organic compounds
3-(7,8,13,14-Tetrahydrodibenzo[a,i]phenanthridin-5-yl)benzene-1,2-diol
aChemistry Division, School of Advanced Sciences, VIT University, Vellore 632014, India, bSchool of Chemistry, University of Hyderabad, Hyderabad 500046, India, and cBioinformatics Infrastructure Facility, Department of Biotechnology, School of Life Science, University of Hyderabad, Hyderabad 500046, India
*Correspondence e-mail: ravindranath_rathore@yahoo.com
In the title compound, C27H21NO2, the half-chair conformation of the alicyclic rings gives rise to a slightly folded structure of the central tricyclic tetrahydrophenanthridine unit. Tandem intramolecular O—H⋯N and O—H⋯O hydrogen bonds give rise to adjacent S(6) and S(5) rings, respectively, which dictate the conformation of the 5-aryl substituent. In the an intermolecular C—H⋯O contact generates chains parallel to [101]. Short O—H⋯π and C—H⋯π contacts are also observed.
Related literature
For the medicinal and optoelectronic applications of phenanthridine derivatives and for related structures, see: Sathiyanarayanan et al. (2009); Rathore et al. (2010a,b). For their synthesis, see: Sathiyanarayanan et al. (2009); Karthikeyan et al. (2009).
Experimental
Crystal data
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Refinement
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Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell CrysAlis PRO; data reduction: CrysAlis PRO; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 and PLATON.
Supporting information
10.1107/S1600536810023688/bh2296sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810023688/bh2296Isup2.hkl
A mixture of 2-tetralone (0.01 mol) and 2,3-dihydroxy benzaldehyde (0.02 mol) was added to a warm solution of ammonium acetate (0.01 mol) in absolute ethanol (15 ml). The mixture was gently warmed on a water bath until the yellow colour changed to orange and then kept aside for overnight at room temperature. The completion of the reaction was identified with TLC. The solid obtained was separated and the crude compound was purified by silica gel
with hexane and ethyl acetate as eluant. Suitable single crystals for data collection were grown from ethanol and tetrahydrofuran mixture (in 1:1 ratio). Yield, 66°, m.p. 266–268 °C.Hydrogen atoms were placed in their stereochemically expected positions and refined with the riding options. The distances with hydrogen atoms are: C(aromatic)—H = 0.93 Å, C(methylene)—H = 0.97 Å, O—H = 0.82 Å, and Uiso = 1.2 Ueq(parent) or 1.5 Ueq(for hydroxyl group). The torsion angles for the O—H H atoms were set with reference to a local difference Fourier map.
