organic compounds
2-Hydroxy-16-[(E)-4-hydroxy-3-methoxybenzylidene]-13-(4-hydroxy-3-methoxyphenyl)-11-methyl-1,11-diazapentacyclo[12.3.1.02,10.03,8.010,14]octadeca-3(8),4,6-triene-9,15-dione
aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bInstitute for Research in Molecular Medicine, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the title compound, C32H30N2O7, the piperidone ring adopts a chair conformation and the five-membered ring of the dihydroindenone ring system adopts an Intramolecular O—H⋯N and C—H⋯O hydrogen bonds occur. The dihedral angle between the two hydroxy-subsituted methoxyphenyl rings is 71.12 (5)°. In the molecules are connected by intermolecular O—H⋯O hydrogen bonds, forming layers parallel to (001). These layers are further connected by C—H⋯O hydrogen bonds, forming a three-dimensional network.
Related literature
For details of 1,3-dipolar cycloaddition, see: Padwa (1984). For applications of pyrrolidines, see: Dalko & Moisan (2004); Seayad & List (2005); Natarajan et al. (2006); O'Hagan (2000). For puckering parameters, see: Cremer & Pople (1975). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536810017216/is2545sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810017216/is2545Isup2.hkl
A mixture of 3,5-bis[(E)–(4-hydroxy-3-methoxyphenyl)methylidene] tetrahydro–4(1H)–pyridinone (0.100 g, 0.272 mmol), ninhydrin (0.049 g, 0.272 mmol), and sarcosine (0.024 g, 0.272 mmol) were dissolved in methanol (10 mL) and refluxed for 1 hour. After completion of the reaction as evident from TLC, the mixture was poured into water (50 mL). The precipitated solid was filtered and washed with water to afford the product which was recrystallized from petrolium ether-ethyl acetate mixture (1:1) to reveal the title compound as yellow crystals.
Atoms H1O2, H1O5 and H1O7 were located in a difference Fourier map and refined freely. The remaining H atoms were positioned geometrically (C–H = 0.93–0.98 Å) and were refined using a riding model, with Uiso(H) = 1.2 or 1.5Ueq(C). A rotating group model was applied to the methyl groups.
1,3-Dipolar cycloadditions represent one of the most versatile tools for the construction of five-membered heterocycles (Padwa, 1984). A diverse array of biologically active molecules contain substituted pyrrolidine cores (O'Hagan, 2000). Pyrrolidines are important building blocks in organic synthesis, and in the past years have emerged as privileged organocatalysts (Dalko & Moisan, 2004; Seayad & List, 2005). Compounds containing the piperidine subunit act as excellent inhibitors of p38 activity and TNF–α release (Natarajan et al., 2006) and consequently, the efficient preparation of these heterocycles has received significant attention.
The molecular structure of the title compound is shown in Fig. 1. The piperidone (N1/C1–C5) ring adopts a chair conformation [Q = 0.6146 (12) Å, Θ = 145.39 (11)°, φ = 120.0 (2)° ; Cremer & Pople, 1975]. The pyrrolidine ring (N2/C4/C6–C8) adopts an [puckering parameters Q = 0.3365 (12) Å, φ = 84.3 (2)°]. The five membered ring of the ninhydrin system adopts an and its flap atom C8 deviates from the mean plane formed by other atoms, C9–C16, by 0.0702 (12) Å. The dihedral angle between the two hydroxy subsituted methoxyphenyl rings (C18–C23 and C26–C31) is 71.12 (5)°.
In the crystal packing (Fig. 2), molecules are connected by intermolecular O2—H1O5···O2, O7—H1O7···O4, C1—H1A···O7, C13—H13A···O7 and C32—H32A···O3 hydrogen bonds to form a three–dimensional network.
