organic compounds
3β-Hydroxylup-20(29)-en-28-yl 1H-imidazole-1-carboxylate
aLaboratório de Química Farmacêutica, Faculdade de Farmácia, Universidade de Coimbra, Pólo das Ciências da Saúde, Azinhaga de Santa Comba, P-3000-548 Coimbra, Portugal, and bCEMDRX, Departamento de Física, Faculdade de Ciências e Tecnologia, Universidade de Coimbra, P-3004-516 Coimbra, Portugal
*Correspondence e-mail: jap@pollux.fis.uc.pt
The title triterpene, C34H52N2O3, is a C-28 carbamate derivative of betulin prepared in a one-step reaction from the commercially available 1,1′-carbonyldiimidazole (CDI). All rings are fused trans. The X-ray study shows the retention of the configuration of C-28 with respect to the known chiral centres of the molecule. In the crystal, the molecules are O—H⋯O hydrogen bonded via the hydroxy group and the carbonyl group of the carbamate function into chains running along the c axis. A quantum-mechanical ab initio Roothaan Hartree–Fock calculation of the equilibrium geometry of the isolated molecule gives values for bond-lengths and valency angles close to the experimental values. The calculations also reproduce the molecular conformation well, with calculated puckering parameters that agree well with the observed values.
Related literature
For the synthesis of the title compound, see: Santos et al. (2009). For the biological activity of betulin and betulinic acid, see: Dzubak et al. (2006); Tolstikova et al. (2006); Petronelli et al. (2009). For plant triterpenes as potential anti-cancer drugs, see: Kinghorn et al. (2004); Setzer & Setzer (2003). For products afforded by the reaction of CDI with and see: Tang et al. (2004); Totleben et al. (1997); Herbez & Fischer (2005); Moreira et al. (2008); Ramos Silva et al. (2007). For puckering and asymmetry parameters, see: Cremer & Pople (1975); Duax & Norton (1975). The quantum chemical calculations were performed with the computer program GAMESS (Schmidt et al., 1993).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2006); cell SAINT (Bruker, 2006); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S160053681002489X/ez2217sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681002489X/ez2217Isup2.hkl
All reagents were obtained from Sigma-Aldrich Co. THF was dried and purified before use according to standard procedures. A solution of betulin (200 mg, 0.45 mmol) and CDI (219 mg, 1.35 mmol) was refluxed in anyhdrous THF (8 ml). After 7 h the reaction was complete (TLC control). Water (30 ml) was added to the mixture and the resulting precipitate was dissolved in ethyl ether (50 ml). The aqueous phase was extracted twice with diethyl ether (2 x 30 ml). The organic phase was then washed with water (30 ml), brine (30 ml), dried with anhydrous Na2SO4, filtered, and concentrated under reduced pressure to give a yellowish solid. This solid was submitted to f.c.c. with petroleum ether 40–60°C/ethyl acetate (3:2) and afforded the title compound (246 mg, 82%). Full analytical details for this compound (MS, IR, 1H and 13C NMR spectroscopy data) can be found in Santos et al., 2009. Recrystallization from acetone at room temperature gave colourless single crystals suitable for X-ray diffraction.
Ab initio calculations were based on a
Roothaan Hartree-Fock method using an extended 6–31 G(d,p) basis set. Tight conditions for convergence of both the self-consistent field cycles and maximum density and energy gradient variations were imposed (10-6 atomic units). The program was run on the Milipeia cluster of UC-LCA (using 16 Opteron cores at 2.2 GHz, runing Linux).All H atoms attached to C atoms were refined as riding on their parent atoms using SHELXL97 defaults. The H atom of the hydroxyl group was refined using an HFIX 147 instruction with Uiso= 1.5 Ueq of the O atom. The α wavelength, but was known from the synthetic route. Friedel pairs were merged for the refinement.