Data collection: CrysAlis PRO (Oxford Diffraction, 2009); cell
CrysAlis PRO (Oxford Diffraction, 2009); data reduction: CrysAlis PRO (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. A view of (I) with non-H atoms shown as probability ellipsoids at 30% level (Farrugia, 1997). H atoms radii are on an arbitrary scale. Dashed lines indicate intra-molecular hydrogen bonds. | |
Fig. 2. C—H···O bonded C(11) linear chain along along [1 0 1]-axis. | |
Fig. 3. The ring nomenclature, P1—P5, adopted for (I). |
C27H21NO2 | F(000) = 824 |
Mr = 391.45 | Dx = 1.337 Mg m−3 |
Monoclinic, P21/n | Melting point: 540(2) K |
Hall symbol: -P 2yn | Mo Kα radiation, λ = 0.71073 Å |
a = 11.4002 (10) Å | Cell parameters from 2754 reflections |
b = 10.2254 (7) Å | θ = 2.7–28.9° |
c = 17.3674 (16) Å | µ = 0.08 mm−1 |
β = 106.188 (10)° | T = 294 K |
V = 1944.3 (3) Å3 | Plate, colourless |
Z = 4 | 0.42 × 0.36 × 0.20 mm |
Oxford Diffraction Xcalibur Eos Gemini diffractometer | 3974 independent reflections |
Radiation source: Enhance (Mo) X-ray Source | 2174 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.036 |
Detector resolution: 16.3291 pixels mm-1 | θmax = 26.4°, θmin = 2.7° |
ω scan | h = −14→14 |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | k = −9→12 |
Tmin = 0.966, Tmax = 0.983 | l = −21→21 |
9150 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.042 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.092 | H-atom parameters constrained |
S = 0.86 | w = 1/[σ2(Fo2) + (0.0412P)2] where P = (Fo2 + 2Fc2)/3 |
3974 reflections | (Δ/σ)max < 0.001 |
273 parameters | Δρmax = 0.15 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
0 constraints |
C27H21NO2 | V = 1944.3 (3) Å3 |
Mr = 391.45 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 11.4002 (10) Å | µ = 0.08 mm−1 |
b = 10.2254 (7) Å | T = 294 K |
c = 17.3674 (16) Å | 0.42 × 0.36 × 0.20 mm |
β = 106.188 (10)° |
Oxford Diffraction Xcalibur Eos Gemini diffractometer | 3974 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 2174 reflections with I > 2σ(I) |
Tmin = 0.966, Tmax = 0.983 | Rint = 0.036 |
9150 measured reflections |
R[F2 > 2σ(F2)] = 0.042 | 0 restraints |
wR(F2) = 0.092 | H-atom parameters constrained |
S = 0.86 | Δρmax = 0.15 e Å−3 |
3974 reflections | Δρmin = −0.19 e Å−3 |
273 parameters |
Experimental. CrysAlis PRO, Oxford Diffraction Ltd., Version 1.171.33.55 (release 05–01-2010 CrysAlis171. NET) Empirical absorption correction using spherical harmonics, implemented in SCALE3 ABSPACK scaling algorithm. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.58139 (16) | 0.19964 (15) | 1.00791 (11) | 0.0382 (4) | |