For details of 1,3-dipolar
see: Padwa (1984). For applications of pyrrolidines, see: Dalko & Moisan (2004); Seayad & List (2005); Natarajan et al. (2006); O'Hagan (2000). For puckering parameters, see: Cremer & Pople (1975). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The asymmetric unit of the title compound, showing 30% probability displacement ellipsoids and the atom-numbering scheme (H atoms are omitted for clarity). | |
Fig. 2. The crystal packing of the title compound, showing hydrogen-bonded (dashed lines) network. H atoms are not involving the hydrogen bond interactions are omitted for clarity. |
C32H30N2O7 | F(000) = 2336 |
Mr = 554.58 | Dx = 1.403 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 9860 reflections |
a = 14.7989 (11) Å | θ = 2.3–32.6° |
b = 15.4918 (11) Å | µ = 0.10 mm−1 |
c = 22.9079 (17) Å | T = 100 K |
V = 5251.9 (7) Å3 | Block, yellow |
Z = 8 | 0.39 × 0.39 × 0.31 mm |
Bruker APEXII DUO CCD area-detector diffractometer | 9672 independent reflections |
Radiation source: fine-focus sealed tube | 7897 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.048 |
φ and ω scans | θmax = 32.7°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −22→19 |
Tmin = 0.962, Tmax = 0.969 | k = −23→23 |
130228 measured reflections | l = −33→34 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.145 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | w = 1/[σ2(Fo2) + (0.0657P)2 + 3.1726P] where P = (Fo2 + 2Fc2)/3 |
9672 reflections | (Δ/σ)max = 0.001 |
385 parameters | Δρmax = 0.59 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C32H30N2O7 | V = 5251.9 (7) Å3 |
Mr = 554.58 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 14.7989 (11) Å | µ = 0.10 mm−1 |
b = 15.4918 (11) Å | T = 100 K |
c = 22.9079 (17) Å | 0.39 × 0.39 × 0.31 mm |
Bruker APEXII DUO CCD area-detector diffractometer | 9672 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 7897 reflections with I > 2σ(I) |
Tmin = 0.962, Tmax = 0.969 | Rint = 0.048 |
130228 measured reflections |
R[F2 > 2σ(F2)] = 0.051 | 0 restraints |
wR(F2) = 0.145 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.09 | Δρmax = 0.59 e Å−3 |
9672 reflections | Δρmin = −0.25 e Å−3 |
385 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All s.u.'s (except the s.u. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell s.u.'s are taken into account individually in the estimation of s.u.'s in distances, angles and torsion angles; correlations between s.u.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell s.u.'s is used for estimating s.u.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.30327 (6) | −0.18897 (6) | 0.41100 (4) | 0.02184 (18) | |
O2 | 0.19750 (6) | 0.13975 (5) | 0.33372 (4) | 0.01979 (17) | |
O3 | 0.16366 (7) | −0.05592 (6) | 0.48344 (4) | 0.02408 (19) | |
O4 | −0.17817 (6) | −0.29718 (6) | 0.38154 (4) | 0.02209 (18) | |
O5 | −0.21109 (7) | −0.28735 (7) | 0.27082 (5) | 0.0265 (2) | |
O6 | 0.62083 (6) | −0.24385 (6) | 0.41434 (5) | 0.02473 (19) | |
O7 | 0.72935 (6) | −0.13939 (6) | 0.35393 (4) | 0.02204 (18) | |
N1 | 0.22581 (7) | 0.00074 (6) | 0.29585 (4) | 0.01670 (18) | |
N2 | 0.27389 (7) | 0.09389 (6) | 0.43104 (4) | 0.01600 (17) | |
C1 | 0.18714 (8) | −0.08658 (7) | 0.28648 (5) | 0.0184 (2) | |
