organic compounds
Redetermination and α-hydroxyroyleanone
of 7aX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bCrystal Materials Research Unit, Department of Chemistry, Faculty of Science, Prince of Songkla University, Hat-Yai, Songkhla 90112, Thailand
*Correspondence e-mail: hkfun@usm.my
The title compound [systematic name: 7α,12-dihydroxy-8,12-abietadiene,11,14-dione or (4bS,8aS,10R)-3,10-dihydroxy-2-isopropyl-4b,8,8-trimethyl-1,4,4b,5,6,7,8,8a,9,10-decahydrophenanthrene-1,4-dione], C20H28O4, is an abietane diterpenoid, which was isolated from the roots of Premna obtusifolia (Verbenaceae). Its has been reported previously [Chen et al. (2000). Jiegou Huaxue, 19, 122–125], but the could not be determined using data collected with Mo radiation. This redetermination using Cu radiation shows the the absolute configurations of the stereogenic centres at positions 4b, 8a and 10 to be S, S and R, respectively. Two intramolecular O—H⋯O hydrogen bonds [one generating an S(5) ring and one generating an S(6) ring] and a number of short C—H⋯O contacts occur. In the crystal, molecules are linked into infinite chains propagating in [100] by O—H⋯O hydrogen bonds and weak C—H⋯O interactions.
Related literature
For background to Verbenaceae, diterpenes and their biological activity, see: Batista et al. (1994); Bunluepuech & Tewtrakul (2009); Jonathan et al. (1989); Kabouche et al. (2007); Kupchan et al. (1968, 1969); Nagy et al. (1999); Ulubelen et al. (2001). For the previous see: Chen et al. (2000). For hydrogen-bond motifs, see: Bernstein et al. (1995) and for ring conformations, see: Cremer & Pople (1975). For bond-length data, see: Allen et al. (1987). For the stability of the temperature controller used in the data collection, see Cosier & Glazer (1986).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536810020544/hb5468sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810020544/hb5468Isup2.hkl
The air-dried roots of premna obtusifolia (4.5 kg) were extracted with CH2Cl2 (2 × 20 L) at room temperature. The combined extracts were concentrated under reduced pressure to afford a dark yellow extract (40.5 g) which was subjected to quick
(QCC) over silica gel using solvents of increasing polarity from n-hexane to EtOAc to afford 12 fractions (F1—F12). Fraction F4 was further purified by QCC using hexane-acetone (9:1), yielding the title compound (57.5 mg). Yellow blocks of (I) were recrystallized from n-hexane after several days.Hydroxy H atoms attached to O1 and O3 were located from the difference map and isotropically refined. The remaining H atoms were placed in calculated positions with (C—H) = 0.98 for CH, 0.97 for CH2 and 0.96 Å for CH3 atoms. The Uiso values were constrained to be 1.5Ueq of the
