organic compounds
Methyl 2,6-bis[(5-chloro-4,6-dimethoxypyrimidin-2-yl)oxy]benzoate
aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bDepartment of Chemistry, Manipal Institute of Technology, Manipal University, Manipal 576 104, India, cOrganic Chemistry Division, Department of Chemistry, National Institute of Technology-Karnataka, Surathkal, Mangalore 575 025, India, and dDepartment of Printing, Manipal Institute of Technology, Manipal University, Manipal 576 104, India
*Correspondence e-mail: hkfun@usm.my
In the title compound, C20H18Cl2N4O8, the two pyrimidine rings are inclined at dihedral angles of 66.68 (5) and 71.91 (6)° with respect to the central benzene ring. In the intermolecular C—H⋯N hydrogen bonds link neighbouring molecules into a ribbon-like structure along the b axis. The ribbons are interconnected into a two-dimensional network parallel to the bc plane by short intermolecular Cl⋯Cl [3.4427 (6) Å] and Cl⋯O [3.1420 (9) and 3.1750 (11) Å] interactions. The is further stabilized by intermolecular π–π interactions [centroid–centroid distance 3.4552 (8) Å] involving the pyrimidine rings.
Related literature
For general background to and applications of the title compound, see: Koichiro et al. (1988, 1998); He et al. (2007); Li et al. (2006); Gerorge (1983). For graph-set descriptions of hydrogen-bonded ring motifs, see: Bernstein et al. (1995). For a closely related structure, see: Li & Luo (2006). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536810024785/ci5115sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810024785/ci5115Isup2.hkl
To a stirred solution of methyl-2,6-dihydroxybenzoate (0.50 g, 0.0026 mol) in acetonitrile (10 ml) was added potassium carbonate (1.00 g, 0.0070 mol) and 5-chloro-4,6-dimethoxy-2-(methylsulfonyl)pyrimidine (1.58 g, 0.0050 mol). The reaction mixture was heated to reflux for 4 h.
showed completion of the reaction. The reaction mixture was filtered and the filtrate was concentrated. The residue was recrystallized using dichloromethane to obtain the title compound (yield: 67 %, m.p. 427–430 K).All H atoms were placed in the calculated positions, with C–H = 0.93–0.96 Å, and refined using a riding model with Uiso = 1.2 or 1.5 Ueq(C). The rotating group model was used for the methyl groups.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C20H18Cl2N4O8 | F(000) = 2112 |
Mr = 513.28 | Dx = 1.523 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 9948 reflections |
a = 29.354 (3) Å | θ = 2.7–32.6° |
b = 8.0485 (8) Å | µ = 0.35 mm−1 |
c = 22.5923 (19) Å | T = 100 K |
β = 123.014 (2)° | Block, colourless |
V = 4475.7 (7) Å3 | 0.58 × 0.31 × 0.16 mm |
Z = 8 |
Bruker APEXII DUO CCD area-detector diffractometer | 8040 independent reflections |
