organic compounds
14-Hydroxy-8,14-secogammacera-7-ene-3,21-dione from the bark of Lansium domesticum Corr.
aDepartment of Chemistry, Faculty of Mathematics and Natural Sciences, Padjadjaran University, Jatinangor 45363, Indonesia, and bDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: seikweng@um.edu.my
In the title compound (kokosanolide B), C30H48O3, the hexahydro- and octahydronaphthalen-2-one ring systems are connected through an ethylene fragment, with a C—CH2—CH2—C torsion angle of 176.2 (2)°. The cyclohexene ring adopts a half-chair conformation, while the other six-membered rings adopt distorted chair conformations. In the crystal, adjacent molecules are linked into a zigzag chain along the b axis by O—H⋯O hydrogen bonds involving the hydroxy and carbonyl groups.
Related literature
For a related compound from the same species, see: Tjokronegero et al. (2009). For kokosanolide A, see: Mayanti et al. (2009).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536810021136/ci5095sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810021136/ci5095Isup2.hkl
Lansium domesticum Corr. (Meliaceae) was collected in Cililin, Bandung, Indonesia, in 2006. The plant was identified by the staff at Department of Biology, Padjadjaran University. The dried and milled bark of L. domesticum (3 kg) was extracted exhaustively by methanol at room temperature. The methanol extract (250 g) was partitioned between n-hexane and ethyl acetate to give an n-hexane soluble fraction (70 g) and an ethyl acetate soluble fraction (40 g). The ethyl acetate fraction was subjected to vacuum
on silica gel 60 by using a step gradient of n-hexane/ethyl acetate/methanol. The fraction eluted by n-hexane/ethyl acetate (80:20) was further separated by on silica gel n-hexane/ethyl acetate (95:5) and n-hexane/acetone (90:10). Single crystals were obtained by slow evaporation of the solvent.Carbon-bound H-atoms were placed in calculated positions [C—H = 0.95–1.00 Å] and were included in the
in the riding-model approximation, with Uiso(H) = 1.2–1.5U(C). The hydroxy H-atom was located in a difference Fourier map and was refined with a distance restraint of O–H = 0.84 (1) Å; its Uiso parameter was freely refined. 2721 Friedel pairs were mergedData collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).Fig. 1. Displacement ellipsoid plot (Barbour, 2001) of C30H48O3 at the 70% probability level. H atoms are drawn as spheres of arbitrary radius. |
C30H48O3 | F(000) = 1008 |
Mr = 456.68 | Dx = 1.127 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 3379 reflections |
a = 11.8841 (11) Å | θ = 2.6–20.6° |
b = 14.8301 (13) Å | µ = 0.07 mm−1 |
c = 15.2755 (13) Å | T = 100 K |
V = 2692.2 (4) Å3 | Plate, colourless |
