organic compounds
Phenyl 2,3,4-tri-O-benzyl-1-thio-α-D-mannopyranoside monohydrate
aDepartment of Chemistry, University of Namur, 61 Rue de Bruxelles, B-5000 Namur, Belgium
*Correspondence e-mail: johan.wouters@fundp.ac.be
In the title compound, C33H34O5S·H2O, the mannopyranoside ring adopts a chair conformation with the 2-α-thiophenyl group occupying an axial position. One of the pendant benzyl groups is disordered over two sets of sites in a 0.5:0.5 ratio. In the crystal, the water molecule makes two O—H⋯O hydrogen bonds to an adjacent sugar molecule with the O atoms of the primary alcohol and ether groups acting as acceptors. At the same time, the OH group of the sugar makes a hydrogen bond to a water molecule.
Related literature
For background to the synthesis and properties of mannopyranosides, see: Boons (1991); Szurmai et al. (1994); Caravano et al. (2003); Grizot et al. (2006); Dohi et al. (2008). For ring conformation analysis, see: Cremer & Pople (1975).
Experimental
Crystal data
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Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell CrysAlis RED (Oxford Diffraction, 2009); data reduction: CrysAlis RED; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON.
Supporting information
10.1107/S1600536810019604/hb5424sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810019604/hb5424Isup2.hkl
The title compound was obtained by a six-step synthetic route that will be described in details elsewhere. Overall yield is 70%. Colourless prisms of (I) were obtained by evaporation of a solution in ethyl acetate.
Disorder of the benzyl C(21) > C(27) moiety substituting oxygen O(4) was included in the
(0.5 occupacy for both parts that were restrained to have similar bond lengths and angles). H atoms on water oxygen atom OW and on alcohol oxygen atom O(6) were located by Fourier difference maps and allowed to ride on their parent O atoms.All other H atoms were placed at idealized positions and allowed to ride on their parent atoms, with C—H = 0.97 Å and Uiso(H) = 1.2Ueq(C) for methylene groups, C—H = 0.93 Å and Uiso(H) = 1.2Ueq(C) for aromatic carbons, and C—H = 0.96 Å and Uiso(H) = 1.5Ueq(C) for the methyl group.
Data collection: CrysAlis CCD (Oxford Diffraction, 2009); cell
CrysAlis RED (Oxford Diffraction, 2009); data reduction: CrysAlis RED (Oxford Diffraction, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009).Fig. 1. The molecular structure of (I): C-bound H atoms are omitted and disorder is not presented for clarity. Displacement ellipsoids for non-H atoms are drawn at the 50% probability level. |
C33H34O5S·H2O | F(000) = 596.0 |
Mr = 560.69 | Dx = 1.255 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 7534 reflections |
a = 12.628 (1) Å | θ = 3.0–28.2° |
b = 8.084 (1) Å | µ = 0.15 mm−1 |
c = 14.832 (2) Å | T = 150 K |