C2 | 0.68255 (16) | 0.12360 (17) | 1.06347 (11) | 0.0519 (5) | |
H2A | 0.6793 | 0.0332 | 1.0460 | 0.062* | |
H2B | 0.6730 | 0.1253 | 1.1172 | 0.062* | |
C3 | 0.80504 (17) | 0.18322 (18) | 1.06389 (11) | 0.0517 (5) | |
H3A | 0.8109 | 0.2715 | 1.0850 | 0.062* | |
H3B | 0.8710 | 0.1319 | 1.0978 | 0.062* | |
C4 | 0.81547 (16) | 0.18521 (14) | 0.98005 (11) | 0.0398 (4) | |
C5 | 0.92342 (16) | 0.15038 (15) | 0.96280 (12) | 0.0471 (5) | |
H5 | 0.9921 | 0.1306 | 1.0046 | 0.057* | |
C6 | 0.93057 (17) | 0.14457 (15) | 0.88518 (13) | 0.0508 (5) | |
H6 | 1.0037 | 0.1222 | 0.8748 | 0.061* | |
C7 | 0.82859 (17) | 0.17209 (16) | 0.82289 (12) | 0.0483 (5) | |
H7 | 0.8325 | 0.1670 | 0.7702 | 0.058* | |
C8 | 0.72046 (16) | 0.20723 (14) | 0.83870 (11) | 0.0417 (4) | |
H8 | 0.6519 | 0.2245 | 0.7962 | 0.050* | |
C9 | 0.71229 (15) | 0.21729 (14) | 0.91707 (10) | 0.0351 (4) | |
C10 | 0.59725 (15) | 0.25250 (14) | 0.93686 (10) | 0.0341 (4) | |
C11 | 0.50312 (15) | 0.33225 (14) | 0.89077 (10) | 0.0335 (4) | |
C12 | 0.51453 (15) | 0.40983 (14) | 0.81910 (10) | 0.0400 (4) | |
H12A | 0.4838 | 0.3582 | 0.7708 | 0.048* | |
H12B | 0.5999 | 0.4290 | 0.8250 | 0.048* | |
C13 | 0.44307 (16) | 0.53713 (15) | 0.81136 (11) | 0.0445 (5) | |
H13A | 0.4774 | 0.5918 | 0.8578 | 0.053* | |
H13B | 0.4488 | 0.5842 | 0.7640 | 0.053* | |
C14 | 0.31175 (16) | 0.50795 (15) | 0.80502 (10) | 0.0369 (4) | |
C15 | 0.21463 (18) | 0.56693 (17) | 0.74949 (11) | 0.0475 (5) | |
H15 | 0.2296 | 0.6340 | 0.7173 | 0.057* | |
C16 | 0.09624 (19) | 0.52755 (17) | 0.74136 (12) | 0.0529 (5) | |
H16 | 0.0321 | 0.5689 | 0.7043 | 0.063* | |
C17 | 0.07236 (17) | 0.42738 (17) | 0.78777 (12) | 0.0496 (5) | |
H17 | −0.0073 | 0.3987 | 0.7810 | 0.059* | |
C18 | 0.16807 (16) | 0.36996 (16) | 0.84443 (11) | 0.0425 (5) | |
H18 | 0.1520 | 0.3028 | 0.8761 | 0.051* | |
C19 | 0.28837 (15) | 0.41046 (14) | 0.85521 (10) | 0.0348 (4) | |
C20 | 0.39375 (15) | 0.34712 (14) | 0.91349 (10) | 0.0337 (4) | |
C21 | 0.38970 (15) | 0.29631 (14) | 0.98754 (10) | 0.0352 (4) | |
C22 | 0.29358 (15) | 0.32283 (14) | 1.02851 (10) | 0.0355 (4) | |
C23 | 0.26657 (16) | 0.23013 (15) | 1.07973 (10) | 0.0375 (4) | |
C24 | 0.17524 (16) | 0.25250 (16) | 1.11694 (10) | 0.0408 (4) | |
C25 | 0.11592 (16) | 0.37071 (16) | 1.10857 (11) | 0.0474 (5) | |
H25 | 0.0549 | 0.3856 | 1.1336 | 0.057* | |
C26 | 0.14778 (17) | 0.46731 (17) | 1.06260 (12) | 0.0476 (5) | |
H26 | 0.1104 | 0.5488 | 1.0586 | 0.057* | |
C27 | 0.23424 (15) | 0.44406 (15) | 1.02280 (11) | 0.0424 (4) | |
H27 | 0.2538 | 0.5099 | 0.9915 | 0.051* | |
N1 | 0.48233 (13) | 0.22200 (12) | 1.03236 (8) | 0.0405 (4) | |
O1 | 0.32438 (12) | 0.11211 (10) | 1.09616 (8) | 0.0547 (4) | |
