organic compounds
Neoirietriol
aGraduate School of Human and Environmental Studies, Kyoto University, Kyoto 606-8501, Japan, bGraduate School of Environmental Earth Science, Hokkaido University, Sapporo 060-0810, Japan, cThe Hokkaido University Museum, Sapporo 060-0810, Japan, and dDivision of Biological Sciences, Graduate School of Science, Hokkaido University, Sapporo 060-0810, Japan
*Correspondence e-mail: takahashi.hiroki.2x@kyoto-u.ac.jp
The title compound {systematic name: (1R,4S,4aS,7R,8aR)-4-bromo-7-[(1S,3R)-3-bromo-1,2,2-trimethylcyclopentyl]-1,4a-dimethyldecahydronaphthalene-1,7,8a-triol}, C20H34Br2O3, is a neoirieane-type bromoditerpenoid isolated from Laurencia yonaguniensis Masuda et Abe, species inedita. The absolute stereochemistry was established as (1S,4R,5R,7R,10S,11S,14R). The structure displays inter- and intramolecular O—H⋯O hydrogen bonding.
Related literature
For background to neoirieane-type structures, see: Suzuki et al. (2002); Takahashi et al. (2002). For the related see: Takahashi et al. (2007).
Experimental
Crystal data
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Data collection: KappaCCD Server Software (Nonius, 1998); cell DENZO-SMN (Otwinowski & Minor, 1997); data reduction: CrystalStructure (Rigaku, 2007); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
10.1107/S1600536810022336/fj2316sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810022336/fj2316Isup2.hkl
Isolation
The partially dried alga (40 g) was soaked in MeOH for 3 days. The MeOH solution was concentrated in vacuo and partitioned between Et2O and H2O. The Et2O solution was washed with water, dried over anhydrous Na2SO4, and evaporated to leave a dark-green oil (523 mg). The extract was fractionated by
on Si gel with a step gradient (hexane and ethyl acetate). The fraction (144 mg) eluted with hexane-EtOAc (3:1) was further subjected to preparative TLC with toluene-EtOAc (4:1) gave neoiretriol (40.8 mg, 7.8% based on the weight of MeOH extract).Neoirietriol: mp 132–133 oC (from CH2Cl2/hexane (2:1)); [a]D28 -61¯ (c 0.53; CHCl3); 1H NMR (400 MHz; C6D6), d 0.28 (1H, br s, OH: D2O exchangeable), 0.50 (3H, s, H3-18), 0.54 (1H, m, Ha-8), 0.60 (1H, ddd, J = 13.2, 10.3, 5.4 Hz, Ha-12), 0.75 (1H, d, J = 2.4 Hz, OH: D2O exchangeable), 0.93 (1H, ddd, J = 13.7, 4.9, 2.4 Hz, Ha-3), 0.97 (3H, s, H3-20), 1.20 (3H, s, H3-19), 1.38 (3H, s, H3-17), 1.21 (1H, ddd, J = 13.2, 13.2, 4.4 Hz, Hb-12), 1.56 (1H, m, Ha-9), 1.67 (1H, ddd, J = 13.2, 13.2, 3.9 Hz, Hb-8), 1.76 (1H, dd, J = 14.2, 2.4 Hz, Ha-6), 1.83 (1H, m, Hb-9), 1.86 (1H, m, Ha-13), 1.95 (1H, ddd, ddd, J = 13.7, 9.3, 4.9 Hz, Hb-13), 2.03 (1H, m, Ha-2), 2.13 (1H, ddd, J = 13.7, 13.7, 4.9 Hz, Hb-3), 2.07 (1H, dd, J = 14.2, 2.4 Hz, Hb-6), 2.48 (1H, dddd, J = 13.8, 13.2, 12.7, 4.4 Hz, Hb-2), 4.01 (1H, dd, J = 10.3, 8.8 Hz, H14), 4.88 (1H, dd, J = 12.7, 4.4 Hz, H-1), 5.20 (1H, s, OH: D2O exchangeable); 13C NMR (100 MHz, DEPT; C6D6) d 18.8 (C, C17), 23.4 (CH3, C18), 23.5 (CH3, C19), 23.7 (CH3, C20), 26.7 (CH3, C16), 30.3 (CH2 x 2, C8 and C12), 31.4 (CH2, C2), 32.2 (C, C9), 31.6 (CH2, C13), 31.7 (CH2, C6), 32.2 (CH2, C2), 38.3 (CH2, C3), 43.7 (C, C10), 48.5 (C, C15), 51.8 (C, C11), 65.2 (CH, C14), 65.7 (CH, C1), 75.3 (C, C4), 78.5 (C, C5), 81.7 (C, C7).
Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ(F2) is used only for calculating R-factor (gt). Non-H atoms were refined anisotropically. H atoms were treated as riding models.