Z = 4 | 0.20 × 0.10 × 0.05 mm |
Bruker SMART APEXII diffractometer | 3033 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.067 |
Graphite monochromator | θmax = 27.5°, θmin = 1.9° |
ω scans | h = −15→15 |
26171 measured reflections | k = −17→19 |
3469 independent reflections | l = −19→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.039 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.098 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | w = 1/[σ2(Fo2) + (0.0534P)2 + 0.4471P] where P = (Fo2 + 2Fc2)/3 |
3469 reflections | (Δ/σ)max = 0.001 |
310 parameters | Δρmax = 0.25 e Å−3 |
1 restraint | Δρmin = −0.20 e Å−3 |
C30H48O3 | V = 2692.2 (4) Å3 |
Mr = 456.68 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 11.8841 (11) Å | µ = 0.07 mm−1 |
b = 14.8301 (13) Å | T = 100 K |
c = 15.2755 (13) Å | 0.20 × 0.10 × 0.05 mm |
Bruker SMART APEXII diffractometer | 3033 reflections with I > 2σ(I) |
26171 measured reflections | Rint = 0.067 |
3469 independent reflections |
R[F2 > 2σ(F2)] = 0.039 | 1 restraint |
wR(F2) = 0.098 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.01 | Δρmax = 0.25 e Å−3 |
3469 reflections | Δρmin = −0.20 e Å−3 |
310 parameters |
x | y | z | Uiso*/Ueq | ||
O1 | 0.85660 (14) | 0.46079 (11) | 1.07799 (11) | 0.0313 (4) | |
O2 | 0.92757 (12) | 0.95328 (10) | 1.00483 (10) | 0.0193 (3) | |
H2 | 0.956 (2) | 0.9990 (13) | 1.0283 (17) | 0.044 (9)* | |
O3 | 0.97661 (13) | 0.62965 (10) | 0.44013 (10) | 0.0230 (3) | |
C1 | 1.00012 (16) | 0.70418 (13) | 0.99742 (13) | 0.0139 (4) | |
C2 | 0.94385 (17) | 0.63545 (13) | 0.93607 (13) | 0.0171 (4) | |
H2A | 0.8627 | 0.6497 | 0.9315 | 0.021* | |
H2B | 0.9770 | 0.6414 | 0.8769 | 0.021* | |
C3 | 0.95721 (19) | 0.53755 (14) | 0.96705 (14) | 0.0205 (5) | |
H3A | 0.9141 | 0.4974 | 0.9276 | 0.025* | |
H3B | 1.0375 | 0.5202 | 0.9632 | 0.025* | |
C4 | 0.91696 (17) | 0.52388 (14) | 1.05964 (15) | 0.0190 (4) | |
C5 | 0.95844 (18) | 0.59017 (14) | 1.12907 (14) | 0.0188 (4) | |
C6 | 0.95358 (17) | 0.68799 (13) | 1.09158 (13) | 0.0155 (4) | |
H6 | 0.8714 | 0.7017 | 1.0870 | 0.019* | |
C7 | 1.07759 (19) | 0.55946 (15) | 1.15649 (15) | 0.0234 (5) | |
H7A | 1.0735 | 0.4990 | 1.1822 | 0.035* | |
H7B | 1.1081 | 0.6017 | 1.1997 | 0.035* | |
H7C | 1.1267 | 0.5582 | 1.1049 | 0.035* | |
C8 | 0.8817 (2) | 0.58287 (17) | 1.20997 (15) | 0.0296 (5) | |
H8A | 0.8724 | 0.5193 | 1.2259 | 0.044* | |
H8B | 0.8080 | 0.6091 | 1.1965 | 0.044* | |
H8C | 0.9158 | 0.6156 | 1.2590 | 0.044* | |
C9 | 1.12928 (17) | 0.69324 (14) | 0.98960 (14) | 0.0185 (4) | |
H9A | 1.1478 | 0.6293 | 0.9820 | 0.028* | |
H9B | 1.1653 | 0.7160 | 1.0429 | 0.028* | |
H9C | 1.1565 | 0.7275 | 0.9390 | 0.028* | |
C10 | 0.99922 (19) | 0.75933 (14) | 1.15478 (13) | 0.0199 (4) | |