Radiation source: fine-focus sealed tube | 6824 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
ϕ and ω scans | θmax = 32.6°, θmin = 1.7° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −44→43 |
Tmin = 0.825, Tmax = 0.948 | k = −12→12 |
22170 measured reflections | l = −34→34 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.040 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.129 | H-atom parameters constrained |
S = 1.08 | w = 1/[σ2(Fo2) + (0.0781P)2 + 1.9869P] where P = (Fo2 + 2Fc2)/3 |
8040 reflections | (Δ/σ)max = 0.001 |
312 parameters | Δρmax = 0.71 e Å−3 |
0 restraints | Δρmin = −0.55 e Å−3 |
C20H18Cl2N4O8 | V = 4475.7 (7) Å3 |
Mr = 513.28 | Z = 8 |
Monoclinic, C2/c | Mo Kα radiation |
a = 29.354 (3) Å | µ = 0.35 mm−1 |
b = 8.0485 (8) Å | T = 100 K |
c = 22.5923 (19) Å | 0.58 × 0.31 × 0.16 mm |
β = 123.014 (2)° |
Bruker APEXII DUO CCD area-detector diffractometer | 8040 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 6824 reflections with I > 2σ(I) |
Tmin = 0.825, Tmax = 0.948 | Rint = 0.023 |
22170 measured reflections |
R[F2 > 2σ(F2)] = 0.040 | 0 restraints |
wR(F2) = 0.129 | H-atom parameters constrained |
S = 1.08 | Δρmax = 0.71 e Å−3 |
8040 reflections | Δρmin = −0.55 e Å−3 |
312 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1 | 0.307309 (11) | 0.57598 (4) | 0.096234 (18) | 0.02454 (8) | |
Cl2 | 0.082300 (12) | 0.91419 (4) | 0.399331 (14) | 0.01982 (8) | |
O1 | 0.11797 (3) | 0.91625 (11) | 0.04367 (4) | 0.01529 (16) | |
O2 | 0.04987 (3) | 0.57525 (11) | 0.15715 (4) | 0.01615 (16) | |
O3 | 0.28912 (4) | 0.93539 (12) | 0.08837 (5) | 0.02288 (19) | |
O4 | 0.20796 (3) | 0.42435 (11) | 0.07368 (5) | 0.01987 (17) | |
O5 | 0.16660 (4) | 0.88991 (14) | 0.18631 (5) | 0.0263 (2) | |
O6 | 0.16179 (4) | 0.62171 (15) | 0.20959 (5) | 0.0296 (2) | |
O7 | 0.07442 (4) | 0.55550 (12) | 0.37357 (4) | 0.01848 (17) | |
O8 | 0.07019 (4) | 1.06655 (11) | 0.27317 (4) | 0.01907 (17) | |
N1 | 0.20277 (4) | 0.92889 (13) | 0.06785 (5) | 0.01634 (18) | |
N2 | 0.16079 (4) | 0.66706 (13) | 0.05757 (5) | 0.01477 (17) | |
N3 | 0.06228 (4) | 0.56256 (13) | 0.26376 (5) | 0.01535 (18) | |
N4 | 0.06122 (4) | 0.82430 (13) | 0.21320 (5) | 0.01471 (17) | |
C1 | 0.24667 (4) | 0.84915 (16) | 0.07879 (6) | 0.0167 (2) | |
C2 | 0.25047 (4) | 0.67647 (16) | 0.08112 (6) | 0.0171 (2) | |
C3 | 0.20559 (4) | 0.58939 (15) | 0.07043 (5) | 0.0152 (2) | |
C4 | 0.16281 (4) | 0.83107 (15) | 0.05732 (5) | 0.01390 (19) | |
C5 | 0.07753 (4) | 0.82779 (14) | 0.04464 (5) | 0.01343 (18) | |
C6 | 0.02637 (4) | 0.83115 (16) | −0.01690 (5) | 0.0172 (2) | |
H6A | 0.0207 | 0.8867 | −0.0565 | 0.021* | |