for methyl H atoms and 1.2Ueq for the remaining H atoms. A rotating group model was used for the methyl groups. The highest residual electron density peak is located at 0.78 Å from H7A and the deepest hole is located at 0.95 Å from C11. 970 Friedel pairs were used to determine the absolute configuration.Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The structure of (I), showing 50% probability displacement ellipsoids. Intramolecular O—H···O hydrogen bonds are shown as dashed lines. | |
Fig. 2. The crystal packing of (I) viewed along the b axis, showing one dimensional chains along the [1 0 0]. Hydrogen bonds are shown as dashed lines. |
C20H28O4 | F(000) = 720 |
Mr = 332.42 | Dx = 1.266 Mg m−3 |
Orthorhombic, P212121 | Cu Kα radiation, λ = 1.54178 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 2578 reflections |
a = 7.6729 (1) Å | θ = 5.1–62.5° |
b = 9.3972 (1) Å | µ = 0.70 mm−1 |
c = 24.1946 (3) Å | T = 100 K |
V = 1744.52 (4) Å3 | Block, yellow |
Z = 4 | 0.28 × 0.28 × 0.20 mm |
Bruker APEXII DUO CCD diffractometer | 2578 independent reflections |
Radiation source: sealed tube | 2564 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.015 |
ϕ and ω scans | θmax = 62.5°, θmin = 5.1° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −7→8 |
Tmin = 0.829, Tmax = 0.871 | k = −10→10 |
6475 measured reflections | l = −27→27 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.027 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.074 | w = 1/[σ2(Fo2) + (0.0454P)2 + 0.3997P] where P = (Fo2 + 2Fc2)/3 |
S = 1.04 | (Δ/σ)max < 0.001 |
2578 reflections | Δρmax = 0.22 e Å−3 |
230 parameters | Δρmin = −0.13 e Å−3 |
0 restraints | Absolute structure: Flack (1983), 970 Friedel pairs |
Primary atom site location: structure-invariant direct methods | Absolute structure parameter: 0.13 (16) |
C20H28O4 | V = 1744.52 (4) Å3 |
Mr = 332.42 | Z = 4 |
Orthorhombic, P212121 | Cu Kα radiation |
a = 7.6729 (1) Å | µ = 0.70 mm−1 |
b = 9.3972 (1) Å | T = 100 K |
c = 24.1946 (3) Å | 0.28 × 0.28 × 0.20 mm |
Bruker APEXII DUO CCD diffractometer | 2578 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 2564 reflections with I > 2σ(I) |
Tmin = 0.829, Tmax = 0.871 | Rint = 0.015 |
6475 measured reflections |
R[F2 > 2σ(F2)] = 0.027 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.074 | Δρmax = 0.22 e Å−3 |
S = 1.04 | Δρmin = −0.13 e Å−3 |
2578 reflections | Absolute structure: Flack (1983), 970 Friedel pairs |
230 parameters | Absolute structure parameter: 0.13 (16) |