H10A | 0.9721 | 0.7465 | 1.2148 | 0.024* | |
H10B | 1.0825 | 0.7571 | 1.1553 | 0.024* | |
C11 | 0.96049 (19) | 0.85294 (14) | 1.12704 (14) | 0.0204 (4) | |
H11A | 0.9925 | 0.8980 | 1.1679 | 0.025* | |
H11B | 0.8775 | 0.8561 | 1.1318 | 0.025* | |
C12 | 0.99487 (18) | 0.87777 (13) | 1.03345 (13) | 0.0162 (4) | |
C13 | 0.96039 (16) | 0.80090 (13) | 0.97016 (12) | 0.0133 (4) | |
H13 | 0.8765 | 0.7983 | 0.9749 | 0.016* | |
C14 | 1.11914 (18) | 0.90456 (14) | 1.03022 (15) | 0.0212 (5) | |
H14A | 1.1428 | 0.9110 | 0.9691 | 0.032* | |
H14B | 1.1645 | 0.8578 | 1.0587 | 0.032* | |
H14C | 1.1296 | 0.9620 | 1.0608 | 0.032* | |
C15 | 0.98231 (16) | 0.82616 (14) | 0.87297 (13) | 0.0160 (4) | |
H15A | 1.0086 | 0.8894 | 0.8698 | 0.019* | |
H15B | 1.0428 | 0.7872 | 0.8495 | 0.019* | |
C16 | 0.87697 (17) | 0.81557 (14) | 0.81600 (13) | 0.0159 (4) | |
H16A | 0.8152 | 0.8511 | 0.8425 | 0.019* | |
H16B | 0.8539 | 0.7514 | 0.8166 | 0.019* | |
C17 | 0.89186 (16) | 0.84596 (14) | 0.71915 (12) | 0.0152 (4) | |
H17 | 0.9747 | 0.8520 | 0.7092 | 0.018* | |
C18 | 0.84100 (17) | 0.93890 (14) | 0.70231 (13) | 0.0168 (4) | |
C19 | 0.78520 (18) | 0.95775 (14) | 0.62919 (14) | 0.0184 (4) | |
H19 | 0.7511 | 1.0155 | 0.6245 | 0.022* | |
C20 | 0.77245 (18) | 0.89399 (14) | 0.55361 (13) | 0.0178 (4) | |
H20A | 0.7846 | 0.9270 | 0.4981 | 0.021* | |
H20B | 0.6950 | 0.8694 | 0.5530 | 0.021* | |
C21 | 0.85675 (16) | 0.81635 (13) | 0.56021 (13) | 0.0138 (4) | |
H21 | 0.9325 | 0.8456 | 0.5579 | 0.017* | |
C22 | 0.84927 (16) | 0.77380 (13) | 0.65296 (13) | 0.0133 (4) | |
C23 | 0.8624 (2) | 1.01122 (15) | 0.76957 (15) | 0.0237 (5) | |
H23A | 0.8226 | 1.0664 | 0.7527 | 0.036* | |
H23B | 0.9434 | 1.0234 | 0.7729 | 0.036* | |
H23C | 0.8353 | 0.9909 | 0.8268 | 0.036* | |
C24 | 0.72842 (17) | 0.74445 (14) | 0.67586 (13) | 0.0165 (4) | |
H24A | 0.7286 | 0.7126 | 0.7321 | 0.025* | |
H24B | 0.6998 | 0.7043 | 0.6300 | 0.025* | |
H24C | 0.6801 | 0.7978 | 0.6801 | 0.025* | |
C25 | 0.92925 (17) | 0.69270 (14) | 0.65756 (13) | 0.0171 (4) | |
H25A | 1.0077 | 0.7143 | 0.6521 | 0.021* | |
H25B | 0.9214 | 0.6635 | 0.7155 | 0.021* | |
C26 | 0.90659 (19) | 0.62292 (14) | 0.58610 (13) | 0.0194 (4) | |
H26A | 0.9602 | 0.5722 | 0.5922 | 0.023* | |
H26B | 0.8295 | 0.5987 | 0.5929 | 0.023* | |
C27 | 0.91895 (17) | 0.66457 (14) | 0.49686 (13) | 0.0166 (4) | |
C28 | 0.85347 (18) | 0.75171 (14) | 0.47911 (12) | 0.0163 (4) | |
C29 | 0.73416 (19) | 0.72086 (16) | 0.45128 (14) | 0.0226 (5) | |
H29A | 0.7391 | 0.6859 | 0.3970 | 0.034* | |
H29B | 0.6865 | 0.7739 | 0.4418 | 0.034* | |
H29C | 0.7014 | 0.6833 | 0.4975 | 0.034* | |
C30 | 0.9062 (2) | 0.80059 (15) | 0.40058 (14) | 0.0240 (5) | |
H30A | 0.9083 | 0.7598 | 0.3501 | 0.036* | |
H30B | 0.9830 | 0.8193 | 0.4154 | 0.036* | |