C7 | −0.01650 (4) | 0.75105 (17) | −0.01925 (6) | 0.0206 (2) | |
H7A | −0.0510 | 0.7533 | −0.0605 | 0.025* | |
C8 | −0.00804 (4) | 0.66766 (16) | 0.03972 (6) | 0.0179 (2) | |
H8A | −0.0366 | 0.6133 | 0.0382 | 0.022* | |
C9 | 0.04341 (4) | 0.66658 (15) | 0.10068 (5) | 0.01393 (18) | |
C10 | 0.08739 (4) | 0.74658 (14) | 0.10524 (5) | 0.01335 (18) | |
C11 | 0.05844 (4) | 0.66055 (15) | 0.21417 (5) | 0.01376 (18) | |
C12 | 0.06937 (4) | 0.64190 (16) | 0.32011 (5) | 0.01463 (19) | |
C13 | 0.07199 (4) | 0.81463 (15) | 0.32568 (5) | 0.01496 (19) | |
C14 | 0.06775 (4) | 0.90169 (15) | 0.26965 (5) | 0.01476 (19) | |
C15 | 0.28520 (6) | 1.11370 (19) | 0.08786 (9) | 0.0296 (3) | |
H15A | 0.3151 | 1.1619 | 0.0877 | 0.044* | |
H15B | 0.2863 | 1.1497 | 0.1291 | 0.044* | |
H15C | 0.2516 | 1.1484 | 0.0464 | 0.044* | |
C16 | 0.16177 (5) | 0.33858 (18) | 0.06581 (8) | 0.0262 (3) | |
H16A | 0.1695 | 0.2218 | 0.0735 | 0.039* | |
H16B | 0.1306 | 0.3562 | 0.0190 | 0.039* | |
H16C | 0.1545 | 0.3807 | 0.0997 | 0.039* | |
C17 | 0.14212 (4) | 0.74193 (17) | 0.17246 (6) | 0.0187 (2) | |
C18 | 0.22073 (7) | 0.8981 (3) | 0.24900 (9) | 0.0473 (5) | |
H18A | 0.2353 | 1.0076 | 0.2534 | 0.071* | |
H18B | 0.2435 | 0.8182 | 0.2456 | 0.071* | |
H18C | 0.2194 | 0.8740 | 0.2897 | 0.071* | |
C19 | 0.07186 (6) | 0.37652 (18) | 0.36714 (6) | 0.0226 (2) | |
H19A | 0.0735 | 0.3285 | 0.4072 | 0.034* | |
H19B | 0.1019 | 0.3373 | 0.3653 | 0.034* | |
H19C | 0.0384 | 0.3449 | 0.3247 | 0.034* | |
C20 | 0.07386 (7) | 1.15252 (18) | 0.21994 (7) | 0.0286 (3) | |
H20A | 0.0771 | 1.2698 | 0.2292 | 0.043* | |
H20B | 0.0418 | 1.1311 | 0.1743 | 0.043* | |
H20C | 0.1052 | 1.1140 | 0.2209 | 0.043* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1 | 0.01660 (12) | 0.02313 (16) | 0.03475 (16) | 0.00517 (10) | 0.01454 (11) | 0.00213 (12) |
Cl2 | 0.02636 (14) | 0.02056 (15) | 0.01647 (12) | −0.00313 (10) | 0.01420 (10) | −0.00502 (9) |
O1 | 0.0144 (3) | 0.0143 (4) | 0.0208 (3) | 0.0030 (3) | 0.0119 (3) | 0.0037 (3) |
O2 | 0.0246 (4) | 0.0139 (4) | 0.0150 (3) | −0.0023 (3) | 0.0141 (3) | −0.0023 (3) |
O3 | 0.0179 (4) | 0.0186 (4) | 0.0352 (5) | 0.0000 (3) | 0.0164 (3) | 0.0014 (4) |
O4 | 0.0170 (3) | 0.0131 (4) | 0.0280 (4) | 0.0012 (3) | 0.0113 (3) | −0.0011 (3) |
O5 | 0.0220 (4) | 0.0305 (5) | 0.0185 (4) | −0.0102 (4) | 0.0060 (3) | −0.0027 (4) |
O6 | 0.0222 (4) | 0.0338 (6) | 0.0234 (4) | 0.0043 (4) | 0.0064 (3) | 0.0104 (4) |
O7 | 0.0266 (4) | 0.0176 (4) | 0.0158 (3) | −0.0012 (3) | 0.0144 (3) | 0.0008 (3) |
O8 | 0.0267 (4) | 0.0131 (4) | 0.0175 (3) | 0.0004 (3) | 0.0121 (3) | −0.0015 (3) |
N1 | 0.0160 (4) | 0.0151 (5) | 0.0205 (4) | 0.0010 (3) | 0.0116 (3) | 0.0012 (3) |
N2 | 0.0148 (4) | 0.0142 (4) | 0.0162 (3) | 0.0020 (3) | 0.0090 (3) | 0.0003 (3) |