Data collection: KappaCCD Server Software (Nonius, 1998); cell
DENZO-SMN (Otwinowski & Minor, 1997); data reduction: CrystalStructure (Rigaku, 2007); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: publCIF (Westrip, 2010).C20H34Br2O3 | F(000) = 496.00 |
Mr = 482.29 | Dx = 1.547 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71069 Å |
Hall symbol: P 2yb | Cell parameters from 1225 reflections |
a = 7.5026 (2) Å | θ = 1.8–28.1° |
b = 11.3985 (3) Å | µ = 3.94 mm−1 |
c = 12.1498 (5) Å | T = 296 K |
β = 94.9780 (3)° | Prism, colorless |
V = 1035.11 (6) Å3 | 0.30 × 0.20 × 0.20 mm |
Z = 2 |
Nonius KappaCCD diffractometer | 6129 independent reflections |
Radiation source: Mo Kα | 4774 reflections with F2 > 2σ(F2) |
Horizonally mounted graphite crystal monochromator | Rint = 0.110 |
Detector resolution: 9 pixels mm-1 | θmax = 30.5° |
ω scans | h = −10→10 |
Absorption correction: multi-scan (DENZO-SMN; Otwinowski & Minor, 1997) | k = −16→16 |
Tmin = 0.402, Tmax = 0.454 | l = −17→17 |
43586 measured reflections |
Refinement on F2 | w = 1/[σ2(Fo2) + (0.0612P)2 + 1.0272P] where P = (Fo2 + 2Fc2)/3 |
R[F2 > 2σ(F2)] = 0.062 | (Δ/σ)max < 0.001 |
wR(F2) = 0.151 | Δρmax = 0.66 e Å−3 |
S = 1.14 | Δρmin = −0.44 e Å−3 |
6129 reflections | Absolute structure: Flack (1983) |
227 parameters | Absolute structure parameter: −0.014 (12) |
All H-atom parameters refined |
C20H34Br2O3 | V = 1035.11 (6) Å3 |
Mr = 482.29 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 7.5026 (2) Å | µ = 3.94 mm−1 |
b = 11.3985 (3) Å | T = 296 K |
c = 12.1498 (5) Å | 0.30 × 0.20 × 0.20 mm |
β = 94.9780 (3)° |
Nonius KappaCCD diffractometer | 6129 independent reflections |
Absorption correction: multi-scan (DENZO-SMN; Otwinowski & Minor, 1997) | 4774 reflections with F2 > 2σ(F2) |
Tmin = 0.402, Tmax = 0.454 | Rint = 0.110 |
43586 measured reflections |
R[F2 > 2σ(F2)] = 0.062 | All H-atom parameters refined |
wR(F2) = 0.151 | Δρmax = 0.66 e Å−3 |
S = 1.14 | Δρmin = −0.44 e Å−3 |
6129 reflections | Absolute structure: Flack (1983) |
227 parameters | Absolute structure parameter: −0.014 (12) |
Refinement. Refinement was performed using all reflections. The weighted R-factor (wR) and goodness of fit (S) are based on F2. R-factor (gt) are based on F. The threshold expression of F2 > 2.0 σ (F2) is used only for calculating R-factor (gt). |
x | y | z | Uiso*/Ueq | ||
Br1 | 0.82169 (9) | 0.64485 (5) | 0.41310 (5) | 0.05902 (18) | |
Br2 | 0.45713 (9) | −0.27536 (5) | 0.13400 (6) | 0.05993 (18) | |
O1 | 1.1510 (4) | 0.3045 (3) | 0.2533 (3) | 0.0471 (8) | |
O2 | 0.7088 (4) | 0.3800 (3) | 0.1271 (2) | 0.0381 (7) | |
O3 | 0.4700 (3) | 0.2183 (3) | 0.1812 (2) | 0.0357 (6) | |
C1 | 0.8500 (7) | 0.5365 (4) | 0.2880 (4) | 0.0421 (10) | |
C2 | 1.0332 (8) | 0.5566 (5) | 0.2479 (5) | 0.0552 (14) | |
C3 | 1.0585 (8) | 0.4788 (5) | 0.1477 (5) | 0.0522 (13) | |
C4 | 1.0244 (6) | 0.3474 (4) | 0.1691 (4) | 0.0378 (9) | |
C5 | 0.8363 (5) | 0.3340 (3) | 0.2131 (3) | 0.0299 (8) | |
C6 | 0.7899 (5) | 0.2032 (3) | 0.2322 (3) | 0.0286 (8) | |
C7 | 0.6015 (5) | 0.1830 (3) | 0.2705 (3) | 0.0298 (8) | |
C8 | 0.5726 (6) | 0.2635 (4) | 0.3683 (4) | 0.0381 (10) | |