H1A | 0.2167 | −0.1127 | 0.2531 | 0.022* | |
H1B | 0.1235 | −0.0807 | 0.2771 | 0.022* | |
C2 | 0.19647 (8) | −0.14690 (7) | 0.33836 (5) | 0.0168 (2) | |
C3 | 0.27292 (8) | −0.13242 (7) | 0.37943 (5) | 0.01594 (19) | |
C4 | 0.30624 (7) | −0.03950 (7) | 0.38134 (5) | 0.01382 (18) | |
C5 | 0.31885 (8) | −0.00938 (8) | 0.31723 (5) | 0.0174 (2) | |
H5A | 0.3514 | 0.0449 | 0.3155 | 0.021* | |
H5B | 0.3513 | −0.0523 | 0.2946 | 0.021* | |
C6 | 0.38290 (8) | −0.02131 (7) | 0.42424 (5) | 0.01551 (19) | |
H6A | 0.3693 | −0.0526 | 0.4604 | 0.019* | |
C7 | 0.37136 (8) | 0.07523 (8) | 0.43694 (6) | 0.0204 (2) | |
H7A | 0.3919 | 0.0886 | 0.4761 | 0.025* | |
H7B | 0.4060 | 0.1094 | 0.4094 | 0.025* | |
C8 | 0.22873 (7) | 0.02205 (7) | 0.40137 (5) | 0.01406 (18) | |
C9 | 0.18191 (8) | 0.05074 (7) | 0.34284 (5) | 0.01539 (19) | |
C10 | 0.08268 (8) | 0.03156 (7) | 0.35136 (5) | 0.0175 (2) | |
C11 | 0.01111 (9) | 0.04857 (9) | 0.31373 (6) | 0.0237 (2) | |
H11A | 0.0207 | 0.0761 | 0.2782 | 0.028* | |
C12 | −0.07522 (9) | 0.02326 (10) | 0.33061 (7) | 0.0294 (3) | |
H12A | −0.1239 | 0.0349 | 0.3062 | 0.035* | |
C13 | −0.09026 (9) | −0.01932 (10) | 0.38355 (7) | 0.0281 (3) | |
H13A | −0.1484 | −0.0366 | 0.3935 | 0.034* | |
C14 | −0.01931 (9) | −0.03585 (8) | 0.42110 (6) | 0.0223 (2) | |
H14A | −0.0289 | −0.0638 | 0.4565 | 0.027* | |
C15 | 0.06727 (8) | −0.00943 (7) | 0.40453 (5) | 0.0174 (2) | |
C16 | 0.15262 (8) | −0.02051 (7) | 0.43663 (5) | 0.0167 (2) | |
C17 | 0.13529 (8) | −0.20654 (7) | 0.35528 (5) | 0.0180 (2) | |
H17A | 0.1508 | −0.2383 | 0.3882 | 0.022* | |
C18 | 0.04812 (8) | −0.22830 (7) | 0.32917 (5) | 0.0180 (2) | |
C19 | 0.02938 (9) | −0.22466 (8) | 0.26938 (6) | 0.0216 (2) | |
H19A | 0.0746 | −0.2094 | 0.2432 | 0.026* | |
C20 | −0.05737 (9) | −0.24393 (8) | 0.24901 (6) | 0.0228 (2) | |
H20A | −0.0695 | −0.2408 | 0.2092 | 0.027* | |
C21 | −0.12563 (8) | −0.26768 (8) | 0.28732 (5) | 0.0197 (2) | |
C22 | −0.10679 (8) | −0.27274 (7) | 0.34744 (5) | 0.0173 (2) | |
C23 | −0.02099 (8) | −0.25368 (7) | 0.36762 (5) | 0.0173 (2) | |
H23A | −0.0088 | −0.2577 | 0.4073 | 0.021* | |
C24 | −0.15933 (9) | −0.31881 (9) | 0.44084 (6) | 0.0241 (2) | |
H24A | −0.2137 | −0.3384 | 0.4594 | 0.036* | |
H24B | −0.1369 | −0.2688 | 0.4609 | 0.036* | |
H24C | −0.1147 | −0.3638 | 0.4421 | 0.036* | |
C25 | 0.23206 (9) | 0.12884 (9) | 0.48352 (6) | 0.0251 (3) | |
H25A | 0.1692 | 0.1397 | 0.4762 | 0.038* | |
H25B | 0.2615 | 0.1818 | 0.4941 | 0.038* | |
H25C | 0.2379 | 0.0880 | 0.5148 | 0.038* | |
C26 | 0.47590 (7) | −0.04947 (7) | 0.40435 (5) | 0.01503 (19) | |
C27 | 0.50398 (8) | −0.13305 (7) | 0.41924 (5) | 0.0173 (2) | |
H27A | 0.4659 | −0.1684 | 0.4409 | 0.021* | |
C28 | 0.58767 (8) | −0.16339 (7) | 0.40201 (5) | 0.0175 (2) | |
C29 | 0.64600 (8) | −0.11047 (8) | 0.36990 (5) | 0.0172 (2) | |
C30 | 0.61868 (8) | −0.02804 (8) | 0.35443 (5) | 0.0192 (2) | |
H30A | 0.6569 | 0.0072 | 0.3328 | 0.023* | |
C31 | 0.53351 (8) | 0.00208 (7) | 0.37139 (5) | 0.0182 (2) | |
H31A | 0.5152 | 0.0572 | 0.3605 | 0.022* | |
C32 | 0.55997 (10) | −0.30334 (9) | 0.44075 (7) | 0.0302 (3) | |
H32A | 0.5886 | −0.3587 | 0.4441 | 0.045* | |
H32B | 0.5067 | −0.3085 | 0.4171 | 0.045* | |
H32C | 0.5436 | −0.2829 | 0.4789 | 0.045* | |