H1 | 0.3904 | 0.1158 | 1.0861 | 0.082* | |
O2 | 0.14479 (13) | 0.15665 (11) | 1.16295 (8) | 0.0580 (4) | |
H2 | 0.1878 | 0.0922 | 1.1635 | 0.087* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0440 (11) | 0.0378 (9) | 0.0325 (10) | 0.0032 (8) | 0.0105 (9) | 0.0031 (8) |
C2 | 0.0597 (13) | 0.0584 (11) | 0.0388 (12) | 0.0166 (10) | 0.0157 (10) | 0.0142 (10) |
C3 | 0.0477 (13) | 0.0604 (11) | 0.0404 (12) | 0.0116 (10) | 0.0012 (10) | 0.0030 (10) |
C4 | 0.0427 (11) | 0.0352 (9) | 0.0386 (11) | 0.0000 (8) | 0.0066 (9) | 0.0007 (8) |
C5 | 0.0367 (11) | 0.0421 (10) | 0.0568 (14) | 0.0028 (9) | 0.0034 (10) | 0.0006 (10) |
C6 | 0.0399 (12) | 0.0502 (11) | 0.0664 (15) | 0.0017 (9) | 0.0215 (11) | 0.0029 (11) |
C7 | 0.0475 (12) | 0.0541 (11) | 0.0493 (13) | 0.0027 (10) | 0.0232 (11) | 0.0031 (10) |
C8 | 0.0386 (11) | 0.0458 (10) | 0.0413 (12) | 0.0008 (9) | 0.0119 (9) | 0.0046 (9) |
C9 | 0.0363 (10) | 0.0319 (9) | 0.0357 (11) | −0.0016 (8) | 0.0078 (9) | 0.0011 (8) |
C10 | 0.0359 (10) | 0.0349 (9) | 0.0312 (10) | −0.0016 (8) | 0.0086 (8) | −0.0001 (8) |
C11 | 0.0374 (10) | 0.0345 (9) | 0.0282 (10) | −0.0033 (8) | 0.0087 (8) | 0.0003 (8) |
C12 | 0.0384 (11) | 0.0482 (10) | 0.0355 (11) | 0.0016 (8) | 0.0138 (9) | 0.0090 (9) |
C13 | 0.0500 (12) | 0.0440 (10) | 0.0404 (11) | −0.0002 (9) | 0.0143 (10) | 0.0101 (9) |
C14 | 0.0432 (11) | 0.0348 (9) | 0.0327 (10) | 0.0029 (8) | 0.0105 (9) | −0.0012 (8) |
C15 | 0.0566 (13) | 0.0459 (11) | 0.0415 (12) | 0.0114 (10) | 0.0162 (11) | 0.0074 (9) |
C16 | 0.0505 (13) | 0.0598 (12) | 0.0427 (12) | 0.0192 (10) | 0.0036 (10) | 0.0024 (10) |
C17 | 0.0365 (11) | 0.0591 (12) | 0.0509 (13) | 0.0032 (9) | 0.0086 (10) | −0.0072 (10) |
C18 | 0.0397 (11) | 0.0449 (10) | 0.0438 (12) | −0.0003 (9) | 0.0131 (9) | −0.0013 (9) |
C19 | 0.0387 (11) | 0.0357 (9) | 0.0304 (10) | 0.0033 (8) | 0.0102 (8) | −0.0022 (8) |
C20 | 0.0368 (10) | 0.0321 (9) | 0.0322 (10) | −0.0031 (8) | 0.0096 (8) | 0.0006 (8) |
C21 | 0.0406 (11) | 0.0322 (9) | 0.0339 (10) | −0.0021 (8) | 0.0123 (9) | 0.0016 (8) |
C22 | 0.0401 (11) | 0.0364 (9) | 0.0320 (10) | −0.0022 (8) | 0.0131 (8) | −0.0011 (8) |
C23 | 0.0459 (11) | 0.0356 (10) | 0.0329 (10) | −0.0008 (8) | 0.0142 (9) | −0.0036 (8) |
C24 | 0.0483 (12) | 0.0451 (10) | 0.0309 (10) | −0.0119 (9) | 0.0140 (9) | −0.0061 (8) |
C25 | 0.0459 (12) | 0.0535 (11) | 0.0491 (13) | −0.0033 (10) | 0.0235 (10) | −0.0110 (10) |
C26 | 0.0479 (12) | 0.0435 (10) | 0.0534 (13) | 0.0028 (9) | 0.0171 (10) | −0.0061 (10) |
C27 | 0.0452 (11) | 0.0385 (9) | 0.0442 (12) | −0.0013 (9) | 0.0134 (9) | 0.0003 (9) |
N1 | 0.0468 (10) | 0.0415 (8) | 0.0358 (9) | 0.0038 (7) | 0.0160 (8) | 0.0050 (7) |
