organic compounds
A correction has been published for this article. To view the correction, click here.
N′-[(E)-(1-Methyl-1H-pyrrol-2-yl)methylidene]pyridine-4-carbohydrazide
aDepartment of Chemistry, Bahauddin Zakariya University, Multan 60800, Pakistan, bDepartment of Physics, University of Sargodha, Sargodha, Pakistan, and cBahauddin Zakariya University, Department of Chemistry, Multan 60800, Pakistan
*Correspondence e-mail: dmntahir_uos@yahoo.com
In the title compound, C12H12N4O, the pyridine and pyrrole rings are inclined at an angle of 29.22 (8)° and an intramolecular C—H⋯N interaction geneates an S(6) ring. In the crystal, molecules are linked by N—H⋯N hydrogen bonds, forming (010) C(7) chains. The chains are cross-linked by weak C—H⋯O interactions, which generate R22(18) ring motifs within an infinite sheet. Finally, two C—H⋯π interactions are present, where the C—H groups are from the pyridine ring and π is the pyrrole ring.
Related literature
For background information on et al.,(2009a,b); Hussain et al. (2010) For graph-set notation, see: Bernstein et al. (1995).
containing heterocyclic rings and for related structures, see: ShafiqExperimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON.
Supporting information
10.1107/S1600536810025341/hb5530sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810025341/hb5530Isup2.hkl
To a hot stirred solution of isoniazid (1.37 g, 0.01 mole) in ethanol 15 ml was added N-methylpyrrol-2-carboxaldehyde (1.1 ml, 0.01 mol). The resultant mixture was then heated under reflux. The reaction was monitored through TLC. After an hour, the precipitate were formed. The reaction mixture was further heated for 30 min. The resultant crude material was recrystalized in 1,4-dioxane:ethanol (1:4) to affoard red prisms of (I).
The H-atoms were positioned geometrically (N–H = 0.86 Å, `C–H = 0.93–0.96 Å) and refined as riding with Uiso(H) = xUeq(C, N), where x = 1.5 for methyl and x = 1.2 for all other H-atoms.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).Fig. 1. View of (I) with displacement ellipsoids drawn at the 50% probability level. H-atoms are shown by small circles of arbitrary radius. | |
Fig. 2. The partial packing of (I), which shows that molecules form infinite one dimensional polymeric chains extending along b axis. | |
Fig. 3. The partial packing (PLATON; Spek, 2009) which shows that molecules form R22(18) ring motifs in the infinite polymeric chains. |
C12H12N4O | F(000) = 480 |
Mr = 228.26 | Dx = 1.326 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2yn | Cell parameters from 1770 reflections |
a = 8.2134 (3) Å | θ = 2.6–28.4° |
b = 10.6740 (4) Å | µ = 0.09 mm−1 |
c = 13.1332 (4) Å | T = 296 K |
β = 96.938 (2)° | Prism, red |
V = 1142.95 (7) Å3 | 0.24 × 0.18 × 0.15 mm |
Z = 4 |
Bruker Kappa APEXII CCD diffractometer | 2803 independent reflections |
Radiation source: fine-focus sealed tube | 2023 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.029 |
Detector resolution: 7.50 pixels mm-1 | θmax = 28.3°, θmin = 2.5° |
ω scans | h = −10→10 |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | k = −14→14 |
Tmin = 0.980, Tmax = 0.985 | l = −17→17 |
12030 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0618P)2 + 0.235P] where P = (Fo2 + 2Fc2)/3 |
2803 reflections | (Δ/σ)max < 0.001 |
155 parameters | Δρmax = 0.28 e Å−3 |
0 restraints | Δρmin = −0.21 e Å−3 |
C12H12N4O | V = 1142.95 (7) Å3 |
Mr = 228.26 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 8.2134 (3) Å | µ = 0.09 mm−1 |
b = 10.6740 (4) Å | T = 296 K |
c = 13.1332 (4) Å | 0.24 × 0.18 × 0.15 mm |
β = 96.938 (2)° |
Bruker Kappa APEXII CCD diffractometer | 2803 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 2023 reflections with I > 2σ(I) |
Tmin = 0.980, Tmax = 0.985 | Rint = 0.029 |
12030 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.127 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.28 e Å−3 |
2803 reflections | Δρmin = −0.21 e Å−3 |
