Related literature
For the properties of benzylamines, see: Markwardt et al. (2005
). For a related structure, see: Dhaouadi et al. (2008
).
Experimental
Crystal data
C7H9ClN+·Cl−·0.5H2O Mr = 187.06 Monoclinic, C 2/c a = 30.462 (2) Å b = 4.890 (3) Å c = 11.738 (2) Å β = 99.97 (3)° V = 1722.1 (11) Å3 Z = 8 Ag Kα radiation λ = 0.56085 Å μ = 0.35 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm
|
Data collection
Enraf–Nonius TurboCAD-4 diffractometer 5908 measured reflections 4207 independent reflections 2217 reflections with I > 2σ(I) Rint = 0.031 2 standard reflections every 120 min intensity decay: 5%
|
D—H⋯A | D—H | H⋯A | D⋯A | D—H⋯A | N—H0A⋯Cl1i | 0.89 | 2.60 | 3.2930 (19) | 136 | N—H0A⋯Cl1ii | 0.89 | 2.78 | 3.417 (2) | 130 | N—H0B⋯O | 0.89 | 2.04 | 2.866 (2) | 155 | N—H0C⋯Cl1iii | 0.89 | 2.26 | 3.144 (2) | 175 | O—H1⋯Cl1 | 0.85 (3) | 2.28 (3) | 3.1230 (18) | 171 (3) | Symmetry codes: (i) ; (ii) ; (iii) . | |
Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994
); cell refinement: CAD-4 EXPRESS; data reduction: XCAD4 (Harms & Wocadlo, 1995
); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008
); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008
); molecular graphics: ORTEP-3 (Farrugia, 1997
); software used to prepare material for publication: WinGX (Farrugia, 1999
).
Supporting information
An ethanolic solution of 4-chlorobenzylamine (10 mmol, in 10 ml) was added, with stirring, to 20 ml of an aqueous HCl solution (0.5M) at room temperature. Colourless blocks of (I) were obtained on slow evaporation of the solvent.
All H atoms were positioned geometrically and treated as riding on their parent atoms, [N–H = 0.89, C–H =0.96 Å (CH3 ) with with Uiso(H) = 1.5Ueq and C–H =0.96 Å (Ar–H), with Uiso(H) = 1.5Ueq], but those attached to oxygen atom are located in a difference map
Data collection: CAD-4 EXPRESS (Enraf–Nonius, 1994); cell refinement: CAD-4 EXPRESS (Enraf–Nonius, 1994); data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997); software used to prepare material for publication: WinGX (Farrugia, 1999).
(4-Chlorophenyl)methanaminium chloride hemihydrate
top Crystal data top C7H9ClN+·Cl−·0.5H2O | F(000) = 776 |
Mr = 187.06 | Dx = 1.443 Mg m−3 |
Monoclinic, C2/c | Ag Kα radiation, λ = 0.56085 Å |
Hall symbol: -C 2yc | Cell parameters from 25 reflections |
a = 30.462 (2) Å | θ = 9–11° |
b = 4.890 (3) Å | µ = 0.35 mm−1 |
c = 11.738 (2) Å | T = 293 K |
β = 99.97 (3)° | Block, colourless |
V = 1722.1 (11) Å3 | 0.30 × 0.25 × 0.20 mm |
Z = 8 | |
Data collection top Enraf–Nonius TurboCAD-4 diffractometer | Rint = 0.031 |
Radiation source: fine-focus sealed tube | θmax = 28.0°, θmin = 2.3° |
Graphite monochromator | h = −50→50 |
non–profiled ω scans | k = 0→8 |
5908 measured reflections | l = −5→19 |
4207 independent reflections | 2 standard reflections every 120 min |