C9 | 0.6148 (6) | 0.3931 (4) | 0.3459 (4) | 0.0355 (9) | |
C10 | 0.8119 (6) | 0.4086 (3) | 0.3189 (3) | 0.0316 (8) | |
C11 | 0.5662 (6) | 0.0505 (3) | 0.2964 (3) | 0.0310 (8) | |
C12 | 0.3623 (7) | 0.0296 (4) | 0.3094 (5) | 0.0463 (11) | |
C13 | 0.3165 (9) | −0.0954 (5) | 0.2707 (7) | 0.0631 (17) | |
C14 | 0.4932 (7) | −0.1454 (4) | 0.2415 (4) | 0.0395 (10) | |
C15 | 0.6091 (6) | −0.0428 (4) | 0.2044 (4) | 0.0338 (9) | |
C16 | 1.0421 (8) | 0.2773 (6) | 0.0629 (4) | 0.0538 (14) | |
C17 | 0.9349 (6) | 0.3707 (4) | 0.4209 (4) | 0.0404 (10) | |
C18 | 0.6753 (8) | 0.0176 (4) | 0.4068 (4) | 0.0445 (11) | |
C19 | 0.8045 (7) | −0.0813 (4) | 0.2069 (5) | 0.0460 (11) | |
C20 | 0.5443 (7) | −0.0058 (4) | 0.0862 (4) | 0.0419 (11) | |
H1 | 0.7610 | 0.5588 | 0.2279 | 0.051* | |
H2 | 1.1248 | 0.5387 | 0.3068 | 0.066* | |
H3 | 1.0455 | 0.6384 | 0.2278 | 0.066* | |
H4 | 1.1797 | 0.4883 | 0.1271 | 0.063* | |
H5 | 0.9775 | 0.5048 | 0.0860 | 0.063* | |
H6 | 0.7994 | 0.1604 | 0.1639 | 0.034* | |
H7 | 0.8777 | 0.1708 | 0.2872 | 0.034* | |
H8 | 0.6481 | 0.2370 | 0.4324 | 0.046* | |
H9 | 0.4491 | 0.2571 | 0.3856 | 0.046* | |
H10 | 0.5939 | 0.4397 | 0.4103 | 0.043* | |
H11 | 0.5354 | 0.4213 | 0.2843 | 0.043* | |
H12 | 0.3382 | 0.0392 | 0.3860 | 0.056* | |
H13 | 0.2903 | 0.0857 | 0.2651 | 0.056* | |
H14 | 0.2689 | −0.1406 | 0.3291 | 0.076* | |
H15 | 0.2296 | −0.0948 | 0.2068 | 0.076* | |
H16 | 0.5541 | −0.1780 | 0.3094 | 0.047* | |
H17 | 1.1539 | 0.2958 | 0.0341 | 0.065* | |
H18 | 0.9453 | 0.2971 | 0.0092 | 0.065* | |
H19 | 1.0381 | 0.1949 | 0.0789 | 0.065* | |
H20 | 1.0525 | 0.4023 | 0.4159 | 0.048* | |
H21 | 0.9414 | 0.2866 | 0.4236 | 0.048* | |
H22 | 0.8874 | 0.3994 | 0.4866 | 0.048* | |
H23 | 0.7981 | 0.0396 | 0.4033 | 0.053* | |
H24 | 0.6679 | −0.0655 | 0.4186 | 0.053* | |
H25 | 0.6272 | 0.0583 | 0.4668 | 0.053* | |
H26 | 0.8741 | −0.0195 | 0.1783 | 0.055* | |
H27 | 0.8129 | −0.1503 | 0.1623 | 0.055* | |
H28 | 0.8493 | −0.0983 | 0.2816 | 0.055* | |
H29 | 0.4186 | 0.0112 | 0.0822 | 0.050* | |
H30 | 0.5654 | −0.0684 | 0.0360 | 0.050* | |
H31 | 0.6084 | 0.0629 | 0.0664 | 0.050* | |
H32 | 1.2265 | 0.2650 | 0.2253 | 0.057* | |
H33 | 0.7350 | 0.3567 | 0.0667 | 0.046* | |
H34 | 0.5132 | 0.2691 | 0.1438 | 0.043* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Br1 | 0.0831 (4) | 0.0325 (2) | 0.0605 (3) | −0.0029 (2) | 0.0009 (2) | −0.0086 (2) |
Br2 | 0.0686 (3) | 0.0386 (2) | 0.0705 (3) | −0.0076 (2) | −0.0061 (2) | −0.0147 (2) |
O1 | 0.0255 (16) | 0.063 (2) | 0.053 (2) | 0.0083 (15) | 0.0065 (14) | 0.0017 (18) |
O2 | 0.0400 (17) | 0.0439 (18) | 0.0292 (14) | 0.0058 (14) | −0.0033 (12) | 0.0043 (13) |
O3 | 0.0261 (13) | 0.0377 (15) | 0.0425 (15) | 0.0037 (13) | −0.0013 (11) | 0.0025 (15) |
C1 | 0.050 (2) | 0.032 (2) | 0.044 (2) | −0.000 (2) | 0.000 (2) | 0.0004 (19) |
C2 | 0.058 (3) | 0.036 (2) | 0.073 (3) | −0.013 (2) | 0.012 (2) | 0.001 (2) |
C3 | 0.050 (3) | 0.052 (3) | 0.056 (3) | −0.012 (2) | 0.017 (2) | 0.014 (2) |
C4 | 0.032 (2) | 0.041 (2) | 0.041 (2) | −0.0017 (18) | 0.0067 (18) | 0.0063 (19) |
C5 | 0.0233 (19) | 0.034 (2) | 0.032 (2) | 0.0022 (16) | −0.0020 (15) | 0.0026 (16) |