O1 | 0.0700 (10) | 0.0442 (7) | 0.0605 (10) | 0.0078 (7) | 0.0356 (8) | 0.0108 (6) |
O2 | 0.0769 (11) | 0.0544 (7) | 0.0543 (9) | −0.0078 (7) | 0.0374 (8) | 0.0032 (7) |
C1—N1 | 1.332 (2) | C13—H13B | 0.9700 |
C1—C10 | 1.404 (2) | C14—C15 | 1.387 (2) |
C1—C2 | 1.498 (2) | C14—C19 | 1.398 (2) |
C2—C3 | 1.522 (2) | C15—C16 | 1.377 (2) |
C2—H2A | 0.9700 | C15—H15 | 0.9300 |
C2—H2B | 0.9700 | C16—C17 | 1.377 (2) |
C3—C4 | 1.494 (2) | C16—H16 | 0.9300 |
C3—H3A | 0.9700 | C17—C18 | 1.380 (2) |
C3—H3B | 0.9700 | C17—H17 | 0.9300 |
C4—C5 | 1.392 (2) | C18—C19 | 1.394 (2) |
C4—C9 | 1.404 (2) | C18—H18 | 0.9300 |
C5—C6 | 1.374 (3) | C19—C20 | 1.486 (2) |
C5—H5 | 0.9300 | C20—C21 | 1.400 (2) |
C6—C7 | 1.378 (2) | C21—N1 | 1.357 (2) |
C6—H6 | 0.9300 | C21—C22 | 1.488 (2) |
C7—C8 | 1.383 (2) | C22—C23 | 1.392 (2) |
C7—H7 | 0.9300 | C22—C27 | 1.402 (2) |
C8—C9 | 1.394 (2) | C23—O1 | 1.3665 (18) |
C8—H8 | 0.9300 | C23—C24 | 1.389 (2) |
C9—C10 | 1.490 (2) | C24—O2 | 1.3691 (19) |
C10—C11 | 1.406 (2) | C24—C25 | 1.373 (2) |
C11—C20 | 1.417 (2) | C25—C26 | 1.381 (2) |
C11—C12 | 1.512 (2) | C25—H25 | 0.9300 |
C12—C13 | 1.522 (2) | C26—C27 | 1.373 (2) |
C12—H12A | 0.9700 | C26—H26 | 0.9300 |
C12—H12B | 0.9700 | C27—H27 | 0.9300 |
C13—C14 | 1.500 (2) | O1—H1 | 0.8200 |
C13—H13A | 0.9700 | O2—H2 | 0.8200 |
N1—C1—C10 | 122.83 (16) | C14—C13—H13B | 109.8 |
N1—C1—C2 | 116.89 (16) | C12—C13—H13B | 109.8 |
C10—C1—C2 | 120.08 (16) | H13A—C13—H13B | 108.2 |
C1—C2—C3 | 109.61 (14) | C15—C14—C19 | 119.31 (17) |
C1—C2—H2A | 109.7 | C15—C14—C13 | 123.46 (16) |
C3—C2—H2A | 109.7 | C19—C14—C13 | 117.12 (16) |
C1—C2—H2B | 109.7 | C16—C15—C14 | 120.90 (17) |
C3—C2—H2B | 109.7 | C16—C15—H15 | 119.5 |
H2A—C2—H2B | 108.2 | C14—C15—H15 | 119.5 |
C4—C3—C2 | 108.85 (15) | C17—C16—C15 | 120.36 (18) |
C4—C3—H3A | 109.9 | C17—C16—H16 | 119.8 |
C2—C3—H3A | 109.9 | C15—C16—H16 | 119.8 |
C4—C3—H3B | 109.9 | C16—C17—C18 | 119.20 (18) |
C2—C3—H3B | 109.9 | C16—C17—H17 | 120.4 |
H3A—C3—H3B | 108.3 | C18—C17—H17 | 120.4 |
C5—C4—C9 | 119.42 (17) | C17—C18—C19 | 121.45 (17) |
C5—C4—C3 | 121.46 (16) | C17—C18—H18 | 119.3 |
C9—C4—C3 | 119.05 (16) | C19—C18—H18 | 119.3 |
C6—C5—C4 | 121.34 (18) | C18—C19—C14 | 118.65 (16) |
C6—C5—H5 | 119.3 | C18—C19—C20 | 122.68 (15) |
C4—C5—H5 | 119.3 | C14—C19—C20 | 118.49 (15) |
C5—C6—C7 | 119.57 (17) | C21—C20—C11 | 118.24 (15) |
C5—C6—H6 | 120.2 | C21—C20—C19 | 124.05 (15) |
C7—C6—H6 | 120.2 | C11—C20—C19 | 117.64 (15) |
C6—C7—C8 | 120.04 (18) | N1—C21—C20 | 121.02 (15) |
C6—C7—H7 | 120.0 | N1—C21—C22 | 112.76 (15) |
C8—C7—H7 | 120.0 | C20—C21—C22 | 126.08 (15) |
