organic compounds
Ethyl 5-cyano-8-nitro-2,3,4,4a,5,6-hexahydro-1H-pyrido[1,2-a]quinoline-5-carboxylate
aLaboratoire de Cristallographie et Physique Moléculaire, UFR–SSMT, Université de Cocody, 22 BP 582 Abidjan 22, Côte d'Ivoire, and bLaboratoire de Chimie Organique Structurale, UFR–SSMT, Université de Cocody, 22 BP 582 Abidjan 22, Côte d'Ivoire
*Correspondence e-mail: marcellin.yapo@univ-cocody.ci
In the title compound, C17H19N3O4, the piperidine ring adopts a chair conformation. The features inversion dimers linked by pairs of weak C—H⋯N hydrogen bonds.
Related literature
For the therapeutic properties of quinoline derivatives, see: Dalla Via et al. (2008); Gasparotto et al. (2006); Ferlin et al. (2000). A similar heterocyclic structure, Mitomycin C, is used in cancer therapy, see: Crooke & Bradner (1976); Danishefsky & Ciufolini (1984); Remers (1980). For related structures, see: Zhuravleva et al. (2009); Oliveira et al. (2006). For ring conformation analysis, see: Cremer & Pople (1975). For reference bond lengths, see: Allen et al. (1987).
Experimental
Crystal data
|
Data collection
|
Refinement
|
Data collection: COLLECT (Nonius, 2001); cell DENZO/SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO/SCALEPACK; program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: CRYSTALS.
Supporting information
10.1107/S160053681002283X/bq2218sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681002283X/bq2218Isup2.hkl
3.5 g, 10 mmol of malonic arylidene was dissolved in 10 ml of dimethylformamide. The melange was heated to reflux during 24 h. After cooling to ambient temperature, 20 ml of water was added to the melange. After extraction to ethyl acetate (150 ml), the organic layers were dried on magnesium sulfate, filtered and concentrated under reduced pressure. The residue was purified by
on silica gel using hexane/ethyl acetate (80/20) to obtain yellow crystals with 45% yields. The melting point is 424 KThe H atoms were all located in a difference map and then treated as ridings atoms with C—H in the range 0.93–0.98Å and Uiso(H) in the range 1.2–1.5 times Ueq of the parent atom.
Data collection: COLLECT (Nonius, 2001); cell
DENZO/SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO/SCALEPACK (Otwinowski & Minor, 1997); program(s) used to solve structure: SIR2004 (Burla et al., 2005); program(s) used to refine structure: CRYSTALS (Betteridge et al., 2003); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: CRYSTALS (Betteridge et al., 2003).C17H19N3O4 | Z = 2 |
Mr = 329.36 | F(000) = 348 |
Triclinic, P1 | Dx = 1.333 Mg m−3 |
Hall symbol: -P 1 | Melting point: 424 K |
a = 8.8257 (4) Å | Mo Kα radiation, λ = 0.71073 Å |
b = 9.2256 (5) Å | Cell parameters from 10064 reflections |
c = 10.5011 (6) Å | θ = 2–29° |
α = 88.246 (4)° | µ = 0.10 mm−1 |
β = 75.089 (2)° | T = 223 K |