was not determined from the X-ray data, as the molecule lacks any strong anomalous scatterers at the Mo KData collection: APEX2 (Bruker, 2006); cell
SAINT (Bruker, 2006); data reduction: SAINT (Bruker, 2006); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C34H52N2O3 | Dx = 1.197 Mg m−3 |
Mr = 536.78 | Melting point: 476 K |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 3394 reflections |
a = 8.2575 (2) Å | θ = 2.6–19.6° |
b = 12.3909 (4) Å | µ = 0.08 mm−1 |
c = 29.0992 (8) Å | T = 293 K |
V = 2977.37 (15) Å3 | Block, colourless |
Z = 4 | 0.25 × 0.22 × 0.18 mm |
F(000) = 1176 |
Bruker APEXII CCD area-detector diffractometer | 3117 independent reflections |
Radiation source: fine-focus sealed tube | 2106 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.111 |
ϕ and ω scans | θmax = 25.4°, θmin = 1.4° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | h = −9→9 |
Tmin = 0.898, Tmax = 1.0 | k = −14→14 |
54547 measured reflections | l = −35→35 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.049 | H-atom parameters constrained |
wR(F2) = 0.119 | w = 1/[σ2(Fo2) + (0.0588P)2 + 0.259P] where P = (Fo2 + 2Fc2)/3 |
S = 1.02 | (Δ/σ)max < 0.001 |
3117 reflections | Δρmax = 0.17 e Å−3 |
360 parameters | Δρmin = −0.20 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0030 (6) |
C34H52N2O3 | V = 2977.37 (15) Å3 |
Mr = 536.78 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 8.2575 (2) Å | µ = 0.08 mm−1 |
b = 12.3909 (4) Å | T = 293 K |
c = 29.0992 (8) Å | 0.25 × 0.22 × 0.18 mm |
Bruker APEXII CCD area-detector diffractometer | 3117 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2000) | 2106 reflections with I > 2σ(I) |
Tmin = 0.898, Tmax = 1.0 | Rint = 0.111 |
54547 measured reflections |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.119 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.17 e Å−3 |
3117 reflections | Δρmin = −0.20 e Å−3 |
360 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O3A | 1.2324 (3) | 0.9802 (3) | −0.21004 (8) | 0.0692 (9) | |
H3A | 1.1856 | 0.9476 | −0.2307 | 0.104* | |
O28A | 0.3667 (3) | 1.0883 (2) | 0.12637 (8) | 0.0487 (7) | |
O28B | 0.3861 (3) | 1.1078 (3) | 0.20317 (9) | 0.0608 (8) | |
N28A | 0.1558 (3) | 1.1559 (2) | 0.16449 (11) | 0.0456 (8) | |
N28B | −0.0758 (4) | 1.2165 (3) | 0.13709 (15) | 0.0720 (11) | |
C1 | 1.1881 (4) | 0.9825 (3) | −0.08289 (11) | 0.0431 (10) | |
H1A | 1.2619 | 1.0103 | −0.0598 | 0.052* | |
H1B | 1.1784 | 0.9052 | −0.0782 | 0.052* | |
C2 | 1.2598 (4) | 1.0030 (4) | −0.13052 (11) | 0.0472 (10) | |
H2A | 1.2766 | 1.0799 | −0.1346 | 0.057* | |
H2B | 1.3643 | 0.9676 | −0.1328 | 0.057* | |
C3 | 1.1511 (4) | 0.9619 (3) | −0.16763 (11) | 0.0447 (9) | |
H3 | 1.1410 | 0.8837 | −0.1636 | 0.054* | |
C4 | 0.9786 (4) | 1.0102 (3) | −0.16640 (12) | 0.0403 (9) | |
C5 | 0.9112 (4) | 0.9973 (3) | −0.11667 (11) | 0.0351 (8) | |
H5 | 0.9023 | 0.9191 | −0.1124 | 0.042* | |
C6 | 0.7385 (4) | 1.0385 (3) | −0.11032 (11) | 0.0449 (10) | |
H6A | 0.7396 | 1.1166 | −0.1081 | 0.054* | |
H6B | 0.6739 | 1.0187 | −0.1369 | 0.054* | |
C7 | 0.6626 (4) | 0.9911 (3) | −0.06708 (11) | 0.0452 (10) | |
H7A | 0.6511 | 0.9138 | −0.0711 | 0.054* | |
H7B | 0.5549 | 1.0211 | −0.0634 | 0.054* | |
C8 | 0.7600 (4) | 1.0123 (3) | −0.02291 (11) | 0.0354 (8) | |
C9 | 0.9435 (4) | 0.9876 (3) | −0.03140 (11) | 0.0342 (8) | |
H9 | 0.9479 | 0.9092 | −0.0358 | 0.041* | |
C10 | 1.0205 (4) | 1.0351 (3) | −0.07616 (11) | 0.0350 (8) | |
C11 | 1.0414 (4) | 1.0077 (3) | 0.01245 (11) | 0.0421 (9) | |
H11A | 1.1537 | 0.9890 | 0.0069 | 0.051* | |