N3 | 0.0185 (4) | 0.0154 (5) | 0.0155 (4) | −0.0007 (3) | 0.0114 (3) | −0.0009 (3) |
N4 | 0.0179 (4) | 0.0139 (4) | 0.0139 (3) | 0.0006 (3) | 0.0097 (3) | −0.0008 (3) |
C1 | 0.0146 (4) | 0.0176 (5) | 0.0190 (4) | −0.0001 (4) | 0.0100 (3) | 0.0005 (4) |
C2 | 0.0141 (4) | 0.0174 (5) | 0.0206 (4) | 0.0033 (4) | 0.0100 (3) | 0.0008 (4) |
C3 | 0.0153 (4) | 0.0142 (5) | 0.0156 (4) | 0.0023 (4) | 0.0081 (3) | 0.0002 (4) |
C4 | 0.0135 (4) | 0.0156 (5) | 0.0140 (4) | 0.0023 (4) | 0.0083 (3) | 0.0011 (4) |
C5 | 0.0142 (4) | 0.0135 (5) | 0.0155 (4) | 0.0013 (4) | 0.0100 (3) | −0.0001 (4) |
C6 | 0.0165 (4) | 0.0212 (6) | 0.0144 (4) | 0.0016 (4) | 0.0088 (3) | 0.0019 (4) |
C7 | 0.0154 (4) | 0.0270 (7) | 0.0167 (4) | −0.0003 (4) | 0.0071 (3) | 0.0010 (4) |
C8 | 0.0162 (4) | 0.0211 (6) | 0.0182 (4) | −0.0024 (4) | 0.0105 (4) | −0.0020 (4) |
C9 | 0.0178 (4) | 0.0133 (5) | 0.0137 (4) | −0.0001 (4) | 0.0105 (3) | −0.0011 (4) |
C10 | 0.0144 (4) | 0.0136 (5) | 0.0130 (4) | 0.0007 (3) | 0.0081 (3) | −0.0009 (3) |
C11 | 0.0146 (4) | 0.0154 (5) | 0.0136 (4) | −0.0007 (4) | 0.0092 (3) | −0.0020 (4) |
C12 | 0.0146 (4) | 0.0177 (5) | 0.0135 (4) | −0.0005 (4) | 0.0089 (3) | 0.0000 (4) |
C13 | 0.0171 (4) | 0.0161 (5) | 0.0139 (4) | −0.0004 (4) | 0.0099 (3) | −0.0025 (4) |
C14 | 0.0153 (4) | 0.0142 (5) | 0.0149 (4) | 0.0006 (4) | 0.0083 (3) | −0.0013 (4) |
C15 | 0.0243 (6) | 0.0186 (6) | 0.0490 (8) | −0.0024 (5) | 0.0220 (6) | 0.0008 (6) |
C16 | 0.0207 (5) | 0.0153 (6) | 0.0407 (7) | −0.0013 (4) | 0.0155 (5) | −0.0015 (5) |
C17 | 0.0161 (4) | 0.0242 (6) | 0.0156 (4) | −0.0012 (4) | 0.0085 (3) | 0.0002 (4) |
C18 | 0.0290 (7) | 0.0602 (13) | 0.0281 (7) | −0.0201 (8) | −0.0003 (6) | −0.0017 (7) |
C19 | 0.0323 (6) | 0.0183 (6) | 0.0214 (5) | −0.0017 (5) | 0.0173 (4) | 0.0016 (5) |
C20 | 0.0497 (8) | 0.0162 (6) | 0.0220 (5) | 0.0018 (6) | 0.0209 (5) | 0.0020 (5) |
Cl1—C2 | 1.7126 (11) | C5—C6 | 1.3834 (14) |
Cl2—C13 | 1.7187 (11) | C5—C10 | 1.3978 (14) |
O1—C4 | 1.3621 (12) | C6—C7 | 1.3889 (16) |
O1—C5 | 1.3944 (13) | C6—H6A | 0.93 |
O2—C11 | 1.3569 (12) | C7—C8 | 1.3881 (16) |
O2—C9 | 1.3929 (13) | C7—H7A | 0.93 |
O3—C1 | 1.3370 (14) | C8—C9 | 1.3824 (14) |
O3—C15 | 1.4393 (18) | C8—H8A | 0.93 |
O4—C3 | 1.3301 (14) | C9—C10 | 1.3952 (14) |
O4—C16 | 1.4436 (15) | C10—C17 | 1.4934 (15) |
O5—C17 | 1.3370 (16) | C12—C13 | 1.3943 (17) |
O5—C18 | 1.4432 (17) | C13—C14 | 1.3918 (15) |
O6—C17 | 1.2023 (16) | C15—H15A | 0.96 |
O7—C12 | 1.3301 (13) | C15—H15B | 0.96 |
O7—C19 | 1.4457 (16) | C15—H15C | 0.96 |
O8—C14 | 1.3288 (14) | C16—H16A | 0.96 |
O8—C20 | 1.4415 (15) | C16—H16B | 0.96 |
N1—C4 | 1.3224 (14) | C16—H16C | 0.96 |
N1—C1 | 1.3365 (14) | C18—H18A | 0.96 |