H1O5 | −0.2099 (15) | −0.3091 (16) | 0.2347 (10) | 0.044 (6)* | |
H1O7 | 0.7311 (17) | −0.1945 (17) | 0.3626 (11) | 0.052 (7)* | |
H1O2 | 0.2281 (16) | 0.1577 (16) | 0.3664 (11) | 0.049 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0183 (4) | 0.0159 (4) | 0.0313 (5) | 0.0002 (3) | −0.0017 (3) | 0.0062 (3) |
O2 | 0.0250 (4) | 0.0128 (3) | 0.0216 (4) | −0.0027 (3) | −0.0060 (3) | 0.0032 (3) |
O3 | 0.0225 (4) | 0.0266 (4) | 0.0231 (4) | 0.0019 (3) | 0.0039 (3) | 0.0080 (3) |
O4 | 0.0167 (4) | 0.0276 (4) | 0.0219 (4) | 0.0001 (3) | 0.0013 (3) | 0.0012 (3) |
O5 | 0.0192 (4) | 0.0359 (5) | 0.0242 (4) | −0.0008 (4) | −0.0032 (3) | −0.0094 (4) |
O6 | 0.0202 (4) | 0.0180 (4) | 0.0360 (5) | 0.0060 (3) | 0.0009 (4) | 0.0064 (4) |
O7 | 0.0148 (4) | 0.0233 (4) | 0.0280 (4) | 0.0034 (3) | 0.0026 (3) | 0.0001 (3) |
N1 | 0.0174 (4) | 0.0166 (4) | 0.0160 (4) | −0.0023 (3) | −0.0005 (3) | 0.0009 (3) |
N2 | 0.0147 (4) | 0.0148 (4) | 0.0185 (4) | 0.0008 (3) | −0.0015 (3) | −0.0027 (3) |
C1 | 0.0207 (5) | 0.0166 (5) | 0.0178 (5) | −0.0025 (4) | −0.0009 (4) | −0.0010 (4) |
C2 | 0.0172 (5) | 0.0135 (4) | 0.0198 (5) | 0.0001 (4) | 0.0010 (4) | −0.0012 (4) |
C3 | 0.0148 (5) | 0.0136 (4) | 0.0194 (5) | −0.0003 (3) | 0.0020 (4) | 0.0006 (4) |
C4 | 0.0131 (4) | 0.0125 (4) | 0.0159 (4) | 0.0000 (3) | 0.0006 (3) | 0.0009 (3) |
C5 | 0.0164 (5) | 0.0189 (5) | 0.0170 (5) | −0.0018 (4) | 0.0014 (4) | 0.0023 (4) |
C6 | 0.0137 (4) | 0.0149 (4) | 0.0179 (4) | 0.0011 (3) | −0.0007 (4) | 0.0003 (4) |
C7 | 0.0152 (5) | 0.0171 (5) | 0.0290 (6) | 0.0006 (4) | −0.0022 (4) | −0.0055 (4) |
C8 | 0.0132 (4) | 0.0128 (4) | 0.0161 (4) | 0.0003 (3) | −0.0005 (3) | 0.0009 (3) |
C9 | 0.0162 (5) | 0.0123 (4) | 0.0177 (4) | −0.0015 (3) | −0.0017 (4) | 0.0021 (3) |
C10 | 0.0158 (5) | 0.0159 (5) | 0.0208 (5) | 0.0000 (4) | −0.0023 (4) | −0.0021 (4) |
C11 | 0.0196 (5) | 0.0277 (6) | 0.0238 (5) | 0.0008 (4) | −0.0056 (4) | −0.0026 (5) |
C12 | 0.0182 (6) | 0.0388 (7) | 0.0310 (7) | −0.0002 (5) | −0.0062 (5) | −0.0086 (6) |
C13 | 0.0165 (5) | 0.0340 (7) | 0.0337 (7) | −0.0048 (5) | 0.0012 (5) | −0.0092 (5) |
C14 | 0.0178 (5) | 0.0221 (5) | 0.0271 (6) | −0.0030 (4) | 0.0045 (4) | −0.0041 (4) |
C15 | 0.0150 (5) | 0.0153 (4) | 0.0221 (5) | 0.0003 (4) | 0.0015 (4) | −0.0018 (4) |
C16 | 0.0157 (5) | 0.0147 (4) | 0.0197 (5) | 0.0008 (4) | 0.0029 (4) | 0.0005 (4) |
C17 | 0.0177 (5) | 0.0129 (4) | 0.0235 (5) | −0.0007 (4) | 0.0000 (4) | −0.0009 (4) |
C18 | 0.0181 (5) | 0.0135 (4) | 0.0224 (5) | −0.0010 (4) | −0.0006 (4) | −0.0011 (4) |
C19 | 0.0229 (6) | 0.0205 (5) | 0.0212 (5) | −0.0046 (4) | 0.0016 (4) | −0.0039 (4) |
C20 | 0.0263 (6) | 0.0234 (5) | 0.0186 (5) | −0.0029 (5) | −0.0009 (4) | −0.0037 (4) |
C21 | 0.0187 (5) | 0.0190 (5) | 0.0215 (5) | 0.0009 (4) | −0.0025 (4) | −0.0052 (4) |
C22 | 0.0160 (5) | 0.0148 (4) | 0.0211 (5) | 0.0016 (4) | 0.0013 (4) | −0.0010 (4) |
C23 | 0.0174 (5) | 0.0144 (4) | 0.0201 (5) | 0.0009 (4) | −0.0011 (4) | −0.0001 (4) |
C24 | 0.0236 (6) | 0.0276 (6) | 0.0209 (5) | 0.0023 (5) | 0.0024 (4) | 0.0006 (5) |
C25 | 0.0214 (6) | 0.0282 (6) | 0.0258 (6) | 0.0013 (5) | 0.0021 (5) | −0.0103 (5) |
C26 | 0.0130 (4) | 0.0142 (4) | 0.0178 (4) | 0.0004 (3) | −0.0005 (4) | 0.0003 (3) |