H11B | 1.0369 | 1.0839 | 0.0200 | 0.051* | |
C12 | 0.9792 (4) | 0.9427 (3) | 0.05311 (11) | 0.0390 (9) | |
H12A | 1.0394 | 0.9628 | 0.0804 | 0.047* | |
H12B | 0.9980 | 0.8666 | 0.0474 | 0.047* | |
C13 | 0.7987 (4) | 0.9610 (3) | 0.06169 (10) | 0.0334 (8) | |
H13 | 0.7858 | 1.0383 | 0.0678 | 0.040* | |
C14 | 0.6979 (4) | 0.9367 (3) | 0.01754 (11) | 0.0346 (8) | |
C15 | 0.5141 (4) | 0.9542 (3) | 0.02663 (12) | 0.0455 (10) | |
H15A | 0.4933 | 1.0311 | 0.0280 | 0.055* | |
H15B | 0.4539 | 0.9255 | 0.0007 | 0.055* | |
C16 | 0.4497 (4) | 0.9020 (3) | 0.07071 (12) | 0.0470 (10) | |
H16A | 0.3380 | 0.9237 | 0.0754 | 0.056* | |
H16B | 0.4520 | 0.8241 | 0.0674 | 0.056* | |
C17 | 0.5496 (4) | 0.9344 (3) | 0.11233 (12) | 0.0376 (9) | |
C18 | 0.7289 (4) | 0.9020 (3) | 0.10367 (11) | 0.0365 (9) | |
H18 | 0.7282 | 0.8250 | 0.0959 | 0.044* | |
C19 | 0.8096 (4) | 0.9114 (3) | 0.15107 (11) | 0.0403 (9) | |
H19 | 0.8379 | 0.9874 | 0.1560 | 0.048* | |
C20 | 0.9578 (5) | 0.8441 (3) | 0.16120 (13) | 0.0477 (10) | |
C21 | 0.6699 (5) | 0.8817 (4) | 0.18491 (13) | 0.0552 (11) | |
H21A | 0.6939 | 0.8144 | 0.2005 | 0.066* | |
H21B | 0.6571 | 0.9379 | 0.2079 | 0.066* | |
C22 | 0.5159 (4) | 0.8707 (3) | 0.15669 (13) | 0.0466 (10) | |
H22A | 0.4240 | 0.9008 | 0.1730 | 0.056* | |
H22B | 0.4938 | 0.7955 | 0.1499 | 0.056* | |
C23 | 0.9800 (6) | 1.1274 (3) | −0.18353 (14) | 0.0609 (12) | |
H23A | 1.0188 | 1.1295 | −0.2146 | 0.091* | |
H23B | 1.0499 | 1.1699 | −0.1643 | 0.091* | |
H23C | 0.8722 | 1.1563 | −0.1824 | 0.091* | |
C24 | 0.8719 (5) | 0.9437 (4) | −0.19920 (12) | 0.0549 (11) | |
H24A | 0.7664 | 0.9760 | −0.2012 | 0.082* | |
H24B | 0.8620 | 0.8714 | −0.1877 | 0.082* | |
H24C | 0.9206 | 0.9422 | −0.2291 | 0.082* | |
C25 | 1.0456 (5) | 1.1586 (3) | −0.07340 (13) | 0.0534 (11) | |
H25A | 1.0781 | 1.1780 | −0.0428 | 0.080* | |
H25B | 0.9461 | 1.1946 | −0.0809 | 0.080* | |
H25C | 1.1282 | 1.1799 | −0.0948 | 0.080* | |
C26 | 0.7317 (5) | 1.1319 (3) | −0.01023 (12) | 0.0494 (10) | |
H26A | 0.7605 | 1.1768 | −0.0358 | 0.074* | |
H26B | 0.7974 | 1.1505 | 0.0158 | 0.074* | |
H26C | 0.6196 | 1.1427 | −0.0028 | 0.074* | |
C27 | 0.7156 (5) | 0.8154 (3) | 0.00488 (12) | 0.0455 (10) | |
H27A | 0.6582 | 0.7723 | 0.0269 | 0.068* | |
H27B | 0.8281 | 0.7959 | 0.0051 | 0.068* | |
H27C | 0.6715 | 0.8031 | −0.0252 | 0.068* | |
C28 | 0.5360 (4) | 1.0553 (3) | 0.12224 (13) | 0.0461 (10) | |
H28A | 0.5927 | 1.0719 | 0.1506 | 0.055* | |
H28B | 0.5870 | 1.0956 | 0.0976 | 0.055* | |
C28A | 0.3144 (4) | 1.1153 (3) | 0.16739 (14) | 0.0452 (9) | |
C28B | 0.0639 (5) | 1.1753 (3) | 0.12673 (15) | 0.0536 (11) | |
H28C | 0.0974 | 1.1608 | 0.0968 | 0.064* | |
C28C | −0.0750 (6) | 1.2231 (4) | 0.18384 (19) | 0.0810 (16) | |
H28D | −0.1615 | 1.2487 | 0.2012 | 0.097* | |
C28D | 0.0650 (5) | 1.1884 (4) | 0.20191 (16) | 0.0702 (14) | |
H28E | 0.0945 | 1.1867 | 0.2327 | 0.084* | |
C29 | 0.9945 (6) | 0.7521 (4) | 0.13855 (17) | 0.0801 (15) | |
H29A | 1.0819 | 0.7103 | 0.1480 | 0.096* | |
H29B | 0.9324 | 0.7306 | 0.1135 | 0.096* | |
C30 | 1.0532 (6) | 0.8776 (4) | 0.19981 (16) | 0.0818 (16) | |
H30A | 1.1456 | 0.8311 | 0.2028 | 0.123* | |
H30B | 0.9890 | 0.8735 | 0.2273 | 0.123* | |
H30C | 1.0889 | 0.9506 | 0.1953 | 0.123* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O3A | 0.0532 (18) | 0.118 (3) | 0.0366 (15) | −0.0123 (18) | 0.0124 (13) | −0.0020 (16) |
O28A | 0.0432 (15) | 0.0619 (18) | 0.0411 (15) | 0.0164 (13) | 0.0093 (12) | −0.0033 (14) |
O28B | 0.0542 (17) | 0.083 (2) | 0.0449 (17) | 0.0161 (16) | −0.0023 (14) | 0.0079 (16) |
N28A | 0.0382 (16) | 0.0482 (19) | 0.0505 (19) | 0.0132 (15) | 0.0066 (16) | 0.0009 (17) |
N28B | 0.054 (2) | 0.071 (3) | 0.091 (3) | 0.020 (2) | −0.016 (2) | −0.009 (2) |
