organic compounds
Bis(2,4,6-triamino-1,3,5-triazin-1-ium) pyrazine-2,3-dicarboxylate tetrahydrate: a synchrotron radiation study
aDepartment of Chemistry, School of Sciences, Ferdowsi University of Mashhad, Mashhad, Iran, and bInstituto de Ciencia de Materiales de Aragón, CSIC-Universidad de Zaragoza, C/ Pedro Cerbuna 12, E-50009 Zaragoza, Spain
*Correspondence e-mail: heshtiagh@ferdowsi.um.ac.ir
The title compound, 2C3H7N6+·C6H2N2O42−·4H2O or (tataH)2(pzdc)·4H2O, was synthesised by a reaction between pyrazine-2,3-dicarboxylic acid (H2pzdc) as a proton donor and 2,4,6-triamino-1,3,5-triazin (tata) as a proton acceptor. In the an extensive series of O—H⋯O, O—H⋯N, N—H⋯O and N—H⋯N hydrogen bonds generates a three-dimensional framework with the hydrogen bonding involving most donor and acceptor centers. π–π stacking interactions are also observed between adjacent triazine rings, with centroid–centroid distances of 3.4994 (8) and 3.5922 (7) Å.
Related literature
For related structures, see Xu et al. (1999); Wang et al. (2008); Liu et al. (2008); Moghimi et al. (2007); Smith et al. (2006a,b); Zafar et al. (2000).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: MXCUBE (Gabadinho & McSweeney, 2010); cell HKL-2000 (Otwinowski & Minor, 1997); data reduction: HKL-2000; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
https://doi.org/10.1107/S1600536810017290/sj2786sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810017290/sj2786Isup2.hkl
By refluxing 0.118 mmol (0.02 g) H2pzdc and 0.237 mmol (0.03 g) tata in 15 ml water for 6 h at 70 C°, a colorless solution was obtained. This solution gave colorless needle-like crystals of the title compound after slow evaporation of the solvent at RT.
The H atoms of the ligands were treated as riding with distances 0.86 (N—H), 0.93 (C—H), and Uiso(H) = 1.2 Ueq(C). The H atoms of the water molecules were located from difference maps and refined isotropically.
In recent years, proton transfer from appropriate H-donors to H-acceptors has emerged as a method for preparing self-assembling systems (Zafar et al., 2000). In such systems there are a variety of non-covalent interactions such as H-bonding and aromatic π···π stacking (Moghimi et al., 2007). There have been several attempts to prepare proton transfer compounds involving and For example ion pairs have been reported between H2pzdc and various organic bases such as 8-hydroxy quinoline (Smith et al., 2006a) and guanidine (Smith et al., 2006b). In this work, we report a new proton transfer compound obtained from H2pzdc as a proton donor and tata as an acceptor. The molecular structure of the title compound is shown in Fig. 1. The structure of this compound contains two monocationic (tataH)+, one (pzdc)2- species and four water molecules.
In the π···π interactions between adjacent triazine rings with centroid···centroid distances of 3.4994 (8) and 3.5922 (7)Å. Extensive H-bonding interactions also occur with H···A distances ranging from 1.86 to 2.47Å. These together with the π-π stacking, connect the different components giving rise the final three-dimensional supramolecular structure (Fig. 2).
