organic compounds
3-Phenyl-1H-pyrrolo[2,1-c][1,4]oxazin-1-one
aDepartment of Pharmaceutical Engineering, Biotechnology College, Tianjin University of Science & Technology (TUST), Tianjin 300457, People's Republic of China, bCrystal Materials Research Unit, Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand, and cPharmaceutical Research Centre, PCSIR Labs Complex, Karachi 75280, Pakistan
*Correspondence e-mail: yupeng@tust.edu.cn
The molecule of the title compound, C13H9NO2, is slightly twisted with a dihedral angle of 4.85 (9)° between the nine-membered ring system and the phenyl ring. The nine non-H atoms of the 1H-pyrrolo[2,1-c][1,4]oxazin-1-one system are coplanar [r.m.s. deviation = 0.0122 (2) Å]. In the crystal, weak intermolecular C—H⋯O interactions link molecules into chains along [10]. The crystal studied was an with a 0.48624 (9):0.51376 (9) domain ratio.
Related literature
For the biological activity and applications of pyrrolo[1,2-a]pyrazine derivatives, see: Bélanger et al. (1983); Fu et al. (2002); Micheli et al. (2008). For a related structure, see: Khan et al. (2010). For standard bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku, 2005); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536810017940/rz2449sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810017940/rz2449Isup2.hkl
A solution of α-bromo acetophenone (2.37 g, 11.91 mmol) in acetone (25 ml) was dropwise added through a dropping funnel to a slurry of 2,2,2-trichloro-1-(lH-pyrrol-2-yl)ethanone (1.69 g, 7.95 mmol), potassium carbonate (1.98 g, 14.31 mmol) and acetone (20 ml) at room temperature in a 100 ml reaction flask. The reaction mixture was refluxed for 4 h. The solid was then removed by filtration and washed with acetone. The filtrate was concentrated under reduced pressure by rotary evaporator, the residue was partitioned between water (20 ml) and ethyl acetate (40 ml) in a separatory funnel (100 ml). The organic layer was separated and the aqueous phase was washed with ethyl acetate (30 ml x 2). The combined organic layers were washed successively with water (20 ml x 3) and brine solution and dried over anhydrous MgSO4. After filtration, the solvent was removed by rotary evaporator to obtain the oily residue (1.90 g) which was purified by flash (petroleum ether:ethyl acetate, 4:1 v/v) to afford the desired compound as white solid (1.05 g, yield 62.5 %). Colourless needle-shaped single crystals of the title compound suitable for X-ray were recrystalized from ethyl acetate by slow evaporation of the solvent at room temperature after several days.
H atoms were placed in calculated positions with C—H = 0.95 Å, and were included in the
in a riding-model approximation, with Uiso(H) = 1.2 Ueq(C). The highest residual electron density peak and the deepest hole are located at 0.69 Å and 0.93 Å from atom C4. The crystal studied was an with a refined BASF ratio of 0.48624 (9)/0.51376 (9). The final was carried out with Friedel pairs merged.A series of pyrrolo[1,2-a]pyrazine compounds show potent and selective non-competitive mGluR5 antagonists properties (Micheli et al., 2008). We previously reported the synthesis and
of 3-methyl-1H-pyrrolo[2,1-c][1,4]oxazin-1-one (I) (Khan et al., 2010). The title compound (II), which was designed by changing the methyl substituent in (I) to phenyl, is a new key intermediate which can be used as a precursor for the syntheses of muscle relaxant agents (Bélanger et al., 1983) and other biological active compounds (Fu et al., 2002).The molecule of title compound (Fig. 1) is slightly twisted, the dihedral angle between this nine membered ring system and phenyl ring being 4.85 (9)° and the O1–C6–C8–C9 torsion angle 5.0 (3)°. The nine non-hydrogen atoms of the 1H-pyrrolo[2,1-c][1,4]oxazin-1-one ring system are coplanar with a r.m.s. of 0.0122 (2) Å. The bond lengths are in normal ranges (Allen et al., 1987) and comparable with the related structure (Khan et al., 2010). In the 10]. These chains are stacked along the b axis.
