organic compounds
1-Acetyl-3-[2-(2,3,5,6-tetrafluorophenyl)hydrazin-1-ylidene]indolin-2-one
aDepartment of Chemistry, Bahauddin Zakariya University, Multan 60800, Pakistan, and bDepartment of Physics, University of Sargodha, Sargodha, Pakistan
*Correspondence e-mail: dmntahir_uos@yahoo.com
In the title compound, C16H9F4N3O2, the dihedral angle between the aromatic ring systems is 4.10 (14)° and a bifurcated intramolecular N—H⋯(O,F) hydrogen bond generates an S(6) ring for the O-atom acceptor and an S(5) ring for the F-atom acceptor. A short C—H⋯O conact also occurs. In the crystal, molecules are linked by C—H⋯O interactions.
Related literature
For background on related isatin derivatives, see: Pervez et al. (2007, 2008, 2010a). For related structures, see: Abad et al. (2006); Pervez et al. (2010b). For graph-set notation, see: Bernstein et al. (1995).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON.
Supporting information
10.1107/S1600536810022580/hb5498sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810022580/hb5498Isup2.hkl
A solution of 1-acetylisatin (0.95 g, 5.0 mmol) in ethanol (50 ml) was added to the solution of 2,3,5,6-tetrafluorophenyl hydrazine (0.90 g, 5.0 mmol) made in concentrated sulfuric acid (8 ml) and diluted with ethanol (50 ml). The reaction mixture was then refluxed for 30 min. The bright yellow crystalline solid formed during refluxing was collected by suction filtration. Thorough washing with hot ethanol furnished the desired compound (I) in pure form (0.40 g, 23%), m.p. 445 K. Bright yellow prisms of (I) were grown in chloroform by slow evaporation method at room temperature.
In the absence of anamolous scattering, the Friedal pairs were merged before
The H-atoms were positioned geometrically (N–H = 0.86 Å, C–H = 0.93–0.96 Å) and refined as riding with Uiso(H) = xUeq(C, N), where x = 1.5 for methyl and x = 1.2 for all other H-atoms.Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).C16H9F4N3O2 | F(000) = 356 |
Mr = 351.26 | Dx = 1.589 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 749 reflections |
a = 9.8993 (19) Å | θ = 2.6–25.3° |
b = 4.7740 (6) Å | µ = 0.14 mm−1 |
c = 16.066 (3) Å | T = 296 K |
β = 104.807 (8)° | Prism, yellow |
V = 734.0 (2) Å3 | 0.32 × 0.24 × 0.22 mm |
Z = 2 |
Bruker Kappa APEXII CCD diffractometer | 1462 independent reflections |
Radiation source: fine-focus sealed tube | 749 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.087 |
Detector resolution: 8.10 pixels mm-1 | θmax = 25.3°, θmin = 2.1° |
ω scans | h = −11→11 |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −5→5 |
Tmin = 0.942, Tmax = 0.952 | l = −19→19 |
6095 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.046 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.080 | H-atom parameters constrained |