C7—C8—C9 | 121.27 (17) | C23—C22—C27 | 117.31 (15) |
C7—C8—H8 | 119.4 | C23—C22—C21 | 120.33 (14) |
C9—C8—H8 | 119.4 | C27—C22—C21 | 122.15 (14) |
C8—C9—C4 | 118.30 (16) | O1—C23—C24 | 115.39 (14) |
C8—C9—C10 | 123.09 (16) | O1—C23—C22 | 123.72 (15) |
C4—C9—C10 | 118.50 (16) | C24—C23—C22 | 120.88 (15) |
C1—C10—C11 | 117.29 (15) | O2—C24—C25 | 119.64 (16) |
C1—C10—C9 | 116.55 (15) | O2—C24—C23 | 119.91 (15) |
C11—C10—C9 | 126.15 (15) | C25—C24—C23 | 120.45 (16) |
C10—C11—C20 | 119.65 (15) | C24—C25—C26 | 119.33 (17) |
C10—C11—C12 | 123.07 (15) | C24—C25—H25 | 120.3 |
C20—C11—C12 | 117.22 (14) | C26—C25—H25 | 120.3 |
C11—C12—C13 | 110.78 (13) | C27—C26—C25 | 120.57 (16) |
C11—C12—H12A | 109.5 | C27—C26—H26 | 119.7 |
C13—C12—H12A | 109.5 | C25—C26—H26 | 119.7 |
C11—C12—H12B | 109.5 | C26—C27—C22 | 121.15 (16) |
C13—C12—H12B | 109.5 | C26—C27—H27 | 119.4 |
H12A—C12—H12B | 108.1 | C22—C27—H27 | 119.4 |
C14—C13—C12 | 109.58 (13) | C1—N1—C21 | 120.44 (15) |
C14—C13—H13A | 109.8 | C23—O1—H1 | 109.5 |
C12—C13—H13A | 109.8 | C24—O2—H2 | 109.5 |
N1—C1—C2—C3 | −139.21 (16) | C17—C18—C19—C20 | −177.56 (15) |
C10—C1—C2—C3 | 35.8 (2) | C15—C14—C19—C18 | 3.9 (2) |
C1—C2—C3—C4 | −56.87 (18) | C13—C14—C19—C18 | −172.52 (15) |
C2—C3—C4—C5 | −137.29 (16) | C15—C14—C19—C20 | 179.13 (15) |
C2—C3—C4—C9 | 39.81 (19) | C13—C14—C19—C20 | 2.7 (2) |
C9—C4—C5—C6 | −1.1 (2) | C10—C11—C20—C21 | 8.8 (2) |
C3—C4—C5—C6 | 175.97 (15) | C12—C11—C20—C21 | −168.34 (14) |
C4—C5—C6—C7 | −0.8 (3) | C10—C11—C20—C19 | −168.43 (14) |
C5—C6—C7—C8 | 1.0 (3) | C12—C11—C20—C19 | 14.5 (2) |
C6—C7—C8—C9 | 0.8 (2) | C18—C19—C20—C21 | −34.8 (2) |
C7—C8—C9—C4 | −2.8 (2) | C14—C19—C20—C21 | 150.12 (15) |
C7—C8—C9—C10 | −178.89 (14) | C18—C19—C20—C11 | 142.20 (16) |
C5—C4—C9—C8 | 2.9 (2) | C14—C19—C20—C11 | −32.9 (2) |
C3—C4—C9—C8 | −174.29 (14) | C11—C20—C21—N1 | −7.4 (2) |
C5—C4—C9—C10 | 179.17 (13) | C19—C20—C21—N1 | 169.61 (14) |
C3—C4—C9—C10 | 2.0 (2) | C11—C20—C21—C22 | 167.95 (14) |
N1—C1—C10—C11 | 0.1 (2) | C19—C20—C21—C22 | −15.1 (2) |
C2—C1—C10—C11 | −174.64 (14) | N1—C21—C22—C23 | −32.9 (2) |
N1—C1—C10—C9 | −179.29 (14) | C20—C21—C22—C23 | 151.40 (16) |
C2—C1—C10—C9 | 6.0 (2) | N1—C21—C22—C27 | 141.72 (16) |
C8—C9—C10—C1 | 149.50 (15) | C20—C21—C22—C27 | −33.9 (2) |
C4—C9—C10—C1 | −26.6 (2) | C27—C22—C23—O1 | −174.59 (15) |
C8—C9—C10—C11 | −29.8 (2) | C21—C22—C23—O1 | 0.3 (3) |
C4—C9—C10—C11 | 154.06 (15) | C27—C22—C23—C24 | 6.5 (3) |
C1—C10—C11—C20 | −5.2 (2) | C21—C22—C23—C24 | −178.57 (15) |
C9—C10—C11—C20 | 174.09 (14) | O1—C23—C24—O2 | −3.2 (2) |
C1—C10—C11—C12 | 171.70 (15) | C22—C23—C24—O2 | 175.78 (16) |
C9—C10—C11—C12 | −9.0 (2) | O1—C23—C24—C25 | 176.16 (16) |