0 restraints |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.39089 (14) | 0.84016 (12) | 0.26305 (4) | 0.0253 (3) | |
H1O1 | 0.310 (3) | 0.830 (3) | 0.2374 (11) | 0.077 (9)* | |
O2 | 1.09134 (13) | 0.67838 (11) | 0.21951 (4) | 0.0216 (2) | |
O3 | 1.04729 (13) | 0.73182 (11) | 0.11546 (4) | 0.0209 (2) | |
H1O3 | 1.132 (3) | 0.720 (2) | 0.1363 (8) | 0.040 (6)* | |
O4 | 0.44447 (13) | 0.73046 (14) | 0.15053 (4) | 0.0300 (3) | |
C1 | 0.98219 (19) | 0.80709 (16) | 0.32516 (6) | 0.0198 (3) | |
H1A | 1.0903 | 0.7775 | 0.3079 | 0.024* | |
H1B | 0.9519 | 0.9001 | 0.3106 | 0.024* | |
C2 | 1.00975 (19) | 0.81849 (16) | 0.38772 (6) | 0.0228 (3) | |
H2A | 1.0508 | 0.7278 | 0.4018 | 0.027* | |
H2B | 1.0988 | 0.8892 | 0.3952 | 0.027* | |
C3 | 0.8428 (2) | 0.85964 (17) | 0.41773 (6) | 0.0233 (3) | |
H3A | 0.8124 | 0.9564 | 0.4076 | 0.028* | |
H3B | 0.8648 | 0.8584 | 0.4572 | 0.028* | |
C4 | 0.68635 (19) | 0.76239 (16) | 0.40536 (6) | 0.0204 (3) | |
C5 | 0.66970 (18) | 0.74674 (15) | 0.34161 (5) | 0.0173 (3) | |
H5A | 0.6466 | 0.8435 | 0.3284 | 0.021* | |
C6 | 0.51347 (18) | 0.66017 (16) | 0.32182 (6) | 0.0199 (3) | |
H6A | 0.5401 | 0.5594 | 0.3239 | 0.024* | |
H6B | 0.4137 | 0.6790 | 0.3453 | 0.024* | |
C7 | 0.47085 (18) | 0.70050 (16) | 0.26259 (6) | 0.0200 (3) | |
H7A | 0.3897 | 0.6310 | 0.2468 | 0.024* | |
C8 | 0.63225 (18) | 0.70964 (15) | 0.22719 (6) | 0.0181 (3) | |
C9 | 0.79457 (18) | 0.70681 (15) | 0.24799 (5) | 0.0158 (3) | |
C10 | 0.83719 (18) | 0.70011 (15) | 0.31011 (6) | 0.0169 (3) | |
C11 | 0.93920 (17) | 0.70252 (15) | 0.20709 (6) | 0.0171 (3) | |
C12 | 0.90331 (18) | 0.72713 (15) | 0.14720 (6) | 0.0168 (3) | |
C13 | 0.74123 (19) | 0.74250 (15) | 0.12654 (6) | 0.0182 (3) | |
C14 | 0.59663 (18) | 0.72713 (15) | 0.16633 (6) | 0.0188 (3) | |
C15 | 0.70086 (18) | 0.77406 (17) | 0.06671 (6) | 0.0211 (3) | |
H15A | 0.5738 | 0.7793 | 0.0632 | 0.025* | |
C16 | 0.7741 (2) | 0.91900 (17) | 0.04969 (7) | 0.0285 (4) | |
H16A | 0.7297 | 0.9912 | 0.0740 | 0.043* | |
H16B | 0.7397 | 0.9398 | 0.0124 | 0.043* | |
H16C | 0.8990 | 0.9169 | 0.0520 | 0.043* | |
C17 | 0.7642 (2) | 0.65721 (17) | 0.02752 (6) | 0.0260 (4) | |
H17A | 0.7154 | 0.5675 | 0.0386 | 0.039* | |
H17B | 0.8890 | 0.6519 | 0.0289 | 0.039* | |
H17C | 0.7278 | 0.6789 | −0.0095 | 0.039* | |
C18 | 0.5232 (2) | 0.83806 (18) | 0.42719 (6) | 0.0266 (3) | |
H18A | 0.5417 | 0.8660 | 0.4649 | 0.040* | |
H18B | 0.4253 | 0.7746 | 0.4252 | 0.040* | |
H18C | 0.5004 | 0.9209 | 0.4051 | 0.040* | |
C19 | 0.7033 (2) | 0.62112 (17) | 0.43667 (6) | 0.0248 (3) | |
H19A | 0.6847 | 0.6372 | 0.4754 | 0.037* | |
H19B | 0.8178 | 0.5827 | 0.4310 | 0.037* | |