C27 | 0.0144 (5) | 0.0158 (4) | 0.0217 (5) | 0.0007 (4) | −0.0006 (4) | 0.0034 (4) |
C28 | 0.0160 (5) | 0.0152 (4) | 0.0212 (5) | 0.0024 (4) | −0.0024 (4) | 0.0013 (4) |
C29 | 0.0127 (4) | 0.0189 (5) | 0.0201 (5) | 0.0006 (4) | −0.0007 (4) | −0.0018 (4) |
C30 | 0.0170 (5) | 0.0170 (5) | 0.0235 (5) | −0.0020 (4) | 0.0028 (4) | −0.0002 (4) |
C31 | 0.0172 (5) | 0.0136 (4) | 0.0237 (5) | −0.0002 (4) | 0.0012 (4) | 0.0007 (4) |
C32 | 0.0312 (7) | 0.0188 (5) | 0.0406 (7) | 0.0033 (5) | 0.0011 (6) | 0.0099 (5) |
O1—C3 | 1.2216 (14) | C11—C12 | 1.391 (2) |
O2—C9 | 1.4137 (13) | C11—H11A | 0.9300 |
O2—H1O2 | 0.92 (2) | C12—C13 | 1.398 (2) |
O3—C16 | 1.2154 (15) | C12—H12A | 0.9300 |
O4—C22 | 1.3674 (15) | C13—C14 | 1.381 (2) |
O4—C24 | 1.4266 (16) | C13—H13A | 0.9300 |
O5—C21 | 1.3547 (15) | C14—C15 | 1.3975 (17) |
O5—H1O5 | 0.89 (2) | C14—H14A | 0.9300 |
O6—C28 | 1.3690 (14) | C15—C16 | 1.4717 (17) |
O6—C32 | 1.4235 (17) | C17—C18 | 1.4613 (16) |
O7—C29 | 1.3624 (14) | C17—H17A | 0.9300 |
O7—H1O7 | 0.88 (3) | C18—C19 | 1.3987 (17) |
N1—C5 | 1.4699 (15) | C18—C23 | 1.4059 (17) |
N1—C9 | 1.4768 (15) | C19—C20 | 1.3982 (18) |
N1—C1 | 1.4844 (15) | C19—H19A | 0.9300 |
N2—C25 | 1.4567 (16) | C20—C21 | 1.3879 (18) |
N2—C8 | 1.4653 (14) | C20—H20A | 0.9300 |
N2—C7 | 1.4773 (15) | C21—C22 | 1.4072 (17) |
C1—C2 | 1.5181 (17) | C22—C23 | 1.3831 (16) |
C1—H1A | 0.9700 | C23—H23A | 0.9300 |
C1—H1B | 0.9700 | C24—H24A | 0.9600 |
C2—C17 | 1.3504 (16) | C24—H24B | 0.9600 |
C2—C3 | 1.4885 (16) | C24—H24C | 0.9600 |
C3—C4 | 1.5222 (15) | C25—H25A | 0.9600 |
C4—C6 | 1.5271 (16) | C25—H25B | 0.9600 |
C4—C5 | 1.5522 (16) | C25—H25C | 0.9600 |
C4—C8 | 1.5606 (15) | C26—C31 | 1.3909 (16) |
C5—H5A | 0.9700 | C26—C27 | 1.4020 (15) |
C5—H5B | 0.9700 | C27—C28 | 1.3822 (16) |
C6—C26 | 1.5141 (15) | C27—H27A | 0.9300 |
C6—C7 | 1.5331 (16) | C28—C29 | 1.3995 (17) |
C6—H6A | 0.9800 | C29—C30 | 1.3854 (17) |
C7—H7A | 0.9700 | C30—C31 | 1.3992 (16) |
C7—H7B | 0.9700 | C30—H30A | 0.9300 |
C8—C16 | 1.5349 (16) | C31—H31A | 0.9300 |
C8—C9 | 1.5734 (15) | C32—H32A | 0.9600 |
C9—C10 | 1.5109 (16) | C32—H32B | 0.9600 |
C10—C11 | 1.3908 (17) | C32—H32C | 0.9600 |
C10—C15 | 1.3924 (17) | ||
C9—O2—H1O2 | 104.8 (15) | C14—C13—H13A | 119.8 |
C22—O4—C24 | 117.27 (10) | C12—C13—H13A | 119.8 |
C21—O5—H1O5 | 109.0 (14) | C13—C14—C15 | 118.26 (13) |
C28—O6—C32 | 116.76 (10) | C13—C14—H14A | 120.9 |
C29—O7—H1O7 | 106.6 (16) | C15—C14—H14A | 120.9 |
C5—N1—C9 | 103.00 (9) | C10—C15—C14 | 121.42 (11) |
C5—N1—C1 | 108.19 (9) | C10—C15—C16 | 110.47 (10) |
C9—N1—C1 | 114.44 (9) | C14—C15—C16 | 128.10 (11) |
C25—N2—C8 | 118.12 (10) | O3—C16—C15 | 127.50 (11) |
C25—N2—C7 | 114.33 (10) | O3—C16—C8 | 124.03 (11) |
C8—N2—C7 | 109.82 (9) | C15—C16—C8 | 108.47 (9) |
N1—C1—C2 | 114.38 (9) | C2—C17—C18 | 129.21 (11) |
N1—C1—H1A | 108.7 | C2—C17—H17A | 115.4 |
C2—C1—H1A | 108.7 | C18—C17—H17A | 115.4 |
N1—C1—H1B | 108.7 | C19—C18—C23 | 118.72 (11) |
C2—C1—H1B | 108.7 | C19—C18—C17 | 124.51 (11) |
H1A—C1—H1B | 107.6 | C23—C18—C17 | 116.77 (11) |
C17—C2—C3 | 115.55 (10) | C20—C19—C18 | 120.02 (12) |
C17—C2—C1 | 125.79 (11) | C20—C19—H19A | 120.0 |
C3—C2—C1 | 118.11 (10) | C18—C19—H19A | 120.0 |
O1—C3—C2 | 123.06 (10) | C21—C20—C19 | 120.93 (12) |