C10—C11—C12—C13 | −147.04 (15) | C22—C23—C24—C25 | −4.9 (3) |
C20—C11—C12—C13 | 29.9 (2) | O2—C24—C25—C26 | 179.48 (17) |
C11—C12—C13—C14 | −57.30 (19) | C23—C24—C25—C26 | 0.1 (3) |
C12—C13—C14—C15 | −134.66 (16) | C24—C25—C26—C27 | 2.7 (3) |
C12—C13—C14—C19 | 41.6 (2) | C25—C26—C27—C22 | −0.9 (3) |
C19—C14—C15—C16 | −2.3 (3) | C23—C22—C27—C26 | −3.7 (3) |
C13—C14—C15—C16 | 173.86 (16) | C21—C22—C27—C26 | −178.51 (17) |
C14—C15—C16—C17 | −0.8 (3) | C10—C1—N1—C21 | 1.4 (2) |
C15—C16—C17—C18 | 2.2 (3) | C2—C1—N1—C21 | 176.29 (14) |
C16—C17—C18—C19 | −0.5 (3) | C20—C21—N1—C1 | 2.4 (2) |
C17—C18—C19—C14 | −2.5 (2) | C22—C21—N1—C1 | −173.55 (14) |
Cg3 is the centroid of C4–C9 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 0.82 | 1.92 | 2.616 (2) | 142 |
O2—H2···O1 | 0.82 | 2.20 | 2.659 (2) | 115 |
C8—H8···O2i | 0.93 | 2.60 | 3.245 (2) | 127 |
O2—H2···Cg3ii | 0.82 | 2.99 | 3.6649 (14) | 142 |
C26—H26···Cg3iii | 0.93 | 2.92 | 3.6663 (19) | 139 |
Symmetry codes: (i) x+1/2, −y+1/2, z−1/2; (ii) −x+1, −y, −z+2; (iii) −x+1, −y+1, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C27H21NO2 |
Mr | 391.45 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 294 |
a, b, c (Å) | 11.4002 (10), 10.2254 (7), 17.3674 (16) |
β (°) | 106.188 (10) |
V (Å3) | 1944.3 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.42 × 0.36 × 0.20 |
Data collection | |
Diffractometer | Oxford Diffraction Xcalibur Eos Gemini diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.966, 0.983 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9150, 3974, 2174 |
Rint | 0.036 |
(sin θ/λ)max (Å−1) | 0.625 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.042, 0.092, 0.86 |
No. of reflections | 3974 |
No. of parameters | 273 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.15, −0.19 |
Computer programs: CrysAlis PRO (Oxford Diffraction, 2009), SHELXS97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
Cg3 is the centroid of C4–C9 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1···N1 | 0.82 | 1.92 | 2.616 (2) | 142 |
O2—H2···O1 | 0.82 | 2.20 | 2.659 (2) | 115 |
C8—H8···O2i | 0.93 | 2.60 | 3.245 (2) | 127 |
O2—H2···Cg3ii | 0.82 | 2.99 | 3.6649 (14) | 142 |
C26—H26···Cg3iii | 0.93 | 2.92 | 3.6663 (19) | 139 |
Symmetry codes: (i) x+1/2, −y+1/2, z−1/2; (ii) −x+1, −y, −z+2; (iii) −x+1, −y+1, −z+2. |
Acknowledgements
