organic compounds
1-Benzyl-3-[(trimethylsilyl)methyl]benzimidazolium chloride monohydrate
aDepartment of Physics, Faculty of Arts and Sciences, Erciyes University, 38039 Kayseri, Turkey, bDepartment of Physics, Faculty of Arts and Sciences, Cumhuriyet University, 58140 Sivas, Turkey, cDepartment of Chemistry, Faculty of Arts and Sciences, Ínönü University, 44280 Malatya, Turkey, dDepartment of Chemistry, Faculty of Arts and Sciences, Adıyaman University, 02040 Adıyaman, Turkey, and eDepartment of Physics, Faculty of Arts and Sciences, Ondokuz Mayıs University, 55139 Samsun, Turkey
*Correspondence e-mail: akkurt@erciyes.edu.tr
The title compound, C18H23N2Si+·Cl−·H2O, was synthesized from 1-[(trimethylsilyl)methyl]benzimidazole and benzyl chloride in dimethylformamide. The benzimidazole ring system is approximately planar, with a maximum deviation of 0.022 (2) Å, and makes an angle of 74.80 (12)° with the phenyl ring. The crystal packing is stabilized by O—H⋯Cl, C—H⋯Cl, C—H⋯O and C—H⋯π interactions between symmetry-related molecules together with π–π stacking interactions between the imidazolium and benzene rings [centroid–centroid distance = 3.5690 (15) Å] and between the benzene rings [centroid–centroid distance = 3.7223 (14) Å].
Related literature
For general background to benzimidazole compounds and for the biological activity of related structures, see: Galal et al. (2009); Huang et al. (2006); Küçükbay & Durmaz (1997); Küçükbay et al. (1995, 2003, 2004, 2010); Lukevics et al. (2001); Singh & Lown (2000); Tavman et al. (2005); Turner & Denny (1996); Williams et al. (2002); Yılmaz & Küçükbay (2009); Çetinkaya et al. (1996). For similar structures, see: Akkurt et al. (2008, 2010).
Experimental
Crystal data
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Refinement
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Data collection: X-AREA (Stoe & Cie, 2002); cell X-AREA; data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999).
Supporting information
10.1107/S1600536810024128/dn2582sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810024128/dn2582Isup2.hkl
A mixture of 1-trimethylsilylmethylbenzimidazole (1.02 g, 5 mmol) and benzyl chloride (0.60 cm3, 5 mmol) in dimethylformamide (5 ml) was refluxed for 3 h. The mixture was then cooled and the volatiles were removed in vacuo. The residue was crystallized from a dimethylformamide/ethanol (1:1). White crystals of the title compound (1.36 g, 82%) were obtained, m.p. 425–426 K; ν(CN) = 1553 cm-1. Anal. Found: C 61.64, H 7.19, N 7.93%. Calculated for C18H25ClN2OSi: C 61.96, H 7.22, N 8.03%. 1H NMR (δ, DMSO-d6): 10.21 (s, 1H, NCHN), 8.11 - 7.59 (m, 4H, C6H4), 7.56–7.33 (m, 5H, C6H5), 5.86 (s, 2H, CH2 benzyl), 4.30 (s, 2H, CH2Si) and 0.14 [s, 9H, (CH3)3Si]. 13C NMR (δ, DMSO-d6): 141.6 (NCHN), 134.6, 132.1, 130.8, 129.1, 128.8 and 128.3 (C6H4), 126.8, 126.5, 114.3 and 113.9 (C6H5), 49.8 (CH2 benzyl), 38.1(CH2Si) and -2.5 [(CH3)3Si].