C1 | 0.0292 (18) | 0.063 (3) | 0.038 (2) | −0.0043 (19) | −0.0011 (15) | 0.0032 (19) |
C2 | 0.034 (2) | 0.070 (3) | 0.038 (2) | −0.005 (2) | 0.0047 (16) | 0.001 (2) |
C3 | 0.041 (2) | 0.060 (3) | 0.034 (2) | −0.0035 (18) | 0.0061 (18) | 0.0000 (19) |
C4 | 0.043 (2) | 0.048 (2) | 0.0300 (19) | −0.0036 (18) | −0.0006 (17) | 0.0017 (18) |
C5 | 0.0328 (18) | 0.040 (2) | 0.0322 (19) | −0.0014 (17) | −0.0038 (15) | 0.0012 (17) |
C6 | 0.038 (2) | 0.058 (3) | 0.039 (2) | 0.0024 (19) | −0.0030 (17) | 0.0054 (19) |
C7 | 0.0283 (17) | 0.065 (3) | 0.042 (2) | 0.0008 (19) | −0.0018 (16) | −0.001 (2) |
C8 | 0.0311 (18) | 0.039 (2) | 0.0362 (19) | 0.0052 (16) | −0.0016 (15) | −0.0024 (17) |
C9 | 0.0282 (17) | 0.043 (2) | 0.0319 (19) | −0.0013 (16) | −0.0053 (15) | −0.0007 (16) |
C10 | 0.0297 (19) | 0.040 (2) | 0.035 (2) | −0.0021 (16) | 0.0007 (16) | −0.0016 (16) |
C11 | 0.0297 (18) | 0.065 (3) | 0.0313 (19) | −0.0065 (19) | −0.0005 (15) | −0.0022 (19) |
C12 | 0.0309 (18) | 0.052 (2) | 0.034 (2) | 0.0016 (18) | −0.0033 (16) | −0.0058 (17) |
C13 | 0.0308 (18) | 0.038 (2) | 0.0311 (18) | −0.0021 (15) | 0.0020 (15) | −0.0038 (16) |
C14 | 0.0269 (17) | 0.042 (2) | 0.0349 (19) | −0.0031 (16) | 0.0042 (15) | −0.0044 (16) |
C15 | 0.0309 (19) | 0.062 (3) | 0.043 (2) | 0.0027 (18) | −0.0013 (17) | −0.0008 (19) |
C16 | 0.0302 (18) | 0.060 (3) | 0.050 (2) | 0.0003 (19) | 0.0032 (18) | −0.002 (2) |
C17 | 0.036 (2) | 0.036 (2) | 0.041 (2) | 0.0021 (17) | 0.0088 (17) | −0.0011 (17) |
C18 | 0.0317 (18) | 0.040 (2) | 0.038 (2) | 0.0027 (16) | 0.0008 (16) | −0.0015 (17) |
C19 | 0.042 (2) | 0.040 (2) | 0.039 (2) | −0.0010 (17) | −0.0004 (17) | −0.0028 (18) |
C20 | 0.044 (2) | 0.056 (3) | 0.043 (2) | −0.002 (2) | 0.004 (2) | 0.016 (2) |
C21 | 0.060 (3) | 0.062 (3) | 0.045 (2) | 0.002 (2) | 0.007 (2) | 0.005 (2) |
C22 | 0.043 (2) | 0.045 (2) | 0.051 (2) | 0.0038 (18) | 0.0128 (19) | 0.0057 (19) |
C23 | 0.070 (3) | 0.060 (3) | 0.053 (3) | 0.003 (2) | −0.002 (2) | 0.021 (2) |
C24 | 0.049 (2) | 0.076 (3) | 0.040 (2) | −0.008 (2) | −0.0032 (19) | 0.000 (2) |
C25 | 0.063 (3) | 0.048 (3) | 0.049 (2) | −0.015 (2) | 0.003 (2) | −0.006 (2) |
C26 | 0.050 (2) | 0.049 (3) | 0.050 (2) | 0.006 (2) | 0.0109 (19) | 0.0034 (19) |
C27 | 0.045 (2) | 0.045 (2) | 0.046 (2) | −0.0104 (19) | −0.0012 (19) | −0.0084 (18) |
C28 | 0.038 (2) | 0.052 (3) | 0.047 (2) | 0.0067 (19) | 0.0117 (18) | 0.0009 (19) |
C28A | 0.042 (2) | 0.044 (2) | 0.050 (3) | 0.0037 (19) | 0.005 (2) | 0.005 (2) |
C28B | 0.057 (3) | 0.050 (3) | 0.054 (3) | 0.002 (2) | −0.010 (2) | −0.004 (2) |
C28C | 0.057 (3) | 0.098 (4) | 0.088 (4) | 0.033 (3) | 0.009 (3) | −0.011 (3) |
C28D | 0.061 (3) | 0.095 (4) | 0.054 (3) | 0.024 (3) | 0.008 (2) | −0.009 (3) |
C29 | 0.076 (3) | 0.069 (3) | 0.095 (4) | 0.028 (3) | −0.025 (3) | −0.018 (3) |
C30 | 0.064 (3) | 0.110 (4) | 0.072 (3) | 0.004 (3) | −0.010 (3) | −0.004 (3) |
O3A—C3 | 1.423 (4) | C14—C15 | 1.555 (4) |
O3A—H3A | 0.8200 | C15—C16 | 1.532 (5) |
O28A—C28A | 1.312 (4) | C15—H15A | 0.9700 |
O28A—C28 | 1.462 (4) | C15—H15B | 0.9700 |
O28B—C28A | 1.201 (4) | C16—C17 | 1.520 (5) |
N28A—C28B | 1.357 (5) | C16—H16A | 0.9700 |
N28A—C28D | 1.382 (5) | C16—H16B | 0.9700 |
N28A—C28A | 1.406 (5) | C17—C28 | 1.529 (5) |
N28B—C28B | 1.297 (5) | C17—C22 | 1.539 (5) |
N28B—C28C | 1.363 (6) | C17—C18 | 1.555 (5) |
C1—C2 | 1.528 (4) | C18—C19 | 1.536 (4) |
C1—C10 | 1.543 (5) | C18—H18 | 0.9800 |
C1—H1A | 0.9700 | C19—C20 | 1.510 (5) |
C1—H1B | 0.9700 | C19—C21 | 1.561 (5) |
C2—C3 | 1.494 (5) | C19—H19 | 0.9800 |
C2—H2A | 0.9700 | C20—C29 | 1.352 (6) |
C2—H2B | 0.9700 | C20—C30 | 1.433 (6) |
C3—C4 | 1.546 (5) | C21—C22 | 1.520 (5) |
C3—H3 | 0.9800 | C21—H21A | 0.9700 |
C4—C23 | 1.535 (5) | C21—H21B | 0.9700 |
C4—C24 | 1.539 (5) | C22—H22A | 0.9700 |