β = 101.380 (5)° | Prism, colourless |
V = 1484.4 (2) Å3 | 0.35 × 0.30 × 0.17 mm |
Z = 2 |
Oxford Diffraction Gemini Ruby CCD diffractometer | 5205 independent reflections |
Radiation source: Enhanced fine-focus sealed tube | 4333 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.022 |
ω scans | θmax = 25.0°, θmin = 3.0° |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | h = −15→14 |
Tmin = 0.948, Tmax = 0.974 | k = −9→9 |
12650 measured reflections | l = −17→17 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.030 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.062 | w = 1/[σ2(Fo2) + (0.0359P)2] where P = (Fo2 + 2Fc2)/3 |
S = 0.97 | (Δ/σ)max = 0.001 |
5205 reflections | Δρmax = 0.13 e Å−3 |
400 parameters | Δρmin = −0.17 e Å−3 |
17 restraints | Absolute structure: Flack (1983), 2381 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.01 (5) |
C33H34O5S·H2O | V = 1484.4 (2) Å3 |
Mr = 560.69 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 12.628 (1) Å | µ = 0.15 mm−1 |
b = 8.084 (1) Å | T = 150 K |
c = 14.832 (2) Å | 0.35 × 0.30 × 0.17 mm |
β = 101.380 (5)° |
Oxford Diffraction Gemini Ruby CCD diffractometer | 5205 independent reflections |
Absorption correction: multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) | 4333 reflections with I > 2σ(I) |
Tmin = 0.948, Tmax = 0.974 | Rint = 0.022 |
12650 measured reflections |
R[F2 > 2σ(F2)] = 0.030 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.062 | Δρmax = 0.13 e Å−3 |
S = 0.97 | Δρmin = −0.17 e Å−3 |
5205 reflections | Absolute structure: Flack (1983), 2381 Friedel pairs |
400 parameters | Absolute structure parameter: 0.01 (5) |
17 restraints |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
C1 | 0.28677 (14) | 0.7097 (2) | 0.89516 (11) | 0.0300 (4) | |
H1 | 0.3281 | 0.7834 | 0.9416 | 0.036* | |
C2 | 0.32672 (13) | 0.7370 (2) | 0.80557 (11) | 0.0334 (4) | |
H2 | 0.3072 | 0.8487 | 0.7825 | 0.040* | |
C3 | 0.27664 (14) | 0.6105 (2) | 0.73342 (11) | 0.0337 (4) | |
H3 | 0.1995 | 0.6349 | 0.7142 | 0.040* | |
C4 | 0.28925 (14) | 0.4357 (2) | 0.77082 (10) | 0.0297 (4) | |
H4 | 0.3641 | 0.3989 | 0.7759 | 0.036* | |
C5 | 0.25565 (14) | 0.4210 (2) | 0.86404 (10) | 0.0276 (4) | |
H5 | 0.1771 | 0.4349 | 0.8547 | 0.033* | |
C6 | 0.28498 (13) | 0.2565 (2) | 0.90995 (11) | 0.0323 (4) | |
H6A | 0.2635 | 0.2547 | 0.9692 | 0.039* | |
H6B | 0.2466 | 0.1688 | 0.8725 | 0.039* | |
C8 | 0.11808 (13) | 0.7620 (2) | 0.98996 (11) | 0.0308 (4) | |
C9 | 0.02534 (15) | 0.6816 (2) | 1.00193 (13) | 0.0370 (5) | |
H9 | −0.0181 | 0.6284 | 0.9525 | 0.044* | |
C10 | −0.00307 (16) | 0.6802 (2) | 1.08781 (14) | 0.0448 (5) | |
H10 | −0.0665 | 0.6283 | 1.0954 | 0.054* | |
C11 | 0.06208 (17) | 0.7552 (3) | 1.16149 (13) | 0.0489 (5) | |
H11 | 0.0431 | 0.7537 | 1.2190 | 0.059* | |
C12 | 0.15545 (18) | 0.8325 (3) | 1.14995 (13) | 0.0453 (5) | |