γ = 83.289 (3)° | Prism, yellow |
V = 820.57 (8) Å3 | 0.20 × 0.20 × 0.20 mm |
Nonius KappaCCD diffractometer | Rint = 0.04 |
Graphite monochromator | θmax = 29.1°, θmin = 2.0° |
ϕ and ω scans | h = 0→12 |
10064 measured reflections | k = −11→12 |
4189 independent reflections | l = −13→14 |
2794 reflections with I > 2σ(I) |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.055 | H-atom parameters constrained |
wR(F2) = 0.096 | w = 1/[σ2(F2) + (0.02P)2 + 0.5P], where P = (max(Fo2,0) + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max = 0.000163 |
2503 reflections | Δρmax = 0.21 e Å−3 |
217 parameters | Δρmin = −0.26 e Å−3 |
0 restraints |
C17H19N3O4 | γ = 83.289 (3)° |
Mr = 329.36 | V = 820.57 (8) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.8257 (4) Å | Mo Kα radiation |
b = 9.2256 (5) Å | µ = 0.10 mm−1 |
c = 10.5011 (6) Å | T = 223 K |
α = 88.246 (4)° | 0.20 × 0.20 × 0.20 mm |
β = 75.089 (2)° |
Nonius KappaCCD diffractometer | 2794 reflections with I > 2σ(I) |
10064 measured reflections | Rint = 0.04 |
4189 independent reflections |
R[F2 > 2σ(F2)] = 0.055 | 0 restraints |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.21 e Å−3 |
2503 reflections | Δρmin = −0.26 e Å−3 |
217 parameters |
x | y | z | Uiso*/Ueq | ||
C1 | 0.70920 (19) | 0.86006 (18) | 0.50748 (17) | 0.0241 | |
N1 | 0.70324 (17) | 0.85963 (14) | 0.63954 (14) | 0.0268 | |
O3 | 0.66155 (17) | 0.46173 (14) | 0.84947 (13) | 0.0393 | |
C9 | 0.7451 (2) | 0.72488 (18) | 0.70764 (17) | 0.0256 | |
C2 | 0.6873 (2) | 0.99129 (19) | 0.43830 (18) | 0.0287 | |
C6 | 0.7271 (2) | 0.72669 (18) | 0.43802 (17) | 0.0269 | |
C5 | 0.7160 (2) | 0.72795 (19) | 0.30929 (18) | 0.0308 | |
C4 | 0.6920 (2) | 0.8595 (2) | 0.24574 (17) | 0.0311 | |
O4 | 0.8187 (2) | 0.35165 (15) | 0.66714 (15) | 0.0548 | |
O2 | 0.6821 (2) | 0.74186 (19) | 0.05771 (16) | 0.0639 | |
C3 | 0.6790 (2) | 0.99068 (19) | 0.30939 (18) | 0.0308 | |
C7 | 0.7604 (2) | 0.58338 (19) | 0.50323 (18) | 0.0325 | |
C8 | 0.6879 (2) | 0.59435 (18) | 0.65159 (17) | 0.0278 | |
C10 | 0.9210 (2) | 0.7072 (2) | 0.70064 (19) | 0.0327 | |
N3 | 0.3802 (2) | 0.63652 (18) | 0.69548 (19) | 0.0450 | |
N2 | 0.6797 (2) | 0.8591 (2) | 0.11110 (17) | 0.0436 | |
O1 | 0.6673 (2) | 0.97711 (19) | 0.05381 (15) | 0.0652 | |
C13 | 0.7303 (2) | 0.98771 (19) | 0.70769 (18) | 0.0310 | |
C17 | 0.5143 (2) | 0.61781 (18) | 0.67811 (19) | 0.0322 | |
C12 | 0.9039 (2) | 0.9820 (2) | 0.70523 (19) | 0.0346 | |
C14 | 0.7321 (2) | 0.45278 (19) | 0.72194 (19) | 0.0328 | |
C11 | 0.9606 (2) | 0.8393 (2) | 0.7643 (2) | 0.0358 | |
C15 | 0.6946 (3) | 0.3372 (2) | 0.9327 (2) | 0.0461 | |
C16 | 0.8465 (4) | 0.3441 (3) | 0.9667 (3) | 0.0711 | |
H91 | 0.6874 | 0.7364 | 0.8009 | 0.0307* | |
H51 | 0.7270 | 0.6393 | 0.2640 | 0.0374* | |
H31 | 0.6639 | 1.0787 | 0.2640 | 0.0358* | |