C6 | 0.0237 (18) | 0.029 (2) | 0.0336 (19) | 0.0022 (14) | 0.0040 (14) | −0.0009 (15) |
C7 | 0.027 (2) | 0.0292 (17) | 0.0326 (19) | 0.0031 (16) | 0.0006 (17) | −0.0006 (15) |
C8 | 0.035 (2) | 0.040 (2) | 0.042 (2) | −0.0044 (18) | 0.0175 (19) | −0.0039 (19) |
C9 | 0.036 (2) | 0.031 (2) | 0.041 (2) | 0.0022 (18) | 0.0081 (19) | −0.0057 (18) |
C10 | 0.031 (2) | 0.0289 (19) | 0.034 (2) | −0.0022 (16) | −0.0024 (16) | −0.0005 (16) |
C11 | 0.033 (2) | 0.031 (2) | 0.0299 (19) | −0.0013 (17) | 0.0071 (16) | −0.0020 (16) |
C12 | 0.041 (2) | 0.038 (2) | 0.062 (3) | −0.001 (2) | 0.017 (2) | −0.001 (2) |
C13 | 0.047 (3) | 0.048 (3) | 0.097 (5) | −0.008 (2) | 0.018 (3) | −0.014 (3) |
C14 | 0.044 (2) | 0.032 (2) | 0.042 (2) | −0.0083 (19) | 0.001 (2) | −0.0053 (18) |
C15 | 0.030 (2) | 0.030 (2) | 0.041 (2) | −0.0017 (17) | 0.0012 (18) | −0.0043 (17) |
C16 | 0.047 (3) | 0.072 (3) | 0.046 (2) | −0.004 (2) | 0.023 (2) | −0.005 (2) |
C17 | 0.042 (2) | 0.043 (2) | 0.035 (2) | −0.002 (2) | −0.0061 (18) | −0.0006 (19) |
C18 | 0.065 (3) | 0.037 (2) | 0.031 (2) | −0.008 (2) | −0.000 (2) | 0.0044 (19) |
C19 | 0.044 (2) | 0.036 (2) | 0.058 (3) | 0.006 (2) | 0.009 (2) | −0.003 (2) |
C20 | 0.052 (3) | 0.037 (2) | 0.036 (2) | 0.001 (2) | −0.000 (2) | −0.0084 (19) |
Br1—C1 | 1.984 (5) | C2—H3 | 0.970 |
Br2—C14 | 1.978 (4) | C3—H4 | 0.970 |
O1—C4 | 1.421 (6) | C3—H5 | 0.970 |
O2—C5 | 1.452 (5) | C6—H6 | 0.970 |
O3—C7 | 1.458 (5) | C6—H7 | 0.970 |
C1—C2 | 1.515 (9) | C8—H8 | 0.970 |
C1—C10 | 1.539 (6) | C8—H9 | 0.970 |
C2—C3 | 1.531 (9) | C9—H10 | 0.970 |
C3—C4 | 1.545 (8) | C9—H11 | 0.970 |
C4—C5 | 1.559 (6) | C12—H12 | 0.970 |
C4—C16 | 1.533 (8) | C12—H13 | 0.970 |
C5—C6 | 1.553 (5) | C13—H14 | 0.970 |
C5—C10 | 1.565 (6) | C13—H15 | 0.970 |
C6—C7 | 1.543 (6) | C14—H16 | 0.980 |
C7—C8 | 1.532 (6) | C16—H17 | 0.960 |
C7—C11 | 1.570 (6) | C16—H18 | 0.960 |
C8—C9 | 1.541 (6) | C16—H19 | 0.960 |
C9—C10 | 1.552 (6) | C17—H20 | 0.960 |
C10—C17 | 1.541 (6) | C17—H21 | 0.960 |
C11—C12 | 1.569 (7) | C17—H22 | 0.960 |
C11—C15 | 1.597 (6) | C18—H23 | 0.960 |
C11—C18 | 1.556 (6) | C18—H24 | 0.960 |
C12—C13 | 1.530 (8) | C18—H25 | 0.960 |
C13—C14 | 1.513 (8) | C19—H26 | 0.960 |
C14—C15 | 1.547 (6) | C19—H27 | 0.960 |
C15—C19 | 1.528 (7) | C19—H28 | 0.960 |
C15—C20 | 1.534 (6) | C20—H29 | 0.960 |
O1—H32 | 0.820 | C20—H30 | 0.960 |
C1—H1 | 0.980 | C20—H31 | 0.960 |
C2—H2 | 0.970 | ||
O1···O3i | 2.797 (4) | H15···H27iii | 3.189 |
O1···C8i | 3.378 (5) | H15···H28iii | 3.069 |
O1···C12i | 3.551 (6) | H15···H33iv | 3.401 |
O2···C20ii | 3.341 (5) | H16···Br1viii | 3.043 |
O3···O1iii | 2.797 (4) | H16···H1viii | 3.558 |
O3···C16iii | 3.468 (6) | H17···O3i | 2.977 |
C8···O1iii | 3.378 (5) | H17···C19xii | 3.285 |
C12···O1iii | 3.551 (6) | H17···C20xii | 3.599 |
C16···O3i | 3.468 (6) | H17···H26xii | 3.323 |
C20···O2iv | 3.341 (6) | H17···H27xii | 2.498 |
Br1···H9v | 3.551 | H17···H30xii | 2.805 |
Br1···H12v | 3.058 | H17···H33 | 3.276 |
Br1···H16vi | 3.043 | H17···H34i | 2.917 |
Br1···H21vii | 3.015 | H18)···Br2ii | 3.452 |
Br1···H24vi | 3.500 | H18)···H3xi | 3.407 |
Br1···H28vi | 3.350 | H18···H5xi | 3.591 |
Br2···H1viii | 3.101 | H18···H15ii | 3.087 |
Br2···H3ix | 3.523 | H18···H26xii | 3.454 |