2217 reflections with I > 2σ(I) | intensity decay: 5% |
Refinement top Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.048 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.130 | w = 1/[σ2(Fo2) + (0.0585P)2 + 0.2911P] where P = (Fo2 + 2Fc2)/3 |
S = 1.00 | (Δ/σ)max = 0.001 |
4207 reflections | Δρmax = 0.34 e Å−3 |
101 parameters | Δρmin = −0.32 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0080 (12) |
Crystal data top C7H9ClN+·Cl−·0.5H2O | V = 1722.1 (11) Å3 |
Mr = 187.06 | Z = 8 |
Monoclinic, C2/c | Ag Kα radiation, λ = 0.56085 Å |
a = 30.462 (2) Å | µ = 0.35 mm−1 |
b = 4.890 (3) Å | T = 293 K |
c = 11.738 (2) Å | 0.30 × 0.25 × 0.20 mm |
β = 99.97 (3)° | |
Data collection top Enraf–Nonius TurboCAD-4 diffractometer | Rint = 0.031 |
5908 measured reflections | 2 standard reflections every 120 min |
4207 independent reflections | intensity decay: 5% |
2217 reflections with I > 2σ(I) | |
Refinement top R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.130 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.00 | Δρmax = 0.34 e Å−3 |
4207 reflections | Δρmin = −0.32 e Å−3 |
101 parameters | |
Special details top Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
Fractional atomic coordinates and isotropic or equivalent isotropic displacement parameters (Å2) top | x | y | z | Uiso*/Ueq | |
Cl1 | 0.049348 (13) | 0.63727 (9) | 0.11132 (4) | 0.04257 (13) | |
O | 0.0000 | 0.2285 (4) | 0.2500 | 0.0494 (5) | |
H1 | 0.0151 (8) | 0.323 (5) | 0.210 (2) | 0.089 (9)* | |
C1 | 0.12851 (4) | 0.0280 (3) | 0.40289 (14) | 0.0313 (3) | |
C2 | 0.12629 (5) | 0.1317 (3) | 0.29253 (14) | 0.0364 (3) | |
H2 | 0.1048 | 0.0661 | 0.2328 | 0.044* | |
C3 | 0.15582 (5) | 0.3328 (3) | 0.26977 (14) | 0.0371 (3) | |
H3 | 0.1538 | 0.4046 | 0.1957 | 0.045* | |
C4 | 0.18814 (4) | 0.4244 (3) | 0.35851 (14) | 0.0329 (3) | |
C5 | 0.19059 (5) | 0.3278 (4) | 0.46938 (15) | 0.0386 (4) | |
H5 | 0.2121 | 0.3947 | 0.5289 | 0.046* | |
C6 | 0.16065 (5) | 0.1293 (4) | 0.49129 (14) | 0.0380 (3) | |
H6 | 0.1621 | 0.0631 | 0.5661 | 0.046* | |
C7 | 0.09748 (5) | −0.1977 (3) | 0.42512 (18) | 0.0399 (4) | |
H7A | 0.0966 | −0.3362 | 0.3656 | 0.048* | |
H7B | 0.1090 | −0.2824 | 0.4990 | 0.048* | |
Cl2 | 0.225682 (14) | 0.66901 (9) | 0.32754 (5) | 0.04948 (15) | |
N | 0.05166 (4) | −0.0999 (3) | 0.42641 (13) | 0.0404 (3) | |
H0A | 0.0347 | −0.2400 | 0.4401 | 0.061* | |
H0B | 0.0406 | −0.0261 | 0.3582 | 0.061* | |
H0C | 0.0521 | 0.0251 | 0.4817 | 0.061* | |
Atomic displacement parameters (Å2) top | U11 | U22 | U33 | U12 | U13 | U23 |
Cl1 | 0.0390 (2) | 0.0365 (2) | 0.0527 (3) | 0.00140 (16) | 0.00925 (17) | 0.00195 (19) |
O | 0.0523 (11) | 0.0428 (10) | 0.0574 (12) | 0.000 | 0.0215 (9) | 0.000 |
C1 | 0.0289 (6) | 0.0260 (6) | 0.0403 (8) | 0.0011 (5) | 0.0097 (6) | −0.0002 (6) |
C2 | 0.0372 (7) | 0.0376 (8) | 0.0333 (8) | −0.0070 (6) | 0.0033 (6) | −0.0044 (7) |