S = 0.96 | w = 1/[σ2(Fo2) + (0.0218P)2] where P = (Fo2 + 2Fc2)/3 |
1462 reflections | (Δ/σ)max < 0.001 |
227 parameters | Δρmax = 0.14 e Å−3 |
1 restraint | Δρmin = −0.18 e Å−3 |
C16H9F4N3O2 | V = 734.0 (2) Å3 |
Mr = 351.26 | Z = 2 |
Monoclinic, P21 | Mo Kα radiation |
a = 9.8993 (19) Å | µ = 0.14 mm−1 |
b = 4.7740 (6) Å | T = 296 K |
c = 16.066 (3) Å | 0.32 × 0.24 × 0.22 mm |
β = 104.807 (8)° |
Bruker Kappa APEXII CCD diffractometer | 1462 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 749 reflections with I > 2σ(I) |
Tmin = 0.942, Tmax = 0.952 | Rint = 0.087 |
6095 measured reflections |
R[F2 > 2σ(F2)] = 0.046 | 1 restraint |
wR(F2) = 0.080 | H-atom parameters constrained |
S = 0.96 | Δρmax = 0.14 e Å−3 |
1462 reflections | Δρmin = −0.18 e Å−3 |
227 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
F1 | 0.3005 (3) | −0.4142 (6) | 0.06872 (17) | 0.0638 (12) | |
F2 | 0.4748 (3) | −0.8205 (7) | 0.0458 (2) | 0.0791 (16) | |
F3 | 0.7604 (3) | −0.6503 (7) | 0.3236 (2) | 0.0843 (14) | |
F4 | 0.5877 (3) | −0.2576 (8) | 0.34942 (19) | 0.0820 (14) | |
O1 | −0.1264 (4) | 0.8071 (9) | 0.2007 (3) | 0.0780 (17) | |
O2 | 0.1041 (3) | 0.1514 (8) | 0.1326 (2) | 0.0613 (14) | |
N1 | 0.3432 (4) | 0.0297 (9) | 0.2843 (3) | 0.0520 (17) | |
N2 | 0.3382 (4) | −0.1238 (9) | 0.2140 (3) | 0.0492 (17) | |
N3 | 0.0446 (4) | 0.4800 (9) | 0.2270 (3) | 0.0472 (17) | |
C1 | 0.2424 (5) | 0.2126 (11) | 0.2794 (3) | 0.045 (2) | |
C2 | 0.2254 (6) | 0.3936 (11) | 0.3472 (3) | 0.048 (2) | |
C3 | 0.3062 (6) | 0.4269 (12) | 0.4321 (4) | 0.067 (3) | |
C4 | 0.2608 (7) | 0.6204 (15) | 0.4832 (4) | 0.085 (3) | |
C5 | 0.1400 (8) | 0.7727 (13) | 0.4520 (4) | 0.082 (3) | |
C6 | 0.0581 (6) | 0.7417 (12) | 0.3682 (4) | 0.064 (3) | |
C7 | 0.1054 (5) | 0.5532 (10) | 0.3168 (3) | 0.046 (2) | |
C8 | 0.1251 (5) | 0.2667 (11) | 0.2034 (3) | 0.047 (2) | |
C9 | −0.0694 (6) | 0.6214 (14) | 0.1721 (4) | 0.057 (2) | |
C10 | −0.1145 (5) | 0.5317 (13) | 0.0791 (3) | 0.078 (3) | |
C11 | 0.4358 (5) | −0.3222 (11) | 0.2091 (3) | 0.0415 (19) | |
C12 | 0.4162 (5) | −0.4726 (11) | 0.1331 (3) | 0.046 (2) | |
C13 | 0.5063 (6) | −0.6775 (12) | 0.1212 (4) | 0.055 (2) | |
C14 | 0.6244 (6) | −0.7476 (12) | 0.1850 (4) | 0.058 (3) | |
C15 | 0.6455 (6) | −0.5977 (13) | 0.2589 (4) | 0.055 (2) | |
C16 | 0.5565 (6) | −0.3921 (11) | 0.2732 (3) | 0.052 (2) | |
H2 | 0.26986 | −0.09659 | 0.16945 | 0.0589* | |
H3 | 0.38710 | 0.32286 | 0.45329 | 0.0808* | |
H4 | 0.31279 | 0.64831 | 0.53964 | 0.1016* | |
H5 | 0.11238 | 0.90027 | 0.48823 | 0.0984* | |
H6 | −0.02410 | 0.84251 | 0.34781 | 0.0768* | |
H10A | −0.19107 | 0.64643 | 0.04892 | 0.1164* | |
H10B | −0.14341 | 0.33917 | 0.07589 | 0.1164* | |
H10C | −0.03772 | 0.55230 | 0.05320 | 0.1164* | |