H19C | 0.6179 | 0.5551 | 0.4231 | 0.037* | |
C20 | 0.8991 (2) | 0.54667 (15) | 0.32229 (6) | 0.0202 (3) | |
H20A | 0.9797 | 0.5171 | 0.2942 | 0.030* | |
H20B | 0.8005 | 0.4838 | 0.3225 | 0.030* | |
H20C | 0.9554 | 0.5439 | 0.3577 | 0.030* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0192 (5) | 0.0318 (6) | 0.0248 (5) | 0.0057 (5) | −0.0006 (5) | 0.0037 (5) |
O2 | 0.0130 (5) | 0.0305 (6) | 0.0214 (5) | 0.0023 (4) | −0.0010 (4) | −0.0002 (5) |
O3 | 0.0147 (5) | 0.0290 (6) | 0.0191 (5) | 0.0004 (5) | 0.0017 (4) | −0.0021 (5) |
O4 | 0.0148 (5) | 0.0531 (7) | 0.0221 (5) | −0.0006 (5) | −0.0031 (4) | 0.0068 (5) |
C1 | 0.0162 (7) | 0.0237 (7) | 0.0194 (7) | −0.0028 (6) | 0.0004 (6) | −0.0023 (6) |
C2 | 0.0203 (7) | 0.0257 (7) | 0.0224 (7) | −0.0049 (7) | −0.0038 (6) | −0.0034 (6) |
C3 | 0.0261 (8) | 0.0248 (8) | 0.0190 (7) | 0.0001 (7) | −0.0014 (7) | −0.0037 (6) |
C4 | 0.0194 (7) | 0.0250 (8) | 0.0168 (7) | 0.0035 (6) | 0.0000 (6) | 0.0000 (6) |
C5 | 0.0167 (7) | 0.0185 (7) | 0.0165 (6) | 0.0012 (6) | −0.0003 (6) | 0.0031 (6) |
C6 | 0.0159 (7) | 0.0256 (7) | 0.0183 (7) | −0.0006 (6) | 0.0021 (6) | 0.0016 (6) |
C7 | 0.0142 (6) | 0.0268 (7) | 0.0189 (7) | −0.0002 (7) | −0.0001 (6) | 0.0019 (6) |
C8 | 0.0168 (7) | 0.0183 (7) | 0.0192 (7) | −0.0001 (6) | −0.0008 (6) | 0.0000 (6) |
C9 | 0.0160 (7) | 0.0140 (6) | 0.0173 (7) | 0.0003 (6) | 0.0000 (6) | 0.0010 (6) |
C10 | 0.0138 (6) | 0.0193 (7) | 0.0177 (6) | 0.0001 (6) | −0.0003 (6) | 0.0003 (6) |
C11 | 0.0160 (7) | 0.0149 (7) | 0.0205 (7) | −0.0008 (6) | −0.0005 (6) | −0.0026 (5) |
C12 | 0.0163 (7) | 0.0163 (6) | 0.0178 (7) | −0.0003 (6) | 0.0028 (6) | −0.0030 (6) |
C13 | 0.0176 (7) | 0.0184 (7) | 0.0186 (7) | −0.0004 (6) | 0.0007 (6) | −0.0023 (6) |
C14 | 0.0159 (7) | 0.0207 (7) | 0.0198 (7) | 0.0012 (6) | −0.0017 (6) | −0.0002 (6) |
C15 | 0.0169 (7) | 0.0291 (8) | 0.0174 (7) | −0.0006 (7) | −0.0012 (6) | 0.0005 (6) |
C16 | 0.0341 (9) | 0.0277 (8) | 0.0237 (7) | 0.0022 (8) | −0.0033 (7) | 0.0057 (7) |
C17 | 0.0295 (8) | 0.0317 (8) | 0.0169 (7) | −0.0059 (8) | 0.0004 (7) | −0.0019 (6) |
C18 | 0.0247 (8) | 0.0348 (8) | 0.0204 (7) | 0.0048 (7) | 0.0022 (6) | 0.0003 (7) |
C19 | 0.0257 (8) | 0.0315 (8) | 0.0171 (7) | −0.0025 (7) | −0.0007 (7) | 0.0039 (6) |
C20 | 0.0195 (7) | 0.0211 (7) | 0.0199 (7) | 0.0019 (6) | −0.0028 (6) | −0.0007 (6) |
O1—C7 | 1.4488 (18) | C8—C9 | 1.344 (2) |
O1—H1O1 | 0.88 (3) | C8—C14 | 1.5066 (19) |
O2—C11 | 1.2266 (17) | C9—C11 | 1.4874 (19) |
O3—C12 | 1.3461 (17) | C9—C10 | 1.5394 (18) |
O3—H1O3 | 0.83 (2) | C10—C20 | 1.546 (2) |
O4—C14 | 1.2288 (18) | C11—C12 | 1.4931 (19) |
C1—C2 | 1.5322 (19) | C12—C13 | 1.348 (2) |