H12 | 0.2004 | 0.8810 | 1.2002 | 0.054* | |
C13 | 0.18316 (15) | 0.8388 (2) | 1.06442 (13) | 0.0378 (5) | |
H13 | 0.2453 | 0.8945 | 1.0568 | 0.045* | |
C14 | 0.50097 (18) | 0.8655 (2) | 0.81855 (16) | 0.0507 (6) | |
H14A | 0.5083 | 0.9246 | 0.8764 | 0.061* | |
H14B | 0.4635 | 0.9367 | 0.7699 | 0.061* | |
C15 | 0.61013 (15) | 0.8228 (2) | 0.80096 (11) | 0.0322 (4) | |
C16 | 0.62073 (15) | 0.7141 (2) | 0.73104 (11) | 0.0367 (4) | |
H16 | 0.5595 | 0.6650 | 0.6961 | 0.044* | |
C17 | 0.72045 (17) | 0.6782 (3) | 0.71287 (13) | 0.0478 (5) | |
H17 | 0.7264 | 0.6048 | 0.6659 | 0.057* | |
C18 | 0.81128 (17) | 0.7497 (3) | 0.76340 (17) | 0.0603 (6) | |
H18 | 0.8787 | 0.7253 | 0.7505 | 0.072* | |
C19 | 0.80278 (18) | 0.8570 (3) | 0.83291 (16) | 0.0578 (7) | |
H19 | 0.8647 | 0.9052 | 0.8673 | 0.069* | |
C20 | 0.70225 (17) | 0.8946 (2) | 0.85263 (12) | 0.0434 (5) | |
H20 | 0.6968 | 0.9673 | 0.9001 | 0.052* | |
O3 | 0.32582 (10) | 0.61829 (18) | 0.65476 (8) | 0.0464 (4) | |
C21 | 0.2578 (3) | 0.6608 (6) | 0.5714 (2) | 0.0441 (11) | 0.50 |
H21A | 0.2135 | 0.7550 | 0.5805 | 0.053* | 0.50 |
H21B | 0.2102 | 0.5689 | 0.5495 | 0.053* | 0.50 |
C22 | 0.3247 (5) | 0.7026 (7) | 0.5018 (4) | 0.0280 (18) | 0.50 |
C23 | 0.4047 (6) | 0.8186 (9) | 0.5201 (3) | 0.043 (2) | 0.50 |
H23 | 0.4207 | 0.8676 | 0.5779 | 0.051* | 0.50 |
C24 | 0.4617 (5) | 0.8638 (7) | 0.4547 (5) | 0.0407 (15) | 0.50 |
H24 | 0.5178 | 0.9396 | 0.4692 | 0.049* | 0.50 |
C25 | 0.4364 (5) | 0.7974 (10) | 0.3673 (5) | 0.0456 (16) | 0.50 |
H25 | 0.4748 | 0.8301 | 0.3229 | 0.055* | 0.50 |
C26 | 0.3545 (7) | 0.6830 (9) | 0.3456 (3) | 0.0481 (19) | 0.50 |
H26 | 0.3372 | 0.6388 | 0.2866 | 0.058* | 0.50 |
C27 | 0.2978 (6) | 0.6338 (10) | 0.4127 (4) | 0.044 (2) | 0.50 |
H27 | 0.2427 | 0.5562 | 0.3988 | 0.053* | 0.50 |
C21' | 0.2980 (4) | 0.7526 (6) | 0.5997 (2) | 0.0413 (7) | 0.50 |
H21C | 0.3253 | 0.8515 | 0.6334 | 0.050* | 0.50 |
H21D | 0.2199 | 0.7608 | 0.5844 | 0.050* | 0.50 |
C22' | 0.3411 (10) | 0.7456 (13) | 0.5118 (7) | 0.0413 (7) | 0.50 |
C23' | 0.4273 (9) | 0.8369 (12) | 0.4994 (6) | 0.0413 (7) | 0.50 |
H23' | 0.4617 | 0.9043 | 0.5471 | 0.050* | 0.50 |
C24' | 0.4653 (6) | 0.8333 (8) | 0.4192 (7) | 0.0413 (7) | 0.50 |
H24' | 0.5225 | 0.9015 | 0.4122 | 0.050* | 0.50 |
C25' | 0.4206 (7) | 0.7315 (9) | 0.3503 (6) | 0.0413 (7) | 0.50 |
H25' | 0.4465 | 0.7287 | 0.2958 | 0.050* | 0.50 |
C26' | 0.3361 (8) | 0.6316 (8) | 0.3617 (6) | 0.0413 (7) | 0.50 |
H26' | 0.3052 | 0.5596 | 0.3149 | 0.050* | 0.50 |
C27' | 0.2970 (8) | 0.6377 (14) | 0.4420 (8) | 0.0413 (7) | 0.50 |
H27' | 0.2405 | 0.5687 | 0.4494 | 0.050* | 0.50 |
C28 | 0.26726 (15) | 0.2153 (3) | 0.66005 (13) | 0.0451 (5) | |
H28A | 0.3146 | 0.1422 | 0.7016 | 0.054* | |
H28B | 0.3101 | 0.2731 | 0.6224 | 0.054* | |
C29 | 0.17992 (15) | 0.1171 (2) | 0.60016 (12) | 0.0376 (5) | |
C30 | 0.17758 (17) | 0.1035 (3) | 0.50676 (13) | 0.0445 (5) | |