N2—C4 | 1.3215 (16) | C18—H18B | 0.96 |
N2—C3 | 1.3372 (14) | C18—H18C | 0.96 |
N3—C11 | 1.3238 (14) | C19—H19A | 0.96 |
N3—C12 | 1.3353 (13) | C19—H19B | 0.96 |
N4—C11 | 1.3214 (16) | C19—H19C | 0.96 |
N4—C14 | 1.3360 (13) | C20—H20A | 0.96 |
C1—C2 | 1.3930 (18) | C20—H20B | 0.96 |
C2—C3 | 1.3923 (15) | C20—H20C | 0.96 |
C4—O1—C5 | 117.72 (9) | N3—C11—O2 | 112.86 (10) |
C11—O2—C9 | 117.70 (9) | O7—C12—N3 | 119.87 (11) |
C1—O3—C15 | 116.92 (10) | O7—C12—C13 | 117.78 (9) |
C3—O4—C16 | 116.97 (9) | N3—C12—C13 | 122.35 (10) |
C17—O5—C18 | 115.74 (13) | C14—C13—C12 | 116.54 (9) |
C12—O7—C19 | 117.10 (9) | C14—C13—Cl2 | 121.81 (9) |
C14—O8—C20 | 117.10 (9) | C12—C13—Cl2 | 121.61 (8) |
C4—N1—C1 | 114.76 (11) | O8—C14—N4 | 119.85 (10) |
C4—N2—C3 | 115.27 (9) | O8—C14—C13 | 118.24 (10) |
C11—N3—C12 | 114.78 (10) | N4—C14—C13 | 121.92 (11) |
C11—N4—C14 | 115.29 (9) | O3—C15—H15A | 109.5 |
N1—C1—O3 | 120.02 (11) | O3—C15—H15B | 109.5 |
N1—C1—C2 | 122.37 (10) | H15A—C15—H15B | 109.5 |
O3—C1—C2 | 117.60 (10) | O3—C15—H15C | 109.5 |
C3—C2—C1 | 116.54 (10) | H15A—C15—H15C | 109.5 |
C3—C2—Cl1 | 121.59 (10) | H15B—C15—H15C | 109.5 |
C1—C2—Cl1 | 121.87 (9) | O4—C16—H16A | 109.5 |
O4—C3—N2 | 119.63 (10) | O4—C16—H16B | 109.5 |
O4—C3—C2 | 118.50 (10) | H16A—C16—H16B | 109.5 |
N2—C3—C2 | 121.87 (11) | O4—C16—H16C | 109.5 |
N2—C4—N1 | 129.15 (10) | H16A—C16—H16C | 109.5 |
N2—C4—O1 | 117.63 (9) | H16B—C16—H16C | 109.5 |
N1—C4—O1 | 113.22 (10) | O6—C17—O5 | 124.13 (11) |
C6—C5—O1 | 116.19 (9) | O6—C17—C10 | 124.84 (12) |
C6—C5—C10 | 121.70 (9) | O5—C17—C10 | 111.03 (10) |
O1—C5—C10 | 122.04 (9) | O5—C18—H18A | 109.5 |
C5—C6—C7 | 119.62 (10) | O5—C18—H18B | 109.5 |
C5—C6—H6A | 120.2 | H18A—C18—H18B | 109.5 |
C7—C6—H6A | 120.2 | O5—C18—H18C | 109.5 |
C8—C7—C6 | 120.21 (10) | H18A—C18—H18C | 109.5 |
C8—C7—H7A | 119.9 | H18B—C18—H18C | 109.5 |
C6—C7—H7A | 119.9 | O7—C19—H19A | 109.5 |
C9—C8—C7 | 119.10 (10) | O7—C19—H19B | 109.5 |
C9—C8—H8A | 120.4 | H19A—C19—H19B | 109.5 |
C7—C8—H8A | 120.4 | O7—C19—H19C | 109.5 |
C8—C9—O2 | 116.45 (9) | H19A—C19—H19C | 109.5 |
C8—C9—C10 | 122.36 (10) | H19B—C19—H19C | 109.5 |
O2—C9—C10 | 121.14 (9) | O8—C20—H20A | 109.5 |
C9—C10—C5 | 117.01 (9) | O8—C20—H20B | 109.5 |
C9—C10—C17 | 120.20 (9) | H20A—C20—H20B | 109.5 |
C5—C10—C17 | 122.79 (9) | O8—C20—H20C | 109.5 |
N4—C11—N3 | 129.10 (10) | H20A—C20—H20C | 109.5 |
N4—C11—O2 | 118.04 (9) | H20B—C20—H20C | 109.5 |
C4—N1—C1—O3 | 178.40 (10) | C8—C9—C10—C17 | 179.84 (11) |
C4—N1—C1—C2 | −1.96 (15) | O2—C9—C10—C17 | −2.78 (16) |
C15—O3—C1—N1 | 1.42 (16) | C6—C5—C10—C9 | 0.94 (16) |
C15—O3—C1—C2 | −178.24 (11) | O1—C5—C10—C9 | 177.93 (10) |
N1—C1—C2—C3 | 0.85 (16) | C6—C5—C10—C17 | −179.62 (11) |