there are severalFor related structures, see Xu et al. (1999); Wang et al. (2008); Liu et al. (2008); Moghimi et al. (2007); Smith et al. (2006a,b); Zafar et al. (2000)
Data collection: MXCUBE (Gabadinho & McSweeney, 2010); cell
HKL-2000 (Otwinowski & Minor, 1997); data reduction: HKL-2000 (Otwinowski & Minor, 1997); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).Fig. 1. The asymmetric unit of the title compound with ellipsoids drawn at the 80% probability level. | |
Fig. 2. Crystal packing of 1 with hydrogen bonds drawn as dashed lines. |
2C3H7N6+·C6H2N2O42−·4H2O | Z = 2 |
Mr = 492.45 | F(000) = 516 |
Triclinic, P1 | Dx = 1.623 Mg m−3 |
Hall symbol: -P 1 | Synchrotron radiation, λ = 0.73800 Å |
a = 7.0200 (14) Å | Cell parameters from 130 reflections |
b = 9.763 (2) Å | θ = 2.4–26.4° |
c = 15.397 (3) Å | µ = 0.14 mm−1 |
α = 101.06 (3)° | T = 100 K |
β = 99.82 (3)° | Needle, colourless |
γ = 96.98 (3)° | 0.15 × 0.04 × 0.03 mm |
V = 1007.4 (4) Å3 |
Huber single-axis diffractometer | 4314 reflections with I > 2σ(I) |
Radiation source: synchrotron, ESRF-CRG BM16 | Rint = 0.086 |
Si 111 monochromator | θmax = 29.1°, θmin = 3.5° |
Detector resolution: 9.6 pixels mm-1 | h = −9→9 |
CCD rotation images, thick slices scans | k = −12→12 |
34176 measured reflections | l = −20→20 |
4609 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.117 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0613P)2 + 0.6264P] where P = (Fo2 + 2Fc2)/3 |
4609 reflections | (Δ/σ)max = 0.007 |
339 parameters | Δρmax = 0.36 e Å−3 |
0 restraints | Δρmin = −0.39 e Å−3 |
2C3H7N6+·C6H2N2O42−·4H2O | γ = 96.98 (3)° |
Mr = 492.45 | V = 1007.4 (4) Å3 |
Triclinic, P1 | Z = 2 |
a = 7.0200 (14) Å | Synchrotron radiation, λ = 0.73800 Å |
b = 9.763 (2) Å | µ = 0.14 mm−1 |
c = 15.397 (3) Å | T = 100 K |
α = 101.06 (3)° | 0.15 × 0.04 × 0.03 mm |
β = 99.82 (3)° |
Huber single-axis diffractometer | 4314 reflections with I > 2σ(I) |
34176 measured reflections | Rint = 0.086 |
4609 independent reflections |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.117 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.07 | Δρmax = 0.36 e Å−3 |
4609 reflections | Δρmin = −0.39 e Å−3 |
339 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.08476 (18) | 0.61767 (13) | 0.86568 (7) | 0.0064 (2) | |
C2 | 0.16442 (17) | 0.76548 (13) | 0.92207 (8) | 0.0062 (2) | |
C3 | 0.32806 (19) | 0.89895 (14) | 1.05809 (8) | 0.0108 (2) | |