All H atoms attached to C atoms were fixed geometrically and treated as riding with C—H = 0.93 Å (aromatic), 0.96 Å (methyl) and 0.97 Å (methylene) with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(methyl). H atoms of water molecule were located in difference Fourier maps and included in the subsequent
using restraints (O-H= 0.83 (1)Å and H···H= 1.40 (2)Å) with Uiso(H) = 1.5Ueq(O).In the last cycles of they were treated as riding on the O atoms.Data collection: X-AREA (Stoe & Cie, 2002); cell
X-AREA (Stoe & Cie, 2002); data reduction: X-RED32 (Stoe & Cie, 2002); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999).C18H23N2Si+·Cl−·H2O | Z = 2 |
Mr = 348.94 | F(000) = 372 |
Triclinic, P1 | Dx = 1.203 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.3592 (7) Å | Cell parameters from 28124 reflections |
b = 10.9500 (9) Å | θ = 2.1–28.0° |
c = 11.0522 (8) Å | µ = 0.27 mm−1 |
α = 117.594 (6)° | T = 296 K |
β = 103.295 (6)° | Prism, colourless |
γ = 92.094 (6)° | 0.57 × 0.50 × 0.36 mm |
V = 963.39 (15) Å3 |
Stoe IPDS 2 diffractometer | 3987 independent reflections |
Radiation source: sealed X-ray tube, 12 x 0.4 mm long-fine focus | 3241 reflections with I > 2σ(I) |
Plane graphite monochromator | Rint = 0.029 |
Detector resolution: 6.67 pixels mm-1 | θmax = 26.5°, θmin = 2.1° |
ω scans | h = −11→11 |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | k = −13→12 |
Tmin = 0.859, Tmax = 0.909 | l = −13→13 |
12149 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.135 | H-atom parameters constrained |
S = 1.07 | w = 1/[σ2(Fo2) + (0.0637P)2 + 0.2683P] where P = (Fo2 + 2Fc2)/3 |
3987 reflections | (Δ/σ)max < 0.001 |
211 parameters | Δρmax = 0.32 e Å−3 |
0 restraints | Δρmin = −0.32 e Å−3 |
C18H23N2Si+·Cl−·H2O | γ = 92.094 (6)° |
Mr = 348.94 | V = 963.39 (15) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.3592 (7) Å | Mo Kα radiation |
b = 10.9500 (9) Å | µ = 0.27 mm−1 |
c = 11.0522 (8) Å | T = 296 K |
α = 117.594 (6)° | 0.57 × 0.50 × 0.36 mm |
β = 103.295 (6)° |
Stoe IPDS 2 diffractometer | 3987 independent reflections |
Absorption correction: integration (X-RED32; Stoe & Cie, 2002) | 3241 reflections with I > 2σ(I) |
Tmin = 0.859, Tmax = 0.909 | Rint = 0.029 |
12149 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.135 | H-atom parameters constrained |
S = 1.07 | Δρmax = 0.32 e Å−3 |
3987 reflections | Δρmin = −0.32 e Å−3 |
211 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Si1 | 0.53328 (7) | 0.20172 (7) | 0.79168 (6) | 0.05705 (19) | |