H14 | 0.68534 | −0.88833 | 0.17772 | 0.0692* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1 | 0.059 (2) | 0.066 (2) | 0.058 (2) | 0.0084 (17) | −0.0006 (16) | 0.0018 (17) |
F2 | 0.096 (3) | 0.066 (2) | 0.078 (3) | 0.010 (2) | 0.027 (2) | −0.013 (2) |
F3 | 0.062 (2) | 0.101 (3) | 0.083 (2) | 0.018 (2) | 0.006 (2) | 0.024 (2) |
F4 | 0.077 (2) | 0.098 (3) | 0.060 (2) | 0.013 (2) | −0.0025 (19) | −0.010 (2) |
O1 | 0.075 (3) | 0.076 (3) | 0.083 (3) | 0.029 (3) | 0.020 (2) | 0.002 (2) |
O2 | 0.061 (2) | 0.070 (3) | 0.052 (2) | 0.010 (2) | 0.013 (2) | −0.010 (2) |
N1 | 0.062 (3) | 0.047 (3) | 0.048 (3) | −0.006 (3) | 0.016 (2) | −0.002 (3) |
N2 | 0.042 (3) | 0.055 (3) | 0.048 (3) | 0.008 (2) | 0.007 (2) | −0.001 (3) |
N3 | 0.048 (3) | 0.039 (3) | 0.055 (3) | 0.008 (2) | 0.014 (3) | 0.006 (2) |
C1 | 0.048 (4) | 0.038 (4) | 0.051 (4) | 0.003 (3) | 0.015 (3) | 0.008 (3) |
C2 | 0.058 (4) | 0.043 (4) | 0.045 (4) | −0.004 (3) | 0.018 (3) | 0.002 (3) |
C3 | 0.075 (4) | 0.069 (5) | 0.055 (4) | 0.010 (4) | 0.011 (4) | −0.004 (4) |
C4 | 0.105 (6) | 0.083 (6) | 0.062 (5) | 0.003 (5) | 0.014 (4) | −0.015 (4) |
C5 | 0.112 (6) | 0.068 (5) | 0.073 (5) | 0.001 (5) | 0.035 (4) | −0.020 (4) |
C6 | 0.067 (4) | 0.056 (4) | 0.074 (5) | 0.007 (3) | 0.027 (4) | −0.003 (4) |
C7 | 0.053 (4) | 0.037 (4) | 0.050 (4) | −0.004 (3) | 0.016 (3) | −0.001 (3) |
C8 | 0.049 (4) | 0.042 (4) | 0.051 (4) | −0.003 (3) | 0.017 (3) | 0.006 (3) |
C9 | 0.051 (4) | 0.057 (4) | 0.066 (4) | 0.005 (3) | 0.022 (3) | 0.008 (3) |
C10 | 0.072 (4) | 0.095 (5) | 0.057 (4) | 0.019 (4) | 0.000 (3) | 0.000 (4) |
C11 | 0.040 (3) | 0.037 (3) | 0.051 (4) | −0.001 (3) | 0.018 (3) | 0.010 (3) |
C12 | 0.046 (4) | 0.040 (4) | 0.052 (4) | 0.006 (3) | 0.013 (3) | 0.006 (3) |
C13 | 0.068 (4) | 0.045 (4) | 0.055 (4) | 0.001 (3) | 0.020 (4) | −0.002 (3) |
C14 | 0.057 (4) | 0.044 (4) | 0.078 (5) | 0.008 (3) | 0.028 (4) | 0.012 (4) |
C15 | 0.044 (4) | 0.057 (4) | 0.064 (4) | 0.009 (3) | 0.012 (3) | 0.021 (4) |
C16 | 0.051 (4) | 0.056 (4) | 0.048 (4) | −0.009 (3) | 0.013 (3) | −0.006 (3) |
F1—C12 | 1.362 (6) | C4—C5 | 1.380 (10) |
F2—C13 | 1.356 (7) | C5—C6 | 1.391 (9) |
F3—C15 | 1.354 (7) | C6—C7 | 1.382 (8) |
F4—C16 | 1.347 (6) | C9—C10 | 1.508 (8) |
O1—C9 | 1.203 (8) | C11—C16 | 1.404 (7) |
O2—C8 | 1.233 (6) | C11—C12 | 1.387 (7) |
N1—N2 | 1.337 (6) | C12—C13 | 1.370 (8) |
N1—C1 | 1.313 (7) | C13—C14 | 1.385 (9) |
N2—C11 | 1.370 (7) | C14—C15 | 1.356 (9) |
N3—C7 | 1.457 (7) | C15—C16 | 1.377 (8) |
N3—C8 | 1.404 (7) | C3—H3 | 0.9300 |
N3—C9 | 1.414 (8) | C4—H4 | 0.9300 |
N2—H2 | 0.8600 | C5—H5 | 0.9300 |
C1—C8 | 1.477 (7) | C6—H6 | 0.9300 |
C1—C2 | 1.434 (7) | C10—H10A | 0.9600 |
C2—C7 | 1.391 (8) | C10—H10B | 0.9600 |
C2—C3 | 1.403 (8) | C10—H10C | 0.9600 |
