organic compounds
Hydrogen bis[2-(4-ammoniophenoxy)acetate] triiodide
aOrdered Matter Science Research Center, College of Chemistry and Chemical Engineering, Southeast University, Nanjing 211189, People's Republic of China
*Correspondence e-mail: wxwang_1109@yahoo.cn
In the title compound, C16H19N2O6+·I3−, the carboxylate groups of a pair of (4-aminophenoxy) acetate ligands are bridged by an H atom in a rather classical configuration. The H atom is located on an inversion center and the pair of carboxylate groups are centrosymmetrically related with an O⋯O distance of 2.494 (5) Å. The I3− anion is also located on an inversion center. In the crystal, N—H⋯O and N—H⋯I hydrogen-bond interactions build up a three-dimensionnal network.
Related literature
For dielectric–ferroelectric materials, see: Hang et al. (2009); Li et al. (2008). For related structures, see: Antolic et al. (1999); Bacon et al. (1977); Chen & Mak (1994); Godzisz et al. (2003); Kay (1977); Li et al. (1998); McAdam et al. (1971); Pogorzelec & Garbarczyk (2002); Sridhar et al. (2001); Videnova-Adrabinska et al. (2007); Zhu et al. (2002).
Experimental
Crystal data
|
Refinement
|
Data collection: CrystalClear (Rigaku, 2005); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536810024852/dn2575sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810024852/dn2575Isup2.hkl
ethyl 2-(4-aminophenoxy)acetate (1.95 g) and methanol(30 ml) were added to a round-bottomed flask with a magnetic stirrer bar, then hydrofluoric acid(52%) 2.4 g was added into the mixture. Yellow plate-like crystals of (I) were grown from an ethanol solution of the title compound by slow evaporation at room temperature.
All H atoms attached to C atoms and N atom were fixed geometrically and treated as riding with C—H = 0.93 Å (aromatic) or 0.97 Å (methylene) and N—H = 0.89 Å with Uiso(H) = 1.2Ueq(C,N,O).
Data collection: CrystalClear (Rigaku, 2005); cell
CrystalClear (Rigaku, 2005); data reduction: CrystalClear (Rigaku, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C16H19N2O6+·I3− | F(000) = 672 |
Mr = 716.03 | Dx = 2.275 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 10680 reflections |
a = 5.065 (1) Å | θ = 3.1–27.5° |
b = 13.780 (3) Å | µ = 4.52 mm−1 |
c = 14.982 (3) Å | T = 293 K |
β = 91.45 (3)° | Prism, yellow |
V = 1045.4 (4) Å3 | 0.40 × 0.30 × 0.20 mm |
Z = 2 |
Rigaku SCXmini diffractometer | 2408 independent reflections |
Radiation source: fine-focus sealed tube | 2182 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.034 |
Detector resolution: 13.6612 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
ω scans | h = −6→6 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | k = −17→17 |
Tmin = 0.52, Tmax = 0.58 | l = −19→19 |
10680 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.028 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.062 | H-atom parameters constrained |
S = 1.14 | w = 1/[σ2(Fo2) + (0.0183P)2 + 1.2671P] where P = (Fo2 + 2Fc2)/3 |
2408 reflections | (Δ/σ)max = 0.002 |
124 parameters | Δρmax = 0.85 e Å−3 |
0 restraints | Δρmin = −0.75 e Å−3 |
C16H19N2O6+·I3− | V = 1045.4 (4) Å3 |