(Fig. 2), weak intermolecular C—H···O interactions (Table 1) link the molecules into chains along [1For the biological activity and applications of pyrrolo[1,2-a]pyrazine derivatives, see: Bélanger et al. (1983); Fu et al. (2002); Micheli et al. (2008). For a related structure, see: Khan et al. (2010). For standard bond-length data, see: Allen et al. (1987).
Data collection: CrystalClear (Rigaku, 2005); cell
CrystalClear (Rigaku, 2005); data reduction: CrystalClear (Rigaku, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C13H9NO2 | F(000) = 220 |
Mr = 211.21 | Dx = 1.434 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 1222 reflections |
a = 5.870 (1) Å | θ = 2.8–27.0° |
b = 3.8345 (7) Å | µ = 0.10 mm−1 |
c = 21.733 (4) Å | T = 113 K |
β = 91.059 (7)° | Needle, colourless |
V = 489.09 (15) Å3 | 0.22 × 0.18 × 0.08 mm |
Z = 2 |
Rigaku Saturn CCD area-detector diffractometer | 1222 independent reflections |
Radiation source: rotating anode | 1092 reflections with I > 2σ(I) |
Multilayer monochromator | Rint = 0.032 |
Detector resolution: 14.63 pixels mm-1 | θmax = 27.0°, θmin = 2.8° |
ω and φ scans | h = −7→7 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | k = −4→4 |
Tmin = 0.979, Tmax = 0.992 | l = −26→27 |
4358 measured reflections |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.031 | H-atom parameters constrained |
wR(F2) = 0.085 | w = 1/[σ2(Fo2) + (0.050P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.10 | (Δ/σ)max < 0.001 |
1222 reflections | Δρmax = 0.20 e Å−3 |
147 parameters | Δρmin = −0.19 e Å−3 |
1 restraint | Extinction correction: SHELXTL (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.037 (9) |
C13H9NO2 | V = 489.09 (15) Å3 |
Mr = 211.21 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 5.870 (1) Å | µ = 0.10 mm−1 |
b = 3.8345 (7) Å | T = 113 K |
c = 21.733 (4) Å | 0.22 × 0.18 × 0.08 mm |
β = 91.059 (7)° |
Rigaku Saturn CCD area-detector diffractometer | 1222 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | 1092 reflections with I > 2σ(I) |
Tmin = 0.979, Tmax = 0.992 | Rint = 0.032 |
4358 measured reflections |
R[F2 > 2σ(F2)] = 0.031 | 1 restraint |
wR(F2) = 0.085 | H-atom parameters constrained |
S = 1.10 | Δρmax = 0.20 e Å−3 |
1222 reflections | Δρmin = −0.19 e Å−3 |
147 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.4797 (2) | 0.4846 (4) | 0.25405 (5) | 0.0201 (4) | |
O2 | 0.7147 (2) | 0.7726 (4) | 0.31664 (6) | 0.0273 (4) | |
N1 | 0.1877 (2) | 0.3508 (4) | 0.34783 (7) | 0.0181 (4) | |
C1 | 0.0686 (3) | 0.3143 (6) | 0.40070 (8) | 0.0219 (5) | |