N1 | 0.72385 (17) | 0.36741 (17) | 0.52896 (17) | 0.0466 (4) | |
N2 | 0.59349 (17) | 0.36730 (17) | 0.66907 (17) | 0.0466 (4) | |
C1 | 0.4923 (2) | 0.33506 (19) | 0.54087 (19) | 0.0428 (4) | |
C2 | 0.3377 (2) | 0.3101 (2) | 0.4971 (2) | 0.0521 (5) | |
H2 | 0.2816 | 0.3104 | 0.5566 | 0.063* | |
C3 | 0.2721 (2) | 0.2847 (2) | 0.3611 (2) | 0.0587 (5) | |
H3 | 0.1688 | 0.2667 | 0.3276 | 0.070* | |
C4 | 0.3560 (2) | 0.2853 (3) | 0.2717 (2) | 0.0592 (5) | |
H4 | 0.3071 | 0.2682 | 0.1806 | 0.071* | |
C5 | 0.5084 (2) | 0.3104 (2) | 0.3150 (2) | 0.0532 (5) | |
H5 | 0.5641 | 0.3111 | 0.2555 | 0.064* | |
C6 | 0.57570 (19) | 0.33479 (19) | 0.4512 (2) | 0.0432 (4) | |
C7 | 0.7293 (2) | 0.3855 (2) | 0.6574 (2) | 0.0505 (5) | |
H7 | 0.8165 | 0.4079 | 0.7293 | 0.061* | |
C8 | 0.8534 (2) | 0.3833 (2) | 0.4794 (2) | 0.0547 (5) | |
H8A | 0.9413 | 0.4273 | 0.5602 | 0.066* | |
H8B | 0.8371 | 0.4442 | 0.4377 | 0.066* | |
C9 | 0.8803 (2) | 0.2461 (2) | 0.3720 (2) | 0.0510 (5) | |
C10 | 0.8520 (3) | 0.2111 (3) | 0.2308 (3) | 0.0717 (7) | |
H10 | 0.8171 | 0.2741 | 0.2014 | 0.086* | |
C11 | 0.8748 (3) | 0.0831 (4) | 0.1329 (3) | 0.0935 (10) | |
H11 | 0.8546 | 0.0600 | 0.0377 | 0.112* | |
C12 | 0.9272 (3) | −0.0100 (3) | 0.1753 (4) | 0.0947 (10) | |
H12 | 0.9404 | −0.0970 | 0.1089 | 0.114* | |
C13 | 0.9600 (3) | 0.0255 (3) | 0.3158 (4) | 0.0909 (10) | |
H13 | 0.9980 | −0.0367 | 0.3451 | 0.109* | |
C14 | 0.9372 (3) | 0.1527 (3) | 0.4141 (3) | 0.0700 (7) | |
H14 | 0.9602 | 0.1760 | 0.5095 | 0.084* | |
C15 | 0.5549 (3) | 0.3754 (2) | 0.7947 (2) | 0.0549 (5) | |
H15A | 0.4625 | 0.4122 | 0.8003 | 0.066* | |
H15B | 0.6320 | 0.4406 | 0.8796 | 0.066* | |
C16 | 0.3837 (3) | 0.0757 (3) | 0.6328 (3) | 0.0812 (8) | |
H16A | 0.4063 | 0.0662 | 0.5487 | 0.122* | |
H16B | 0.2907 | 0.1090 | 0.6377 | 0.122* | |
H16C | 0.3767 | −0.0135 | 0.6297 | 0.122* | |
C17 | 0.4849 (4) | 0.2374 (4) | 0.9569 (3) | 0.1001 (10) | |
H17A | 0.4744 | 0.1524 | 0.9619 | 0.150* | |
H17B | 0.3928 | 0.2732 | 0.9569 | 0.150* | |
H17C | 0.5624 | 0.3050 | 1.0376 | 0.150* | |
C18 | 0.7121 (3) | 0.1391 (3) | 0.7877 (3) | 0.0899 (9) | |
H18A | 0.7028 | 0.0478 | 0.7796 | 0.135* | |
H18B | 0.7869 | 0.2023 | 0.8737 | 0.135* | |
H18C | 0.7403 | 0.1344 | 0.7076 | 0.135* | |
O1 | 0.9113 (3) | 0.6314 (2) | 0.9603 (2) | 0.1024 (7) | |
H1A | 0.9910 | 0.6000 | 0.9420 | 0.154* | |
H1B | 0.9090 | 0.6350 | 1.0380 | 0.154* | |
