) Å | T = 120 K |
c = 13.0164 (3) Å | 0.20 × 0.10 × 0.01 mm |
β = 106.356 (1)° |
Nonius KappaCCD area-detector diffractometer | 2643 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2007) | 2306 reflections with I > 2σ(I) |
Tmin = 0.715, Tmax = 1.000 | Rint = 0.036 |
14309 measured reflections |
R[F2 > 2σ(F2)] = 0.028 | 1 restraint |
wR(F2) = 0.090 | H-atom parameters constrained |
S = 1.16 | Δρmax = 0.77 e Å−3 |
2643 reflections | Δρmin = −0.86 e Å−3 |
149 parameters |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.51024 (3) | 0.51328 (3) | 0.64286 (2) | 0.03073 (12) | |
Br2 | 0.57429 (3) | 1.12760 (3) | 0.76735 (2) | 0.03212 (12) | |
O1 | 0.6650 (2) | 0.4317 (2) | 1.04372 (14) | 0.0253 (4) | |
O2 | 0.7998 (2) | 0.6540 (2) | 1.37265 (15) | 0.0268 (4) | |
H2O | 0.8150 | 0.7416 | 1.3979 | 0.040* | |
O3 | 0.50326 (19) | 0.8555 (2) | 0.61613 (15) | 0.0248 (4) | |
N2 | 0.7577 (2) | 0.6746 (2) | 1.26323 (17) | 0.0228 (5) | |
N1 | 0.6742 (2) | 0.6890 (2) | 1.04718 (16) | 0.0234 (5) | |
H1N | 0.6916 | 0.7664 | 1.0914 | 0.028* | |
C1 | 0.6888 (3) | 0.5517 (3) | 1.0935 (2) | 0.0216 (5) | |
C2 | 0.7347 (3) | 0.5508 (3) | 1.2123 (2) | 0.0235 (5) | |
H2 | 0.7469 | 0.4577 | 1.2501 | 0.028* | |
C3 | 0.6344 (3) | 0.7255 (3) | 0.9367 (2) | 0.0217 (5) | |
C4 | 0.5979 (3) | 0.6159 (3) | 0.8574 (2) | 0.0221 (5) | |
H4 | 0.5995 | 0.5118 | 0.8755 | 0.027* | |
C5 | 0.5590 (3) | 0.6618 (3) | 0.7514 (2) | 0.0218 (5) | |
C6 | 0.5517 (2) | 0.8133 (3) | 0.7211 (2) | 0.0221 (5) | |
C7 | 0.5887 (3) | 0.9197 (3) | 0.8032 (2) | 0.0238 (5) | |
C8 | 0.6305 (3) | 0.8778 (3) | 0.9101 (2) | 0.0242 (6) | |
H8 | 0.6562 | 0.9524 | 0.9645 | 0.029* | |
C9 | 0.6056 (3) | 0.8606 (4) | 0.5605 (2) | 0.0332 (6) | |
H9A | 0.6683 | 0.9431 | 0.5894 | 0.050* | |
H9B | 0.5635 | 0.8776 | 0.4840 | 0.050* | |
H9C | 0.6544 | 0.7645 | 0.5704 | 0.050* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0466 (2) | 0.02593 (18) | 0.01798 (18) | −0.00608 (11) | 0.00633 (13) | −0.00244 (9) |
Br2 | 0.0420 (2) | 0.01905 (17) | 0.0298 (2) | −0.00089 (10) | 0.00100 (13) | 0.00607 (10) |
O1 | 0.0388 (11) | 0.0189 (9) | 0.0175 (9) | −0.0002 (8) | 0.0067 (8) | 0.0009 (7) |
O2 | 0.0400 (11) | 0.0222 (9) | 0.0154 (9) | −0.0022 (8) | 0.0033 (8) | 0.0001 (7) |
O3 | 0.0255 (9) | 0.0305 (10) | 0.0166 (9) | −0.0010 (7) | 0.0031 (7) | 0.0081 (7) |
N2 | 0.0274 (12) | 0.0235 (11) | 0.0159 (11) | −0.0009 (8) | 0.0033 (8) | 0.0000 (8) |
N1 | 0.0321 (12) | 0.0184 (10) | 0.0165 (11) | −0.0005 (9) | 0.0015 (9) | 0.0004 (8) |
C1 | 0.0235 (12) | 0.0220 (12) | 0.0181 (13) | −0.0011 (10) | 0.0042 (10) | 0.0000 (10) |
C2 | 0.0307 (14) | 0.0196 (12) | 0.0193 (13) | −0.0001 (10) | 0.0054 (10) | 0.0011 (10) |
C3 | 0.0243 (12) | 0.0209 (12) | 0.0190 (13) | 0.0013 (10) | 0.0046 (10) | 0.0015 (9) |