H3 | 0.3999 | 0.9071 | 1.1160 | 0.013* | |
C4 | 0.28663 (19) | 1.02060 (14) | 1.02974 (8) | 0.0104 (2) | |
H4 | 0.3310 | 1.1079 | 1.0693 | 0.012* | |
C5 | 0.12373 (17) | 0.88757 (13) | 0.89268 (8) | 0.0071 (2) | |
C6 | 0.00697 (19) | 0.87874 (14) | 0.79864 (8) | 0.0090 (2) | |
C7 | 0.14712 (17) | 0.41260 (13) | 0.60348 (8) | 0.0060 (2) | |
C8 | 0.26659 (17) | 0.22077 (13) | 0.65562 (8) | 0.0062 (2) | |
C9 | 0.16042 (17) | 0.20889 (13) | 0.50575 (8) | 0.0062 (2) | |
C10 | −0.21253 (17) | 0.27644 (13) | 0.69392 (8) | 0.0062 (2) | |
C11 | −0.32874 (17) | 0.22388 (13) | 0.54233 (8) | 0.0065 (2) | |
C12 | −0.35228 (17) | 0.44240 (13) | 0.62008 (8) | 0.0058 (2) | |
N1 | 0.26800 (16) | 0.77076 (12) | 1.00488 (7) | 0.0090 (2) | |
N2 | 0.18487 (16) | 1.01601 (11) | 0.94733 (7) | 0.0090 (2) | |
N3 | 0.22544 (15) | 0.35575 (11) | 0.67361 (6) | 0.0062 (2) | |
H3A | 0.2485 | 0.4042 | 0.7282 | 0.007* | |
N4 | 0.23486 (15) | 0.14484 (11) | 0.57220 (7) | 0.0065 (2) | |
N5 | 0.11417 (15) | 0.34110 (11) | 0.51846 (7) | 0.0066 (2) | |
N6 | 0.10542 (16) | 0.54193 (11) | 0.62315 (7) | 0.0083 (2) | |
H6A | 0.0564 | 0.5807 | 0.5806 | 0.010* | |
H6B | 0.1273 | 0.5874 | 0.6785 | 0.010* | |
N7 | 0.34237 (16) | 0.17081 (12) | 0.72576 (7) | 0.0097 (2) | |
H7A | 0.3722 | 0.0870 | 0.7176 | 0.012* | |
H7B | 0.3617 | 0.2222 | 0.7795 | 0.012* | |
N8 | 0.13301 (16) | 0.13572 (11) | 0.42175 (7) | 0.0093 (2) | |
H8A | 0.1619 | 0.0518 | 0.4112 | 0.011* | |
H8B | 0.0863 | 0.1720 | 0.3776 | 0.011* | |
N9 | −0.24368 (15) | 0.18109 (11) | 0.61670 (7) | 0.0071 (2) | |
N10 | −0.38609 (15) | 0.35169 (11) | 0.54089 (7) | 0.0065 (2) | |
N11 | −0.26557 (15) | 0.40727 (11) | 0.69764 (7) | 0.0068 (2) | |
H11 | −0.2446 | 0.4672 | 0.7484 | 0.008* | |
N12 | −0.12818 (16) | 0.24938 (11) | 0.77090 (7) | 0.0090 (2) | |
H12A | −0.0920 | 0.1685 | 0.7718 | 0.011* | |
H12B | −0.1094 | 0.3126 | 0.8201 | 0.011* | |
N13 | −0.35804 (16) | 0.13295 (11) | 0.46429 (7) | 0.0098 (2) | |
H13A | −0.3238 | 0.0509 | 0.4620 | 0.012* | |
H13B | −0.4114 | 0.1557 | 0.4156 | 0.012* | |
N14 | −0.40337 (16) | 0.56927 (11) | 0.62636 (7) | 0.0082 (2) | |
H14A | −0.4592 | 0.5939 | 0.5788 | 0.010* | |
H14B | −0.3808 | 0.6272 | 0.6780 | 0.010* | |
O1 | −0.08939 (13) | 0.57080 (10) | 0.86815 (6) | 0.0115 (2) | |
O2 | 0.19694 (13) | 0.55284 (10) | 0.82467 (6) | 0.00925 (19) | |