Cl1 | 1.14370 (9) | 0.44812 (10) | 0.80296 (8) | 0.0961 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Si1 | 0.0616 (4) | 0.0668 (4) | 0.0477 (3) | 0.0106 (3) | 0.0191 (3) | 0.0301 (3) |
N1 | 0.0349 (8) | 0.0565 (9) | 0.0533 (9) | 0.0048 (7) | 0.0145 (7) | 0.0295 (8) |
N2 | 0.0448 (9) | 0.0524 (9) | 0.0460 (8) | 0.0074 (7) | 0.0162 (7) | 0.0251 (7) |
C1 | 0.0401 (9) | 0.0458 (9) | 0.0466 (9) | 0.0086 (7) | 0.0162 (8) | 0.0238 (8) |
C2 | 0.0404 (10) | 0.0611 (12) | 0.0632 (12) | 0.0110 (9) | 0.0240 (9) | 0.0324 (10) |
C3 | 0.0358 (10) | 0.0717 (14) | 0.0673 (13) | 0.0081 (9) | 0.0120 (9) | 0.0339 (11) |
C4 | 0.0471 (12) | 0.0770 (14) | 0.0527 (11) | 0.0088 (10) | 0.0087 (9) | 0.0333 (11) |
C5 | 0.0486 (11) | 0.0686 (13) | 0.0516 (11) | 0.0106 (9) | 0.0193 (9) | 0.0340 (10) |
C6 | 0.0343 (9) | 0.0484 (10) | 0.0507 (10) | 0.0068 (7) | 0.0145 (8) | 0.0260 (8) |
C7 | 0.0418 (10) | 0.0554 (11) | 0.0511 (11) | 0.0031 (8) | 0.0079 (8) | 0.0260 (9) |
C8 | 0.0360 (10) | 0.0667 (13) | 0.0736 (13) | 0.0050 (9) | 0.0216 (9) | 0.0412 (11) |
C9 | 0.0311 (9) | 0.0671 (12) | 0.0673 (12) | 0.0090 (8) | 0.0197 (9) | 0.0400 (10) |
C10 | 0.0529 (13) | 0.1023 (19) | 0.0737 (15) | 0.0312 (13) | 0.0236 (12) | 0.0498 (15) |
C11 | 0.0647 (17) | 0.126 (3) | 0.0702 (17) | 0.0308 (17) | 0.0212 (14) | 0.0299 (17) |
C12 | 0.0684 (18) | 0.0793 (19) | 0.120 (3) | 0.0195 (15) | 0.0432 (18) | 0.0266 (18) |
C13 | 0.087 (2) | 0.088 (2) | 0.146 (3) | 0.0402 (16) | 0.069 (2) | 0.077 (2) |
C14 | 0.0671 (15) | 0.0864 (17) | 0.0943 (18) | 0.0279 (13) | 0.0444 (14) | 0.0631 (15) |
C15 | 0.0599 (12) | 0.0622 (12) | 0.0420 (10) | 0.0129 (10) | 0.0203 (9) | 0.0217 (9) |
C16 | 0.0781 (18) | 0.0771 (17) | 0.0790 (17) | −0.0077 (13) | 0.0151 (14) | 0.0347 (14) |
C17 | 0.142 (3) | 0.111 (2) | 0.0703 (17) | 0.022 (2) | 0.0513 (19) | 0.0526 (17) |
C18 | 0.0818 (19) | 0.093 (2) | 0.088 (2) | 0.0247 (16) | 0.0135 (16) | 0.0423 (17) |
O1 | 0.1114 (17) | 0.0974 (15) | 0.0822 (13) | 0.0288 (13) | 0.0144 (12) | 0.0355 (12) |
Cl1 | 0.0818 (5) | 0.1278 (7) | 0.0780 (5) | 0.0348 (4) | 0.0259 (4) | 0.0465 (4) |
Si1—C18 | 1.834 (3) | C9—C10 | 1.378 (3) |
Si1—C17 | 1.850 (3) | C9—C14 | 1.383 (3) |
Si1—C16 | 1.852 (3) | C10—C11 | 1.380 (4) |
Si1—C15 | 1.890 (2) | C10—H10 | 0.9300 |
N1—C7 | 1.328 (3) | C11—C12 | 1.368 (5) |
N1—C6 | 1.386 (2) | C11—H11 | 0.9300 |
N1—C8 | 1.476 (2) | C12—C13 | 1.367 (5) |
N2—C7 | 1.324 (2) | C12—H12 | 0.9300 |
N2—C1 | 1.387 (2) | C13—C14 | 1.376 (4) |
N2—C15 | 1.478 (2) | C13—H13 | 0.9300 |