H30 | 0.2310 | 0.1538 | 0.4812 | 0.053* | |
C31 | 0.09579 (19) | 0.0151 (3) | 0.45124 (14) | 0.0540 (6) | |
H31 | 0.0945 | 0.0064 | 0.3885 | 0.065* | |
C32 | 0.01714 (19) | −0.0592 (3) | 0.48815 (15) | 0.0570 (6) | |
H32 | −0.0373 | −0.1189 | 0.4506 | 0.068* | |
C33 | 0.01817 (17) | −0.0461 (3) | 0.58167 (15) | 0.0516 (6) | |
H33 | −0.0359 | −0.0957 | 0.6067 | 0.062* | |
C34 | 0.09947 (16) | 0.0405 (3) | 0.63681 (13) | 0.0430 (5) | |
H34 | 0.1007 | 0.0480 | 0.6996 | 0.052* | |
O1 | 0.30602 (9) | 0.54559 (13) | 0.92705 (7) | 0.0281 (3) | |
O2 | 0.44079 (9) | 0.71853 (15) | 0.82204 (8) | 0.0383 (3) | |
O4 | 0.21835 (9) | 0.32927 (16) | 0.71031 (8) | 0.0385 (3) | |
O6 | 0.39918 (10) | 0.22905 (16) | 0.92224 (9) | 0.0376 (3) | |
OW | 0.55620 (12) | 0.4829 (2) | 0.94836 (10) | 0.0379 (3) | |
S1 | 0.14464 (4) | 0.77358 (5) | 0.87681 (3) | 0.03636 (13) | |
HW1 | 0.528 (2) | 0.551 (4) | 0.9035 (18) | 0.084 (9)* | |
HW2 | 0.5117 (18) | 0.417 (3) | 0.9508 (13) | 0.047 (7)* | |
H6 | 0.4137 (16) | 0.142 (3) | 0.9571 (13) | 0.050 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0308 (10) | 0.0249 (9) | 0.0353 (10) | 0.0021 (8) | 0.0090 (8) | 0.0008 (7) |
C2 | 0.0287 (10) | 0.0296 (10) | 0.0436 (10) | 0.0051 (8) | 0.0111 (8) | 0.0099 (8) |
C3 | 0.0279 (10) | 0.0449 (11) | 0.0295 (9) | 0.0067 (9) | 0.0089 (8) | 0.0063 (8) |
C4 | 0.0231 (10) | 0.0371 (11) | 0.0284 (9) | 0.0003 (8) | 0.0037 (7) | −0.0026 (8) |
C5 | 0.0255 (10) | 0.0274 (10) | 0.0303 (9) | −0.0021 (8) | 0.0061 (7) | −0.0032 (8) |
C6 | 0.0313 (10) | 0.0333 (10) | 0.0333 (8) | −0.0040 (9) | 0.0088 (7) | −0.0021 (8) |
C8 | 0.0266 (10) | 0.0275 (9) | 0.0394 (9) | 0.0041 (8) | 0.0093 (7) | −0.0005 (9) |
C9 | 0.0277 (11) | 0.0346 (11) | 0.0477 (11) | 0.0026 (8) | 0.0048 (8) | 0.0003 (8) |
C10 | 0.0356 (11) | 0.0380 (12) | 0.0662 (14) | 0.0049 (9) | 0.0232 (10) | 0.0098 (10) |
C11 | 0.0597 (14) | 0.0457 (12) | 0.0468 (11) | 0.0112 (12) | 0.0238 (10) | 0.0057 (11) |
C12 | 0.0497 (13) | 0.0427 (12) | 0.0427 (11) | 0.0021 (10) | 0.0073 (9) | −0.0073 (9) |
C13 | 0.0318 (11) | 0.0327 (10) | 0.0501 (12) | 0.0001 (8) | 0.0105 (9) | −0.0028 (9) |
C14 | 0.0534 (14) | 0.0313 (12) | 0.0750 (14) | −0.0061 (10) | 0.0314 (11) | −0.0078 (10) |
C15 | 0.0386 (11) | 0.0282 (10) | 0.0313 (9) | −0.0064 (8) | 0.0103 (8) | 0.0023 (8) |
C16 | 0.0331 (11) | 0.0442 (11) | 0.0312 (9) | −0.0001 (9) | 0.0024 (8) | 0.0017 (8) |
C17 | 0.0458 (13) | 0.0565 (14) | 0.0441 (11) | 0.0070 (11) | 0.0165 (10) | 0.0045 (10) |
C18 | 0.0344 (13) | 0.0552 (15) | 0.0942 (17) | 0.0017 (12) | 0.0198 (12) | 0.0163 (14) |
C19 | 0.0390 (14) | 0.0482 (14) | 0.0751 (16) | −0.0134 (11) | −0.0160 (12) | 0.0203 (12) |
C20 | 0.0600 (15) | 0.0312 (10) | 0.0345 (10) | −0.0123 (10) | −0.0011 (10) | 0.0050 (8) |
O3 | 0.0426 (8) | 0.0664 (9) | 0.0334 (7) | 0.0167 (7) | 0.0157 (6) | 0.0184 (7) |