H30C | 0.8611 | 0.8538 | 0.3861 | 0.036* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0368 (9) | 0.0232 (9) | 0.0339 (10) | −0.0136 (8) | −0.0019 (8) | 0.0039 (7) |
O2 | 0.0229 (8) | 0.0134 (7) | 0.0215 (8) | 0.0024 (6) | −0.0014 (6) | −0.0003 (6) |
O3 | 0.0264 (8) | 0.0221 (8) | 0.0205 (8) | 0.0031 (7) | 0.0032 (7) | −0.0024 (7) |
C1 | 0.0152 (9) | 0.0139 (10) | 0.0125 (9) | −0.0004 (8) | 0.0005 (8) | −0.0016 (8) |
C2 | 0.0207 (9) | 0.0159 (10) | 0.0148 (10) | −0.0006 (8) | −0.0008 (8) | −0.0018 (8) |
C3 | 0.0266 (11) | 0.0153 (10) | 0.0195 (10) | −0.0006 (9) | −0.0009 (9) | −0.0049 (8) |
C4 | 0.0173 (9) | 0.0163 (10) | 0.0234 (11) | 0.0010 (8) | −0.0042 (9) | 0.0012 (9) |
C5 | 0.0233 (11) | 0.0160 (10) | 0.0171 (10) | 0.0011 (8) | 0.0001 (9) | 0.0032 (8) |
C6 | 0.0175 (9) | 0.0147 (9) | 0.0142 (9) | 0.0007 (8) | −0.0008 (8) | 0.0004 (8) |
C7 | 0.0302 (11) | 0.0168 (10) | 0.0232 (11) | 0.0001 (10) | −0.0095 (10) | 0.0006 (9) |
C8 | 0.0416 (14) | 0.0241 (12) | 0.0230 (12) | −0.0026 (11) | 0.0101 (11) | 0.0047 (10) |
C9 | 0.0168 (9) | 0.0185 (10) | 0.0203 (10) | 0.0013 (8) | −0.0009 (8) | −0.0004 (9) |
C10 | 0.0282 (11) | 0.0168 (10) | 0.0146 (10) | −0.0029 (9) | −0.0019 (9) | −0.0017 (8) |
C11 | 0.0296 (11) | 0.0157 (10) | 0.0160 (10) | 0.0018 (9) | 0.0005 (9) | −0.0032 (8) |
C12 | 0.0198 (10) | 0.0129 (10) | 0.0159 (10) | 0.0022 (8) | −0.0011 (8) | −0.0004 (8) |
C13 | 0.0138 (9) | 0.0137 (10) | 0.0124 (9) | −0.0008 (8) | −0.0008 (7) | −0.0006 (8) |
C14 | 0.0209 (10) | 0.0169 (10) | 0.0257 (11) | −0.0029 (8) | −0.0066 (9) | −0.0010 (9) |
C15 | 0.0152 (9) | 0.0181 (10) | 0.0146 (10) | −0.0016 (8) | 0.0006 (8) | 0.0010 (8) |
C16 | 0.0172 (9) | 0.0155 (10) | 0.0149 (9) | −0.0016 (8) | −0.0004 (8) | 0.0004 (8) |
C17 | 0.0159 (9) | 0.0158 (10) | 0.0139 (9) | −0.0008 (8) | −0.0003 (8) | 0.0015 (8) |
C18 | 0.0189 (9) | 0.0133 (10) | 0.0182 (10) | −0.0013 (8) | 0.0041 (8) | −0.0009 (8) |
C19 | 0.0211 (10) | 0.0134 (10) | 0.0208 (11) | 0.0027 (8) | 0.0032 (8) | −0.0002 (8) |
C20 | 0.0224 (10) | 0.0163 (10) | 0.0146 (10) | 0.0029 (8) | −0.0013 (8) | −0.0003 (8) |
C21 | 0.0151 (9) | 0.0136 (10) | 0.0128 (9) | −0.0013 (8) | 0.0005 (8) | 0.0002 (8) |
C22 | 0.0135 (9) | 0.0124 (9) | 0.0140 (9) | −0.0002 (7) | −0.0005 (8) | 0.0003 (8) |
C23 | 0.0336 (12) | 0.0156 (11) | 0.0220 (11) | −0.0013 (9) | −0.0010 (10) | −0.0029 (9) |
C24 | 0.0182 (9) | 0.0184 (10) | 0.0129 (9) | −0.0033 (8) | 0.0015 (8) | 0.0001 (8) |
C25 | 0.0198 (10) | 0.0181 (10) | 0.0134 (9) | 0.0022 (8) | −0.0005 (8) | 0.0009 (8) |
C26 | 0.0264 (11) | 0.0133 (10) | 0.0187 (11) | 0.0031 (9) | 0.0011 (9) | 0.0011 (8) |
C27 | 0.0182 (9) | 0.0150 (10) | 0.0166 (10) | −0.0030 (8) | 0.0001 (8) | −0.0031 (8) |