C1—C2 | 1.389 (3) | C14—H14 | 0.9300 |
C1—C6 | 1.394 (2) | C15—H15A | 0.9700 |
C2—C3 | 1.374 (3) | C15—H15B | 0.9700 |
C2—H2 | 0.9300 | C16—H16A | 0.9600 |
C3—C4 | 1.398 (3) | C16—H16B | 0.9600 |
C3—H3 | 0.9300 | C16—H16C | 0.9600 |
C4—C5 | 1.369 (3) | C17—H17A | 0.9600 |
C4—H4 | 0.9300 | C17—H17B | 0.9600 |
C5—C6 | 1.384 (3) | C17—H17C | 0.9600 |
C5—H5 | 0.9300 | C18—H18A | 0.9600 |
C7—H7 | 0.9300 | C18—H18B | 0.9600 |
C8—C9 | 1.497 (3) | C18—H18C | 0.9600 |
C8—H8A | 0.9700 | O1—H1A | 0.8598 |
C8—H8B | 0.9700 | O1—H1B | 0.8466 |
C18—Si1—C17 | 111.82 (16) | C14—C9—C8 | 120.0 (2) |
C18—Si1—C16 | 110.58 (15) | C9—C10—C11 | 120.5 (3) |
C17—Si1—C16 | 110.93 (16) | C9—C10—H10 | 119.8 |
C18—Si1—C15 | 107.44 (14) | C11—C10—H10 | 119.8 |
C17—Si1—C15 | 105.86 (13) | C12—C11—C10 | 120.2 (3) |
C16—Si1—C15 | 110.04 (12) | C12—C11—H11 | 119.9 |
C7—N1—C6 | 108.20 (15) | C10—C11—H11 | 119.9 |
C7—N1—C8 | 125.70 (17) | C13—C12—C11 | 119.7 (3) |
C6—N1—C8 | 126.08 (16) | C13—C12—H12 | 120.1 |
C7—N2—C1 | 108.16 (15) | C11—C12—H12 | 120.1 |
C7—N2—C15 | 126.39 (17) | C12—C13—C14 | 120.4 (3) |
C1—N2—C15 | 125.43 (16) | C12—C13—H13 | 119.8 |
N2—C1—C2 | 131.97 (17) | C14—C13—H13 | 119.8 |
N2—C1—C6 | 106.56 (16) | C13—C14—C9 | 120.4 (3) |
C2—C1—C6 | 121.45 (18) | C13—C14—H14 | 119.8 |
C3—C2—C1 | 116.40 (18) | C9—C14—H14 | 119.8 |
C3—C2—H2 | 121.8 | N2—C15—Si1 | 113.64 (13) |
C1—C2—H2 | 121.8 | N2—C15—H15A | 108.8 |
C2—C3—C4 | 122.03 (19) | Si1—C15—H15A | 108.8 |
C2—C3—H3 | 119.0 | N2—C15—H15B | 108.8 |
C4—C3—H3 | 119.0 | Si1—C15—H15B | 108.8 |
C5—C4—C3 | 121.6 (2) | H15A—C15—H15B | 107.7 |
C5—C4—H4 | 119.2 | Si1—C16—H16A | 109.5 |
C3—C4—H4 | 119.2 | Si1—C16—H16B | 109.5 |
C4—C5—C6 | 116.92 (18) | H16A—C16—H16B | 109.5 |
C4—C5—H5 | 121.5 | Si1—C16—H16C | 109.5 |
C6—C5—H5 | 121.5 | H16A—C16—H16C | 109.5 |
C5—C6—N1 | 131.92 (17) | H16B—C16—H16C | 109.5 |
C5—C6—C1 | 121.62 (17) | Si1—C17—H17A | 109.5 |
N1—C6—C1 | 106.41 (16) | Si1—C17—H17B | 109.5 |
N2—C7—N1 | 110.68 (17) | H17A—C17—H17B | 109.5 |
N2—C7—H7 | 124.7 | Si1—C17—H17C | 109.5 |
N1—C7—H7 | 124.7 | H17A—C17—H17C | 109.5 |
N1—C8—C9 | 112.22 (16) | H17B—C17—H17C | 109.5 |
N1—C8—H8A | 109.2 | Si1—C18—H18A | 109.5 |
C9—C8—H8A | 109.2 | Si1—C18—H18B | 109.5 |
N1—C8—H8B | 109.2 | H18A—C18—H18B | 109.5 |
C9—C8—H8B | 109.2 | Si1—C18—H18C | 109.5 |
H8A—C8—H8B | 107.9 | H18A—C18—H18C | 109.5 |
C10—C9—C14 | 118.7 (2) | H18B—C18—H18C | 109.5 |
C10—C9—C8 | 121.3 (2) | H1A—O1—H1B | 107.0 |
C7—N2—C1—C2 | −178.0 (2) | C15—N2—C7—N1 | 178.44 (17) |