Mr = 716.03 | Z = 2 |
Monoclinic, P21/n | Mo Kα radiation |
a = 5.065 (1) Å | µ = 4.52 mm−1 |
b = 13.780 (3) Å | T = 293 K |
c = 14.982 (3) Å | 0.40 × 0.30 × 0.20 mm |
β = 91.45 (3)° |
Rigaku SCXmini diffractometer | 2408 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | 2182 reflections with I > 2σ(I) |
Tmin = 0.52, Tmax = 0.58 | Rint = 0.034 |
10680 measured reflections |
R[F2 > 2σ(F2)] = 0.028 | 0 restraints |
wR(F2) = 0.062 | H-atom parameters constrained |
S = 1.14 | Δρmax = 0.85 e Å−3 |
2408 reflections | Δρmin = −0.75 e Å−3 |
124 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 1.2218 (4) | 0.67887 (15) | 0.58467 (15) | 0.0326 (5) | |
O2 | 0.8079 (4) | 0.56039 (18) | 0.62140 (14) | 0.0365 (5) | |
O3 | 0.6743 (4) | 0.55858 (17) | 0.47780 (15) | 0.0367 (5) | |
H3 | 0.5000 | 0.5000 | 0.5000 | 0.044* | |
N1 | 1.1886 (6) | 1.0177 (2) | 0.7898 (2) | 0.0412 (7) | |
H1A | 1.2238 | 1.0675 | 0.7542 | 0.049* | |
H1B | 1.3108 | 1.0144 | 0.8334 | 0.049* | |
H1C | 1.0304 | 1.0259 | 0.8132 | 0.049* | |
C3 | 0.8242 (6) | 0.5871 (2) | 0.5433 (2) | 0.0266 (6) | |
C4 | 1.1951 (6) | 0.7628 (2) | 0.63381 (19) | 0.0253 (6) | |
C9 | 1.1900 (6) | 0.9274 (2) | 0.73775 (19) | 0.0295 (6) | |
C11 | 1.3912 (6) | 0.7776 (2) | 0.6988 (2) | 0.0335 (7) | |
H11A | 1.5251 | 0.7321 | 0.7070 | 0.040* | |
C13 | 1.3875 (6) | 0.8600 (2) | 0.7513 (2) | 0.0332 (7) | |
H13A | 1.5172 | 0.8698 | 0.7955 | 0.040* | |
C14 | 0.9956 (6) | 0.9123 (3) | 0.6741 (2) | 0.0369 (7) | |
H14A | 0.8617 | 0.9579 | 0.6662 | 0.044* | |
C15 | 0.9965 (6) | 0.8299 (3) | 0.6217 (2) | 0.0361 (7) | |
H15A | 0.8640 | 0.8199 | 0.5785 | 0.043* | |
C16 | 1.0386 (6) | 0.6569 (2) | 0.5143 (2) | 0.0311 (7) | |
H16A | 1.1324 | 0.6284 | 0.4651 | 0.037* | |
H16B | 0.9570 | 0.7166 | 0.4931 | 0.037* | |
I1 | 0.53672 (6) | 0.162582 (19) | 0.624725 (17) | 0.05293 (10) | |
I2 | 0.5000 | 0.0000 | 0.5000 | 0.03753 (10) |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0381 (12) | 0.0215 (10) | 0.0377 (12) | −0.0003 (9) | −0.0087 (9) | −0.0031 (9) |
O2 | 0.0356 (12) | 0.0465 (14) | 0.0272 (11) | −0.0053 (10) | −0.0027 (9) | 0.0036 (10) |
O3 | 0.0373 (12) | 0.0434 (13) | 0.0290 (11) | −0.0057 (10) | −0.0059 (9) | −0.0062 (10) |
N1 | 0.0396 (16) | 0.0464 (17) | 0.0376 (16) | −0.0077 (13) | 0.0043 (12) | −0.0193 (13) |
C3 | 0.0285 (15) | 0.0233 (14) | 0.0280 (15) | 0.0060 (11) | −0.0017 (11) | −0.0031 (12) |
C4 | 0.0283 (14) | 0.0212 (14) | 0.0264 (14) | −0.0055 (11) | 0.0002 (11) | 0.0026 (11) |
C9 | 0.0344 (16) | 0.0309 (16) | 0.0234 (14) | −0.0087 (13) | 0.0041 (12) | −0.0055 (12) |
C11 | 0.0330 (16) | 0.0298 (16) | 0.0372 (17) | −0.0007 (13) | −0.0100 (13) | 0.0042 (14) |
C13 | 0.0341 (16) | 0.0382 (17) | 0.0269 (15) | −0.0050 (14) | −0.0084 (12) | 0.0009 (13) |
C14 | 0.0332 (17) | 0.0375 (18) | 0.0398 (18) | 0.0090 (14) | −0.0057 (13) | −0.0088 (15) |
C15 | 0.0295 (16) | 0.0404 (19) | 0.0379 (18) | 0.0040 (13) | −0.0117 (13) | −0.0102 (15) |
C16 | 0.0413 (18) | 0.0228 (15) | 0.0290 (15) | −0.0011 (12) | −0.0050 (13) | −0.0014 (12) |
I1 | 0.0714 (2) | 0.04395 (16) | 0.04379 (15) | −0.00423 (12) | 0.00786 (12) | −0.00539 (11) |