H1 | −0.0763 | 0.2067 | 0.4044 | 0.026* | |
C2 | 0.1959 (3) | 0.4614 (6) | 0.44782 (8) | 0.0232 (5) | |
H2 | 0.1546 | 0.4700 | 0.4899 | 0.028* | |
C3 | 0.3965 (3) | 0.5960 (6) | 0.42329 (9) | 0.0230 (5) | |
H3 | 0.5148 | 0.7140 | 0.4453 | 0.028* | |
C4 | 0.3895 (3) | 0.5244 (5) | 0.36106 (8) | 0.0186 (4) | |
C5 | 0.5406 (3) | 0.6064 (6) | 0.31182 (8) | 0.0198 (4) | |
C6 | 0.2775 (3) | 0.3039 (6) | 0.24323 (8) | 0.0177 (4) | |
C7 | 0.1330 (3) | 0.2396 (6) | 0.28844 (8) | 0.0189 (4) | |
H7 | −0.0057 | 0.1192 | 0.2802 | 0.023* | |
C8 | 0.2448 (3) | 0.1991 (6) | 0.17857 (8) | 0.0186 (4) | |
C9 | 0.4150 (3) | 0.2573 (6) | 0.13567 (8) | 0.0223 (5) | |
H9 | 0.5540 | 0.3651 | 0.1483 | 0.027* | |
C10 | 0.3819 (4) | 0.1584 (6) | 0.07468 (9) | 0.0258 (5) | |
H10 | 0.4987 | 0.1992 | 0.0459 | 0.031* | |
C11 | 0.1813 (4) | 0.0015 (6) | 0.05544 (8) | 0.0242 (5) | |
H11 | 0.1596 | −0.0651 | 0.0136 | 0.029* | |
C12 | 0.0115 (3) | −0.0580 (6) | 0.09787 (8) | 0.0248 (5) | |
H12 | −0.1273 | −0.1651 | 0.0849 | 0.030* | |
C13 | 0.0429 (3) | 0.0377 (6) | 0.15879 (8) | 0.0220 (5) | |
H13 | −0.0738 | −0.0068 | 0.1875 | 0.026* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0165 (7) | 0.0229 (8) | 0.0210 (6) | −0.0045 (6) | 0.0017 (5) | 0.0005 (7) |
O2 | 0.0190 (7) | 0.0308 (9) | 0.0321 (8) | −0.0093 (7) | −0.0014 (5) | 0.0000 (7) |
N1 | 0.0163 (8) | 0.0198 (10) | 0.0183 (8) | −0.0017 (7) | 0.0007 (6) | 0.0014 (7) |
C1 | 0.0206 (10) | 0.0251 (12) | 0.0202 (9) | 0.0008 (9) | 0.0047 (7) | 0.0043 (9) |
C2 | 0.0263 (10) | 0.0249 (12) | 0.0185 (9) | 0.0048 (10) | 0.0025 (7) | 0.0021 (9) |
C3 | 0.0233 (10) | 0.0222 (12) | 0.0234 (9) | 0.0015 (9) | −0.0033 (7) | −0.0017 (9) |
C4 | 0.0161 (9) | 0.0173 (12) | 0.0224 (9) | 0.0000 (8) | −0.0019 (7) | 0.0001 (9) |
C5 | 0.0183 (10) | 0.0170 (11) | 0.0240 (9) | 0.0002 (9) | −0.0017 (7) | 0.0007 (9) |
C6 | 0.0146 (9) | 0.0166 (11) | 0.0220 (9) | −0.0019 (8) | −0.0010 (7) | 0.0017 (8) |
C7 | 0.0172 (9) | 0.0207 (11) | 0.0187 (8) | −0.0025 (8) | −0.0012 (7) | 0.0002 (9) |
C8 | 0.0193 (9) | 0.0168 (11) | 0.0197 (9) | 0.0027 (8) | 0.0009 (7) | 0.0020 (8) |
C9 | 0.0202 (10) | 0.0237 (12) | 0.0229 (9) | 0.0017 (9) | 0.0011 (7) | 0.0015 (10) |
C10 | 0.0289 (11) | 0.0275 (13) | 0.0211 (9) | 0.0049 (10) | 0.0064 (8) | 0.0034 (9) |
C11 | 0.0310 (11) | 0.0237 (12) | 0.0178 (9) | 0.0066 (9) | −0.0020 (7) | −0.0001 (9) |
C12 | 0.0239 (10) | 0.0248 (12) | 0.0255 (10) | 0.0016 (10) | −0.0042 (7) | −0.0020 (10) |
C13 | 0.0199 (10) | 0.0243 (13) | 0.0219 (9) | 0.0000 (9) | 0.0030 (7) | 0.0003 (10) |