C4—C5 | 1.559 (5) | C22—H22B | 0.9700 |
C5—C6 | 1.526 (5) | C23—H23A | 0.9600 |
C5—C10 | 1.557 (5) | C23—H23B | 0.9600 |
C5—H5 | 0.9800 | C23—H23C | 0.9600 |
C6—C7 | 1.524 (4) | C24—H24A | 0.9600 |
C6—H6A | 0.9700 | C24—H24B | 0.9600 |
C6—H6B | 0.9700 | C24—H24C | 0.9600 |
C7—C8 | 1.539 (5) | C25—H25A | 0.9600 |
C7—H7A | 0.9700 | C25—H25B | 0.9600 |
C7—H7B | 0.9700 | C25—H25C | 0.9600 |
C8—C26 | 1.545 (5) | C26—H26A | 0.9600 |
C8—C9 | 1.566 (4) | C26—H26B | 0.9600 |
C8—C14 | 1.590 (5) | C26—H26C | 0.9600 |
C9—C11 | 1.531 (4) | C27—H27A | 0.9600 |
C9—C10 | 1.565 (4) | C27—H27B | 0.9600 |
C9—H9 | 0.9800 | C27—H27C | 0.9600 |
C10—C25 | 1.547 (5) | C28—H28A | 0.9700 |
C11—C12 | 1.520 (4) | C28—H28B | 0.9700 |
C11—H11A | 0.9700 | C28B—H28C | 0.9300 |
C11—H11B | 0.9700 | C28C—C28D | 1.341 (6) |
C12—C13 | 1.528 (4) | C28C—H28D | 0.9300 |
C12—H12A | 0.9700 | C28D—H28E | 0.9300 |
C12—H12B | 0.9700 | C29—H29A | 0.9300 |
C13—C18 | 1.536 (4) | C29—H29B | 0.9300 |
C13—C14 | 1.560 (4) | C30—H30A | 0.9600 |
C13—H13 | 0.9800 | C30—H30B | 0.9600 |
C14—C27 | 1.554 (5) | C30—H30C | 0.9600 |
C3—O3A—H3A | 109.5 | C17—C16—C15 | 111.5 (3) |
C28A—O28A—C28 | 117.4 (3) | C17—C16—H16A | 109.3 |
C28B—N28A—C28D | 106.5 (3) | C15—C16—H16A | 109.3 |
C28B—N28A—C28A | 129.3 (4) | C17—C16—H16B | 109.3 |
C28D—N28A—C28A | 124.2 (4) | C15—C16—H16B | 109.3 |
C28B—N28B—C28C | 104.6 (4) | H16A—C16—H16B | 108.0 |
C2—C1—C10 | 113.1 (3) | C16—C17—C28 | 111.7 (3) |
C2—C1—H1A | 109.0 | C16—C17—C22 | 115.8 (3) |
C10—C1—H1A | 109.0 | C28—C17—C22 | 109.3 (3) |
C2—C1—H1B | 109.0 | C16—C17—C18 | 108.6 (3) |
C10—C1—H1B | 109.0 | C28—C17—C18 | 110.7 (3) |
H1A—C1—H1B | 107.8 | C22—C17—C18 | 100.1 (3) |
C3—C2—C1 | 111.5 (3) | C13—C18—C19 | 121.0 (3) |
C3—C2—H2A | 109.3 | C13—C18—C17 | 111.3 (3) |
C1—C2—H2A | 109.3 | C19—C18—C17 | 104.4 (3) |
C3—C2—H2B | 109.3 | C13—C18—H18 | 106.4 |
C1—C2—H2B | 109.3 | C19—C18—H18 | 106.4 |
H2A—C2—H2B | 108.0 | C17—C18—H18 | 106.4 |
O3A—C3—C2 | 106.8 (3) | C20—C19—C18 | 119.0 (3) |
O3A—C3—C4 | 113.1 (3) | C20—C19—C21 | 110.2 (3) |
C2—C3—C4 | 113.9 (3) | C18—C19—C21 | 103.2 (3) |
O3A—C3—H3 | 107.6 | C20—C19—H19 | 108.0 |
C2—C3—H3 | 107.6 | C18—C19—H19 | 108.0 |
C4—C3—H3 | 107.6 | C21—C19—H19 | 108.0 |
C23—C4—C24 | 108.0 (3) | C29—C20—C30 | 120.2 (4) |
C23—C4—C3 | 110.6 (3) | C29—C20—C19 | 123.5 (4) |
C24—C4—C3 | 107.8 (3) | C30—C20—C19 | 116.0 (4) |
C23—C4—C5 | 113.7 (3) | C22—C21—C19 | 107.4 (3) |
C24—C4—C5 | 108.4 (3) | C22—C21—H21A | 110.2 |
C3—C4—C5 | 108.1 (3) | C19—C21—H21A | 110.2 |
C6—C5—C10 | 110.4 (3) | C22—C21—H21B | 110.2 |
C6—C5—C4 | 114.3 (3) | C19—C21—H21B | 110.2 |
C10—C5—C4 | 117.7 (3) | H21A—C21—H21B | 108.5 |
C6—C5—H5 | 104.2 | C21—C22—C17 | 104.8 (3) |
C10—C5—H5 | 104.2 | C21—C22—H22A | 110.8 |
C4—C5—H5 | 104.2 | C17—C22—H22A | 110.8 |
C7—C6—C5 | 110.8 (3) | C21—C22—H22B | 110.8 |
C7—C6—H6A | 109.5 | C17—C22—H22B | 110.8 |
C5—C6—H6A | 109.5 | H22A—C22—H22B | 108.9 |
C7—C6—H6B | 109.5 | C4—C23—H23A | 109.5 |
C5—C6—H6B | 109.5 | C4—C23—H23B | 109.5 |
H6A—C6—H6B | 108.1 | H23A—C23—H23B | 109.5 |
C6—C7—C8 | 114.1 (3) | C4—C23—H23C | 109.5 |
C6—C7—H7A | 108.7 | H23A—C23—H23C | 109.5 |
C8—C7—H7A | 108.7 | H23B—C23—H23C | 109.5 |
C6—C7—H7B | 108.7 | C4—C24—H24A | 109.5 |
C8—C7—H7B | 108.7 | C4—C24—H24B | 109.5 |
H7A—C7—H7B | 107.6 | H24A—C24—H24B | 109.5 |
C7—C8—C26 | 106.5 (3) | C4—C24—H24C | 109.5 |
C7—C8—C9 | 109.9 (3) | H24A—C24—H24C | 109.5 |
C26—C8—C9 | 111.8 (3) | H24B—C24—H24C | 109.5 |
C7—C8—C14 | 110.4 (3) | C10—C25—H25A | 109.5 |
C26—C8—C14 | 109.9 (3) | C10—C25—H25B | 109.5 |
C9—C8—C14 | 108.3 (3) | H25A—C25—H25B | 109.5 |
C11—C9—C10 | 114.7 (3) | C10—C25—H25C | 109.5 |
C11—C9—C8 | 110.3 (3) | H25A—C25—H25C | 109.5 |
C10—C9—C8 | 116.8 (3) | H25B—C25—H25C | 109.5 |