I2 | 0.04291 (18) | 0.04059 (18) | 0.02891 (16) | 0.00398 (13) | −0.00235 (12) | 0.00590 (12) |
O1—C4 | 1.380 (4) | C4—C11 | 1.388 (4) |
O1—C16 | 1.419 (4) | C9—C14 | 1.369 (4) |
O2—C3 | 1.232 (4) | C9—C13 | 1.376 (5) |
O3—C3 | 1.287 (4) | C11—C13 | 1.382 (5) |
O3—O3i | 2.495 (5) | C11—H11A | 0.9300 |
O3—H3 | 1.2476 | C13—H13A | 0.9300 |
N1—C9 | 1.467 (4) | C14—C15 | 1.381 (5) |
N1—H1A | 0.8899 | C14—H14A | 0.9300 |
N1—H1B | 0.8896 | C15—H15A | 0.9300 |
N1—H1C | 0.8899 | C16—H16A | 0.9700 |
C3—C16 | 1.522 (4) | C16—H16B | 0.9700 |
C4—C15 | 1.375 (4) | I1—I2 | 2.9203 (5) |
C4—O1—C16 | 120.3 (2) | C13—C11—C4 | 120.0 (3) |
C3—O3—O3i | 113.7 (2) | C13—C11—H11A | 120.0 |
C3—O3—H3 | 113.7 | C4—C11—H11A | 120.0 |
C9—N1—H1A | 109.4 | C9—C13—C11 | 119.4 (3) |
C9—N1—H1B | 109.5 | C9—C13—H13A | 120.3 |
H1A—N1—H1B | 109.5 | C11—C13—H13A | 120.3 |
C9—N1—H1C | 109.5 | C9—C14—C15 | 120.6 (3) |
H1A—N1—H1C | 109.5 | C9—C14—H14A | 119.7 |
H1B—N1—H1C | 109.5 | C15—C14—H14A | 119.7 |
O2—C3—O3 | 125.5 (3) | C4—C15—C14 | 119.3 (3) |
O2—C3—C16 | 121.7 (3) | C4—C15—H15A | 120.3 |
O3—C3—C16 | 112.8 (3) | C14—C15—H15A | 120.3 |
C15—C4—O1 | 125.1 (3) | O1—C16—C3 | 112.4 (2) |
C15—C4—C11 | 120.2 (3) | O1—C16—H16A | 109.1 |
O1—C4—C11 | 114.8 (3) | C3—C16—H16A | 109.1 |
C14—C9—C13 | 120.5 (3) | O1—C16—H16B | 109.1 |
C14—C9—N1 | 119.1 (3) | C3—C16—H16B | 109.1 |
C13—C9—N1 | 120.4 (3) | H16A—C16—H16B | 107.9 |
Symmetry code: (i) −x+1, −y+1, −z+1. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O3i | 1.25 | 1.25 | 2.495 (5) | 180 |
N1—H1A···I1ii | 0.89 | 2.85 | 3.665 (3) | 152 |
N1—H1B···O2iii | 0.89 | 2.13 | 2.907 (4) | 146 |
N1—H1C···O2iv | 0.89 | 2.05 | 2.935 (4) | 172 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x+1, y+1, z; (iii) −x+5/2, y+1/2, −z+3/2; (iv) −x+3/2, y+1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C16H19N2O6+·I3− |
Mr | 716.03 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 5.065 (1), 13.780 (3), 14.982 (3) |
β (°) | 91.45 (3) |
V (Å3) | 1045.4 (4) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 4.52 |
Crystal size (mm) | 0.40 × 0.30 × 0.20 |
Data collection | |
Diffractometer | Rigaku SCXmini diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2005) |
Tmin, Tmax | 0.52, 0.58 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 10680, 2408, 2182 |
Rint | 0.034 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.028, 0.062, 1.14 |
No. of reflections | 2408 |
No. of parameters | 124 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.85, −0.75 |
Computer programs: CrystalClear (Rigaku, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3···O3i | 1.25 | 1.25 | 2.495 (5) | 180.0 |
N1—H1A···I1ii | 0.89 | 2.85 | 3.665 (3) | 152.2 |
N1—H1B···O2iii | 0.89 | 2.13 | 2.907 (4) | 145.9 |
N1—H1C···O2iv | 0.89 | 2.05 | 2.935 (4) | 171.5 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x+1, y+1, z; (iii) −x+5/2, y+1/2, −z+3/2; (iv) −x+3/2, y+1/2, −z+3/2. |
Acknowledgements
The authors are grateful to the starter fund of Southeast University for financial support to purchase the X-ray diffractometer.