C3 | 0.0441 (8) | 0.0367 (8) | 0.0314 (8) | −0.0060 (7) | 0.0086 (6) | 0.0008 (7) |
C4 | 0.0281 (6) | 0.0281 (6) | 0.0444 (9) | −0.0017 (5) | 0.0117 (6) | −0.0042 (6) |
C5 | 0.0318 (7) | 0.0436 (9) | 0.0388 (9) | −0.0035 (6) | 0.0011 (6) | −0.0064 (7) |
C6 | 0.0388 (7) | 0.0407 (8) | 0.0342 (8) | 0.0015 (7) | 0.0057 (6) | 0.0049 (7) |
C7 | 0.0384 (7) | 0.0263 (7) | 0.0577 (11) | 0.0010 (6) | 0.0153 (7) | 0.0043 (7) |
Cl2 | 0.0432 (2) | 0.0391 (2) | 0.0709 (3) | −0.01276 (17) | 0.0229 (2) | −0.0055 (2) |
N | 0.0339 (6) | 0.0355 (7) | 0.0529 (9) | −0.0069 (5) | 0.0101 (6) | 0.0005 (6) |
Geometric parameters (Å, º) top O—H1 | 0.84 (2) | C5—C6 | 1.386 (2) |
C1—C2 | 1.382 (2) | C5—H5 | 0.9300 |
C1—C6 | 1.389 (2) | C6—H6 | 0.9300 |
C1—C7 | 1.505 (2) | C7—N | 1.4779 (19) |
C2—C3 | 1.389 (2) | C7—H7A | 0.9700 |
C2—H2 | 0.9300 | C7—H7B | 0.9700 |
C3—C4 | 1.379 (2) | N—H0A | 0.8900 |
C3—H3 | 0.9300 | N—H0B | 0.8900 |
C4—C5 | 1.374 (2) | N—H0C | 0.8900 |
C4—Cl2 | 1.7361 (15) | | |
| | | |
C2—C1—C6 | 118.89 (14) | C5—C6—C1 | 120.84 (15) |
C2—C1—C7 | 120.10 (15) | C5—C6—H6 | 119.6 |
C6—C1—C7 | 120.98 (15) | C1—C6—H6 | 119.6 |
C1—C2—C3 | 120.78 (15) | N—C7—C1 | 112.77 (13) |
C1—C2—H2 | 119.6 | N—C7—H7A | 109.0 |
C3—C2—H2 | 119.6 | C1—C7—H7A | 109.0 |
C4—C3—C2 | 119.10 (15) | N—C7—H7B | 109.0 |
C4—C3—H3 | 120.5 | C1—C7—H7B | 109.0 |
C2—C3—H3 | 120.5 | H7A—C7—H7B | 107.8 |
C5—C4—C3 | 121.21 (14) | C7—N—H0A | 109.5 |
C5—C4—Cl2 | 120.36 (12) | C7—N—H0B | 109.5 |
C3—C4—Cl2 | 118.42 (13) | H0A—N—H0B | 109.5 |
C4—C5—C6 | 119.14 (14) | C7—N—H0C | 109.5 |
C4—C5—H5 | 120.4 | H0A—N—H0C | 109.5 |
C6—C5—H5 | 120.4 | H0B—N—H0C | 109.5 |
Hydrogen-bond geometry (Å, º) top D—H···A | D—H | H···A | D···A | D—H···A |
N—H0A···Cl1i | 0.89 | 2.60 | 3.2930 (19) | 136 |
N—H0A···Cl1ii | 0.89 | 2.78 | 3.417 (2) | 130 |
N—H0B···O | 0.89 | 2.04 | 2.866 (2) | 155 |
N—H0C···Cl1iii | 0.89 | 2.26 | 3.144 (2) | 175 |
O—H1···Cl1 | 0.85 (3) | 2.28 (3) | 3.1230 (18) | 171 (3) |
Symmetry codes: (i) −x, y−1, −z+1/2; (ii) x, −y, z+1/2; (iii) x, −y+1, z+1/2. |
Experimental details
Crystal data |
Chemical formula | C7H9ClN+·Cl−·0.5H2O |
Mr | 187.06 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 30.462 (2), 4.890 (3), 11.738 (2) |
β (°) | 99.97 (3) |
V (Å3) | 1722.1 (11) |
Z | 8 |
Radiation type | Ag Kα, λ = 0.56085 Å |
µ (mm−1) | 0.35 |
Crystal size (mm) | 0.30 × 0.25 × 0.20 |
|
Data collection |
Diffractometer | Enraf–Nonius TurboCAD-4 diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5908, 4207, 2217 |
Rint | 0.031 |
(sin θ/λ)max (Å−1) | 0.836 |
|
Refinement |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.130, 1.00 |
No. of reflections | 4207 |
No. of parameters | 101 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.34, −0.32 |
Hydrogen-bond geometry (Å, º) top D—H···A | D—H | H···A | D···A | D—H···A |