O1—C5 | 1.380 (2) | C6—C8 | 1.471 (2) |
O1—C6 | 1.391 (2) | C7—H7 | 0.9500 |
O2—C5 | 1.207 (2) | C8—C9 | 1.397 (2) |
N1—C1 | 1.363 (2) | C8—C13 | 1.397 (3) |
N1—C4 | 1.384 (2) | C9—C10 | 1.389 (3) |
N1—C7 | 1.391 (2) | C9—H9 | 0.9500 |
C1—C2 | 1.377 (3) | C10—C11 | 1.380 (3) |
C1—H1 | 0.9500 | C10—H10 | 0.9500 |
C2—C3 | 1.400 (3) | C11—C12 | 1.389 (3) |
C2—H2 | 0.9500 | C11—H11 | 0.9500 |
C3—C4 | 1.380 (3) | C12—C13 | 1.383 (3) |
C3—H3 | 0.9500 | C12—H12 | 0.9500 |
C4—C5 | 1.438 (2) | C13—H13 | 0.9500 |
C6—C7 | 1.333 (2) | ||
C5—O1—C6 | 121.88 (14) | C6—C7—N1 | 119.21 (18) |
C1—N1—C4 | 108.95 (15) | C6—C7—H7 | 120.4 |
C1—N1—C7 | 129.57 (17) | N1—C7—H7 | 120.4 |
C4—N1—C7 | 121.48 (15) | C9—C8—C13 | 118.58 (17) |
N1—C1—C2 | 107.74 (17) | C9—C8—C6 | 120.77 (17) |
N1—C1—H1 | 126.1 | C13—C8—C6 | 120.65 (16) |
C2—C1—H1 | 126.1 | C10—C9—C8 | 120.26 (19) |
C1—C2—C3 | 108.45 (17) | C10—C9—H9 | 119.9 |
C1—C2—H2 | 125.8 | C8—C9—H9 | 119.9 |
C3—C2—H2 | 125.8 | C11—C10—C9 | 120.78 (17) |
C4—C3—C2 | 106.83 (18) | C11—C10—H10 | 119.6 |
C4—C3—H3 | 126.6 | C9—C10—H10 | 119.6 |
C2—C3—H3 | 126.6 | C10—C11—C12 | 119.29 (18) |
C3—C4—N1 | 108.03 (16) | C10—C11—H11 | 120.4 |
C3—C4—C5 | 132.71 (19) | C12—C11—H11 | 120.4 |
N1—C4—C5 | 119.21 (16) | C13—C12—C11 | 120.47 (19) |
O2—C5—O1 | 117.52 (16) | C13—C12—H12 | 119.8 |
O2—C5—C4 | 125.73 (18) | C11—C12—H12 | 119.8 |
O1—C5—C4 | 116.75 (16) | C12—C13—C8 | 120.62 (17) |
C7—C6—O1 | 121.35 (17) | C12—C13—H13 | 119.7 |
C7—C6—C8 | 125.48 (18) | C8—C13—H13 | 119.7 |
O1—C6—C8 | 113.17 (15) | ||
C4—N1—C1—C2 | −0.7 (2) | C5—O1—C6—C8 | 179.70 (17) |
C7—N1—C1—C2 | 178.7 (2) | O1—C6—C7—N1 | −1.1 (3) |
N1—C1—C2—C3 | 0.9 (2) | C8—C6—C7—N1 | 179.16 (18) |
C1—C2—C3—C4 | −0.7 (2) | C1—N1—C7—C6 | −179.8 (2) |
C2—C3—C4—N1 | 0.3 (2) | C4—N1—C7—C6 | −0.5 (3) |
C2—C3—C4—C5 | 177.6 (2) | C7—C6—C8—C9 | −175.2 (2) |
C1—N1—C4—C3 | 0.2 (2) | O1—C6—C8—C9 | 5.0 (3) |
C7—N1—C4—C3 | −179.20 (19) | C7—C6—C8—C13 | 4.5 (3) |
C1—N1—C4—C5 | −177.49 (18) | O1—C6—C8—C13 | −175.29 (19) |
C7—N1—C4—C5 | 3.1 (3) | C13—C8—C9—C10 | 0.5 (3) |
C6—O1—C5—O2 | −177.16 (18) | C6—C8—C9—C10 | −179.8 (2) |
C6—O1—C5—C4 | 2.6 (3) | C8—C9—C10—C11 | 0.0 (3) |
C3—C4—C5—O2 | −1.3 (4) | C9—C10—C11—C12 | −0.1 (4) |
N1—C4—C5—O2 | 175.7 (2) | C10—C11—C12—C13 | −0.2 (4) |
C3—C4—C5—O1 | 178.9 (2) | C11—C12—C13—C8 | 0.7 (4) |
N1—C4—C5—O1 | −4.0 (3) | C9—C8—C13—C12 | −0.8 (3) |
C5—O1—C6—C7 | −0.1 (3) | C6—C8—C13—C12 | 179.4 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H7···O2i | 0.95 | 2.27 | 3.109 (2) | 147 |
Symmetry code: (i) x−1, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C13H9NO2 |