C1—C10 | 1.543 (2) | C13—C14 | 1.476 (2) |
C1—H1A | 0.9700 | C13—C15 | 1.5098 (19) |
C1—H1B | 0.9700 | C15—C17 | 1.530 (2) |
C2—C3 | 1.522 (2) | C15—C16 | 1.530 (2) |
C2—H2A | 0.9700 | C15—H15A | 0.9800 |
C2—H2B | 0.9700 | C16—H16A | 0.9600 |
C3—C4 | 1.538 (2) | C16—H16B | 0.9600 |
C3—H3A | 0.9700 | C16—H16C | 0.9600 |
C3—H3B | 0.9700 | C17—H17A | 0.9600 |
C4—C18 | 1.534 (2) | C17—H17B | 0.9600 |
C4—C19 | 1.534 (2) | C17—H17C | 0.9600 |
C4—C5 | 1.5547 (18) | C18—H18A | 0.9600 |
C5—C6 | 1.526 (2) | C18—H18B | 0.9600 |
C5—C10 | 1.5570 (19) | C18—H18C | 0.9600 |
C5—H5A | 0.9800 | C19—H19A | 0.9600 |
C6—C7 | 1.5178 (19) | C19—H19B | 0.9600 |
C6—H6A | 0.9700 | C19—H19C | 0.9600 |
C6—H6B | 0.9700 | C20—H20A | 0.9600 |
C7—C8 | 1.5082 (19) | C20—H20B | 0.9600 |
C7—H7A | 0.9800 | C20—H20C | 0.9600 |
C7—O1—H1O1 | 101.4 (19) | C1—C10—C20 | 109.94 (11) |
C12—O3—H1O3 | 107.0 (14) | C9—C10—C5 | 106.92 (11) |
C2—C1—C10 | 112.22 (12) | C1—C10—C5 | 107.24 (11) |
C2—C1—H1A | 109.2 | C20—C10—C5 | 115.00 (12) |
C10—C1—H1A | 109.2 | O2—C11—C9 | 123.52 (13) |
C2—C1—H1B | 109.2 | O2—C11—C12 | 116.22 (13) |
C10—C1—H1B | 109.2 | C9—C11—C12 | 120.26 (12) |
H1A—C1—H1B | 107.9 | O3—C12—C13 | 122.83 (12) |
C3—C2—C1 | 111.88 (12) | O3—C12—C11 | 114.03 (12) |
C3—C2—H2A | 109.2 | C13—C12—C11 | 123.13 (12) |
C1—C2—H2A | 109.2 | C12—C13—C14 | 116.18 (12) |
C3—C2—H2B | 109.2 | C12—C13—C15 | 124.46 (13) |
C1—C2—H2B | 109.2 | C14—C13—C15 | 119.36 (13) |
H2A—C2—H2B | 107.9 | O4—C14—C13 | 120.59 (13) |
C2—C3—C4 | 114.40 (12) | O4—C14—C8 | 118.62 (13) |
C2—C3—H3A | 108.7 | C13—C14—C8 | 120.78 (12) |
C4—C3—H3A | 108.7 | C13—C15—C17 | 112.84 (12) |
C2—C3—H3B | 108.7 | C13—C15—C16 | 110.95 (12) |
C4—C3—H3B | 108.7 | C17—C15—C16 | 110.82 (12) |
H3A—C3—H3B | 107.6 | C13—C15—H15A | 107.3 |
C18—C4—C19 | 107.48 (12) | C17—C15—H15A | 107.3 |
C18—C4—C3 | 107.13 (12) | C16—C15—H15A | 107.3 |
C19—C4—C3 | 110.61 (12) | C15—C16—H16A | 109.5 |
C18—C4—C5 | 108.58 (11) | C15—C16—H16B | 109.5 |
C19—C4—C5 | 114.52 (12) | H16A—C16—H16B | 109.5 |
C3—C4—C5 | 108.26 (11) | C15—C16—H16C | 109.5 |
C6—C5—C4 | 115.24 (11) | H16A—C16—H16C | 109.5 |
C6—C5—C10 | 110.17 (11) | H16B—C16—H16C | 109.5 |
C4—C5—C10 | 116.38 (11) | C15—C17—H17A | 109.5 |
C6—C5—H5A | 104.5 | C15—C17—H17B | 109.5 |
C4—C5—H5A | 104.5 | H17A—C17—H17B | 109.5 |
C10—C5—H5A | 104.5 | C15—C17—H17C | 109.5 |
C7—C6—C5 | 109.42 (12) | H17A—C17—H17C | 109.5 |
C7—C6—H6A | 109.8 | H17B—C17—H17C | 109.5 |
C5—C6—H6A | 109.8 | C4—C18—H18A | 109.5 |
C7—C6—H6B | 109.8 | C4—C18—H18B | 109.5 |
C5—C6—H6B | 109.8 | H18A—C18—H18B | 109.5 |
H6A—C6—H6B | 108.2 | C4—C18—H18C | 109.5 |