C4 | 0.0246 (13) | 0.0197 (12) | 0.0215 (14) | 0.0008 (9) | 0.0056 (10) | 0.0028 (9) |
C5 | 0.0214 (12) | 0.0250 (12) | 0.0184 (13) | −0.0019 (10) | 0.0045 (10) | −0.0018 (10) |
C6 | 0.0188 (12) | 0.0261 (13) | 0.0195 (13) | 0.0009 (10) | 0.0022 (10) | 0.0053 (10) |
C7 | 0.0255 (13) | 0.0184 (12) | 0.0248 (14) | −0.0010 (10) | 0.0028 (10) | 0.0060 (10) |
C8 | 0.0267 (13) | 0.0244 (13) | 0.0189 (13) | −0.0024 (10) | 0.0024 (10) | 0.0001 (9) |
C9 | 0.0345 (16) | 0.0420 (16) | 0.0244 (15) | 0.0030 (12) | 0.0103 (12) | 0.0102 (12) |
Br1—C5 | 1.892 (3) | C2—H2 | 0.9500 |
Br2—C7 | 1.894 (3) | C3—C4 | 1.390 (4) |
O1—C1 | 1.233 (3) | C3—C8 | 1.390 (4) |
O2—N2 | 1.379 (3) | C4—C5 | 1.385 (3) |
O2—H2o | 0.8400 | C4—H4 | 0.9500 |
O3—C6 | 1.368 (3) | C5—C6 | 1.394 (4) |
O3—C9 | 1.445 (3) | C6—C7 | 1.395 (4) |
N2—C2 | 1.268 (3) | C7—C8 | 1.386 (4) |
N1—C1 | 1.346 (3) | C8—H8 | 0.9500 |
N1—C3 | 1.417 (3) | C9—H9A | 0.9800 |
N1—H1N | 0.8800 | C9—H9B | 0.9800 |
C1—C2 | 1.484 (4) | C9—H9C | 0.9800 |
N2—O2—H2o | 104.6 | C4—C5—C6 | 122.8 (2) |
C6—O3—C9 | 113.1 (2) | C4—C5—Br1 | 118.79 (19) |
C2—N2—O2 | 112.6 (2) | C6—C5—Br1 | 118.39 (19) |
C1—N1—C3 | 128.6 (2) | O3—C6—C5 | 121.4 (2) |
C1—N1—H1N | 115.7 | O3—C6—C7 | 121.7 (2) |
C3—N1—H1N | 115.7 | C5—C6—C7 | 116.8 (2) |
O1—C1—N1 | 124.3 (2) | C8—C7—C6 | 121.9 (2) |
O1—C1—C2 | 120.1 (2) | C8—C7—Br2 | 119.2 (2) |
N1—C1—C2 | 115.7 (2) | C6—C7—Br2 | 118.81 (19) |
N2—C2—C1 | 119.9 (2) | C7—C8—C3 | 119.3 (2) |
N2—C2—H2 | 120.0 | C7—C8—H8 | 120.4 |
C1—C2—H2 | 120.0 | C3—C8—H8 | 120.4 |
C4—C3—C8 | 120.6 (2) | O3—C9—H9A | 109.5 |
C4—C3—N1 | 122.4 (2) | O3—C9—H9B | 109.5 |
C8—C3—N1 | 117.0 (2) | H9A—C9—H9B | 109.5 |
C5—C4—C3 | 118.5 (2) | O3—C9—H9C | 109.5 |
C5—C4—H4 | 120.7 | H9A—C9—H9C | 109.5 |
C3—C4—H4 | 120.7 | H9B—C9—H9C | 109.5 |
C3—N1—C1—O1 | −2.1 (4) | C4—C5—C6—O3 | −175.0 (2) |
C3—N1—C1—C2 | 178.9 (2) | Br1—C5—C6—O3 | 3.8 (3) |
O2—N2—C2—C1 | −179.9 (2) | C4—C5—C6—C7 | 1.3 (4) |
O1—C1—C2—N2 | −179.2 (3) | Br1—C5—C6—C7 | −179.86 (19) |
N1—C1—C2—N2 | −0.2 (4) | O3—C6—C7—C8 | 176.2 (2) |
C1—N1—C3—C4 | 2.9 (4) | C5—C6—C7—C8 | −0.1 (4) |
C1—N1—C3—C8 | −178.4 (3) | O3—C6—C7—Br2 | −1.3 (4) |
C8—C3—C4—C5 | 0.7 (4) | C5—C6—C7—Br2 | −177.56 (18) |
N1—C3—C4—C5 | 179.3 (2) | C6—C7—C8—C3 | −0.8 (4) |
C3—C4—C5—C6 | −1.7 (4) | Br2—C7—C8—C3 | 176.7 (2) |
C3—C4—C5—Br1 | 179.57 (19) | C4—C3—C8—C7 | 0.5 (4) |
C9—O3—C6—C5 | −88.4 (3) | N1—C3—C8—C7 | −178.2 (2) |
C9—O3—C6—C7 | 95.4 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1n···N2 | 0.88 | 2.30 | 2.702 (3) | 108 |
O2—H2o···O1i | 0.84 | 1.83 | 2.672 (3) | 175 |
C2—H2···N2ii | 0.95 | 2.51 | 3.345 (3) | 146 |
Symmetry codes: (i) −x+3/2, y+1/2, −z+5/2; (ii) −x+3/2, y−1/2, −z+5/2. |
Experimental details
Crystal data | |
Chemical formula | C9H8Br2N2O3 |
Mr | 351.98 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 120 |