Mr | 211.21 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 113 |
a, b, c (Å) | 5.870 (1), 3.8345 (7), 21.733 (4) |
β (°) | 91.059 (7) |
V (Å3) | 489.09 (15) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.22 × 0.18 × 0.08 |
Data collection | |
Diffractometer | Rigaku Saturn CCD area-detector |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2005) |
Tmin, Tmax | 0.979, 0.992 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 4358, 1222, 1092 |
Rint | 0.032 |
(sin θ/λ)max (Å−1) | 0.639 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.031, 0.085, 1.10 |
No. of reflections | 1222 |
No. of parameters | 147 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.20, −0.19 |
Computer programs: CrystalClear (Rigaku, 2005), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H7···O2i | 0.95 | 2.27 | 3.109 (2) | 147 |
Symmetry code: (i) x−1, y−1, z. |
Acknowledgements
STK acknowledges funding from the Industrial Linkage Programme of Pakistan Council of Scientific and Industrial Research (PCSIR) Laboratories, Pakistan. He also thanks Dr Song Haibin of the State Key Laboratory of Elemento-Organic Chemistry, Nankai University, for the X-ray data collection. PY is grateful to Tianjin University of Science & Technology for a research grant (No. 2009 0431).
References
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A series of pyrrolo[1,2-a]pyrazine compounds show potent and selective non-competitive mGluR5 antagonists properties (Micheli et al., 2008). We previously reported the synthesis and crystal structure of 3-methyl-1H-pyrrolo[2,1-c][1,4]oxazin-1-one (I) (Khan et al., 2010). The title compound (II), which was designed by changing the methyl substituent in (I) to phenyl, is a new key intermediate which can be used as a precursor for the syntheses of muscle relaxant agents (Bélanger et al., 1983) and other biological active compounds (Fu et al., 2002).
The molecule of title compound (Fig. 1) is slightly twisted, the dihedral angle between this nine membered ring system and phenyl ring being 4.85 (9)° and the O1–C6–C8–C9 torsion angle 5.0 (3)°. The nine non-hydrogen atoms of the 1H-pyrrolo[2,1-c][1,4]oxazin-1-one ring system are coplanar with a r.m.s. of 0.0122 (2) Å. The bond lengths are in normal ranges (Allen et al., 1987) and comparable with the related structure (Khan et al., 2010). In the crystal structure (Fig. 2), weak intermolecular C—H···O interactions (Table 1) link the molecules into chains along [110]. These chains are stacked along the b axis.