O3 | 0.00778 (18) | 0.77035 (11) | 0.74052 (6) | 0.0206 (3) | |
O4 | −0.08449 (14) | 0.97813 (10) | 0.78707 (6) | 0.0132 (2) | |
O1W | 0.56057 (15) | 0.67742 (10) | 0.81619 (6) | 0.0126 (2) | |
O2W | −0.48261 (15) | 0.90431 (11) | 0.72480 (6) | 0.0137 (2) | |
O3W | 0.15750 (16) | 1.31613 (11) | 0.94758 (7) | 0.0163 (2) | |
O4W | 0.49780 (15) | 0.38403 (11) | 0.88426 (6) | 0.0142 (2) | |
H1WA | 0.454 (4) | 0.635 (3) | 0.8298 (16) | 0.033 (6)* | |
H1WB | 0.665 (4) | 0.644 (3) | 0.8469 (18) | 0.047 (7)* | |
H2WA | −0.503 (4) | 0.845 (3) | 0.7578 (19) | 0.051 (8)* | |
H2WB | −0.348 (4) | 0.933 (3) | 0.7402 (19) | 0.054 (8)* | |
H3WA | 0.151 (4) | 1.213 (3) | 0.9435 (17) | 0.042 (6)* | |
H3WB | 0.144 (3) | 1.353 (3) | 1.0051 (17) | 0.037 (6)* | |
H4WA | 0.390 (4) | 0.379 (3) | 0.9119 (18) | 0.046 (7)* | |
H4WB | 0.589 (4) | 0.362 (3) | 0.9250 (18) | 0.043 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0111 (5) | 0.0052 (5) | 0.0026 (5) | 0.0015 (4) | −0.0003 (4) | 0.0015 (4) |
C2 | 0.0071 (5) | 0.0074 (6) | 0.0038 (5) | 0.0015 (4) | 0.0012 (4) | 0.0002 (4) |
C3 | 0.0126 (6) | 0.0121 (6) | 0.0051 (5) | 0.0011 (5) | −0.0011 (4) | −0.0011 (4) |
C4 | 0.0122 (5) | 0.0086 (6) | 0.0070 (5) | −0.0006 (5) | 0.0002 (4) | −0.0036 (4) |
C5 | 0.0086 (5) | 0.0073 (6) | 0.0051 (5) | 0.0017 (4) | 0.0016 (4) | −0.0001 (4) |
C6 | 0.0142 (6) | 0.0076 (6) | 0.0055 (5) | 0.0032 (5) | 0.0008 (4) | 0.0018 (4) |
C7 | 0.0058 (5) | 0.0065 (6) | 0.0055 (5) | 0.0009 (4) | 0.0013 (4) | 0.0012 (4) |
C8 | 0.0062 (5) | 0.0064 (6) | 0.0063 (5) | 0.0004 (4) | 0.0018 (4) | 0.0014 (4) |
C9 | 0.0067 (5) | 0.0057 (6) | 0.0061 (5) | 0.0007 (4) | 0.0016 (4) | 0.0014 (4) |
C10 | 0.0061 (5) | 0.0053 (6) | 0.0073 (5) | −0.0001 (4) | 0.0017 (4) | 0.0022 (4) |
C11 | 0.0065 (5) | 0.0060 (6) | 0.0067 (5) | 0.0007 (4) | 0.0009 (4) | 0.0012 (4) |
C12 | 0.0058 (5) | 0.0053 (6) | 0.0060 (5) | −0.0005 (4) | 0.0012 (4) | 0.0014 (4) |
N1 | 0.0113 (5) | 0.0098 (5) | 0.0046 (4) | 0.0020 (4) | −0.0007 (4) | 0.0004 (4) |
N2 | 0.0118 (5) | 0.0066 (5) | 0.0077 (5) | 0.0009 (4) | 0.0020 (4) | −0.0007 (4) |
N3 | 0.0106 (5) | 0.0044 (5) | 0.0027 (4) | 0.0013 (4) | 0.0004 (3) | −0.0009 (3) |
N4 | 0.0102 (5) | 0.0047 (5) | 0.0047 (4) | 0.0015 (4) | 0.0009 (4) | 0.0012 (4) |
N5 | 0.0102 (5) | 0.0054 (5) | 0.0043 (4) | 0.0026 (4) | 0.0013 (3) | 0.0007 (4) |
N6 | 0.0148 (5) | 0.0060 (5) | 0.0042 (4) | 0.0048 (4) | 0.0012 (4) | 0.0001 (4) |