C11—C9—H9 | 104.5 | C8—C26—H26A | 109.5 |
C10—C9—H9 | 104.5 | C8—C26—H26B | 109.5 |
C8—C9—H9 | 104.5 | H26A—C26—H26B | 109.5 |
C1—C10—C25 | 107.8 (3) | C8—C26—H26C | 109.5 |
C1—C10—C5 | 107.2 (3) | H26A—C26—H26C | 109.5 |
C25—C10—C5 | 114.5 (3) | H26B—C26—H26C | 109.5 |
C1—C10—C9 | 108.1 (3) | C14—C27—H27A | 109.5 |
C25—C10—C9 | 112.6 (3) | C14—C27—H27B | 109.5 |
C5—C10—C9 | 106.3 (3) | H27A—C27—H27B | 109.5 |
C12—C11—C9 | 112.6 (3) | C14—C27—H27C | 109.5 |
C12—C11—H11A | 109.1 | H27A—C27—H27C | 109.5 |
C9—C11—H11A | 109.1 | H27B—C27—H27C | 109.5 |
C12—C11—H11B | 109.1 | O28A—C28—C17 | 111.1 (3) |
C9—C11—H11B | 109.1 | O28A—C28—H28A | 109.4 |
H11A—C11—H11B | 107.8 | C17—C28—H28A | 109.4 |
C11—C12—C13 | 112.2 (3) | O28A—C28—H28B | 109.4 |
C11—C12—H12A | 109.2 | C17—C28—H28B | 109.4 |
C13—C12—H12A | 109.2 | H28A—C28—H28B | 108.0 |
C11—C12—H12B | 109.2 | O28B—C28A—O28A | 127.3 (3) |
C13—C12—H12B | 109.2 | O28B—C28A—N28A | 122.6 (4) |
H12A—C12—H12B | 107.9 | O28A—C28A—N28A | 110.1 (3) |
C12—C13—C18 | 115.1 (3) | N28B—C28B—N28A | 112.2 (4) |
C12—C13—C14 | 110.9 (3) | N28B—C28B—H28C | 123.9 |
C18—C13—C14 | 111.3 (3) | N28A—C28B—H28C | 123.9 |
C12—C13—H13 | 106.3 | C28D—C28C—N28B | 112.1 (4) |
C18—C13—H13 | 106.3 | C28D—C28C—H28D | 124.0 |
C14—C13—H13 | 106.3 | N28B—C28C—H28D | 124.0 |
C27—C14—C15 | 105.5 (3) | C28C—C28D—N28A | 104.6 (4) |
C27—C14—C13 | 109.4 (3) | C28C—C28D—H28E | 127.7 |
C15—C14—C13 | 110.7 (3) | N28A—C28D—H28E | 127.7 |
C27—C14—C8 | 111.4 (3) | C20—C29—H29A | 120.0 |
C15—C14—C8 | 111.0 (3) | C20—C29—H29B | 120.0 |
C13—C14—C8 | 108.9 (3) | H29A—C29—H29B | 120.0 |
C16—C15—C14 | 115.0 (3) | C20—C30—H30A | 109.5 |
C16—C15—H15A | 108.5 | C20—C30—H30B | 109.5 |
C14—C15—H15A | 108.5 | H30A—C30—H30B | 109.5 |
C16—C15—H15B | 108.5 | C20—C30—H30C | 109.5 |
C14—C15—H15B | 108.5 | H30A—C30—H30C | 109.5 |
H15A—C15—H15B | 107.5 | H30B—C30—H30C | 109.5 |
C10—C1—C2—C3 | −58.5 (4) | C9—C8—C14—C27 | −60.7 (3) |
C1—C2—C3—O3A | −177.2 (3) | C7—C8—C14—C15 | −57.6 (4) |
C1—C2—C3—C4 | 57.1 (4) | C26—C8—C14—C15 | 59.6 (4) |
O3A—C3—C4—C23 | −48.1 (4) | C9—C8—C14—C15 | −178.0 (3) |
C2—C3—C4—C23 | 74.1 (4) | C7—C8—C14—C13 | −179.7 (3) |
O3A—C3—C4—C24 | 69.8 (4) | C26—C8—C14—C13 | −62.5 (3) |
C2—C3—C4—C24 | −168.0 (3) | C9—C8—C14—C13 | 59.9 (3) |
O3A—C3—C4—C5 | −173.2 (3) | C27—C14—C15—C16 | 70.6 (4) |
C2—C3—C4—C5 | −51.0 (4) | C13—C14—C15—C16 | −47.6 (4) |
C23—C4—C5—C6 | 58.6 (4) | C8—C14—C15—C16 | −168.6 (3) |
C24—C4—C5—C6 | −61.6 (4) | C14—C15—C16—C17 | 52.6 (4) |
C3—C4—C5—C6 | −178.2 (3) | C15—C16—C17—C28 | 65.0 (4) |
C23—C4—C5—C10 | −73.5 (4) | C15—C16—C17—C22 | −169.0 (3) |
C24—C4—C5—C10 | 166.3 (3) | C15—C16—C17—C18 | −57.4 (4) |
C3—C4—C5—C10 | 49.7 (4) | C12—C13—C18—C19 | 51.4 (4) |
C10—C5—C6—C7 | −63.2 (4) | C14—C13—C18—C19 | 178.7 (3) |
C4—C5—C6—C7 | 161.3 (3) | C12—C13—C18—C17 | 174.4 (3) |
C5—C6—C7—C8 | 56.1 (4) | C14—C13—C18—C17 | −58.3 (4) |
C6—C7—C8—C26 | 75.0 (4) | C16—C17—C18—C13 | 61.6 (4) |
C6—C7—C8—C9 | −46.3 (4) | C28—C17—C18—C13 | −61.4 (4) |
C6—C7—C8—C14 | −165.7 (3) | C22—C17—C18—C13 | −176.7 (3) |
C7—C8—C9—C11 | −179.6 (3) | C16—C17—C18—C19 | −166.3 (3) |
C26—C8—C9—C11 | 62.3 (4) | C28—C17—C18—C19 | 70.7 (4) |
C14—C8—C9—C11 | −58.9 (4) | C22—C17—C18—C19 | −44.6 (3) |
C7—C8—C9—C10 | 47.0 (4) | C13—C18—C19—C20 | −79.6 (4) |
C26—C8—C9—C10 | −71.1 (4) | C17—C18—C19—C20 | 154.2 (3) |
C14—C8—C9—C10 | 167.7 (3) | C13—C18—C19—C21 | 158.0 (3) |
C2—C1—C10—C25 | −70.7 (4) | C17—C18—C19—C21 | 31.8 (4) |
C2—C1—C10—C5 | 53.0 (4) | C18—C19—C20—C29 | −22.7 (5) |
C2—C1—C10—C9 | 167.4 (3) | C21—C19—C20—C29 | 96.1 (5) |
C6—C5—C10—C1 | 175.3 (3) | C18—C19—C20—C30 | 163.0 (4) |
C4—C5—C10—C1 | −51.0 (4) | C21—C19—C20—C30 | −78.2 (4) |