N—H0A···Cl1i | 0.89 | 2.60 | 3.2930 (19) | 136 |
N—H0A···Cl1ii | 0.89 | 2.78 | 3.417 (2) | 130 |
N—H0B···O | 0.89 | 2.04 | 2.866 (2) | 155 |
N—H0C···Cl1iii | 0.89 | 2.26 | 3.144 (2) | 175 |
O—H1···Cl1 | 0.85 (3) | 2.28 (3) | 3.1230 (18) | 171 (3) |
Symmetry codes: (i) −x, y−1, −z+1/2; (ii) x, −y, z+1/2; (iii) x, −y+1, z+1/2. |
References
Dhaouadi, H., Marouani, H., Rzaigui, M. & Madani, A. (2008). Mater. Res. Bull. 43, 3234–3244. Web of Science CSD CrossRef CAS Google Scholar
Enraf–Nonius (1994). CAD-4 EXPRESS. Enraf–Nonius, Delft, The Netherlands. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Harms, K. & Wocadlo, S. (1995). XCAD4. University of Marburg, Germany. Google Scholar
Markwardt, F., Landmann, H. & Walsmann, P. (2005). Eur. J. Biochem. 6, 502–506. CrossRef Web of Science Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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Derivatives of benzylamine were found to be competitive inhibitors of the proteolytic enzymes trypsin, plasmin, and thrombin. So, the 4-chlorobenzylamine is a strong thrombin inhibitor but only of low effectiveness against trypsin and plasmin for the hydrolysis of N-α-benzoyl catalyzed by these three enzymes. Relations between the chemical structure and the activity against trypsin, plasmin and thrombin were deduced by comparing the inhibitor constants (Markwardt, F. et al., 2005). In this work, we report the crystal structure of the title compound (I). As shown in (Fig.1), the asymmetric unit of (I) is built up from one 4-chlorobenzylammonium cation, one chloride anion and one water molecule. The Cl- anions, water molecules and R—NH3+ groups are lineked via O—H···Cl, N—H···O and N—H···Cl hydrogen bonds and ionic interactions, so as to built inorganic layers spreading around the (b,c) planes. The 4-chlorobenzylammonium cations are anchored onto the successive inorganic layers via hydrogen bonds and electrostatic interactions, to composite their negative charges.
The examination of the organic cation shows that the values of N—C, C—C, C—Cl distances and N—C—C, C—C—C, C—C—Cl angles range from 1.376 (3) to 1.736 (3) Å and 115.72 (19) to 122.80 (19)°, respectively. These values show no significant difference from those obtained in other organic materials associated with the same organic groups (Dhaouadi, H. et al., 2008).
In this structure, the water molecules play a very important role in the cohesion of the various groups. It participates with the organic cations and chloride anions in the H-bonding scheme of N—H···O and O—H···Cl interactions in the crystal structure. The four hydrogen bonds are relatively weak, and their donor acceptor distances vary from 2.866 (2) to 3.417 (3) Å. Thus, these different interactions (hydrogen bonds, Van der Waals, and electrostatic) form a stable three-dimensional network.