N7 | 0.0171 (5) | 0.0074 (5) | 0.0045 (4) | 0.0045 (4) | 0.0000 (4) | 0.0011 (4) |
N8 | 0.0165 (5) | 0.0070 (5) | 0.0042 (5) | 0.0052 (4) | −0.0001 (4) | 0.0002 (4) |
N9 | 0.0097 (5) | 0.0060 (5) | 0.0050 (5) | 0.0021 (4) | −0.0001 (4) | 0.0004 (4) |
N10 | 0.0095 (5) | 0.0047 (5) | 0.0047 (4) | 0.0015 (4) | 0.0000 (3) | 0.0008 (4) |
N11 | 0.0112 (5) | 0.0046 (5) | 0.0034 (4) | 0.0014 (4) | −0.0002 (4) | −0.0007 (3) |
N12 | 0.0141 (5) | 0.0067 (5) | 0.0050 (5) | 0.0025 (4) | −0.0011 (4) | 0.0009 (4) |
N13 | 0.0169 (5) | 0.0068 (5) | 0.0049 (5) | 0.0055 (4) | −0.0013 (4) | −0.0003 (4) |
N14 | 0.0139 (5) | 0.0050 (5) | 0.0050 (4) | 0.0030 (4) | 0.0001 (4) | −0.0001 (4) |
O1 | 0.0109 (4) | 0.0108 (5) | 0.0097 (4) | −0.0016 (3) | 0.0017 (3) | −0.0026 (3) |
O2 | 0.0132 (4) | 0.0073 (4) | 0.0069 (4) | 0.0035 (3) | 0.0018 (3) | −0.0003 (3) |
O3 | 0.0402 (6) | 0.0143 (5) | 0.0055 (4) | 0.0160 (5) | −0.0039 (4) | −0.0020 (4) |
O4 | 0.0189 (5) | 0.0086 (5) | 0.0116 (4) | 0.0065 (4) | −0.0011 (4) | 0.0023 (3) |
O1W | 0.0148 (5) | 0.0107 (5) | 0.0116 (4) | 0.0004 (4) | 0.0025 (3) | 0.0020 (3) |
O2W | 0.0181 (5) | 0.0127 (5) | 0.0093 (4) | 0.0024 (4) | −0.0007 (4) | 0.0034 (4) |
O3W | 0.0225 (5) | 0.0155 (5) | 0.0119 (5) | 0.0038 (4) | 0.0052 (4) | 0.0040 (4) |
O4W | 0.0160 (5) | 0.0172 (5) | 0.0102 (4) | 0.0060 (4) | 0.0013 (4) | 0.0038 (4) |
C1—O2 | 1.2477 (15) | C11—N9 | 1.3613 (15) |
C1—O1 | 1.2618 (16) | C11—N10 | 1.3599 (15) |
C1—C2 | 1.5187 (17) | C12—N14 | 1.3214 (16) |
C2—N1 | 1.3441 (15) | C12—N10 | 1.3278 (15) |
C2—C5 | 1.3975 (17) | C12—N11 | 1.3691 (15) |
C3—N1 | 1.3325 (17) | N3—H3A | 0.8600 |
C3—C4 | 1.3876 (19) | N6—H6A | 0.8600 |
C3—H3 | 0.9300 | N6—H6B | 0.8600 |
C4—N2 | 1.3354 (16) | N7—H7A | 0.8600 |
C4—H4 | 0.9300 | N7—H7B | 0.8600 |
C5—N2 | 1.3438 (16) | N8—H8A | 0.8600 |
C5—C6 | 1.5186 (17) | N8—H8B | 0.8600 |
C6—O3 | 1.2491 (16) | N11—H11 | 0.8600 |
C6—O4 | 1.2507 (16) | N12—H12A | 0.8600 |
C7—N6 | 1.3210 (16) | N12—H12B | 0.8600 |
C7—N5 | 1.3271 (15) | N13—H13A | 0.8600 |
C7—N3 | 1.3703 (15) | N13—H13B | 0.8600 |
C8—N7 | 1.3253 (16) | N14—H14A | 0.8600 |
C8—N4 | 1.3213 (16) | N14—H14B | 0.8600 |
C8—N3 | 1.3699 (16) | O1W—H1WA | 0.89 (3) |
C9—N8 | 1.3217 (16) | O1W—H1WB | 0.93 (3) |
C9—N4 | 1.3615 (15) | O2W—H2WA | 0.85 (3) |
C9—N5 | 1.3551 (16) | O2W—H2WB | 0.93 (3) |
C10—N12 | 1.3205 (16) | O3W—H3WA | 0.99 (3) |
C10—N9 | 1.3286 (16) | O3W—H3WB | 0.92 (3) |