C28 | 0.0198 (10) | 0.0161 (10) | 0.0130 (10) | −0.0006 (8) | 0.0009 (8) | −0.0001 (8) |
C29 | 0.0249 (11) | 0.0232 (11) | 0.0195 (11) | −0.0003 (9) | −0.0051 (9) | −0.0027 (9) |
C30 | 0.0366 (12) | 0.0191 (11) | 0.0164 (10) | −0.0002 (10) | 0.0065 (9) | 0.0010 (9) |
O1—C4 | 1.212 (3) | C15—C16 | 1.533 (3) |
O2—C12 | 1.444 (2) | C15—H15A | 0.99 |
O2—H2 | 0.841 (10) | C15—H15B | 0.99 |
O3—C27 | 1.220 (2) | C16—C17 | 1.557 (3) |
C1—C2 | 1.538 (3) | C16—H16A | 0.99 |
C1—C9 | 1.548 (3) | C16—H16B | 0.99 |
C1—C6 | 1.560 (3) | C17—C18 | 1.527 (3) |
C1—C13 | 1.566 (3) | C17—C22 | 1.557 (3) |
C2—C3 | 1.535 (3) | C17—H17 | 1.00 |
C2—H2A | 0.99 | C18—C19 | 1.329 (3) |
C2—H2B | 0.99 | C18—C23 | 1.507 (3) |
C3—C4 | 1.507 (3) | C19—C20 | 1.500 (3) |
C3—H3A | 0.99 | C19—H19 | 0.95 |
C3—H3B | 0.99 | C20—C21 | 1.530 (3) |
C4—C5 | 1.528 (3) | C20—H20A | 0.99 |
C5—C8 | 1.540 (3) | C20—H20B | 0.99 |
C5—C7 | 1.545 (3) | C21—C22 | 1.553 (3) |
C5—C6 | 1.561 (3) | C21—C28 | 1.567 (3) |
C6—C10 | 1.531 (3) | C21—H21 | 1.00 |
C6—H6 | 1.00 | C22—C25 | 1.535 (3) |
C7—H7A | 0.98 | C22—C24 | 1.541 (3) |
C7—H7B | 0.98 | C23—H23A | 0.98 |
C7—H7C | 0.98 | C23—H23B | 0.98 |
C8—H8A | 0.98 | C23—H23C | 0.98 |
C8—H8B | 0.98 | C24—H24A | 0.98 |
C8—H8C | 0.98 | C24—H24B | 0.98 |
C9—H9A | 0.98 | C24—H24C | 0.98 |
C9—H9B | 0.98 | C25—C26 | 1.528 (3) |
C9—H9C | 0.98 | C25—H25A | 0.99 |
C10—C11 | 1.523 (3) | C25—H25B | 0.99 |
C10—H10A | 0.99 | C26—C27 | 1.504 (3) |
C10—H10B | 0.99 | C26—H26A | 0.99 |
C11—C12 | 1.532 (3) | C26—H26B | 0.99 |
C11—H11A | 0.99 | C27—C28 | 1.533 (3) |
C11—H11B | 0.99 | C28—C30 | 1.535 (3) |
C12—C14 | 1.530 (3) | C28—C29 | 1.549 (3) |
C12—C13 | 1.550 (3) | C29—H29A | 0.98 |
C13—C15 | 1.553 (3) | C29—H29B | 0.98 |
C13—H13 | 1.00 | C29—H29C | 0.98 |
C14—H14A | 0.98 | C30—H30A | 0.98 |
C14—H14B | 0.98 | C30—H30B | 0.98 |
C14—H14C | 0.98 | C30—H30C | 0.98 |
C12—O2—H2 | 106 (2) | C16—C15—H15B | 109.1 |
C2—C1—C9 | 108.35 (16) | C13—C15—H15B | 109.1 |
C2—C1—C6 | 107.81 (16) | H15A—C15—H15B | 107.9 |
C9—C1—C6 | 113.99 (17) | C15—C16—C17 | 114.65 (16) |
C2—C1—C13 | 108.29 (16) | C15—C16—H16A | 108.6 |
C9—C1—C13 | 111.98 (16) | C17—C16—H16A | 108.6 |
C6—C1—C13 | 106.21 (15) | C15—C16—H16B | 108.6 |
C3—C2—C1 | 113.21 (17) | C17—C16—H16B | 108.6 |
C3—C2—H2A | 108.9 | H16A—C16—H16B | 107.6 |
C1—C2—H2A | 108.9 | C18—C17—C22 | 112.49 (16) |
C3—C2—H2B | 108.9 | C18—C17—C16 | 112.11 (16) |
C1—C2—H2B | 108.9 | C22—C17—C16 | 112.41 (16) |
H2A—C2—H2B | 107.8 | C18—C17—H17 | 106.4 |
C4—C3—C2 | 112.56 (18) | C22—C17—H17 | 106.4 |
C4—C3—H3A | 109.1 | C16—C17—H17 | 106.4 |
C2—C3—H3A | 109.1 | C19—C18—C23 | 120.51 (19) |
C4—C3—H3B | 109.1 | C19—C18—C17 | 121.94 (19) |
C2—C3—H3B | 109.1 | C23—C18—C17 | 117.44 (18) |