C15—N2—C1—C2 | 3.6 (3) | C6—N1—C7—N2 | −0.3 (2) |
C7—N2—C1—C6 | 0.1 (2) | C8—N1—C7—N2 | 178.18 (18) |
C15—N2—C1—C6 | −178.27 (17) | C7—N1—C8—C9 | 109.6 (2) |
N2—C1—C2—C3 | 178.1 (2) | C6—N1—C8—C9 | −72.2 (2) |
C6—C1—C2—C3 | 0.2 (3) | N1—C8—C9—C10 | 108.7 (2) |
C1—C2—C3—C4 | −0.6 (3) | N1—C8—C9—C14 | −72.5 (2) |
C2—C3—C4—C5 | 0.4 (4) | C14—C9—C10—C11 | 2.3 (4) |
C3—C4—C5—C6 | 0.2 (3) | C8—C9—C10—C11 | −178.8 (2) |
C4—C5—C6—N1 | −177.7 (2) | C9—C10—C11—C12 | −0.5 (4) |
C4—C5—C6—C1 | −0.6 (3) | C10—C11—C12—C13 | −1.5 (5) |
C7—N1—C6—C5 | 177.7 (2) | C11—C12—C13—C14 | 1.7 (5) |
C8—N1—C6—C5 | −0.7 (3) | C12—C13—C14—C9 | 0.2 (4) |
C7—N1—C6—C1 | 0.3 (2) | C10—C9—C14—C13 | −2.2 (3) |
C8—N1—C6—C1 | −178.13 (17) | C8—C9—C14—C13 | 179.0 (2) |
N2—C1—C6—C5 | −177.97 (18) | C7—N2—C15—Si1 | −91.7 (2) |
C2—C1—C6—C5 | 0.4 (3) | C1—N2—C15—Si1 | 86.4 (2) |
N2—C1—C6—N1 | −0.2 (2) | C18—Si1—C15—N2 | 60.61 (19) |
C2—C1—C6—N1 | 178.10 (18) | C17—Si1—C15—N2 | −179.77 (18) |
C1—N2—C7—N1 | 0.1 (2) | C16—Si1—C15—N2 | −59.84 (19) |
Cg3 is the centroid of the C9–C14 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···Cl1 | 0.86 | 2.45 | 3.257 (2) | 157 |
O1—H1B···Cl1i | 0.85 | 2.45 | 3.250 (3) | 158 |
C7—H7···O1 | 0.93 | 2.51 | 3.170 (3) | 128 |
C8—H8A···Cl1 | 0.97 | 2.81 | 3.703 (2) | 153 |
C3—H3···Cg3ii | 0.93 | 2.69 | 3.526 (2) | 151 |
Symmetry codes: (i) −x+2, −y+1, −z+2; (ii) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C18H23N2Si+·Cl−·H2O |
Mr | 348.94 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 9.3592 (7), 10.9500 (9), 11.0522 (8) |
α, β, γ (°) | 117.594 (6), 103.295 (6), 92.094 (6) |
V (Å3) | 963.39 (15) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.27 |
Crystal size (mm) | 0.57 × 0.50 × 0.36 |
Data collection | |
Diffractometer | Stoe IPDS 2 diffractometer |
Absorption correction | Integration (X-RED32; Stoe & Cie, 2002) |
Tmin, Tmax | 0.859, 0.909 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12149, 3987, 3241 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.628 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.135, 1.07 |
No. of reflections | 3987 |
No. of parameters | 211 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.32, −0.32 |
Computer programs: X-AREA (Stoe & Cie, 2002), X-RED32 (Stoe & Cie, 2002), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 2008), ORTEPIII (Burnett & Johnson, 1996), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009), WinGX (Farrugia, 1999).