C10—N11 | 1.3669 (15) | O4W—H4WA | 0.93 (3) |
C11—N13 | 1.3176 (16) | O4W—H4WB | 0.89 (3) |
O2—C1—O1 | 126.43 (11) | N10—C12—N11 | 121.27 (11) |
O2—C1—C2 | 118.10 (11) | C3—N1—C2 | 116.34 (11) |
O1—C1—C2 | 115.41 (11) | C4—N2—C5 | 116.88 (11) |
N1—C2—C5 | 122.02 (11) | C7—N3—C8 | 119.18 (10) |
N1—C2—C1 | 115.11 (11) | C7—N3—H3A | 120.4 |
C5—C2—C1 | 122.77 (10) | C8—N3—H3A | 120.4 |
N1—C3—C4 | 122.00 (11) | C8—N4—C9 | 116.13 (11) |
N1—C3—H3 | 119.0 | C7—N5—C9 | 115.98 (11) |
C4—C3—H3 | 119.0 | C7—N6—H6A | 120.0 |
N2—C4—C3 | 121.90 (12) | C7—N6—H6B | 120.0 |
N2—C4—H4 | 119.0 | H6A—N6—H6B | 120.0 |
C3—C4—H4 | 119.0 | C8—N7—H7A | 120.0 |
N2—C5—C2 | 120.86 (11) | C8—N7—H7B | 120.0 |
N2—C5—C6 | 118.16 (11) | H7A—N7—H7B | 120.0 |
C2—C5—C6 | 120.98 (11) | C9—N8—H8A | 120.0 |
O3—C6—O4 | 126.16 (12) | C9—N8—H8B | 120.0 |
O3—C6—C5 | 116.43 (11) | H8A—N8—H8B | 120.0 |
O4—C6—C5 | 117.39 (11) | C10—N9—C11 | 115.33 (11) |
N6—C7—N5 | 120.70 (11) | C12—N10—C11 | 115.81 (10) |
N6—C7—N3 | 117.75 (11) | C12—N11—C10 | 119.65 (10) |
N5—C7—N3 | 121.55 (11) | C12—N11—H11 | 120.2 |
N7—C8—N4 | 121.63 (11) | C10—N11—H11 | 120.2 |
N7—C8—N3 | 116.81 (11) | C10—N12—H12A | 120.0 |
N4—C8—N3 | 121.55 (11) | C10—N12—H12B | 120.0 |
N8—C9—N4 | 116.83 (11) | H12A—N12—H12B | 120.0 |
N8—C9—N5 | 117.57 (11) | C11—N13—H13A | 120.0 |
N4—C9—N5 | 125.60 (11) | C11—N13—H13B | 120.0 |
N12—C10—N9 | 121.52 (11) | H13A—N13—H13B | 120.0 |
N12—C10—N11 | 116.74 (11) | C12—N14—H14A | 120.0 |
N9—C10—N11 | 121.74 (11) | C12—N14—H14B | 120.0 |
N13—C11—N9 | 116.94 (11) | H14A—N14—H14B | 120.0 |
N13—C11—N10 | 116.87 (11) | H1WA—O1W—H1WB | 105 (2) |
N9—C11—N10 | 126.20 (11) | H2WA—O2W—H2WB | 103 (2) |
N14—C12—N10 | 120.75 (11) | H3WA—O3W—H3WB | 105 (2) |
N14—C12—N11 | 117.99 (11) | H4WA—O4W—H4WB | 101 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3A···O2 | 0.86 | 1.98 | 2.7726 (16) | 153 |
N6—H6A···N5i | 0.86 | 2.10 | 2.9449 (17) | 169 |
N6—H6B···O3 | 0.86 | 2.19 | 2.8206 (17) | 130 |
N6—H6B···O2 | 0.86 | 2.32 | 3.0378 (15) | 141 |
N7—H7A···O2Wii | 0.86 | 2.17 | 3.0080 (16) | 164 |
N7—H7B···O4W | 0.86 | 2.04 | 2.8407 (19) | 156 |
N8—H8A···N9iii | 0.86 | 2.39 | 3.2495 (17) | 180 |
N8—H8B···O3i | 0.86 | 2.03 | 2.8842 (16) | 170 |
N11—H11···O1 | 0.86 | 1.98 | 2.7883 (17) | 155 |
N12—H12A···O4iv | 0.86 | 1.92 | 2.7557 (15) | 162 |
N12—H12B···O3Wiv | 0.86 | 2.46 | 2.9981 (18) | 121 |