H3A—C3—H3B | 107.8 | C18—C19—C20 | 124.39 (19) |
O1—C4—C3 | 120.6 (2) | C18—C19—H19 | 117.8 |
O1—C4—C5 | 121.8 (2) | C20—C19—H19 | 117.8 |
C3—C4—C5 | 117.56 (18) | C19—C20—C21 | 110.95 (17) |
C4—C5—C8 | 108.71 (18) | C19—C20—H20A | 109.4 |
C4—C5—C7 | 107.11 (17) | C21—C20—H20A | 109.4 |
C8—C5—C7 | 107.74 (18) | C19—C20—H20B | 109.4 |
C4—C5—C6 | 109.35 (17) | C21—C20—H20B | 109.4 |
C8—C5—C6 | 109.75 (18) | H20A—C20—H20B | 108.0 |
C7—C5—C6 | 114.03 (18) | C20—C21—C22 | 109.17 (16) |
C10—C6—C1 | 110.45 (16) | C20—C21—C28 | 113.08 (16) |
C10—C6—C5 | 113.44 (17) | C22—C21—C28 | 118.11 (16) |
C1—C6—C5 | 117.93 (17) | C20—C21—H21 | 105.1 |
C10—C6—H6 | 104.5 | C22—C21—H21 | 105.1 |
C1—C6—H6 | 104.5 | C28—C21—H21 | 105.1 |
C5—C6—H6 | 104.5 | C25—C22—C24 | 110.21 (16) |
C5—C7—H7A | 109.5 | C25—C22—C21 | 108.94 (16) |
C5—C7—H7B | 109.5 | C24—C22—C21 | 112.03 (16) |
H7A—C7—H7B | 109.5 | C25—C22—C17 | 107.92 (16) |
C5—C7—H7C | 109.5 | C24—C22—C17 | 110.47 (16) |
H7A—C7—H7C | 109.5 | C21—C22—C17 | 107.13 (15) |
H7B—C7—H7C | 109.5 | C18—C23—H23A | 109.5 |
C5—C8—H8A | 109.5 | C18—C23—H23B | 109.5 |
C5—C8—H8B | 109.5 | H23A—C23—H23B | 109.5 |
H8A—C8—H8B | 109.5 | C18—C23—H23C | 109.5 |
C5—C8—H8C | 109.5 | H23A—C23—H23C | 109.5 |
H8A—C8—H8C | 109.5 | H23B—C23—H23C | 109.5 |
H8B—C8—H8C | 109.5 | C22—C24—H24A | 109.5 |
C1—C9—H9A | 109.5 | C22—C24—H24B | 109.5 |
C1—C9—H9B | 109.5 | H24A—C24—H24B | 109.5 |
H9A—C9—H9B | 109.5 | C22—C24—H24C | 109.5 |
C1—C9—H9C | 109.5 | H24A—C24—H24C | 109.5 |
H9A—C9—H9C | 109.5 | H24B—C24—H24C | 109.5 |
H9B—C9—H9C | 109.5 | C26—C25—C22 | 112.89 (16) |
C11—C10—C6 | 110.33 (17) | C26—C25—H25A | 109.0 |
C11—C10—H10A | 109.6 | C22—C25—H25A | 109.0 |
C6—C10—H10A | 109.6 | C26—C25—H25B | 109.0 |
C11—C10—H10B | 109.6 | C22—C25—H25B | 109.0 |
C6—C10—H10B | 109.6 | H25A—C25—H25B | 107.8 |
H10A—C10—H10B | 108.1 | C27—C26—C25 | 110.62 (16) |
C10—C11—C12 | 113.46 (17) | C27—C26—H26A | 109.5 |
C10—C11—H11A | 108.9 | C25—C26—H26A | 109.5 |
C12—C11—H11A | 108.9 | C27—C26—H26B | 109.5 |
C10—C11—H11B | 108.9 | C25—C26—H26B | 109.5 |
C12—C11—H11B | 108.9 | H26A—C26—H26B | 108.1 |
H11A—C11—H11B | 107.7 | O3—C27—C26 | 121.62 (19) |
O2—C12—C14 | 108.86 (16) | O3—C27—C28 | 121.16 (18) |
O2—C12—C11 | 108.74 (17) | C26—C27—C28 | 117.20 (17) |
C14—C12—C11 | 110.49 (18) | C27—C28—C30 | 109.20 (17) |
O2—C12—C13 | 103.60 (15) | C27—C28—C29 | 105.32 (17) |
C14—C12—C13 | 115.21 (17) | C30—C28—C29 | 107.38 (17) |
C11—C12—C13 | 109.57 (16) | C27—C28—C21 | 111.30 (16) |
C12—C13—C15 | 112.00 (16) | C30—C28—C21 | 108.59 (16) |
C12—C13—C1 | 115.34 (16) | C29—C28—C21 | 114.86 (17) |
C15—C13—C1 | 115.11 (16) | C28—C29—H29A | 109.5 |
C12—C13—H13 | 104.2 | C28—C29—H29B | 109.5 |
C15—C13—H13 | 104.2 | H29A—C29—H29B | 109.5 |