O1—C3—C4 | 122.82 (10) | C21—C20—H20A | 119.5 |
C2—C3—C4 | 114.01 (9) | C19—C20—H20A | 119.5 |
C3—C4—C6 | 115.70 (9) | O5—C21—C20 | 124.24 (11) |
C3—C4—C5 | 107.22 (9) | O5—C21—C22 | 116.47 (11) |
C6—C4—C5 | 117.65 (9) | C20—C21—C22 | 119.29 (11) |
C3—C4—C8 | 110.37 (9) | O4—C22—C23 | 125.26 (11) |
C6—C4—C8 | 104.12 (9) | O4—C22—C21 | 114.93 (11) |
C5—C4—C8 | 100.54 (9) | C23—C22—C21 | 119.82 (11) |
N1—C5—C4 | 103.58 (9) | C22—C23—C18 | 121.21 (11) |
N1—C5—H5A | 111.0 | C22—C23—H23A | 119.4 |
C4—C5—H5A | 111.0 | C18—C23—H23A | 119.4 |
N1—C5—H5B | 111.0 | O4—C24—H24A | 109.5 |
C4—C5—H5B | 111.0 | O4—C24—H24B | 109.5 |
H5A—C5—H5B | 109.0 | H24A—C24—H24B | 109.5 |
C26—C6—C4 | 115.37 (9) | O4—C24—H24C | 109.5 |
C26—C6—C7 | 116.08 (9) | H24A—C24—H24C | 109.5 |
C4—C6—C7 | 102.67 (9) | H24B—C24—H24C | 109.5 |
C26—C6—H6A | 107.4 | N2—C25—H25A | 109.5 |
C4—C6—H6A | 107.4 | N2—C25—H25B | 109.5 |
C7—C6—H6A | 107.4 | H25A—C25—H25B | 109.5 |
N2—C7—C6 | 106.40 (9) | N2—C25—H25C | 109.5 |
N2—C7—H7A | 110.4 | H25A—C25—H25C | 109.5 |
C6—C7—H7A | 110.4 | H25B—C25—H25C | 109.5 |
N2—C7—H7B | 110.4 | C31—C26—C27 | 118.73 (10) |
C6—C7—H7B | 110.4 | C31—C26—C6 | 123.71 (10) |
H7A—C7—H7B | 108.6 | C27—C26—C6 | 117.54 (10) |
N2—C8—C16 | 114.64 (9) | C28—C27—C26 | 120.67 (11) |
N2—C8—C4 | 105.38 (9) | C28—C27—H27A | 119.7 |
C16—C8—C4 | 115.57 (9) | C26—C27—H27A | 119.7 |
N2—C8—C9 | 112.43 (9) | O6—C28—C27 | 124.88 (11) |
C16—C8—C9 | 104.28 (9) | O6—C28—C29 | 114.88 (10) |
C4—C8—C9 | 104.23 (9) | C27—C28—C29 | 120.23 (10) |
O2—C9—N1 | 109.40 (9) | O7—C29—C30 | 119.90 (11) |
O2—C9—C10 | 111.68 (9) | O7—C29—C28 | 120.46 (10) |
N1—C9—C10 | 114.75 (9) | C30—C29—C28 | 119.64 (11) |
O2—C9—C8 | 109.24 (9) | C29—C30—C31 | 119.95 (11) |
N1—C9—C8 | 106.22 (9) | C29—C30—H30A | 120.0 |
C10—C9—C8 | 105.21 (9) | C31—C30—H30A | 120.0 |
C11—C10—C15 | 120.26 (11) | C26—C31—C30 | 120.76 (11) |
C11—C10—C9 | 128.52 (11) | C26—C31—H31A | 119.6 |
C15—C10—C9 | 111.22 (10) | C30—C31—H31A | 119.6 |
C10—C11—C12 | 118.26 (13) | O6—C32—H32A | 109.5 |
C10—C11—H11A | 120.9 | O6—C32—H32B | 109.5 |
C12—C11—H11A | 120.9 | H32A—C32—H32B | 109.5 |
C11—C12—C13 | 121.34 (13) | O6—C32—H32C | 109.5 |
C11—C12—H12A | 119.3 | H32A—C32—H32C | 109.5 |
C13—C12—H12A | 119.3 | H32B—C32—H32C | 109.5 |
C14—C13—C12 | 120.43 (13) | ||
C5—N1—C1—C2 | 51.33 (13) | O2—C9—C10—C15 | −122.63 (10) |
C9—N1—C1—C2 | −62.84 (13) | N1—C9—C10—C15 | 112.13 (11) |
N1—C1—C2—C17 | 144.18 (12) | C8—C9—C10—C15 | −4.23 (12) |
N1—C1—C2—C3 | −26.93 (15) | C15—C10—C11—C12 | −0.28 (19) |
C17—C2—C3—O1 | 30.82 (17) | C9—C10—C11—C12 | 178.73 (12) |
C1—C2—C3—O1 | −157.16 (11) | C10—C11—C12—C13 | −0.9 (2) |
C17—C2—C3—C4 | −145.65 (10) | C11—C12—C13—C14 | 1.3 (2) |
C1—C2—C3—C4 | 26.36 (14) | C12—C13—C14—C15 | −0.4 (2) |
O1—C3—C4—C6 | 1.84 (16) | C11—C10—C15—C14 | 1.15 (18) |
C2—C3—C4—C6 | 178.33 (9) | C9—C10—C15—C14 | −178.02 (11) |
O1—C3—C4—C5 | 135.34 (12) | C11—C10—C15—C16 | 179.93 (11) |
C2—C3—C4—C5 | −48.17 (12) | C9—C10—C15—C16 | 0.77 (13) |
O1—C3—C4—C8 | −116.04 (12) | C13—C14—C15—C10 | −0.79 (18) |
C2—C3—C4—C8 | 60.45 (12) | C13—C14—C15—C16 | −179.35 (12) |
C9—N1—C5—C4 | 47.67 (10) | C10—C15—C16—O3 | −177.64 (12) |
C1—N1—C5—C4 | −73.85 (11) | C14—C15—C16—O3 | 1.0 (2) |