Cg3 is the centroid of the C9–C14 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1A···Cl1 | 0.86 | 2.45 | 3.257 (2) | 157.4 |
O1—H1B···Cl1i | 0.85 | 2.45 | 3.250 (3) | 157.7 |
C7—H7···O1 | 0.93 | 2.51 | 3.170 (3) | 128.1 |
C8—H8A···Cl1 | 0.97 | 2.81 | 3.703 (2) | 153.2 |
C3—H3···Cg3ii | 0.93 | 2.69 | 3.526 (2) | 151.0 |
Symmetry codes: (i) −x+2, −y+1, −z+2; (ii) x−1, y, z. |
Cg1 is the centroid of the N1, C6, C1, N2, C7 ring and Cg2 is the centroid of C1 to C6 ring. Offset is the angle between the centroid-to-centroid and plane-to-plane vectors. |
Centroid–centroid | plane–plane | offset | |
Cg1···Cg2i | 3.5690 (15) | 3.430 (1) | 16.0 |
Cg2···Cg2i | 3.7223 (14) | 3.446 (1) | 22.2 |
Symmetry code: (i) 1-x, 1-y, 1-z. |
Acknowledgements
The authors acknowledge the Faculty of Arts and Sciences, Ondokuz Mayıs University, Turkey, for the use of the Stoe IPDS 2 diffractometer (purchased under grant F.279 of the University Research Fund). HK & NŞ also thank the İnönü University Research Fund (BAPB-2008–60) for financial support of this study.
References
Akkurt, M., Karaca, S., Küçükbay, H., Şireci, N. & Büyükgüngör, O. (2008). Acta Cryst. E64, o809. Web of Science CSD CrossRef IUCr Journals Google Scholar
Akkurt, M., Yalçın, Ş. P., Şireci, N., Küçükbay, H. & Tahir, M. N. (2010). Acta Cryst. E66, m253–m254. Web of Science CSD CrossRef IUCr Journals Google Scholar
Altomare, A., Burla, M. C., Camalli, M., Cascarano, G. L., Giacovazzo, C., Guagliardi, A., Moliterni, A. G. G., Polidori, G. & Spagna, R. (1999). J. Appl. Cryst. 32, 115–119. Web of Science CrossRef CAS IUCr Journals Google Scholar
Burnett, M. N. & Johnson, C. K. (1996). ORTEPIII. Report ORNL-6895. Oak Ridge National Laboratory, Tennessee, USA. Google Scholar
Çetinkaya, B., Çetinkaya, E., Küçükbay, H. & Durmaz, R. (1996). Arzneim. Forsch. Drug Res. 46, 1154–1158. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Galal, S. A., Hegab, K. H., Kassab, A. S., Rodriguez, M. L., Kerwin, S. M., El-Khamry, A. M. A. & El-Diwani, H. I. (2009). Eur. J. Med. Chem. 44, 1500–1508. Web of Science CrossRef PubMed CAS Google Scholar
Huang, S. T., Hsei, I. J. & Chen, C. (2006). Bioorg. Med. Chem. 14, 6106–6119. Web of Science CrossRef PubMed CAS Google Scholar
Küçükbay, H., Çetinkaya, E. & Durmaz, R. (1995). Arzneim. Forsch. Drug Res. 45, 1331–1334. CAS Google Scholar
Küçükbay, H. & Durmaz, B. (1997). Arzneim. Forsch. Drug Res. 47, 667–670. Google Scholar
Küçükbay, H., Durmaz, R., Okuyucu, N. & Günal, S. (2003). Fol. Microbiol. 48, 679–681. Google Scholar
Küçükbay, H., Durmaz, R., Okuyucu, N., Günal, S. & Kazaz, C. (2004). Arzneim. Forsch./Drug Res. 54, 64–68. Google Scholar
Küçükbay, H., Durmaz, R., Şireci, N. & Günal, S. (2010). Asian J. Chem. 22, 2816–2824. Google Scholar
Lukevics, E., Arsenyan, P., Shestakova, I., Domracheva, I., Nesterova, A. & Pudova, O. (2001). Eur. J. Med. Chem. 36, 507–515. Web of Science CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Singh, A. K. & Lown, J. W. (2000). Anticancer Drug Des. 15, 265–275. Web of Science PubMed CAS Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Stoe & Cie (2002). X-AREA and X-RED32. Stoe & Cie, Darmstadt, Germany. Google Scholar