Br2···H4ix | 3.401 | H18···H27xii | 2.941 |
Br2···H18iv | 3.452 | H18···H33 | 1.905 |
Br2···H31iv | 3.060 | H19···O3i | 3.379 |
Br2···H33iv | 3.111 | H19···H5xi | 2.946 |
Br2···H34iv | 3.439 | H19···H13i | 3.083 |
O1···H9)i | 2.694 | H19···H29i | 3.538 |
O1···H11i | 3.169 | H19···H33 | 2.922 |
O1···H13i | 2.703 | H20···C18vii | 3.126 |
O1···H34i | 3.153 | H20···H9i | 3.453 |
O2···H29ii | 3.032 | H20···H23vii | 2.847 |
O2···H30ii | 2.792 | H20···H24vii | 2.802 |
O2···H33 | 0.820 | H20···H25vii | 3.221 |
O2···H34 | 1.960 | H21···Br1xiii | 3.015 |
O3···H17iii | 2.977 | H22···C12v | 3.558 |
O3···H19iii | 3.379 | H22···C13v | 3.438 |
O3···H30ii | 3.581 | H22···H12v | 2.873 |
O3···H32iii | 2.020 | H22···H14v | 2.656 |
O3···H33 | 2.976 | H22···H23vii | 3.060 |
O3···H34 | 0.820 | H22···H24vii | 3.458 |
C1···H33 | 3.432 | H22···H28vii | 3.297 |
C3···H33 | 2.895 | H23···C17xiii | 3.398 |
C4···H33 | 2.410 | H23···H2xiii | 3.520 |
C5···H33 | 1.891 | H23···H20xiii | 2.847 |
C5···H34 | 2.604 | H23···H22xiii | 3.060 |
C6···H33 | 2.671 | H24···Br1viii | 3.500 |
C6···H34 | 2.376 | H24···C17xiii | 3.494 |
C7···H32iii | 2.970 | H24···H9x | 3.299 |
C7···H33 | 3.389 | H24···H10x | 2.982 |
C7···H34 | 1.896 | H24···H20xiii | 2.802 |
C8···H32iii | 2.996 | H24···H22xiii | 3.458 |
C8···H34 | 2.727 | H25···C9x | 3.569 |
C9···H25v | 3.569 | H25···H2xiii | 3.193 |
C9···H32iii | 3.468 | H25···H10x | 2.690 |
C9···H34 | 2.878 | H25···H20xiii | 3.221 |
C10···H33 | 3.125 | H26···C13i | 3.518 |
C10···H34 | 3.354 | H26···H5xi | 3.500 |
C11···H32iii | 3.582 | H26···H13i | 3.424 |
C11···H34 | 3.111 | H26···H15i | 2.794 |
C12···H10x | 3.544 | H26···H17xi | 3.323 |
C12···H22x | 3.558 | H26···H18xi | 3.454 |
C12···H32iii | 3.017 | H27···C16xi | 3.142 |
C13···H22x | 3.438 | H27···H1viii | 3.440 |
C13···H26iii | 3.518 | H27···H3viii | 3.039 |
C13···H28iii | 3.519 | H27···H15i | 3.189 |
C16···H5xi | 3.591 | H27···H17xi | 2.498 |
C16···H27xii | 3.142 | H27···H18xi | 2.941 |
C16···H33 | 2.480 | H28···Br1viii | 3.350 |
C16···H34i | 3.587 | H28···C13i | 3.519 |
C17···H14v | 3.520 | H28···H3viii | 3.431 |
C17···H23vii | 3.398 | H28···H14i | 3.188 |
C17···H24vii | 3.494 | H28···H15i | 3.069 |
C18···H10x | 3.253 | H28···H22xiii | 3.297 |
C18···H20xiii | 3.126 | H29···O2iv | 3.032 |
C19···H15i | 3.193 | H29···H5iv | 3.458 |
C19···H17xi | 3.285 | H29···H19iii | 3.538 |
C20···H4xi | 3.455 | H29···H33iv | 2.709 |
C20···H17xi | 3.599 | H29···H34 | 3.101 |
C20···H33iv | 3.101 | H30···O2iv | 2.792 |
C20···H34 | 3.224 | H30···O3iv | 3.581 |
H1···Br2vi | 3.101 | H30···H4xi | 2.943 |
H1···H16vi | 3.558 | H30···H17xi | 2.805 |
H1···H27vi | 3.440 | H30···H33iv | 2.622 |
H1···H33 | 3.019 | H30···H34iv | 2.886 |
H2···H11i | 3.391 | H31···Br2ii | 3.060 |
H2···H23vii | 3.520 | H31···H4xi | 3.070 |
H2···H25vii | 3.193 | H31···H33 | 3.482 |
H3···Br2xiv | 3.523 | H31···H34 | 2.653 |
H3···H14xiv | 3.212 | H32···O3i | 2.020 |
H3···H15xiv | 3.359 | H32···C7i | 2.970 |
H3···H18xii | 3.407 | H32···C8i | 2.996 |
H3···H27vi | 3.039 | H32···C9i | 3.468 |
H3···H28vi | 3.431 | H32···C11i | 3.582 |
H4···Br2xiv | 3.401 | H32···C12i | 3.017 |
H4···C20xii | 3.455 | H32···H9i | 2.454 |