O1—C7—C8 | 107.49 (11) | H18A—C18—H18C | 109.5 |
O1—C7—C6 | 108.07 (12) | H18B—C18—H18C | 109.5 |
C8—C7—C6 | 111.93 (12) | C4—C19—H19A | 109.5 |
O1—C7—H7A | 109.8 | C4—C19—H19B | 109.5 |
C8—C7—H7A | 109.8 | H19A—C19—H19B | 109.5 |
C6—C7—H7A | 109.8 | C4—C19—H19C | 109.5 |
C9—C8—C14 | 122.44 (12) | H19A—C19—H19C | 109.5 |
C9—C8—C7 | 123.18 (12) | H19B—C19—H19C | 109.5 |
C14—C8—C7 | 114.35 (12) | C10—C20—H20A | 109.5 |
C8—C9—C11 | 116.29 (12) | C10—C20—H20B | 109.5 |
C8—C9—C10 | 124.29 (12) | H20A—C20—H20B | 109.5 |
C11—C9—C10 | 119.34 (12) | C10—C20—H20C | 109.5 |
C9—C10—C1 | 110.91 (11) | H20A—C20—H20C | 109.5 |
C9—C10—C20 | 106.82 (12) | H20B—C20—H20C | 109.5 |
C10—C1—C2—C3 | −56.85 (16) | C2—C1—C10—C5 | 55.46 (15) |
C1—C2—C3—C4 | 54.11 (17) | C6—C5—C10—C9 | 52.09 (15) |
C2—C3—C4—C18 | −166.79 (12) | C4—C5—C10—C9 | −174.34 (12) |
C2—C3—C4—C19 | 76.36 (15) | C6—C5—C10—C1 | 171.09 (11) |
C2—C3—C4—C5 | −49.87 (16) | C4—C5—C10—C1 | −55.33 (16) |
C18—C4—C5—C6 | −60.53 (17) | C6—C5—C10—C20 | −66.31 (15) |
C19—C4—C5—C6 | 59.57 (16) | C4—C5—C10—C20 | 67.26 (16) |
C3—C4—C5—C6 | −176.51 (12) | C8—C9—C11—O2 | −168.73 (14) |
C18—C4—C5—C10 | 168.22 (12) | C10—C9—C11—O2 | 8.2 (2) |
C19—C4—C5—C10 | −71.68 (16) | C8—C9—C11—C12 | 10.76 (19) |
C3—C4—C5—C10 | 52.23 (16) | C10—C9—C11—C12 | −172.31 (12) |
C4—C5—C6—C7 | 157.64 (12) | O2—C11—C12—O3 | −5.63 (19) |
C10—C5—C6—C7 | −68.21 (14) | C9—C11—C12—O3 | 174.85 (12) |
C5—C6—C7—O1 | −73.43 (14) | O2—C11—C12—C13 | 174.01 (13) |
C5—C6—C7—C8 | 44.75 (16) | C9—C11—C12—C13 | −5.5 (2) |
O1—C7—C8—C9 | 107.73 (15) | O3—C12—C13—C14 | 176.88 (13) |
C6—C7—C8—C9 | −10.8 (2) | C11—C12—C13—C14 | −2.7 (2) |
O1—C7—C8—C14 | −70.35 (15) | O3—C12—C13—C15 | −3.3 (2) |
C6—C7—C8—C14 | 171.12 (12) | C11—C12—C13—C15 | 177.11 (13) |
C14—C8—C9—C11 | −7.9 (2) | C12—C13—C14—O4 | −175.35 (15) |
C7—C8—C9—C11 | 174.19 (13) | C15—C13—C14—O4 | 4.8 (2) |
C14—C8—C9—C10 | 175.36 (13) | C12—C13—C14—C8 | 5.73 (19) |
C7—C8—C9—C10 | −2.6 (2) | C15—C13—C14—C8 | −174.11 (13) |
C8—C9—C10—C1 | −134.70 (14) | C9—C8—C14—O4 | −179.11 (15) |
C11—C9—C10—C1 | 48.64 (17) | C7—C8—C14—O4 | −1.0 (2) |
C8—C9—C10—C20 | 105.50 (16) | C9—C8—C14—C13 | −0.2 (2) |
C11—C9—C10—C20 | −71.16 (15) | C7—C8—C14—C13 | 177.93 (13) |
C8—C9—C10—C5 | −18.10 (19) | C12—C13—C15—C17 | 61.75 (19) |
C11—C9—C10—C5 | 165.24 (11) | C14—C13—C15—C17 | −118.43 (14) |
C2—C1—C10—C9 | 171.86 (12) | C12—C13—C15—C16 | −63.29 (18) |
C2—C1—C10—C20 | −70.22 (15) | C14—C13—C15—C16 | 116.53 (14) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···O2i | 0.88 (2) | 2.24 (3) | 2.9502 (15) | 137 (2) |
O1—H1O1···O4 | 0.88 (2) | 2.52 (3) | 2.9399 (14) | 109.8 (19) |