C21 | 0.031 (2) | 0.065 (3) | 0.032 (2) | −0.020 (2) | −0.0058 (17) | 0.002 (2) |
C22 | 0.036 (3) | 0.022 (4) | 0.025 (3) | 0.011 (3) | 0.007 (3) | 0.010 (3) |
C23 | 0.049 (5) | 0.065 (4) | 0.011 (2) | 0.006 (4) | 0.001 (2) | −0.004 (2) |
C24 | 0.033 (3) | 0.046 (3) | 0.041 (4) | −0.012 (2) | 0.000 (3) | −0.004 (3) |
C25 | 0.052 (4) | 0.052 (4) | 0.041 (4) | 0.009 (3) | 0.030 (3) | 0.010 (3) |
C26 | 0.080 (5) | 0.047 (4) | 0.017 (2) | 0.012 (4) | 0.008 (3) | −0.002 (2) |
C27 | 0.038 (3) | 0.036 (3) | 0.052 (6) | −0.011 (2) | −0.007 (4) | −0.002 (4) |
C21' | 0.0536 (15) | 0.0354 (13) | 0.0370 (14) | 0.0045 (11) | 0.0144 (11) | 0.0001 (11) |
C22' | 0.0536 (15) | 0.0354 (13) | 0.0370 (14) | 0.0045 (11) | 0.0144 (11) | 0.0001 (11) |
C23' | 0.0536 (15) | 0.0354 (13) | 0.0370 (14) | 0.0045 (11) | 0.0144 (11) | 0.0001 (11) |
C24' | 0.0536 (15) | 0.0354 (13) | 0.0370 (14) | 0.0045 (11) | 0.0144 (11) | 0.0001 (11) |
C25' | 0.0536 (15) | 0.0354 (13) | 0.0370 (14) | 0.0045 (11) | 0.0144 (11) | 0.0001 (11) |
C26' | 0.0536 (15) | 0.0354 (13) | 0.0370 (14) | 0.0045 (11) | 0.0144 (11) | 0.0001 (11) |
C27' | 0.0536 (15) | 0.0354 (13) | 0.0370 (14) | 0.0045 (11) | 0.0144 (11) | 0.0001 (11) |
C28 | 0.0364 (11) | 0.0497 (13) | 0.0494 (11) | 0.0013 (10) | 0.0092 (9) | −0.0137 (10) |
C29 | 0.0362 (11) | 0.0329 (10) | 0.0443 (12) | 0.0027 (9) | 0.0097 (9) | −0.0077 (9) |
C30 | 0.0488 (13) | 0.0425 (12) | 0.0447 (12) | −0.0036 (10) | 0.0152 (10) | −0.0046 (9) |
C31 | 0.0657 (15) | 0.0514 (14) | 0.0423 (12) | −0.0035 (12) | 0.0040 (11) | −0.0069 (10) |
C32 | 0.0486 (15) | 0.0532 (15) | 0.0629 (14) | −0.0103 (11) | −0.0046 (12) | −0.0147 (11) |
C33 | 0.0439 (14) | 0.0417 (13) | 0.0709 (15) | −0.0084 (10) | 0.0157 (11) | −0.0053 (11) |
C34 | 0.0427 (12) | 0.0416 (11) | 0.0464 (11) | 0.0025 (10) | 0.0124 (9) | −0.0043 (9) |
O1 | 0.0309 (7) | 0.0244 (6) | 0.0286 (6) | −0.0002 (5) | 0.0054 (5) | 0.0000 (5) |
O2 | 0.0307 (7) | 0.0340 (7) | 0.0521 (7) | −0.0014 (6) | 0.0127 (6) | 0.0108 (6) |
O4 | 0.0283 (7) | 0.0484 (8) | 0.0378 (7) | 0.0024 (6) | 0.0042 (5) | −0.0151 (6) |
O6 | 0.0350 (8) | 0.0285 (8) | 0.0494 (7) | 0.0019 (6) | 0.0082 (6) | 0.0079 (6) |
OW | 0.0299 (8) | 0.0340 (8) | 0.0469 (8) | −0.0020 (7) | 0.0005 (6) | 0.0019 (6) |
S1 | 0.0316 (3) | 0.0396 (3) | 0.0383 (2) | 0.0082 (2) | 0.00785 (19) | 0.0010 (2) |
C1—O1 | 1.414 (2) | O3—C21 | 1.403 (3) |
C1—C2 | 1.528 (2) | C21—C22 | 1.496 (6) |
C1—S1 | 1.8355 (17) | C21—H21A | 0.9700 |
C1—H1 | 0.9800 | C21—H21B | 0.9700 |
C2—O2 | 1.421 (2) | C22—C23 | 1.366 (8) |
C2—C3 | 1.524 (2) | C22—C27 | 1.412 (7) |
C2—H2 | 0.9800 | C23—C24 | 1.366 (7) |
C3—O3 | 1.427 (2) | C23—H23 | 0.9300 |
C3—C4 | 1.515 (3) | C24—C25 | 1.382 (7) |
C3—H3 | 0.9800 | C24—H24 | 0.9300 |
C4—O4 | 1.425 (2) | C25—C26 | 1.377 (8) |
C4—C5 | 1.529 (2) | C25—H25 | 0.9300 |
C4—H4 | 0.9800 | C26—C27 | 1.393 (8) |