N12—H12B···O1 | 0.86 | 2.47 | 3.1643 (17) | 139 |
N13—H13A···N4iii | 0.86 | 2.08 | 2.9275 (16) | 167 |
N13—H13B···O2Wv | 0.86 | 2.10 | 2.8713 (16) | 148 |
N14—H14B···O1Wvi | 0.86 | 2.21 | 2.9756 (16) | 148 |
O1W—H1WA···O2 | 0.89 (3) | 1.87 (2) | 2.7263 (16) | 163 (2) |
O1W—H1WB···O1vii | 0.93 (3) | 1.95 (3) | 2.8342 (16) | 159 (2) |
O2W—H2WA···O1Wvi | 0.85 (3) | 2.07 (3) | 2.8623 (16) | 154 (3) |
O2W—H2WB···O4 | 0.93 (3) | 1.83 (3) | 2.7533 (17) | 171 (3) |
O3W—H3WA···N2 | 0.99 (3) | 1.97 (3) | 2.9589 (16) | 170 (2) |
O3W—H3WB···O1viii | 0.92 (3) | 2.07 (3) | 2.9810 (15) | 176 (2) |
O4W—H4WA···O3Wiv | 0.93 (3) | 1.88 (3) | 2.7846 (17) | 164 (2) |
O4W—H4WB···N1ix | 0.89 (3) | 2.08 (3) | 2.9219 (17) | 156 (2) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x+1, y−1, z; (iii) −x, −y, −z+1; (iv) x, y−1, z; (v) −x−1, −y+1, −z+1; (vi) x−1, y, z; (vii) x+1, y, z; (viii) −x, −y+2, −z+2; (ix) −x+1, −y+1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | 2C3H7N6+·C6H2N2O42−·4H2O |
Mr | 492.45 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 7.0200 (14), 9.763 (2), 15.397 (3) |
α, β, γ (°) | 101.06 (3), 99.82 (3), 96.98 (3) |
V (Å3) | 1007.4 (4) |
Z | 2 |
Radiation type | Synchrotron, λ = 0.73800 Å |
µ (mm−1) | 0.14 |
Crystal size (mm) | 0.15 × 0.04 × 0.03 |
Data collection | |
Diffractometer | Huber single-axis diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 34176, 4609, 4314 |
Rint | 0.086 |
(sin θ/λ)max (Å−1) | 0.658 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.117, 1.07 |
No. of reflections | 4609 |
No. of parameters | 339 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.36, −0.39 |
Computer programs: MXCUBE (Gabadinho & McSweeney, 2010), HKL-2000 (Otwinowski & Minor, 1997), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997), WinGX (Farrugia, 1999).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3A···O2 | 0.86 | 1.98 | 2.7726 (16) | 152.5 |
N6—H6A···N5i | 0.86 | 2.10 | 2.9449 (17) | 169.2 |
N6—H6B···O3 | 0.86 | 2.19 | 2.8206 (17) | 130.1 |
N6—H6B···O2 | 0.86 | 2.32 | 3.0378 (15) | 141.3 |
N7—H7A···O2Wii | 0.86 | 2.17 | 3.0080 (16) | 164.3 |
N7—H7B···O4W | 0.86 | 2.04 | 2.8407 (19) | 155.6 |
N8—H8A···N9iii | 0.86 | 2.39 | 3.2495 (17) | 179.5 |
N8—H8B···O3i | 0.86 | 2.03 | 2.8842 (16) | 169.9 |
N11—H11···O1 | 0.86 | 1.98 | 2.7883 (17) | 155.1 |
N12—H12A···O4iv | 0.86 | 1.92 | 2.7557 (15) | 162.4 |