C3—C4—C5—N1 | 72.33 (11) | C10—C15—C16—C8 | 3.18 (13) |
C6—C4—C5—N1 | −155.22 (9) | C14—C15—C16—C8 | −178.14 (11) |
C8—C4—C5—N1 | −43.03 (10) | N2—C8—C16—O3 | −61.39 (15) |
C3—C4—C6—C26 | 77.77 (12) | C4—C8—C16—O3 | 61.50 (15) |
C5—C4—C6—C26 | −50.77 (13) | C9—C8—C16—O3 | 175.26 (11) |
C8—C4—C6—C26 | −160.93 (9) | N2—C8—C16—C15 | 117.83 (10) |
C3—C4—C6—C7 | −154.99 (10) | C4—C8—C16—C15 | −119.28 (10) |
C5—C4—C6—C7 | 76.47 (12) | C9—C8—C16—C15 | −5.52 (11) |
C8—C4—C6—C7 | −33.69 (11) | C3—C2—C17—C18 | 171.74 (11) |
C25—N2—C7—C6 | 121.00 (11) | C1—C2—C17—C18 | 0.4 (2) |
C8—N2—C7—C6 | −14.46 (13) | C2—C17—C18—C19 | 33.3 (2) |
C26—C6—C7—N2 | 156.85 (10) | C2—C17—C18—C23 | −146.11 (13) |
C4—C6—C7—N2 | 30.06 (12) | C23—C18—C19—C20 | 1.62 (18) |
C25—N2—C8—C16 | −12.37 (14) | C17—C18—C19—C20 | −177.73 (11) |
C7—N2—C8—C16 | 121.19 (10) | C18—C19—C20—C21 | −0.68 (19) |
C25—N2—C8—C4 | −140.60 (10) | C19—C20—C21—O5 | −179.90 (12) |
C7—N2—C8—C4 | −7.03 (12) | C19—C20—C21—C22 | −0.30 (19) |
C25—N2—C8—C9 | 106.50 (12) | C24—O4—C22—C23 | −11.19 (17) |
C7—N2—C8—C9 | −119.94 (10) | C24—O4—C22—C21 | 168.71 (11) |
C3—C4—C8—N2 | 150.54 (9) | O5—C21—C22—O4 | 0.03 (16) |
C6—C4—C8—N2 | 25.76 (11) | C20—C21—C22—O4 | −179.60 (11) |
C5—C4—C8—N2 | −96.49 (9) | O5—C21—C22—C23 | 179.94 (11) |
C3—C4—C8—C16 | 22.88 (13) | C20—C21—C22—C23 | 0.30 (17) |
C6—C4—C8—C16 | −101.90 (10) | O4—C22—C23—C18 | −179.43 (11) |
C5—C4—C8—C16 | 135.85 (10) | C21—C22—C23—C18 | 0.67 (17) |
C3—C4—C8—C9 | −90.91 (10) | C19—C18—C23—C22 | −1.63 (17) |
C6—C4—C8—C9 | 144.31 (8) | C17—C18—C23—C22 | 177.77 (10) |
C5—C4—C8—C9 | 22.07 (10) | C4—C6—C26—C31 | 88.03 (13) |
C5—N1—C9—O2 | 85.36 (10) | C7—C6—C26—C31 | −32.12 (16) |
C1—N1—C9—O2 | −157.46 (9) | C4—C6—C26—C27 | −90.59 (12) |
C5—N1—C9—C10 | −148.22 (9) | C7—C6—C26—C27 | 149.25 (11) |
C1—N1—C9—C10 | −31.04 (13) | C31—C26—C27—C28 | 0.63 (17) |
C5—N1—C9—C8 | −32.44 (10) | C6—C26—C27—C28 | 179.32 (11) |
C1—N1—C9—C8 | 84.75 (11) | C32—O6—C28—C27 | 7.83 (19) |
N2—C8—C9—O2 | 1.02 (13) | C32—O6—C28—C29 | −172.71 (12) |
C16—C8—C9—O2 | 125.80 (10) | C26—C27—C28—O6 | −179.88 (11) |
C4—C8—C9—O2 | −112.59 (10) | C26—C27—C28—C29 | 0.70 (18) |
N2—C8—C9—N1 | 118.92 (10) | O6—C28—C29—O7 | −0.94 (16) |
C16—C8—C9—N1 | −116.30 (9) | C27—C28—C29—O7 | 178.54 (11) |
C4—C8—C9—N1 | 5.30 (11) | O6—C28—C29—C30 | 179.21 (11) |
N2—C8—C9—C10 | −119.01 (10) | C27—C28—C29—C30 | −1.31 (18) |
C16—C8—C9—C10 | 5.77 (11) | O7—C29—C30—C31 | −179.27 (11) |
C4—C8—C9—C10 | 127.37 (9) | C28—C29—C30—C31 | 0.59 (18) |
O2—C9—C10—C11 | 58.29 (16) | C27—C26—C31—C30 | −1.36 (18) |
N1—C9—C10—C11 | −66.94 (16) | C6—C26—C31—C30 | −179.97 (11) |
C8—C9—C10—C11 | 176.69 (12) | C29—C30—C31—C26 | 0.76 (18) |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H1O5···O2i | 0.89 (2) | 1.77 (2) | 2.6554 (14) | 173 (2) |
O7—H1O7···O4ii | 0.88 (3) | 2.13 (3) | 2.8720 (13) | 143 (2) |
O2—H1O2···N2 | 0.92 (3) | 1.91 (2) | 2.5987 (13) | 131 (2) |
C1—H1A···O7iii | 0.97 | 2.49 | 3.3771 (16) | 151 |
C13—H13A···O7iv | 0.93 | 2.57 | 3.3237 (17) | 138 |
C27—H27A···O1 | 0.93 | 2.52 | 3.0998 (15) | 121 |
C32—H32A···O3v | 0.96 | 2.40 | 3.1819 (17) | 139 |