H4···H11i | 3.235 | H32···H11i | 2.961 |
H4···H30xii | 2.943 | H32···H12i | 3.295 |
H4···H31xii | 3.070 | H32···H13i | 2.145 |
H4···H34i | 3.528 | H32···H34i | 2.445 |
H5···C16xii | 3.591 | H33···Br2ii | 3.111 |
H5···H18xii | 3.591 | H33···O2 | 0.820 |
H5···H19xii | 2.946 | H33···O3 | 2.976 |
H5···H26xii | 3.500 | H33···C1 | 3.432 |
H5···H29ii | 3.458 | H33···C3 | 2.895 |
H5···H33 | 2.478 | H33···C4 | 2.410 |
H6···H33 | 2.557 | H33···C5 | 1.891 |
H6···H34 | 2.473 | H33···C6 | 2.671 |
H7···H13i | 3.277 | H33···C7 | 3.389 |
H7···H33 | 3.510 | H33···C10 | 3.125 |
H7···H34 | 3.309 | H33···C16 | 2.480 |
H8···H14v | 3.227 | H33···C20ii | 3.101 |
H8···H34 | 3.583 | H33···H1 | 3.019 |
H9···Br1x | 3.551 | H33···H5 | 2.478 |
H9···O1iii | 2.694 | H33···H6 | 2.557 |
H9···H20iii | 3.453 | H33···H7 | 3.510 |
H9···H24v | 3.299 | H33···H11 | 3.235 |
H9···H32iii | 2.454 | H33···H15ii | 3.401 |
H9···H34 | 3.021 | H33···H17 | 3.276 |
H10···C12v | 3.544 | H33···H18 | 1.905 |
H10···C18v | 3.253 | H33···H19 | 2.922 |
H10···H12v | 2.729 | H33···H29ii | 2.709 |
H10···H14v | 3.370 | H33···H30ii | 2.622 |
H10···H24v | 2.982 | H33···H31 | 3.482 |
H10···H25v | 2.690 | H33···H34 | 2.217 |
H11···O1iii | 3.169 | H34···Br2ii | 3.439 |
H11···H2iii | 3.391 | H34···O1iii | 3.153 |
H11···H4iii | 3.235 | H34···O2 | 1.960 |
H11···H32iii | 2.961 | H34···O3 | 0.820 |
H11···H33 | 3.235 | H34···C5 | 2.604 |
H11···H34 | 2.430 | H34···C6 | 2.376 |
H12···Br1x | 3.058 | H34···C7 | 1.896 |
H12···H10x | 2.729 | H34···C8 | 2.727 |
H12···H22x | 2.873 | H34···C9 | 2.878 |
H12···H32iii | 3.295 | H34···C10 | 3.354 |
H13···O1iii | 2.703 | H34···C11 | 3.111 |
H13···H7iii | 3.277 | H34···C16iii | 3.587 |
H13···H19iii | 3.083 | H34···C20 | 3.224 |
H13···H26iii | 3.424 | H34···H4iii | 3.528 |
H13···H32iii | 2.145 | H34···H6 | 2.473 |
H13···H34 | 3.125 | H34···H7 | 3.309 |
H14···C17x | 3.520 | H34···H8 | 3.583 |
H14···H3ix | 3.212 | H34···H9 | 3.021 |
H14···H8x | 3.227 | H34···H11 | 2.430 |
H14···H10x | 3.370 | H34···H13 | 3.125 |
H14···H22x | 2.656 | H34···H17iii | 2.917 |
H14···H28iii | 3.188 | H34···H29 | 3.101 |
H15···C19iii | 3.193 | H34···H30ii | 2.886 |
H15···H3ix | 3.359 | H34···H31 | 2.653 |
H15···H18iv | 3.087 | H34···H32iii | 2.445 |
H15···H26iii | 2.794 | H34···H33 | 2.217 |
Br1—C1—C2 | 108.2 (3) | C4—C3—H4 | 108.9 |
Br1—C1—C10 | 111.7 (3) | C4—C3—H5 | 108.9 |
C2—C1—C10 | 114.5 (4) | H4—C3—H5 | 107.8 |
C1—C2—C3 | 110.3 (4) | C5—C6—H6 | 108.7 |
C2—C3—C4 | 113.2 (5) | C5—C6—H7 | 108.7 |
O1—C4—C3 | 110.2 (4) | C7—C6—H6 | 108.7 |
O1—C4—C5 | 106.7 (3) | C7—C6—H7 | 108.7 |
O1—C4—C16 | 109.0 (4) | H6—C6—H7 | 107.6 |
C3—C4—C5 | 108.7 (4) | C7—C8—H8 | 109.0 |
C3—C4—C16 | 109.7 (4) | C7—C8—H9 | 109.0 |
C5—C4—C16 | 112.6 (4) | C9—C8—H8 | 109.0 |
O2—C5—C4 | 106.1 (3) | C9—C8—H9 | 109.0 |
O2—C5—C6 | 108.2 (3) | H8—C8—H9 | 107.8 |
O2—C5—C10 | 106.2 (3) | C8—C9—H10 | 109.4 |
C4—C5—C6 | 111.5 (3) | C8—C9—H11 | 109.4 |
C4—C5—C10 | 113.7 (3) | C10—C9—H10 | 109.4 |
C6—C5—C10 | 110.8 (3) | C10—C9—H11 | 109.4 |
C5—C6—C7 | 114.3 (3) | H10—C9—H11 | 108.0 |
O3—C7—C6 | 108.2 (3) | C11—C12—H12 | 110.1 |
O3—C7—C8 | 106.3 (3) | C11—C12—H13 | 110.1 |