H71 | 0.8751 | 0.5568 | 0.4875 | 0.0395* | |
H72 | 0.7193 | 0.5065 | 0.4655 | 0.0388* | |
H101 | 0.9454 | 0.6173 | 0.7460 | 0.0386* | |
H102 | 0.9806 | 0.7000 | 0.6083 | 0.0399* | |
H122 | 0.9191 | 1.0653 | 0.7543 | 0.0424* | |
H121 | 0.9656 | 0.9890 | 0.6138 | 0.0425* | |
H112 | 1.0737 | 0.8312 | 0.7531 | 0.0436* | |
H111 | 0.9082 | 0.8405 | 0.8586 | 0.0444* | |
H152 | 0.6075 | 0.3476 | 1.0124 | 0.0547* | |
H151 | 0.6960 | 0.2467 | 0.8845 | 0.0545* | |
H162 | 0.8619 | 0.2658 | 1.0269 | 0.0858* | |
H161 | 0.8453 | 0.4366 | 1.0086 | 0.0858* | |
H163 | 0.9346 | 0.3328 | 0.8875 | 0.0858* | |
H21 | 0.6783 | 1.0810 | 0.4814 | 0.0340* | |
H131 | 0.6679 | 0.9883 | 0.7985 | 0.0380* | |
H132 | 0.6990 | 1.0760 | 0.6639 | 0.0380* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0202 (8) | 0.0264 (9) | 0.0259 (9) | −0.0011 (6) | −0.0068 (7) | −0.0010 (7) |
N1 | 0.0338 (9) | 0.0213 (7) | 0.0269 (8) | 0.0003 (6) | −0.0122 (7) | −0.0028 (6) |
O3 | 0.0480 (9) | 0.0337 (7) | 0.0313 (8) | 0.0038 (6) | −0.0057 (6) | 0.0066 (6) |
C9 | 0.0293 (9) | 0.0242 (8) | 0.0237 (9) | −0.0009 (7) | −0.0087 (7) | 0.0007 (7) |
C2 | 0.0264 (9) | 0.0269 (9) | 0.0316 (10) | −0.0020 (7) | −0.0061 (8) | 0.0012 (7) |
C6 | 0.0268 (9) | 0.0274 (9) | 0.0258 (9) | −0.0008 (7) | −0.0066 (7) | 0.0000 (7) |
C5 | 0.0332 (10) | 0.0331 (10) | 0.0262 (9) | −0.0035 (8) | −0.0076 (8) | −0.0024 (7) |
C4 | 0.0301 (10) | 0.0422 (11) | 0.0206 (9) | −0.0055 (8) | −0.0058 (7) | 0.0036 (7) |
O4 | 0.0801 (12) | 0.0323 (8) | 0.0403 (9) | 0.0185 (8) | −0.0056 (8) | 0.0011 (6) |
O2 | 0.0985 (15) | 0.0666 (11) | 0.0350 (9) | −0.0240 (10) | −0.0255 (9) | −0.0007 (8) |
C3 | 0.0245 (9) | 0.0345 (10) | 0.0313 (10) | −0.0025 (7) | −0.0048 (8) | 0.0086 (8) |
C7 | 0.0452 (11) | 0.0265 (9) | 0.0259 (10) | 0.0021 (8) | −0.0115 (9) | −0.0037 (7) |
C8 | 0.0326 (10) | 0.0233 (9) | 0.0276 (10) | 0.0006 (7) | −0.0097 (8) | 0.0001 (7) |
C10 | 0.0302 (10) | 0.0314 (10) | 0.0361 (11) | 0.0007 (8) | −0.0101 (8) | 0.0039 (8) |
N3 | 0.0402 (11) | 0.0384 (10) | 0.0596 (12) | −0.0061 (8) | −0.0174 (9) | −0.0034 (8) |
N2 | 0.0455 (11) | 0.0574 (12) | 0.0267 (9) | −0.0062 (9) | −0.0076 (8) | 0.0059 (8) |
O1 | 0.0931 (14) | 0.0654 (11) | 0.0342 (9) | 0.0056 (10) | −0.0195 (9) | 0.0154 (8) |
C13 | 0.0372 (11) | 0.0257 (9) | 0.0320 (10) | −0.0002 (8) | −0.0132 (8) | −0.0046 (7) |
C17 | 0.0422 (12) | 0.0223 (9) | 0.0349 (10) | −0.0051 (8) | −0.0141 (9) | −0.0009 (7) |
C12 | 0.0362 (11) | 0.0338 (10) | 0.0358 (11) | −0.0078 (8) | −0.0110 (9) | −0.0017 (8) |
C14 | 0.0400 (11) | 0.0265 (9) | 0.0321 (10) | −0.0015 (8) | −0.0105 (9) | 0.0009 (8) |
C11 | 0.0282 (10) | 0.0431 (11) | 0.0378 (11) | −0.0062 (8) | −0.0108 (8) | 0.0019 (9) |
C15 | 0.0573 (14) | 0.0401 (12) | 0.0364 (12) | 0.0018 (10) | −0.0088 (10) | 0.0141 (9) |
C16 | 0.0735 (19) | 0.086 (2) | 0.0595 (17) | −0.0018 (15) | −0.0330 (15) | 0.0224 (14) |