C6—C5—C10—C25 | −65.2 (4) | C20—C19—C21—C22 | −134.8 (3) |
C4—C5—C10—C25 | 68.5 (4) | C18—C19—C21—C22 | −6.7 (4) |
C6—C5—C10—C9 | 59.8 (4) | C19—C21—C22—C17 | −21.2 (4) |
C4—C5—C10—C9 | −166.5 (3) | C16—C17—C22—C21 | 156.3 (3) |
C11—C9—C10—C1 | 60.2 (4) | C28—C17—C22—C21 | −76.5 (4) |
C8—C9—C10—C1 | −168.4 (3) | C18—C17—C22—C21 | 39.8 (4) |
C11—C9—C10—C25 | −58.7 (4) | C28A—O28A—C28—C17 | 109.7 (4) |
C8—C9—C10—C25 | 72.7 (4) | C16—C17—C28—O28A | 53.7 (4) |
C11—C9—C10—C5 | 175.1 (3) | C22—C17—C28—O28A | −75.7 (4) |
C8—C9—C10—C5 | −53.5 (4) | C18—C17—C28—O28A | 174.9 (3) |
C10—C9—C11—C12 | −169.2 (3) | C28—O28A—C28A—O28B | −6.5 (6) |
C8—C9—C11—C12 | 56.4 (4) | C28—O28A—C28A—N28A | 173.6 (3) |
C9—C11—C12—C13 | −54.2 (4) | C28B—N28A—C28A—O28B | 175.4 (4) |
C11—C12—C13—C18 | −177.3 (3) | C28D—N28A—C28A—O28B | −1.8 (6) |
C11—C12—C13—C14 | 55.2 (4) | C28B—N28A—C28A—O28A | −4.7 (5) |
C12—C13—C14—C27 | 63.5 (4) | C28D—N28A—C28A—O28A | 178.1 (4) |
C18—C13—C14—C27 | −66.0 (3) | C28C—N28B—C28B—N28A | −0.6 (5) |
C12—C13—C14—C15 | 179.4 (3) | C28D—N28A—C28B—N28B | −0.3 (5) |
C18—C13—C14—C15 | 49.8 (4) | C28A—N28A—C28B—N28B | −177.9 (4) |
C12—C13—C14—C8 | −58.4 (4) | C28B—N28B—C28C—C28D | 1.3 (7) |
C18—C13—C14—C8 | 172.1 (3) | N28B—C28C—C28D—N28A | −1.4 (6) |
C7—C8—C14—C27 | 59.6 (4) | C28B—N28A—C28D—C28C | 1.0 (5) |
C26—C8—C14—C27 | 176.9 (3) | C28A—N28A—C28D—C28C | 178.8 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
O3A—H3A···O28Bi | 0.82 | 2.13 | 2.920 (4) | 162 |
Symmetry code: (i) −x+3/2, −y+2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C34H52N2O3 |
Mr | 536.78 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 293 |
a, b, c (Å) | 8.2575 (2), 12.3909 (4), 29.0992 (8) |
V (Å3) | 2977.37 (15) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.08 |
Crystal size (mm) | 0.25 × 0.22 × 0.18 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2000) |
Tmin, Tmax | 0.898, 1.0 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 54547, 3117, 2106 |
Rint | 0.111 |
(sin θ/λ)max (Å−1) | 0.604 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.119, 1.02 |
No. of reflections | 3117 |
No. of parameters | 360 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.17, −0.20 |
Computer programs: APEX2 (Bruker, 2006), SAINT (Bruker, 2006), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O3A—H3A···O28Bi | 0.82 | 2.13 | 2.920 (4) | 162.2 |
Symmetry code: (i) −x+3/2, −y+2, z−1/2. |
Acknowledgements
This work was supported by the Fundação para a Ciência e Tecnologia. RCS thanks the FCT for a grant (SFRH/BD/23700/2005). We gratefully acknowledge the LCA-UC for granting computer time in the Milipeia cluster and Mr Carlos Pereira for help in the analysis of the output of the GAMESS code.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Cancer is the second most important disease leading to death in both the developing and developed countries nowadays. Numerous experimental and epidemiological studies have shown that several plant derived natural products may serve as effective anticancer drugs, among which are plant triterpenes (Kinghorn et al., 2004 and Setzer et al., 2003). Betulin and betulinic acid, two pentacyclic lupane triterpenes were reported to display several biological effects including anti-inflammatory, antiviral, antimalarial and in particular anticancer (Dzubak et al., 2006 and Tolstikova et al., 2006). The therapeutic characteristics of betulinic acid regarding specificity and mode of action make it a promising anticancer agent presently under evaluation in phase I studies (Petronelli et al., 2009).
As part of our current interest in the synthesis of new triterpenoid derivatives with cytotoxic activity, we have recently reported the synthesis and evaluation of novel carbamates and N-acylheterocyclic derivatives of betulin and betulinic acid for potential use as chemotherapeutic agents (Santos et al., 2009).