O3—H1O3···O2 | 0.83 (2) | 2.075 (19) | 2.5892 (14) | 119.8 (19) |
O3—H1O3···O4ii | 0.83 (2) | 2.42 (2) | 3.1635 (14) | 148.8 (18) |
C1—H1A···O2 | 0.97 | 2.33 | 2.9493 (18) | 121 |
C5—H5A···O1 | 0.98 | 2.52 | 2.9933 (17) | 110 |
C7—H7A···O2i | 0.98 | 2.42 | 3.0998 (17) | 126 |
C15—H15A···O4 | 0.98 | 2.38 | 2.8549 (17) | 109 |
C16—H16C···O3 | 0.96 | 2.58 | 3.1654 (19) | 119 |
C17—H17B···O3 | 0.96 | 2.53 | 3.1204 (18) | 119 |
C20—H20A···O2 | 0.96 | 2.51 | 3.1451 (18) | 124 |
Symmetry codes: (i) x−1, y, z; (ii) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C20H28O4 |
Mr | 332.42 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 100 |
a, b, c (Å) | 7.6729 (1), 9.3972 (1), 24.1946 (3) |
V (Å3) | 1744.52 (4) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.70 |
Crystal size (mm) | 0.28 × 0.28 × 0.20 |
Data collection | |
Diffractometer | Bruker APEXII DUO CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.829, 0.871 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6475, 2578, 2564 |
Rint | 0.015 |
(sin θ/λ)max (Å−1) | 0.575 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.027, 0.074, 1.04 |
No. of reflections | 2578 |
No. of parameters | 230 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.22, −0.13 |
Absolute structure | Flack (1983), 970 Friedel pairs |
Absolute structure parameter | 0.13 (16) |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···O2i | 0.88 (2) | 2.24 (3) | 2.9502 (15) | 137 (2) |
O1—H1O1···O4 | 0.88 (2) | 2.52 (3) | 2.9399 (14) | 109.8 (19) |
O3—H1O3···O2 | 0.83 (2) | 2.075 (19) | 2.5892 (14) | 119.8 (19) |
O3—H1O3···O4ii | 0.83 (2) | 2.42 (2) | 3.1635 (14) | 148.8 (18) |
C1—H1A···O2 | 0.97 | 2.33 | 2.9493 (18) | 121 |
C5—H5A···O1 | 0.98 | 2.52 | 2.9933 (17) | 110 |
C7—H7A···O2i | 0.98 | 2.42 | 3.0998 (17) | 126 |
C15—H15A···O4 | 0.98 | 2.38 | 2.8549 (17) | 109 |
C16—H16C···O3 | 0.96 | 2.58 | 3.1654 (19) | 119 |
C17—H17B···O3 | 0.96 | 2.53 | 3.1204 (18) | 119 |
C20—H20A···O2 | 0.96 | 2.51 | 3.1451 (18) | 124 |
Symmetry codes: (i) x−1, y, z; (ii) x+1, y, z. |
Acknowledgements
AWS thanks the Graduate School, Prince of Songkla University, for partial financial support. The authors thank the Prince of Songkla University for financial support through the Crystal Materials Research Unit. The authors also thank Universiti Sains Malaysia for the Research University Grant No. 1001/PFIZIK/811151.