O3—C7—C11 | 107.4 (3) | C13—C12—H12 | 110.1 |
C6—C7—C8 | 109.9 (3) | C13—C12—H13 | 110.1 |
C6—C7—C11 | 112.3 (3) | H12—C12—H13 | 108.5 |
C8—C7—C11 | 112.5 (3) | C12—C13—H14 | 110.9 |
C7—C8—C9 | 113.0 (4) | C12—C13—H15 | 110.9 |
C8—C9—C10 | 111.1 (3) | C14—C13—H14 | 110.9 |
C1—C10—C5 | 106.1 (3) | C14—C13—H15 | 110.9 |
C1—C10—C9 | 111.1 (3) | H14—C13—H15 | 108.9 |
C1—C10—C17 | 110.5 (3) | Br2—C14—H16 | 107.4 |
C5—C10—C9 | 107.1 (3) | C13—C14—H16 | 107.4 |
C5—C10—C17 | 113.8 (3) | C15—C14—H16 | 107.4 |
C9—C10—C17 | 108.3 (3) | C4—C16—H17 | 109.5 |
C7—C11—C12 | 110.5 (3) | C4—C16—H18 | 109.5 |
C7—C11—C15 | 116.9 (3) | C4—C16—H19 | 109.5 |
C7—C11—C18 | 108.6 (3) | H17—C16—H18 | 109.5 |
C12—C11—C15 | 103.1 (3) | H17—C16—H19 | 109.5 |
C12—C11—C18 | 108.7 (4) | H18—C16—H19 | 109.5 |
C15—C11—C18 | 108.7 (3) | C10—C17—H20 | 109.5 |
C11—C12—C13 | 107.8 (4) | C10—C17—H21 | 109.5 |
C12—C13—C14 | 104.2 (4) | C10—C17—H22 | 109.5 |
Br2—C14—C13 | 111.4 (3) | H20—C17—H21 | 109.5 |
Br2—C14—C15 | 114.9 (3) | H20—C17—H22 | 109.5 |
C13—C14—C15 | 108.0 (4) | H21—C17—H22 | 109.5 |
C11—C15—C14 | 98.4 (3) | C11—C18—H23 | 109.5 |
C11—C15—C19 | 115.4 (3) | C11—C18—H24 | 109.5 |
C11—C15—C20 | 113.9 (3) | C11—C18—H25 | 109.5 |
C14—C15—C19 | 109.9 (4) | H23—C18—H24 | 109.5 |
C14—C15—C20 | 109.9 (3) | H23—C18—H25 | 109.5 |
C19—C15—C20 | 108.9 (4) | H24—C18—H25 | 109.5 |
C4—O1—H32 | 109.5 | C15—C19—H26 | 109.5 |
C5—O2—H33 | 109.5 | C15—C19—H27 | 109.5 |
C7—O3—H34 | 109.5 | C15—C19—H28 | 109.5 |
Br1—C1—H1 | 107.4 | H26—C19—H27 | 109.5 |
C2—C1—H1 | 107.4 | H26—C19—H28 | 109.5 |
C10—C1—H1 | 107.4 | H27—C19—H28 | 109.5 |
C1—C2—H2 | 109.6 | C15—C20—H29 | 109.5 |
C1—C2—H3 | 109.6 | C15—C20—H30 | 109.5 |
C3—C2—H2 | 109.6 | C15—C20—H31 | 109.5 |
C3—C2—H3 | 109.6 | H29—C20—H30 | 109.5 |
H2—C2—H3 | 108.1 | H29—C20—H31 | 109.5 |
C2—C3—H4 | 108.9 | H30—C20—H31 | 109.5 |
C2—C3—H5 | 108.9 |
Symmetry codes: (i) x+1, y, z; (ii) −x+1, y+1/2, −z; (iii) x−1, y, z; (iv) −x+1, y−1/2, −z; (v) −x+1, y+1/2, −z+1; (vi) x, y+1, z; (vii) −x+2, y+1/2, −z+1; (viii) x, y−1, z; (ix) x−1, y−1, z; (x) −x+1, y−1/2, −z+1; (xi) −x+2, y−1/2, −z; (xii) −x+2, y+1/2, −z; (xiii) −x+2, y−1/2, −z+1; (xiv) x+1, y+1, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H32···O3i | 0.82 | 2.02 | 2.797 (4) | 158 |
O3—H34···O2 | 0.82 | 1.96 | 2.691 (4) | 148 |
Symmetry code: (i) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C20H34Br2O3 |
Mr | 482.29 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 296 |
a, b, c (Å) | 7.5026 (2), 11.3985 (3), 12.1498 (5) |
β (°) | 94.9780 (3) |
V (Å3) | 1035.11 (6) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 3.94 |
Crystal size (mm) | 0.30 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Nonius KappaCCD diffractometer |
Absorption correction | Multi-scan (DENZO-SMN; Otwinowski & Minor, 1997) |
Tmin, Tmax | 0.402, 0.454 |
No. of measured, independent and observed [F2 > 2σ(F2)] reflections | 43586, 6129, 4774 |
Rint | 0.110 |
(sin θ/λ)max (Å−1) | 0.714 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.062, 0.151, 1.14 |
No. of reflections | 6129 |
No. of parameters | 227 |
No. of restraints | ? |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.66, −0.44 |