O3—C1—C2—C3 | −179.50 (10) | O1—C5—C10—C17 | −2.62 (17) |
N1—C1—C2—Cl1 | −179.21 (8) | C14—N4—C11—N3 | −1.47 (16) |
O3—C1—C2—Cl1 | 0.44 (15) | C14—N4—C11—O2 | 177.68 (9) |
C16—O4—C3—N2 | −2.55 (15) | C12—N3—C11—N4 | 0.79 (16) |
C16—O4—C3—C2 | 177.03 (10) | C12—N3—C11—O2 | −178.39 (9) |
C4—N2—C3—O4 | 178.15 (10) | C9—O2—C11—N4 | −1.34 (13) |
C4—N2—C3—C2 | −1.42 (14) | C9—O2—C11—N3 | 177.94 (9) |
C1—C2—C3—O4 | −178.62 (10) | C19—O7—C12—N3 | 0.01 (14) |
Cl1—C2—C3—O4 | 1.43 (14) | C19—O7—C12—C13 | −179.72 (10) |
C1—C2—C3—N2 | 0.95 (15) | C11—N3—C12—O7 | −179.16 (9) |
Cl1—C2—C3—N2 | −178.99 (8) | C11—N3—C12—C13 | 0.55 (14) |
C3—N2—C4—N1 | 0.15 (16) | O7—C12—C13—C14 | 178.67 (9) |
C3—N2—C4—O1 | 179.26 (9) | N3—C12—C13—C14 | −1.04 (15) |
C1—N1—C4—N2 | 1.52 (16) | O7—C12—C13—Cl2 | 0.85 (14) |
C1—N1—C4—O1 | −177.62 (9) | N3—C12—C13—Cl2 | −178.87 (8) |
C5—O1—C4—N2 | 12.29 (13) | C20—O8—C14—N4 | −9.19 (15) |
C5—O1—C4—N1 | −168.46 (9) | C20—O8—C14—C13 | 170.99 (11) |
C4—O1—C5—C6 | −121.76 (11) | C11—N4—C14—O8 | −179.01 (10) |
C4—O1—C5—C10 | 61.09 (13) | C11—N4—C14—C13 | 0.81 (14) |
O1—C5—C6—C7 | −177.67 (11) | C12—C13—C14—O8 | −179.86 (10) |
C10—C5—C6—C7 | −0.51 (18) | Cl2—C13—C14—O8 | −2.04 (14) |
C5—C6—C7—C8 | −0.20 (19) | C12—C13—C14—N4 | 0.31 (15) |
C6—C7—C8—C9 | 0.43 (19) | Cl2—C13—C14—N4 | 178.14 (8) |
C7—C8—C9—O2 | −177.46 (11) | C18—O5—C17—O6 | 2.3 (2) |
C7—C8—C9—C10 | 0.03 (18) | C18—O5—C17—C10 | −177.92 (13) |
C11—O2—C9—C8 | −110.10 (11) | C9—C10—C17—O6 | 41.16 (17) |
C11—O2—C9—C10 | 72.38 (13) | C5—C10—C17—O6 | −138.26 (13) |
C8—C9—C10—C5 | −0.70 (16) | C9—C10—C17—O5 | −138.63 (11) |
O2—C9—C10—C5 | 176.68 (10) | C5—C10—C17—O5 | 41.94 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
C16—H16A···N1i | 0.96 | 2.58 | 3.5018 (19) | 161 |
C20—H20A···N3ii | 0.96 | 2.59 | 3.5148 (19) | 161 |
Symmetry codes: (i) x, y−1, z; (ii) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C20H18Cl2N4O8 |
Mr | 513.28 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 100 |
a, b, c (Å) | 29.354 (3), 8.0485 (8), 22.5923 (19) |
β (°) | 123.014 (2) |
V (Å3) | 4475.7 (7) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.35 |
Crystal size (mm) | 0.58 × 0.31 × 0.16 |
Data collection | |
Diffractometer | Bruker APEXII DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.825, 0.948 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22170, 8040, 6824 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.759 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.040, 0.129, 1.08 |
No. of reflections | 8040 |
No. of parameters | 312 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.71, −0.55 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C16—H16A···N1i | 0.96 | 2.58 | 3.5018 (19) | 161 |