C5—O1 | 1.4347 (18) | C26—H26 | 0.9300 |
C5—C6 | 1.506 (2) | C27—H27 | 0.9300 |
C5—H5 | 0.9800 | C21'—C22' | 1.510 (8) |
C6—O6 | 1.435 (2) | C21'—H21C | 0.9700 |
C6—H6A | 0.9700 | C21'—H21D | 0.9700 |
C6—H6B | 0.9700 | C22'—C23' | 1.356 (10) |
C8—C9 | 1.381 (2) | C22'—C27' | 1.384 (10) |
C8—C13 | 1.386 (2) | C23'—C24' | 1.370 (9) |
C8—S1 | 1.7777 (17) | C23'—H23' | 0.9300 |
C9—C10 | 1.390 (3) | C24'—C25' | 1.346 (9) |
C9—H9 | 0.9300 | C24'—H24' | 0.9300 |
C10—C11 | 1.372 (3) | C25'—C26' | 1.375 (9) |
C10—H10 | 0.9300 | C25'—H25' | 0.9300 |
C11—C12 | 1.375 (3) | C26'—C27' | 1.377 (9) |
C11—H11 | 0.9300 | C26'—H26' | 0.9300 |
C12—C13 | 1.382 (3) | C27'—H27' | 0.9300 |
C12—H12 | 0.9300 | C28—O4 | 1.403 (2) |
C13—H13 | 0.9300 | C28—C29 | 1.500 (3) |
C14—O2 | 1.417 (2) | C28—H28A | 0.9700 |
C14—C15 | 1.493 (3) | C28—H28B | 0.9700 |
C14—H14A | 0.9700 | C29—C30 | 1.384 (3) |
C14—H14B | 0.9700 | C29—C34 | 1.389 (3) |
C15—C16 | 1.386 (2) | C30—C31 | 1.386 (3) |
C15—C20 | 1.388 (3) | C30—H30 | 0.9300 |
C16—C17 | 1.370 (3) | C31—C32 | 1.365 (3) |
C16—H16 | 0.9300 | C31—H31 | 0.9300 |
C17—C18 | 1.368 (3) | C32—C33 | 1.389 (3) |
C17—H17 | 0.9300 | C32—H32 | 0.9300 |
C18—C19 | 1.368 (3) | C33—C34 | 1.372 (3) |
C18—H18 | 0.9300 | C33—H33 | 0.9300 |
C19—C20 | 1.392 (3) | C34—H34 | 0.9300 |
C19—H19 | 0.9300 | O6—H6 | 0.87 (2) |
C20—H20 | 0.9300 | OW—HW1 | 0.88 (3) |
O3—C21' | 1.362 (4) | OW—HW2 | 0.78 (2) |
O1—C1—C2 | 111.21 (14) | C21—O3—C3 | 116.2 (2) |
O1—C1—S1 | 114.34 (12) | O3—C21—C22 | 109.4 (4) |
C2—C1—S1 | 108.15 (11) | O3—C21—H21A | 109.8 |
O1—C1—H1 | 107.6 | C22—C21—H21A | 109.8 |
C2—C1—H1 | 107.6 | O3—C21—H21B | 109.8 |
S1—C1—H1 | 107.6 | C22—C21—H21B | 109.8 |
O2—C2—C3 | 108.46 (14) | H21A—C21—H21B | 108.2 |
O2—C2—C1 | 109.45 (13) | C23—C22—C27 | 119.2 (6) |
C3—C2—C1 | 110.59 (14) | C23—C22—C21 | 120.9 (5) |
O2—C2—H2 | 109.4 | C27—C22—C21 | 119.5 (5) |
C3—C2—H2 | 109.4 | C22—C23—C24 | 121.0 (5) |
C1—C2—H2 | 109.4 | C22—C23—H23 | 119.5 |
O3—C3—C4 | 108.00 (14) | C24—C23—H23 | 119.5 |
O3—C3—C2 | 110.94 (15) | C23—C24—C25 | 120.4 (4) |
C4—C3—C2 | 111.68 (13) | C23—C24—H24 | 119.8 |
O3—C3—H3 | 108.7 | C25—C24—H24 | 119.8 |
C4—C3—H3 | 108.7 | C26—C25—C24 | 120.3 (5) |
C2—C3—H3 | 108.7 | C26—C25—H25 | 119.9 |
O4—C4—C3 | 108.98 (12) | C24—C25—H25 | 119.9 |
O4—C4—C5 | 105.68 (14) | C25—C26—C27 | 119.5 (5) |
C3—C4—C5 | 112.09 (14) | C25—C26—H26 | 120.2 |
O4—C4—H4 | 110.0 | C27—C26—H26 | 120.2 |
C3—C4—H4 | 110.0 | C26—C27—C22 | 119.6 (6) |
C5—C4—H4 | 110.0 | C26—C27—H27 | 120.2 |
O1—C5—C6 | 106.70 (11) | C22—C27—H27 | 120.2 |
O1—C5—C4 | 111.58 (13) | O3—C21'—C22' | 113.2 (5) |
C6—C5—C4 | 112.98 (14) | O3—C21'—H21C | 108.9 |
O1—C5—H5 | 108.5 | C22'—C21'—H21C | 108.9 |
C6—C5—H5 | 108.5 | O3—C21'—H21D | 108.9 |
C4—C5—H5 | 108.5 | C22'—C21'—H21D | 108.9 |
O6—C6—C5 | 110.21 (14) | H21C—C21'—H21D | 107.8 |