Absolute structure | Flack (1983) |
Absolute structure parameter | −0.014 (12) |
Computer programs: KappaCCD Server Software (Nonius, 1998), DENZO-SMN (Otwinowski & Minor, 1997), CrystalStructure (Rigaku, 2007), SIR97 (Altomare et al., 1999), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), publCIF (Westrip, 2010).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H32···O3i | 0.820 | 2.020 | 2.797 (4) | 158 |
O3—H34···O2 | 0.820 | 1.960 | 2.691 (4) | 148 |
Symmetry code: (i) x+1, y, z. |
References
Altomare, A., Burla, M. C., Camalli, M., Cascarano, G. L., Giacovazzo, C., Guagliardi, A., Moliterni, A. G. G., Polidori, G. & Spagna, R. (1999). J. Appl. Cryst. 32, 115–119. Web of Science CrossRef CAS IUCr Journals Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Nonius (1998). KappaCCD Server Software. Windows 3.11 Version. Nonius BV, Delft, The Netherlands. Google Scholar
Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology, Vol. 276, Macromolecular Crystallography, Part A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307–326. New York: Academic Press. Google Scholar
Rigaku (2007). CrystalStructure. Rigaku Americas, The Woodlands, Texas, USA, and Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Suzuki, M., Nakano, S., Takahashi, Y., Abe, T., Masuda, M., Takahashi, H. & Kobayashi, K. (2002). J. Nat. Prod. 65, 801–804. Web of Science CSD CrossRef PubMed CAS Google Scholar
Takahashi, Y., Daitoh, M., Suzuki, M., Abe, T. & Masuda, M. (2002). J. Nat. Prod. 65, 395–398. Web of Science CrossRef PubMed CAS Google Scholar
Takahashi, H., Takahashi, Y., Suzuki, M., Abe, T. & Masuda, M. (2007). Anal. Sci. 23, x103–x1044. CAS Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43. Submitted. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
As part of our continuing chemotaxonomical studies on Japanese species of the red algal genus Laurencia (Rhodomelaceae, Ceramiales), we reported previously the structure of neoirietetraol (Takahashi et al., 2002, Takahashi et al., 2007), including the relative configuration and X-ray crystal structure, isolated from Laurencia yonaguniensis Masuda et Abe, species inedita (Masuda, M.; unpublished results), which was collected at Yonaguni Island, Okinawa, Japan. Further investigation of the related metabolites from this alga has led to the isolation of a new bromoditerpene, named neoirietriol, having a molecular formula of C20H34Br2O3, which was established by FD-LRMS (m/z 466, 464, 462 (1:2:1); M–H2O) and FAB-HRMS (m/z 479.0813; calcd for C20H3379Br2O3, 479.0796; M–H).
During the course of refinement of the structure, the Flack parameter converged to a value of -0.014 (12) within the derived limits as required for the correct enantiomorph of the structure. The absolute configuration of the title compound was established as (1S, 4R, 5R, 7S, 10R, 11S, 14R) (Fig. 1).
In the crystal, an intramolecular hydrogen bond was observed between O3···O2[distance 2.691 (4) Å] and an intermolecular hydrogen bond between O1···O3 (x + 1, y, z; distance 2.797 (4) Å) forming an infinite chain structure along the a axis (Fig. 2).