C20—H20A···N3ii | 0.96 | 2.59 | 3.5148 (19) | 161 |
Symmetry codes: (i) x, y−1, z; (ii) x, y+1, z. |
Acknowledgements
HKF and JHG thank Universiti Sains Malaysia (USM) for the Research University Golden Goose grant (No. 1001/PFIZIK/811012). JHG also thanks USM for the award of a USM fellowship. AMI is thankful to the Head of the Chemistry Department and the Director, National Institute of Technology-Karnataka for their encouragement. AMI also thanks USM for a partially sponsored research visit to the X-ray Crystallography Unit, School of Physics, USM.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Methyl-2,6-bis[(5-bromo-4,6-dimethoxypyrimidin-2-yl)oxy]benzoate is a derivative of herbicide showing excellent herbicidal effects on annual and perennial weeds and high-safety crops, especially rice and wheat and is applied to paddy fields, ploughed fields and non-agricultural land (Koichiro et al., 1988, 1998). Most sulphonylurea herbicides and all pyrimidinylbenzoate herbicides (He et al., 2007) such as nicofulfuron, amidosulfuron, halopyrazosulfuron, ethoxysulfuron, pyriminobac-methyl and pyriftalid, possess 4,6-dimethoxypyrimidin-2-yl groups (Li et al., 2006), while sulfometuron-methyl, a kind of sulfonylurea, contains 4,6-dimethylpyrimidin-2-yl groups, which suggests that the two disubstituted pyrimidin-2-yl groups possess high biological activity (Gerorge, 1983).
In the title compound (Fig. 1), the two pyrimidine rings (C1-C4/N1/N2 and C11-C14/N3/N4) are essentially planar, with maximum deviations of 0.011 (1) and 0.007 (1) Å, respectively, at atoms N1 and N4. The central phenyl ring is inclined at dihedral angles of 66.68 (5) and 71.91 (6)°, respectively, with respect to the C1-C4/N1/N2 and C11-C14/N3/N4 pyrimidine rings. The bond lengths and angles are consistent with a closely related structure (Li & Luo, 2006).
In the crystal structure, intermolecular C16—H16A···N1 and C20—H20A···N3 hydrogen bonds (Table 1) link neighbouring molecules into a ribbon-like structure containing R22(26) ring motifs (Fig. 2, Bernstein et al., 1995), along the b axis. The interesting features of the crystal structure are the intermolecular short Cl···Cl [Cl1···Cl2iii = 3.4427 (6) Å; (iii) 1/2-x2, y-1/2, 1/2-z] and Cl···O [Cl1···O8iii = 3.1750 (11) and Cl2···O1iv = 3.1420 (9) Å; (iv) x, 2-y, z+1/2] interactions, which are shorter than the sum of the van der Waals radii of the relevant atoms, interconnecting the ribbons into two-dimensional networks parallel to the bc plane. The crystal structure is further stabilized by weak intermolecular π–π interactions [Cg1···Cg1v = 3.4552 (8) Å; (v) -x, y, -z+1/2; Cg1 is the centroid of C11-C14/N3/N4 pyrimidine ring].