C1—N1 | 1.374 (2) | C7—H72 | 0.971 |
C1—C2 | 1.412 (2) | C8—C17 | 1.476 (3) |
C1—C6 | 1.422 (2) | C8—C14 | 1.541 (2) |
N1—C9 | 1.472 (2) | C10—C11 | 1.525 (3) |
N1—C13 | 1.474 (2) | C10—H101 | 0.973 |
O3—C14 | 1.324 (2) | C10—H102 | 0.977 |
O3—C15 | 1.469 (2) | N3—C17 | 1.143 (2) |
C9—C8 | 1.546 (2) | N2—O1 | 1.235 (2) |
C9—C10 | 1.524 (3) | C13—C12 | 1.520 (3) |
C9—H91 | 0.983 | C13—H131 | 0.970 |
C2—C3 | 1.375 (3) | C13—H132 | 0.970 |
C2—H21 | 0.941 | C12—C11 | 1.524 (3) |
C6—C5 | 1.380 (2) | C12—H122 | 0.979 |
C6—C7 | 1.504 (2) | C12—H121 | 0.979 |
C5—C4 | 1.388 (3) | C11—H112 | 0.969 |
C5—H51 | 0.941 | C11—H111 | 0.979 |
C4—C3 | 1.379 (3) | C15—C16 | 1.482 (4) |
C4—N2 | 1.446 (2) | C15—H152 | 0.979 |
O4—C14 | 1.194 (2) | C15—H151 | 0.987 |
O2—N2 | 1.229 (2) | C16—H162 | 0.966 |
C3—H31 | 0.942 | C16—H161 | 0.969 |
C7—C8 | 1.526 (2) | C16—H163 | 0.980 |
C7—H71 | 0.985 | ||
N1—C1—C2 | 121.61 (15) | C11—C10—H101 | 111.3 |
N1—C1—C6 | 120.57 (15) | C9—C10—H102 | 109.0 |
C2—C1—C6 | 117.69 (16) | C11—C10—H102 | 109.9 |
C1—N1—C9 | 121.40 (13) | H101—C10—H102 | 109.1 |
C1—N1—C13 | 122.69 (14) | C4—N2—O2 | 119.05 (17) |
C9—N1—C13 | 109.99 (13) | C4—N2—O1 | 118.60 (18) |
C14—O3—C15 | 117.40 (15) | O2—N2—O1 | 122.36 (18) |
N1—C9—C8 | 109.45 (14) | N1—C13—C12 | 110.21 (14) |
N1—C9—C10 | 110.06 (14) | N1—C13—H131 | 109.3 |
C8—C9—C10 | 114.36 (14) | C12—C13—H131 | 109.3 |
N1—C9—H91 | 107.0 | N1—C13—H132 | 109.3 |
C8—C9—H91 | 108.0 | C12—C13—H132 | 109.3 |
C10—C9—H91 | 107.7 | H131—C13—H132 | 109.4 |
C1—C2—C3 | 121.40 (16) | C8—C17—N3 | 178.4 (2) |
C1—C2—H21 | 119.3 | C13—C12—C11 | 110.80 (15) |
C3—C2—H21 | 119.3 | C13—C12—H122 | 109.2 |
C1—C6—C5 | 120.13 (16) | C11—C12—H122 | 110.4 |
C1—C6—C7 | 120.45 (15) | C13—C12—H121 | 109.0 |
C5—C6—C7 | 119.41 (15) | C11—C12—H121 | 109.0 |
C6—C5—C4 | 120.19 (16) | H122—C12—H121 | 108.5 |
C6—C5—H51 | 119.8 | C8—C14—O3 | 110.12 (15) |
C4—C5—H51 | 120.0 | C8—C14—O4 | 123.73 (18) |
C5—C4—C3 | 120.93 (17) | O3—C14—O4 | 126.15 (17) |
C5—C4—N2 | 119.57 (17) | C10—C11—C12 | 111.70 (16) |
C3—C4—N2 | 119.49 (17) | C10—C11—H112 | 108.7 |
C4—C3—C2 | 119.60 (16) | C12—C11—H112 | 110.4 |
C4—C3—H31 | 119.5 | C10—C11—H111 | 109.4 |
C2—C3—H31 | 120.9 | C12—C11—H111 | 107.7 |
C6—C7—C8 | 110.18 (14) | H112—C11—H111 | 108.9 |
C6—C7—H71 | 110.2 | O3—C15—C16 | 110.69 (19) |
C8—C7—H71 | 108.6 | O3—C15—H152 | 104.8 |
C6—C7—H72 | 110.0 | C16—C15—H152 | 110.0 |
C8—C7—H72 | 110.7 | O3—C15—H151 | 108.1 |
H71—C7—H72 | 107.2 | C16—C15—H151 | 111.3 |
C9—C8—C7 | 109.74 (14) | H152—C15—H151 | 111.7 |
C9—C8—C17 | 108.75 (14) | C15—C16—H162 | 109.3 |
C7—C8—C17 | 109.52 (15) | C15—C16—H161 | 110.0 |
C9—C8—C14 | 109.75 (14) | H162—C16—H161 | 109.0 |
C7—C8—C14 | 111.10 (14) | C15—C16—H163 | 110.6 |
C17—C8—C14 | 107.93 (15) | H162—C16—H163 | 108.3 |