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) x+1, y, z; (iii) x−1/2, y, −z+1/2; (iv) x−1, y, z; (v) x+1/2, −y−1/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C32H30N2O7 |
Mr | 554.58 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 100 |
a, b, c (Å) | 14.7989 (11), 15.4918 (11), 22.9079 (17) |
V (Å3) | 5251.9 (7) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.39 × 0.39 × 0.31 |
Data collection | |
Diffractometer | Bruker APEXII DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.962, 0.969 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 130228, 9672, 7897 |
Rint | 0.048 |
(sin θ/λ)max (Å−1) | 0.761 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.145, 1.09 |
No. of reflections | 9672 |
No. of parameters | 385 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.59, −0.25 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H1O5···O2i | 0.89 (2) | 1.77 (2) | 2.6554 (14) | 173 (2) |
O7—H1O7···O4ii | 0.88 (3) | 2.13 (3) | 2.8720 (13) | 143 (2) |
O2—H1O2···N2 | 0.92 (3) | 1.91 (2) | 2.5987 (13) | 131 (2) |
C1—H1A···O7iii | 0.9700 | 2.4900 | 3.3771 (16) | 151.00 |
C13—H13A···O7iv | 0.9300 | 2.5700 | 3.3237 (17) | 138.00 |
C27—H27A···O1 | 0.9300 | 2.5200 | 3.0998 (15) | 121.00 |
C32—H32A···O3v | 0.9600 | 2.4000 | 3.1819 (17) | 138.90 |
Symmetry codes: (i) −x, y−1/2, −z+1/2; (ii) x+1, y, z; (iii) x−1/2, y, −z+1/2; (iv) x−1, y, z; (v) x+1/2, −y−1/2, −z+1. |
Acknowledgements
The synthetic chemistry work was funded by Universiti Sains Malaysia (USM) under the University Research grant No. 1001/PKIMIA/8111016. HKF and MH thank the Malaysian Government and Universiti Sains Malaysia for the Research University Golden Goose grant No. 1001/PFIZIK/811012. RSK and MH also thank Universiti Sains Malaysia for post-doctoral research fellowships.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
1,3-Dipolar cycloadditions represent one of the most versatile tools for the construction of five-membered heterocycles (Padwa, 1984). A diverse array of biologically active molecules contain substituted pyrrolidine cores (O'Hagan, 2000). Pyrrolidines are important building blocks in organic synthesis, and in the past years have emerged as privileged organocatalysts (Dalko & Moisan, 2004; Seayad & List, 2005). Compounds containing the piperidine subunit act as excellent inhibitors of p38 activity and TNF–α release (Natarajan et al., 2006) and consequently, the efficient preparation of these heterocycles has received significant attention.
The molecular structure of the title compound is shown in Fig. 1. The piperidone (N1/C1–C5) ring adopts a chair conformation [Q = 0.6146 (12) Å, Θ = 145.39 (11)°, φ = 120.0 (2)° ; Cremer & Pople, 1975]. The pyrrolidine ring (N2/C4/C6–C8) adopts an envelope conformation [puckering parameters Q = 0.3365 (12) Å, φ = 84.3 (2)°]. The five membered ring of the ninhydrin system adopts an envelope conformation and its flap atom C8 deviates from the mean plane formed by other atoms, C9–C16, by 0.0702 (12) Å. The dihedral angle between the two hydroxy subsituted methoxyphenyl rings (C18–C23 and C26–C31) is 71.12 (5)°.
In the crystal packing (Fig. 2), molecules are connected by intermolecular O2—H1O5···O2, O7—H1O7···O4, C1—H1A···O7, C13—H13A···O7 and C32—H32A···O3 hydrogen bonds to form a three–dimensional network.