a, b, c (Å) | 10.3841 (2), 8.8535 (1), 13.0164 (3) |
β (°) | 106.356 (1) |
V (Å3) | 1148.24 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 7.05 |
Crystal size (mm) | 0.20 × 0.10 × 0.01 |
Data collection | |
Diffractometer | Nonius KappaCCD area-detector |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2007) |
Tmin, Tmax | 0.715, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14309, 2643, 2306 |
Rint | 0.036 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.028, 0.090, 1.16 |
No. of reflections | 2643 |
No. of parameters | 149 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.77, −0.86 |
Computer programs: DENZO (Otwinowski & Minor, 1997) and COLLECT (Hooft, 1998), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1n···N2 | 0.88 | 2.30 | 2.702 (3) | 108 |
O2—H2o···O1i | 0.84 | 1.83 | 2.672 (3) | 175 |
C2—H2···N2ii | 0.95 | 2.51 | 3.345 (3) | 146 |
Symmetry codes: (i) −x+3/2, y+1/2, −z+5/2; (ii) −x+3/2, y−1/2, −z+5/2. |
Footnotes
‡Additional correspondence author, e-mail: garden@iq.ufrj.br.
Acknowledgements
The use of the EPSRC X-ray crystallographic service at the University of Southampton, England, and the valuable assistance of the staff there is gratefully acknowledged. SJG thanks CNPq and FAPERJ for financial support.
References
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Isonitrosoacetanilides, readily available from aniline derivatives (Garden et al., 1997), have found use as precursors of pharmacologically important heterocyclic compounds (da Silva et al., 2001; Garden et al., 2002; Matheus et al., 2007; Maronas et al., 2008).
The molecular structure of (I), Fig. 1, is essentially planar with the exception of the terminal methyl group. Thus, the r.m.s. deviation of all non-hydrogen atoms, excluding the methyl-C9 atom, is 0.030 Å; the C9 atom lies 1.219 (3) Å out of the plane. The conformation about the C2═N2 double bond [1.268 (3) Å] is E. The observed planarity is partially stabilised by an intramolecular N–H···N hydrogen bond (Table 1). There two other methoxy substituted 2-(hydroxyimino)-N-arylacetamide structures available for comparison,i.e. o-OMe (Plana et al., 1976) and p-OMe (Briansó et al., 1974) derivatives. The geometric parameters in these match closely those in (I). The major difference in the three structures relate to the non-planarity of (I) compared to the planarity in the literature structures. The proximity of the OMe group to two bromido substituents in (I) is the likely explanation for the deviation from planarity in (I). The crystal packing is dominated by O–H···O hydrogen bonding interactions that lead to the formation of a supramolecular linear chain along the b axis, Fig. 2 and Table 1. These chains are also stabilised by weak C–H···N contacts, Table 1.