C1—C13—H13 | 104.2 | C28—C29—H29C | 109.5 |
C12—C14—H14A | 109.5 | H29A—C29—H29C | 109.5 |
C12—C14—H14B | 109.5 | H29B—C29—H29C | 109.5 |
H14A—C14—H14B | 109.5 | C28—C30—H30A | 109.5 |
C12—C14—H14C | 109.5 | C28—C30—H30B | 109.5 |
H14A—C14—H14C | 109.5 | H30A—C30—H30B | 109.5 |
H14B—C14—H14C | 109.5 | C28—C30—H30C | 109.5 |
C16—C15—C13 | 112.40 (16) | H30A—C30—H30C | 109.5 |
C16—C15—H15A | 109.1 | H30B—C30—H30C | 109.5 |
C13—C15—H15A | 109.1 | ||
C9—C1—C2—C3 | 69.8 (2) | C1—C13—C15—C16 | 99.7 (2) |
C6—C1—C2—C3 | −54.1 (2) | C13—C15—C16—C17 | 176.18 (17) |
C13—C1—C2—C3 | −168.58 (17) | C15—C16—C17—C18 | −101.6 (2) |
C1—C2—C3—C4 | 54.2 (2) | C15—C16—C17—C22 | 130.50 (18) |
C2—C3—C4—O1 | 133.3 (2) | C22—C17—C18—C19 | −12.3 (3) |
C2—C3—C4—C5 | −48.9 (3) | C16—C17—C18—C19 | −140.2 (2) |
O1—C4—C5—C8 | −19.3 (3) | C22—C17—C18—C23 | 171.38 (17) |
C3—C4—C5—C8 | 162.88 (19) | C16—C17—C18—C23 | 43.5 (2) |
O1—C4—C5—C7 | 96.9 (2) | C23—C18—C19—C20 | 171.8 (2) |
C3—C4—C5—C7 | −81.0 (2) | C17—C18—C19—C20 | −4.3 (3) |
O1—C4—C5—C6 | −139.1 (2) | C18—C19—C20—C21 | −15.5 (3) |
C3—C4—C5—C6 | 43.1 (2) | C19—C20—C21—C22 | 50.8 (2) |
C2—C1—C6—C10 | −175.45 (16) | C19—C20—C21—C28 | −175.54 (17) |
C9—C1—C6—C10 | 64.2 (2) | C20—C21—C22—C25 | 176.90 (16) |
C13—C1—C6—C10 | −59.6 (2) | C28—C21—C22—C25 | 45.9 (2) |
C2—C1—C6—C5 | 51.8 (2) | C20—C21—C22—C24 | 54.7 (2) |
C9—C1—C6—C5 | −68.5 (2) | C28—C21—C22—C24 | −76.3 (2) |
C13—C1—C6—C5 | 167.74 (17) | C20—C21—C22—C17 | −66.60 (19) |
C4—C5—C6—C10 | −177.08 (17) | C28—C21—C22—C17 | 162.38 (16) |
C8—C5—C6—C10 | 63.8 (2) | C18—C17—C22—C25 | 163.45 (16) |
C7—C5—C6—C10 | −57.2 (2) | C16—C17—C22—C25 | −68.9 (2) |
C4—C5—C6—C1 | −45.7 (2) | C18—C17—C22—C24 | −76.0 (2) |
C8—C5—C6—C1 | −164.88 (18) | C16—C17—C22—C24 | 51.7 (2) |
C7—C5—C6—C1 | 74.2 (2) | C18—C17—C22—C21 | 46.3 (2) |
C1—C6—C10—C11 | 62.1 (2) | C16—C17—C22—C21 | 173.97 (15) |
C5—C6—C10—C11 | −162.95 (18) | C24—C22—C25—C26 | 67.7 (2) |
C6—C10—C11—C12 | −57.2 (2) | C21—C22—C25—C26 | −55.6 (2) |
C10—C11—C12—O2 | 163.03 (17) | C17—C22—C25—C26 | −171.57 (16) |
C10—C11—C12—C14 | −77.5 (2) | C22—C25—C26—C27 | 59.3 (2) |
C10—C11—C12—C13 | 50.4 (2) | C25—C26—C27—O3 | 129.9 (2) |
O2—C12—C13—C15 | 58.4 (2) | C25—C26—C27—C28 | −51.7 (2) |
C14—C12—C13—C15 | −60.4 (2) | O3—C27—C28—C30 | −21.1 (3) |
C11—C12—C13—C15 | 174.34 (16) | C26—C27—C28—C30 | 160.48 (18) |
O2—C12—C13—C1 | −167.31 (16) | O3—C27—C28—C29 | 94.0 (2) |
C14—C12—C13—C1 | 73.9 (2) | C26—C27—C28—C29 | −84.5 (2) |
C11—C12—C13—C1 | −51.4 (2) | O3—C27—C28—C21 | −140.96 (19) |
C2—C1—C13—C12 | 171.36 (16) | C26—C27—C28—C21 | 40.6 (2) |
C9—C1—C13—C12 | −69.2 (2) | C20—C21—C28—C27 | −167.41 (17) |
C6—C1—C13—C12 | 55.8 (2) | C22—C21—C28—C27 | −38.2 (2) |