C9—C10—C11 | 109.16 (14) | H161—C16—H163 | 109.6 |
C9—C10—H101 | 108.3 |
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H72···N3i | 0.97 | 2.56 | 3.492 (3) | 161 |
Symmetry code: (i) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C17H19N3O4 |
Mr | 329.36 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 223 |
a, b, c (Å) | 8.8257 (4), 9.2256 (5), 10.5011 (6) |
α, β, γ (°) | 88.246 (4), 75.089 (2), 83.289 (3) |
V (Å3) | 820.57 (8) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.20 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10064, 4189, 2794 |
Rint | 0.04 |
(sin θ/λ)max (Å−1) | 0.683 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.055, 0.096, 1.04 |
No. of reflections | 2503 |
No. of parameters | 217 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.21, −0.26 |
Computer programs: COLLECT (Nonius, 2001), DENZO/SCALEPACK (Otwinowski & Minor, 1997), SIR2004 (Burla et al., 2005), CRYSTALS (Betteridge et al., 2003), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C7—H72···N3i | 0.97 | 2.56 | 3.492 (3) | 161 |
Symmetry code: (i) −x+1, −y+1, −z+1. |
Acknowledgements
The authors wish to thank the Laboratoire de Physique des Interactions Ioniques et Moléculaires of Provence University (France) for the use of the diffractometer.
References
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Tricyclic quinoline derivatives have diverse and important therapeutic properties (Dalla Via et al., 2008; Gasparotto et al., 2006; Ferlin et al., 2000). These heterocyclic are similar to Mitomycin C which is a powerful antibiotic used in cancerous chemotherapy (Crooke et al., 1976; Remers et al., 1980; Danishefsky et al., 1984). They are also used as intermediate compound to elaborate keratic fiber colorings. Here, we report the single X-ray determination of the title compound C17H19N3O4, (I), in order to have a best insight of its structure and then to undertake a study of its possible therapeutic activity. The molecular structure of this compound and its atomic labeling scheme are shown in Figure 1. The bond lenghts distances are within the accepted range (Allen et al., 1987). In (I), there are two coupled rings: quinoline and piperidine rings. The geometrical characteristics relating bond distances in quinoline ring are consistent and present no particularity with the recently reported (Oliveira et al., 2006; Zhuravleva et al., 2009). By least squares planes method, it is observed that carbon atom C8 deviates of -0.4074Å to quinoline cycle plane what proves that quinoline ring is not veritably plane. Concerning piperidine ring, it assumes a chair conformation which the puckering parameters (Cremer & Pople, 1975): θ=7.78°, Q=0.6147Å and Φ=42.46°. The crystal packing is due to the weak hydrogen bonds C-H···N which ensure crystal cohesion (Table 1 and Figure 2).