C3—C4 | 1.385 (9) | C14—H14 | 0.9300 |
N2—N1—C1 | 116.8 (4) | F1—C12—C13 | 119.4 (5) |
N1—N2—C11 | 123.6 (4) | C11—C12—C13 | 122.9 (5) |
C7—N3—C8 | 108.8 (4) | F1—C12—C11 | 117.7 (4) |
C7—N3—C9 | 124.4 (4) | C12—C13—C14 | 121.7 (5) |
C8—N3—C9 | 126.6 (5) | F2—C13—C12 | 118.4 (5) |
N1—N2—H2 | 118.00 | F2—C13—C14 | 119.9 (5) |
C11—N2—H2 | 118.00 | C13—C14—C15 | 115.6 (6) |
N1—C1—C2 | 126.2 (5) | F3—C15—C16 | 116.9 (5) |
N1—C1—C8 | 126.2 (5) | C14—C15—C16 | 124.1 (6) |
C2—C1—C8 | 107.6 (4) | F3—C15—C14 | 119.1 (5) |
C1—C2—C3 | 131.2 (5) | C11—C16—C15 | 120.5 (5) |
C3—C2—C7 | 120.2 (5) | F4—C16—C11 | 120.5 (5) |
C1—C2—C7 | 108.6 (4) | F4—C16—C15 | 118.9 (5) |
C2—C3—C4 | 117.5 (6) | C2—C3—H3 | 121.00 |
C3—C4—C5 | 121.2 (6) | C4—C3—H3 | 121.00 |
C4—C5—C6 | 122.2 (6) | C3—C4—H4 | 119.00 |
C5—C6—C7 | 116.4 (6) | C5—C4—H4 | 119.00 |
C2—C7—C6 | 122.5 (5) | C4—C5—H5 | 119.00 |
N3—C7—C2 | 108.4 (4) | C6—C5—H5 | 119.00 |
N3—C7—C6 | 129.1 (5) | C5—C6—H6 | 122.00 |
N3—C8—C1 | 106.5 (4) | C7—C6—H6 | 122.00 |
O2—C8—N3 | 126.9 (5) | C9—C10—H10A | 110.00 |
O2—C8—C1 | 126.6 (5) | C9—C10—H10B | 109.00 |
O1—C9—N3 | 119.4 (6) | C9—C10—H10C | 109.00 |
O1—C9—C10 | 122.6 (6) | H10A—C10—H10B | 109.00 |
N3—C9—C10 | 118.0 (5) | H10A—C10—H10C | 109.00 |
N2—C11—C12 | 117.8 (4) | H10B—C10—H10C | 109.00 |
C12—C11—C16 | 115.1 (5) | C13—C14—H14 | 122.00 |
N2—C11—C16 | 127.1 (5) | C15—C14—H14 | 122.00 |
C1—N1—N2—C11 | 179.8 (5) | C1—C2—C7—C6 | 177.8 (5) |
N2—N1—C1—C2 | 178.5 (5) | C3—C2—C7—N3 | 178.8 (5) |
N2—N1—C1—C8 | −0.7 (8) | C3—C2—C7—C6 | −2.1 (8) |
N1—N2—C11—C12 | 178.2 (5) | C2—C3—C4—C5 | 0.6 (10) |
N1—N2—C11—C16 | −2.2 (8) | C3—C4—C5—C6 | −0.3 (11) |
C8—N3—C7—C2 | 2.2 (6) | C4—C5—C6—C7 | −1.2 (10) |
C8—N3—C7—C6 | −176.7 (5) | C5—C6—C7—N3 | −178.8 (5) |
C9—N3—C7—C2 | −172.7 (5) | C5—C6—C7—C2 | 2.4 (8) |
C9—N3—C7—C6 | 8.4 (8) | N2—C11—C12—F1 | −0.5 (7) |
C7—N3—C8—O2 | 179.4 (5) | N2—C11—C12—C13 | −179.4 (5) |
C7—N3—C8—C1 | −2.2 (5) | C16—C11—C12—F1 | 179.8 (4) |
C9—N3—C8—O2 | −5.9 (9) | C16—C11—C12—C13 | 0.9 (8) |
C9—N3—C8—C1 | 172.6 (5) | N2—C11—C16—F4 | −0.6 (8) |
C7—N3—C9—O1 | −3.7 (9) | N2—C11—C16—C15 | 180.0 (5) |
C7—N3—C9—C10 | 176.2 (5) | C12—C11—C16—F4 | 179.1 (5) |
C8—N3—C9—O1 | −177.7 (5) | C12—C11—C16—C15 | −0.4 (8) |
C8—N3—C9—C10 | 2.3 (8) | F1—C12—C13—F2 | −1.6 (8) |
N1—C1—C2—C3 | 0.5 (10) | F1—C12—C13—C14 | −179.1 (5) |
N1—C1—C2—C7 | −179.4 (5) | C11—C12—C13—F2 | 177.3 (5) |
C8—C1—C2—C3 | 179.8 (6) | C11—C12—C13—C14 | −0.2 (9) |
C8—C1—C2—C7 | 0.0 (6) | F2—C13—C14—C15 | −178.4 (5) |
N1—C1—C8—O2 | −0.8 (9) | C12—C13—C14—C15 | −0.9 (9) |
N1—C1—C8—N3 | −179.3 (5) | C13—C14—C15—F3 | −178.6 (5) |
C2—C1—C8—O2 | 179.9 (5) | C13—C14—C15—C16 | 1.5 (9) |
C2—C1—C8—N3 | 1.4 (6) | F3—C15—C16—F4 | −0.2 (8) |
C1—C2—C3—C4 | −179.3 (6) | F3—C15—C16—C11 | 179.3 (5) |