O6—C6—H6A | 109.6 | C23'—C22'—C27' | 117.2 (8) |
C5—C6—H6A | 109.6 | C23'—C22'—C21' | 122.1 (10) |
O6—C6—H6B | 109.6 | C27'—C22'—C21' | 120.6 (9) |
C5—C6—H6B | 109.6 | C22'—C23'—C24' | 122.3 (7) |
H6A—C6—H6B | 108.1 | C22'—C23'—H23' | 118.9 |
C9—C8—C13 | 119.53 (16) | C24'—C23'—H23' | 118.9 |
C9—C8—S1 | 117.95 (13) | C25'—C24'—C23' | 120.4 (7) |
C13—C8—S1 | 122.40 (14) | C25'—C24'—H24' | 119.8 |
C8—C9—C10 | 120.02 (17) | C23'—C24'—H24' | 119.8 |
C8—C9—H9 | 120.0 | C24'—C25'—C26' | 119.0 (7) |
C10—C9—H9 | 120.0 | C24'—C25'—H25' | 120.5 |
C11—C10—C9 | 120.23 (19) | C26'—C25'—H25' | 120.5 |
C11—C10—H10 | 119.9 | C25'—C26'—C27' | 120.3 (8) |
C9—C10—H10 | 119.9 | C25'—C26'—H26' | 119.9 |
C10—C11—C12 | 119.72 (18) | C27'—C26'—H26' | 119.9 |
C10—C11—H11 | 120.1 | C26'—C27'—C22' | 120.7 (9) |
C12—C11—H11 | 120.1 | C26'—C27'—H27' | 119.7 |
C11—C12—C13 | 120.66 (17) | C22'—C27'—H27' | 119.7 |
C11—C12—H12 | 119.7 | O4—C28—C29 | 108.24 (15) |
C13—C12—H12 | 119.7 | O4—C28—H28A | 110.0 |
C12—C13—C8 | 119.79 (18) | C29—C28—H28A | 110.0 |
C12—C13—H13 | 120.1 | O4—C28—H28B | 110.0 |
C8—C13—H13 | 120.1 | C29—C28—H28B | 110.0 |
O2—C14—C15 | 109.44 (16) | H28A—C28—H28B | 108.4 |
O2—C14—H14A | 109.8 | C30—C29—C34 | 118.92 (17) |
C15—C14—H14A | 109.8 | C30—C29—C28 | 120.18 (18) |
O2—C14—H14B | 109.8 | C34—C29—C28 | 120.90 (17) |
C15—C14—H14B | 109.8 | C29—C30—C31 | 120.1 (2) |
H14A—C14—H14B | 108.2 | C29—C30—H30 | 119.9 |
C16—C15—C20 | 118.96 (19) | C31—C30—H30 | 119.9 |
C16—C15—C14 | 120.41 (16) | C32—C31—C30 | 120.32 (19) |
C20—C15—C14 | 120.61 (18) | C32—C31—H31 | 119.8 |
C17—C16—C15 | 120.65 (18) | C30—C31—H31 | 119.8 |
C17—C16—H16 | 119.7 | C31—C32—C33 | 120.20 (19) |
C15—C16—H16 | 119.7 | C31—C32—H32 | 119.9 |
C18—C17—C16 | 120.4 (2) | C33—C32—H32 | 119.9 |
C18—C17—H17 | 119.8 | C34—C33—C32 | 119.5 (2) |
C16—C17—H17 | 119.8 | C34—C33—H33 | 120.2 |
C19—C18—C17 | 119.9 (2) | C32—C33—H33 | 120.2 |
C19—C18—H18 | 120.0 | C33—C34—C29 | 120.89 (18) |
C17—C18—H18 | 120.0 | C33—C34—H34 | 119.6 |
C18—C19—C20 | 120.51 (19) | C29—C34—H34 | 119.6 |
C18—C19—H19 | 119.7 | C1—O1—C5 | 114.61 (11) |
C20—C19—H19 | 119.7 | C14—O2—C2 | 116.02 (14) |
C15—C20—C19 | 119.52 (19) | C28—O4—C4 | 116.34 (13) |
C15—C20—H20 | 120.2 | C6—O6—H6 | 106.8 (14) |
C19—C20—H20 | 120.2 | HW1—OW—HW2 | 106 (2) |
C21'—O3—C21 | 40.1 (2) | C8—S1—C1 | 101.91 (8) |
C21'—O3—C3 | 115.02 (19) |
D—H···A | D—H | H···A | D···A | D—H···A |
OW—HW1···O2 | 0.88 (3) | 2.00 (3) | 2.861 (2) | 166 (2) |
OW—HW2···O6 | 0.78 (2) | 2.07 (2) | 2.827 (2) | 165 (2) |
O6—H6···OWi | 0.87 (2) | 1.89 (2) | 2.745 (2) | 169 (2) |
Symmetry code: (i) −x+1, y−1/2, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C33H34O5S·H2O |
Mr | 560.69 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 150 |
a, b, c (Å) | 12.628 (1), 8.084 (1), 14.832 (2) |
β (°) | 101.380 (5) |