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The extracts of Verbenaceae plants were found to possess anti-HIV-1 integrase activity (Bunluepuech & Tewtrakul, 2009). Premna obtusifolia (Verbenaceae), a small tree found in the mangrove forests, is one of the Verbenaceae plants. As part of our study of chemical constituents and bioactive compounds from the roots of Premna obtusifolia (Verbenaceae) which were collected from Satun province in the southern part of Thailand, the title abietane diterpenoid (I) was isolated. It was known as horminone (Batista et al., 1994) or 7α-hydroxyroyleanone (Nagy et al., 1999) and the previous reports show that (I) exhibits significant biological activities as tumor inhibitors (Kupchan et al., 1968, 1969; Jonathan et al., 1989), antioxidant (Kabouche et al., 2007) and antibacterial agents (Ulubelen et al., 2001). The crystal structure of (I) has been reported (Chen et al., 2000) but the absolute configuration could not be determined due to no large anomalous dispersion using a data set collected with Mo radiation. Our data of (I) was collected using Cu radiation with Bruker Apex-Duo CCD diffractometer and the absolute configuration at atoms C10, C5 and C7 (or positions 4b, 8a and 10 of abietane diterpenoid) were determined as S,S,R making use of the large anomalous scattering of Cu Kα X-radiation with the Flack parameter being refined to 0.13 (16). We report herein the crystal structure of (I) determined from the Cu data.
The molecule of (I) has three fused six membered rings (Fig. 1). The two cyclohexanes rings are trans fused. One cyclohexane ring (C1–C5/C10) is in a standard chair conformation whereas the other (C5–C10) is in half chair conformation, with the puckering parameter Q = 0.5419 (15) Å, θ = 51.68 (16)° and ϕ = 21.6 (2)° (Cremer & Pople, 1975). The benzoquinone ring (C8–C9/C11–C14/O2/O4) is slightly twisted with the maximum deviations of 0.060 (1) and -0.052 (1) Å for atoms C9 and C11, respectively. The O2, O3 and O4 atoms lie close to the mean plane of the C8–C9/C11–C14 ring with the r.m.s. of 0.0543 (1). The bond angles around C11 and C14 are indicative of sp2 hybridization for these atoms. The orientation of the propanyl group is described by the torsion angles C14–C13–C15–C17 = -118.43 (14)° and C14–C13–C15–C16 = 116.53 (14)°. Intramolecular O1—H1O1···O4 and O3—H1O3···O2 hydrogen bonds (Table 1) generate S(6) and S(5) ring motifs, respectively (Fig. 1) (Bernstein et al., 1995). The bond distances in (I) are within normal ranges (Allen et al., 1987).
The crystal packing of (I) is stabilized by intermolecular O—H···O hydrogen bonds and weak C—H···O interactions (Fig. 2 and Table 1). The molecules are linked into infinite one dimensional chains along the [1 0 0] (Fig. 2) through O1—H1O1···O2 and O3—H1O3···O4 hydrogen bonds and weak C7—H7A···O2 interactions (Table 1).