C7—C2—C3—C4 | 0.6 (9) | C14—C15—C16—F4 | 179.7 (5) |
C1—C2—C7—N3 | −1.3 (6) | C14—C15—C16—C11 | −0.9 (9) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O2 | 0.86 | 1.99 | 2.694 (5) | 139 |
N2—H2···F1 | 0.86 | 2.29 | 2.658 (5) | 106 |
C6—H6···O1 | 0.93 | 2.33 | 2.857 (8) | 116 |
C14—H14···O1i | 0.93 | 2.32 | 3.217 (7) | 163 |
Symmetry code: (i) x+1, y−2, z. |
Experimental details
Crystal data | |
Chemical formula | C16H9F4N3O2 |
Mr | 351.26 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 296 |
a, b, c (Å) | 9.8993 (19), 4.7740 (6), 16.066 (3) |
β (°) | 104.807 (8) |
V (Å3) | 734.0 (2) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.14 |
Crystal size (mm) | 0.32 × 0.24 × 0.22 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.942, 0.952 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6095, 1462, 749 |
Rint | 0.087 |
(sin θ/λ)max (Å−1) | 0.600 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.046, 0.080, 0.96 |
No. of reflections | 1462 |
No. of parameters | 227 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.14, −0.18 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and PLATON (Spek, 2009), WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···O2 | 0.86 | 1.99 | 2.694 (5) | 139 |
N2—H2···F1 | 0.86 | 2.29 | 2.658 (5) | 106 |
C6—H6···O1 | 0.93 | 2.33 | 2.857 (8) | 116 |
C14—H14···O1i | 0.93 | 2.32 | 3.217 (7) | 163 |
Symmetry code: (i) x+1, y−2, z. |
Acknowledgements
MA gratefully acknowledges the Higher Education Commission (HEC), Islamabad, Pakistan, for providing him with a Scholarship under the Indigenous PhD Program and also for partial funding of this research work.
References
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In continuation of our previous work on the synthesis of isatin derivatives having physiological properties (Pervez et al., 2007, 2008, 2010a, 2010b), we report herein the synthesis and crystal structure of the title compound (I), (Fig. 1).
The crystal structure of N-(2-chloropyrid-4-yl)-N'-(2,3,5,6-tetrafluorophenyl)urea (Abad et al., 2006) has been published which contains the same flouro substituted phenyl group as in (I).
In (I), the 2-oxoindolin-3-hydrazono group A (N3/C1–C8/O2/N1/N2) and tetrafluorophenyl B (C11—C16/F1–F4) are planar with r. m. s. deviations of 0.0197 and 0.0121 Å, respectively. The dihedral angle between A/B is 4.10 (14)°. The acetyl moiety (O1/C9/C10) is oriented at 6.21 (83)° with its parent group A. One S(5) ring motif (Bernstein et al., 1995) is formed due to intramolecular H-bonding of N—H···F type, two S(6) ring motifs due to N—H···O and C—H···O interactions (Table 1, Fig. 1) are formed. The molecules are stabilized in the form of one dimensional polymeric chains extending along the a axis (Fig. 2).