N12—H12B···O3Wiv | 0.86 | 2.46 | 2.9981 (18) | 121.0 |
N12—H12B···O1 | 0.86 | 2.47 | 3.1643 (17) | 138.8 |
N13—H13A···N4iii | 0.86 | 2.08 | 2.9275 (16) | 167.4 |
N13—H13B···O2Wv | 0.86 | 2.10 | 2.8713 (16) | 148.2 |
N14—H14B···O1Wvi | 0.86 | 2.21 | 2.9756 (16) | 148.2 |
O1W—H1WA···O2 | 0.89 (3) | 1.87 (2) | 2.7263 (16) | 163 (2) |
O1W—H1WB···O1vii | 0.93 (3) | 1.95 (3) | 2.8342 (16) | 159 (2) |
O2W—H2WA···O1Wvi | 0.85 (3) | 2.07 (3) | 2.8623 (16) | 154 (3) |
O2W—H2WB···O4 | 0.93 (3) | 1.83 (3) | 2.7533 (17) | 171 (3) |
O3W—H3WA···N2 | 0.99 (3) | 1.97 (3) | 2.9589 (16) | 170 (2) |
O3W—H3WB···O1viii | 0.92 (3) | 2.07 (3) | 2.9810 (15) | 176 (2) |
O4W—H4WA···O3Wiv | 0.93 (3) | 1.88 (3) | 2.7846 (17) | 164 (2) |
O4W—H4WB···N1ix | 0.89 (3) | 2.08 (3) | 2.9219 (17) | 156 (2) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) x+1, y−1, z; (iii) −x, −y, −z+1; (iv) x, y−1, z; (v) −x−1, −y+1, −z+1; (vi) x−1, y, z; (vii) x+1, y, z; (viii) −x, −y+2, −z+2; (ix) −x+1, −y+1, −z+2. |
Acknowledgements
The financial support of Ferdowsi University of Mashhad is gratefully acknowledged.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In recent years, proton transfer from appropriate H-donors to H-acceptors has emerged as a method for preparing self-assembling systems (Zafar et al., 2000). In such systems there are a variety of non-covalent interactions such as H-bonding and aromatic π···π stacking (Moghimi et al., 2007). There have been several attempts to prepare proton transfer compounds involving carboxylic acids and amines. For example ion pairs have been reported between H2pzdc and various organic bases such as 8-hydroxy quinoline (Smith et al., 2006a) and guanidine (Smith et al., 2006b). In this work, we report a new proton transfer compound obtained from H2pzdc as a proton donor and tata as an acceptor. The molecular structure of the title compound is shown in Fig. 1. The structure of this compound contains two monocationic (tataH)+, one (pzdc)2- species and four water molecules.
In the crystal structure, there are several π···π interactions between adjacent triazine rings with centroid···centroid distances of 3.4994 (8) and 3.5922 (7)Å. Extensive H-bonding interactions also occur with H···A distances ranging from 1.86 to 2.47Å. These together with the π-π stacking, connect the different components giving rise the final three-dimensional supramolecular structure (Fig. 2).