The Bioinformatics Infrastructure Facility and the Single Crystal X-ray Diffractometer Facility at the University of Hyderabad are gratefully acknowledged for computation and data collection work. RSR thanks the CSIR, New Delhi, for support under the scientist's pool scheme and NSK thanks the CSIR for a Senior Research Fellowship.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Phenanthridine derivatives are attractive candidates for medicinal and optoelectronic applications (Sathiyanarayanan et al., 2009; Rathore et al., 2010a,b). Following our new high-yielding synthetic procedure of simultaneous synthesis of phenanthridine and azabicyclo[3.3.1]nonanone, involving one-step process using tetralone and substituted benzaldehydes (Sathiyanarayanan et al., 2009; Karthikeyan et al., 2009), a series of one of its important pentacyclic derivative i.e., 5-aryl-7,8,13,14-tetrahydro-dibenzo[a,i]phenanthridine (5ATDP) were prepared. In the present work, 5-(2,3-dihydroxyphenyl)-7,8,13,14-tetrahydro-dibenzo[a,i]phenanthridine, (I), is examined. The ring nomenclature, P1—P5 is illustrated in Supplementary Fig. 3.
The structure of (I) with adopted atom-numbering scheme is shown in Fig. 1. Alicyclic P2 (C1—C3/C4/C9/C10) and P4 (C11—C13/C14/C19/C20) rings adopt a half-chair (C2) conformation. Ring puckering parameters are as follows: ring-P2: q2 = 0.5127 (19) Å, q3 = -0.1717 (19) Å, θ = 108.5 (2)°, ϕ = 273.1 (2)°, and total puckering amplitude, Q = 0.5409 (19) Å; ring-P4: q2 = 0.5427 (18) Å, q3 = -0.1448 (18) Å, θ = 104.94 (18)°, ϕ = 278.09 (19)°, and total puckering amplitude, Q = 0.5617 (18) Å. The puckering of P2 and P4 leads to a slightly folded structure of central tetrahydro-phenanthridine tricyclic ring (N1/C1—C4/C9—C14/C19—C21), a characteristic feature among previously investigated 5ATDP analogs (Sathiyanarayanan et al., 2009; Rathore et al., 2010a).
All previously investigated 5ATDP compounds are characterized by the only plausible, cooperative C—H···N bonded R22(14) closed dimers – between axial H atom of alicyclic-P4 ring and pyridine N – and these interactions are sometimes augmented by C—H···π interactions (Sathiyanarayanan et al., 2009; Rathore et al., 2010a). In contrast, the packing arrangement in (I) is different due to the presence of two strong hydroxyl donors. Two tandem intramolecular hydrogen bonds, namely O1—H1···N1 and O2—H2···O1 form hydrogen bonded two adjacent S(6) and S(5) rings (Fig. 1). The intramolecular hydrogen bonds dictate the conformation of 5-aryl substituent. An intermolecular C8—H8···O2i [symmetry code (ii): 1/2 + x, 1/2 - y, -1/2 + z] hydrogen bond give rise to a molecular one-dimensional C(11) chain, parallel to [1 0 1] (Fig. 2). Two short contacts, O2—H2···.Cg3ii [symmetry code (ii): 1 - x, -y, 2 - z] and C26—H26···Cg3iii [symmetry code (iii): 1 - x, 1 - y, 2 - z] are also observed in the crystal structure (Cg3 is the centroids of (C4—C9) ring).