C2—C1—C13—C15 | −55.8 (2) | C20—C21—C28—C30 | 72.3 (2) |
C9—C1—C13—C15 | 63.6 (2) | C22—C21—C28—C30 | −158.42 (17) |
C6—C1—C13—C15 | −171.39 (16) | C20—C21—C28—C29 | −47.9 (2) |
C12—C13—C15—C16 | −125.90 (18) | C22—C21—C28—C29 | 81.4 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O3i | 0.84 (1) | 2.15 (1) | 2.974 (2) | 167 (3) |
Symmetry code: (i) −x+2, y+1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C30H48O3 |
Mr | 456.68 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 100 |
a, b, c (Å) | 11.8841 (11), 14.8301 (13), 15.2755 (13) |
V (Å3) | 2692.2 (4) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.07 |
Crystal size (mm) | 0.20 × 0.10 × 0.05 |
Data collection | |
Diffractometer | Bruker SMART APEXII diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26171, 3469, 3033 |
Rint | 0.067 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.039, 0.098, 1.01 |
No. of reflections | 3469 |
No. of parameters | 310 |
No. of restraints | 1 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.25, −0.20 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H2···O3i | 0.84 (1) | 2.15 (1) | 2.974 (2) | 167 (3) |
Symmetry code: (i) −x+2, y+1/2, −z+3/2. |
Acknowledgements
This work was supported by the Directorate of Higher Education, Indonesia, the University of Padjadjaran (I-MHERE Project) and the University of Malaya (UMRG RG011/09BIO).
References
Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191. CrossRef CAS Google Scholar
Bruker (2009). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Mayanti, T., Supratman, U., Mukhtar, M. R., Awang, K. & Ng, S. W. (2009). Acta Cryst. E65, o750. Web of Science CSD CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Tjokronegero, R., Mayanti, T., Supratman, U., Mukhtar, M. R. & Ng, S. W. (2009). Acta Cryst. E65, o1448. Web of Science CSD CrossRef IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43. Submitted. Google Scholar
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A previous study on the bark of Lansium domesticum Corr (Meliaceae) yielded a co-crystal, 8,14-secogammacera-7,14 (27)-diene–3,21-dione-8,14-secogammacera-7,14-diene-3,21-dione (1.5/0.5). The major component has an excocyclic double bond and an endocyclic double bond (Tjokronegero et al., 2009). In the present compound (Scheme I), a molecule of water has been added across the endocyclic double bond to furnish the corresponding alcohol (Fig. 1).
The hexahydro-naphthalen-2-one and octahydro-naphthalen-2-one ring systems are connected through an ethylene fragment, with a C–CH2–CH2–C torsion angle of 176.2 (2)°. The hydroxy unit of one fused-ring forms a hydrogen bond to the ketonic unit of the other fused-ring of an adjacent molecule to generate a zigzag chain.