References
Antolic, S., Salopek, B., Kojic-Prodic, B., Magnus, V. & Cohen, J. D. (1999). Plant. Growth Regul. 27, 21–31. CAS Google Scholar
Bacon, G. E., Walker, C. R. & Speakman, J. C. (1977). J. Chem. Soc. Perkin Trans. 2, pp. 979–983. CSD CrossRef Google Scholar
Burnett, M. N. & Johnson, C. K. (1996). ORTEPIII. Report ORNL-6895. Oak Ridge National Laboratory, Tennessee, USA. Google Scholar
Chen, X.-M. & Mak, T. C. W. (1994). Acta Cryst. C50, 1807–1809. CSD CrossRef CAS Web of Science IUCr Journals Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Godzisz, D., Llczyszyn, M. & Ciunik, Z. (2003). Spectrochim. Acta Part A, 59, 235–244. CrossRef CAS Google Scholar
Hang, T., Fu, D. W., Ye, Q. & Xiong, R. G. (2009). Cryst. Growth Des. 5, 2026–2029. Web of Science CSD CrossRef Google Scholar
Kay, M. I. (1977). Ferroelectrics, 17, 415–418. CrossRef CAS Google Scholar
Li, X. Z., Qu, Z. R. & Xiong, R. G. (2008). Chin. J. Chem. 11, 1959–1962. Web of Science CSD CrossRef Google Scholar
Li, P., Wang, T., Emge, T. & Zhao, K. (1998). J. Am. Chem. Soc. 120, 7391–7392. Web of Science CSD CrossRef CAS Google Scholar
McAdam, A., Currie, M. & Speakman, J. C. (1971). J. Chem. Soc. A, pp. 1994–1997. CrossRef Google Scholar
Pogorzelec, K. & Garbarczyk, J. (2002). Mol. Phys. Rep. 35, 132–141. CAS Google Scholar
Rigaku (2005). CrystalClear. Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sridhar, B., Srinivasan, N. & Rajaram, R. K. (2001). Acta Cryst. E57, o1004–o1006. Web of Science CSD CrossRef IUCr Journals Google Scholar
Videnova-Adrabinska, V., Obara, E. & Lis, T. (2007). New J. Chem. 31, 287–295. Web of Science CSD CrossRef CAS Google Scholar
Zhu, H.-F., Fan, J., Okamura, T., Sun, W.-Y. & Ueyama, N. (2002). Chem. Lett. pp. 898–899. Web of Science CSD CrossRef Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
We are interested in the dielectric-ferroelectric materials, including organic ligands (Li et al.,2008), metal-organic coordination compounds (Hang et al., 2009) and organic-inorganic hybrids. Recent studies have revealed that in amino acid-inorganic acid complexes, when the number of H atoms liberated from the inorganic acid is less than the number of amino acids, the H atom is shared by two amino acids, resulting in short symmetric O—H···O hydrogen bonds, as evidenced in triglycine sulfate (Kay et al., 1977), leading to phase transitions. Thus, we want to find aromatic compounds containing amidogens having dielectric-ferroelectric properties. As part of our ongoing studies, we report here the crystal structure of the title compound.
In the title compound, C16H19N2O6+.I3-, the carboxylate groups of a pair of (4-aminophenoxy) acetate are bridged by a proton (Fig. 1) as already observed in many carboxylate derivative (Antolic et al., 1999; Bacon et al.,1977; Chen & Mak, 1994; Godzisz et al., 2003; Kay, 1977; Li et al., 1998; McAdam et al.,1971; Pogorzelec & Garbarczyk, 2002; Sridhar et al., 2001; Videnova-Adrabinska et al., 2007; Zhu et al., 2002). The proton is located on an inversion center and the pair of carboxylate groups are centrosymmetrically related with an O···O distance of ca 2.494 (5) Å. The two carboxylate frameworks are in the same plane with the largest deviation from the plane being 0.013 (3) Å. This plane is making a dihedral angle of 84.1 (1)° with the phenyl ring.
The anion I3- is also located around inversion center. The occurence of N-H···O and N-H···I hydrogen interactions build up a three dimensionnal network (Fig. 2).