The general procedure for the synthesis of the novel lupane derivatives involved dissolution of the corresponding lupanes and CDI, in THF at reflux, under N2. The reaction of CDI with alcohols and phenols has been reported to afford either N-alkylimidazoles (Tang et al., 2004 and Totleben et al., 1997) or imidazole carboxylic esters (carbamates) (Herbez et al., 2005; Moreira et al., 2008; Ramos Silva et al., 2007; Tang et al., 2004 and Totleben et al., 1997) depending both on alcohol type and on the reaction conditions used. In this case the reaction afforded the carbamate derivative 3β-hydroxy-lup-20 (29)-en-28-yl-1H-imidazole-1-carboxylate in good yield. This compound had been found to induce a selective dose-dependent decrease in the viability of HepG2, HeLa and Jurkat cells after 72 h of treatment according to the determined IC50 values (4.2 µ M, 7.6 µ M and 16.3µ M, respectively), which were 2–8 times lower than that obtained with betulinic acid.
Mindful of the biological and synthetic importance of such molecules, we report in this communication the molecular structure of the 3β-hydroxy-lup-20 (29)-en-28-yl-1H-imidazole-1-carboxylate determined by single-crystal X-ray diffraction, and compare it with that of the free molecule as given by a quantum mechanical ab initio calculation. The structure of this compound with the corresponding atomic numbering scheme is shown in Fig. 1. This triterpenoid compound is a lupane-type with an imidazole carbonyloxy at C-28. The retention of configuration of C-28 was unequivocally demonstrated by this X-ray crystallographic study.
Bond lengths and valency angles have typical values for this type of compounds. All rings are fused trans as shown by the angle between the least-squares planes of the rings [rings A and B: 14.63 (18)°, B and C: 10.63 (18)°, C and D: 6.67 (18)°, D and E: 4.6 (2)°]. Rings A and C have conformations close to chair while rings B and D have conformations slightly distorted from chair towards half-chair as shown by the Cremer & Pople (1975) parameters [ring A: Q = 0.545 (4) Å, θ = 5.4 (4)° and ϕ = 36 (5)°; B: Q = 0.571 (4) Å, θ = 11.3 (4)° and ϕ = 1.0 (19)°; C: Q = 0.601 (4) Å, θ = 5.7 (4)° and ϕ = 338 (3)°; D: Q = 0.569 (4) Å, θ = 171.1 (4)° and ϕ = 90 (2)°]. Ring E has a twisted conformation along the C17–C18 bond [q2 = 0.443 (4) Å and ϕ2 = 9.0 (5)° and asymmetry parameters (Duax & Norton, 1975) ΔC2(C21) = ΔC2(C17,18) = 11.7 (4)°].
The molecules are hydrogen bonded involving the hydroxyl group at C3 and the carbonyl group of the carbamate moiety, forming infinite chains running along the c axis. In addition, two short distances between C16—H16A and C28—H28B and the O28A and O28B atoms, respectively may be due to weak intramolecular C—H···O interactions.
In order to gain some insight on how the crystal packing of (I) might affect the molecular geometry we have performed a quantum chemical calculation on the equilibrium geometry of the free molecule. These calculations were performed with the computer program GAMESS (Schmidt et al., 1993).
The ab initio calculations reproduce the observed experimental bond lengths and valency angles of the molecule well, with the exception of the bond C20—C30 for which the calculations gave a distance of 1.5103 Å instead of the observed value of 1.433 (6) Å. Also, the calculated conformations of the rings are very close to the experimental values, with the exception of ring E for which the calculations gave a conformation closer to envelope on C17, instead of the observed twisted conformation around C17–C18.