Tavman, A., Birteksöz, S. & Ötük, G. (2005). Folia Mirobiol., 50, 467–472. Web of Science CrossRef CAS Google Scholar
Turner, P. R. & Denny, W. A. (1996). Mutat. Res. 355, 141–169. CrossRef PubMed Web of Science Google Scholar
Williams, D. A., Lemke, T. L. & Foye, O. (2002). Foye's Principles of Medicinal Chemistry, 5th ed. Philadelphia, USA: Lippincott Williams and Wilkins. Google Scholar
Yılmaz, Ü. & Küçükbay, H. (2009). Asian J. Chem. 21, 6149–6155. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Although there are different antibacterial and antifungal drugs used in the treatment of bacterial and fungal infections, some of them have undesirable side effects. In addition, some of them become less effective due to the development of resistance to these drugs (Williams et al., 2002). Therefore, many clinically effective antibacterial and antifungal drugs have become less effective due to the development of resistance to these drugs. Since, benzimidazole compounds have been found to have a broad range of pharmacological activity, many research groups as well as our group have been interested in these type of heterocyclic compounds (Singh et al., 2000; Huang et al. 2006; Turner & Denny, 1996; Lukevics et al., 2001; Galal et al. 2009; Çetinkaya et al., 1996; Küçükbay et al., 1995, 1997, 2003, 2004, 2010; Yılmaz & Küçükbay, 2009; Tavman et al., 2005). In recent years, considerable attention has been given to the synthesis of alkylsilyl substituted benzimidazole derivatives because of their properties in cancer therapy. For example, 1-(3-trimethylsilylpropyl)benzimidazole inhibits carcinoma S-180 tumour growth in dose 1 mg.kg-1 by 62% (on ICR mice) (Lukevics et al., 2001). These properties of silylsubstituted benzimidazole compounds, triggered us to synthesis novel trimethylsilyl substituted benzimidazole compounds. The objectives of this study were to synthesize and elucidate the crystal structure of the title compound, 1-benzyl-3-trimethylsilylmethylbenzimidazolium chloride monohydrate, (I).
In the title molecule, (Fig. 1), the benzimidazole ring system (N1/N2/C1–C7) is approximately planar, with maximum deviations of -0.022 (2) Å for C6, -0.018 (2) for C1 and 0.015 (2) for C7. The benzimidazole (N1/N2/C1–C7) and phenyl (C9–C14) systems make an angle of 74.80 (12)°. The values of the geometric parameters in (I) are comparable with those observed for other similar compounds (Akkurt et al., 2008, 2010). The average value of the Si—C bond length is 1.854 (4) Å. The angles around the Si atoms with a distorted tetrahedral geometry rang from 105.86 (16)° to 111.81 (16)°.
The crystal packing of (I) is stabilized by O—H···Cl, C—H···Cl and C—H···π interactions between symmetry-related molecules (Fig. 2 and Table 1), together with π-π stacking interactions between imidazolium and benzene (Table 2).