V (Å3) | 1484.4 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.15 |
Crystal size (mm) | 0.35 × 0.30 × 0.17 |
Data collection | |
Diffractometer | Oxford Diffraction Gemini Ruby CCD diffractometer |
Absorption correction | Multi-scan (CrysAlis PRO; Oxford Diffraction, 2009) |
Tmin, Tmax | 0.948, 0.974 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12650, 5205, 4333 |
Rint | 0.022 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.030, 0.062, 0.97 |
No. of reflections | 5205 |
No. of parameters | 400 |
No. of restraints | 17 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.13, −0.17 |
Absolute structure | Flack (1983), 2381 Friedel pairs |
Absolute structure parameter | 0.01 (5) |
Computer programs: CrysAlis CCD (Oxford Diffraction, 2009), CrysAlis RED (Oxford Diffraction, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
OW—HW1···O2 | 0.88 (3) | 2.00 (3) | 2.861 (2) | 166 (2) |
OW—HW2···O6 | 0.78 (2) | 2.07 (2) | 2.827 (2) | 165 (2) |
O6—H6···OWi | 0.87 (2) | 1.89 (2) | 2.745 (2) | 169 (2) |
Symmetry code: (i) −x+1, y−1/2, −z+2. |
Acknowledgements
This work was supported in part by the Fonds National de la Recherche Scientifique (FNRS, Belgium).
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Oligosaccharides are natural ligands of lectins, which are important receptors involved in key biological processes. Efficient strategies for the regioselective transformations of monosaccharides to achieve glycosylation reactions or further functionalizations are of paramount importance. Furthermore, the knowledge of the conformations of carbohydrates alone or bound to protein gives access to key informations that can be exploited to understand biocatalytic processes or stereoelectronic effects (Caravano et al., 2003).
Numerous strategies of protections of mannopyranosides have been described in the litterature (e.g. Boons, 1991; Szurmai et al., 1994) in order to derivatise the primary alcohol. The title compound is also a key intermediate for the synthesis of heptosyl transferase inhibitors (Dohi et al., 2008; Grizot et al., 2006).
Crystal structure of the title compound confirms the expected relative stereochemistry : C1 R, C2 S, C3 S, C4 R, C5 R. The mannopyranoside adopts a chair conformation with puckering amplitude (Q) = 0.522 (3) Å, Theta = 3.6 (3) °, and Phi = 60 (5) ° (Cremer & Pople, 1975).
The 2-alpha-thiophenyl group on C1 and the O-benzyl group on C2 occupy an axial position, the two other O-benzyl groups (on C3 and C4) and carbon atom C6 occupying an equatorial position.
Thiophenyl-2,3,4-O-tri-benzyl-alpha-D-mannopyranoside co-crystallized with one water molecule (OW). This water molecule is part of a H bond network involving the primary alcohol O6 and also secondary alcohol O2 (Table 1). Packing is further reinforced by van der Waals interactions involving the aromatic rings.