155 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.68517 (16) | 0.25900 (11) | 0.46989 (10) | 0.0596 (4) | |
N1 | 0.25031 (16) | 0.01556 (12) | 0.25463 (10) | 0.0424 (4) | |
N2 | 0.55170 (15) | 0.41010 (11) | 0.37015 (10) | 0.0388 (4) | |
N3 | 0.65784 (16) | 0.50489 (12) | 0.40795 (10) | 0.0417 (4) | |
N4 | 0.85194 (16) | 0.74061 (12) | 0.46127 (10) | 0.0411 (4) | |
C1 | 0.46019 (16) | 0.19827 (12) | 0.34909 (10) | 0.0315 (4) | |
C2 | 0.40449 (19) | 0.10059 (13) | 0.40461 (11) | 0.0374 (4) | |
C3 | 0.30152 (19) | 0.01259 (14) | 0.35500 (12) | 0.0414 (5) | |
C4 | 0.3056 (2) | 0.11012 (14) | 0.20128 (11) | 0.0421 (5) | |
C5 | 0.40918 (19) | 0.20229 (14) | 0.24441 (11) | 0.0378 (4) | |
C6 | 0.57736 (18) | 0.29160 (14) | 0.40312 (11) | 0.0371 (4) | |
C7 | 0.62947 (19) | 0.61063 (14) | 0.36395 (12) | 0.0416 (5) | |
C8 | 0.72195 (19) | 0.72388 (14) | 0.38651 (12) | 0.0404 (5) | |
C9 | 0.6991 (2) | 0.83500 (15) | 0.33312 (13) | 0.0497 (5) | |
C10 | 0.8163 (2) | 0.92006 (16) | 0.37628 (13) | 0.0539 (6) | |
C11 | 0.9081 (2) | 0.85957 (15) | 0.45424 (13) | 0.0496 (6) | |
C12 | 0.9127 (2) | 0.65484 (17) | 0.54194 (14) | 0.0574 (6) | |
H2 | 0.46924 | 0.42717 | 0.32551 | 0.0466* | |
H2A | 0.43635 | 0.09445 | 0.47482 | 0.0449* | |
H3 | 0.26551 | −0.05268 | 0.39352 | 0.0497* | |
H4 | 0.27213 | 0.11375 | 0.13112 | 0.0505* | |
H5 | 0.44438 | 0.26614 | 0.20412 | 0.0454* | |
H7 | 0.54104 | 0.61488 | 0.31268 | 0.0500* | |
H9 | 0.61937 | 0.85044 | 0.27801 | 0.0597* | |
H10 | 0.82924 | 1.00246 | 0.35569 | 0.0646* | |
H11 | 0.99575 | 0.89429 | 0.49628 | 0.0595* | |
H12A | 0.86108 | 0.67234 | 0.60217 | 0.0860* | |
H12B | 1.02928 | 0.66469 | 0.55737 | 0.0860* | |
H12C | 0.88828 | 0.57043 | 0.51995 | 0.0860* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0566 (8) | 0.0471 (7) | 0.0666 (8) | −0.0071 (6) | −0.0275 (6) | 0.0054 (6) |
N1 | 0.0438 (8) | 0.0334 (7) | 0.0475 (7) | −0.0070 (6) | −0.0048 (5) | −0.0019 (5) |
N2 | 0.0359 (7) | 0.0296 (6) | 0.0480 (7) | −0.0057 (5) | −0.0070 (5) | −0.0040 (5) |
N3 | 0.0389 (7) | 0.0336 (7) | 0.0511 (7) | −0.0081 (5) | −0.0010 (5) | −0.0087 (5) |
N4 | 0.0427 (7) | 0.0335 (7) | 0.0474 (7) | −0.0083 (5) | 0.0062 (6) | −0.0074 (5) |
C1 | 0.0297 (7) | 0.0266 (7) | 0.0374 (7) | 0.0006 (5) | 0.0003 (5) | −0.0018 (5) |
C2 | 0.0437 (8) | 0.0331 (8) | 0.0340 (7) | −0.0001 (6) | −0.0012 (6) | 0.0025 (6) |
C3 | 0.0458 (9) | 0.0331 (8) | 0.0449 (8) | −0.0071 (7) | 0.0035 (6) | 0.0052 (6) |
C4 | 0.0509 (9) | 0.0385 (8) | 0.0341 (7) | −0.0045 (7) | −0.0061 (6) | −0.0011 (6) |
C5 | 0.0453 (9) | 0.0318 (7) | 0.0359 (7) | −0.0047 (6) | 0.0030 (6) | 0.0032 (6) |
C6 | 0.0348 (8) | 0.0343 (8) | 0.0406 (7) | −0.0037 (6) | −0.0022 (6) | −0.0022 (6) |
C7 | 0.0380 (8) | 0.0344 (8) | 0.0509 (9) | −0.0047 (7) | −0.0012 (7) | −0.0074 (7) |
C8 | 0.0396 (8) | 0.0351 (8) | 0.0470 (8) | −0.0051 (6) | 0.0069 (7) | −0.0087 (6) |
C9 | 0.0580 (10) | 0.0381 (9) | 0.0529 (9) | −0.0047 (8) | 0.0064 (8) | −0.0029 (7) |
C10 | 0.0729 (12) | 0.0331 (8) | 0.0580 (10) | −0.0118 (8) | 0.0178 (9) | −0.0040 (7) |
C11 | 0.0560 (10) | 0.0380 (9) | 0.0570 (10) | −0.0198 (8) | 0.0162 (8) | −0.0155 (8) |
C12 | 0.0538 (11) | 0.0461 (10) | 0.0680 (11) | −0.0058 (8) | −0.0098 (8) | 0.0025 (9) |
O1—C6 | 1.219 (2) | C7—C8 | 1.439 (2) |
N1—C3 | 1.335 (2) | C8—C9 | 1.379 (2) |
N1—C4 | 1.339 (2) | C9—C10 | 1.393 (2) |
N2—N3 | 1.3877 (18) | C10—C11 | 1.359 (2) |
N2—C6 | 1.3453 (19) | C2—H2A | 0.9300 |
N3—C7 | 1.277 (2) | C3—H3 | 0.9300 |
N4—C8 | 1.372 (2) | C4—H4 | 0.9300 |
N4—C11 | 1.358 (2) | C5—H5 | 0.9300 |
N4—C12 | 1.443 (2) | C7—H7 | 0.9300 |
N2—H2 | 0.8600 | C9—H9 | 0.9300 |
C1—C2 | 1.3815 (19) | C10—H10 | 0.9300 |
C1—C5 | 1.3886 (19) | C11—H11 | 0.9300 |
C1—C6 | 1.502 (2) | C12—H12A | 0.9600 |
C2—C3 | 1.374 (2) | C12—H12B | 0.9600 |
C4—C5 | 1.377 (2) | C12—H12C | 0.9600 |
C3—N1—C4 | 116.64 (13) | N4—C11—C10 | 109.47 (15) |
N3—N2—C6 | 120.21 (12) | C1—C2—H2A | 120.00 |
N2—N3—C7 | 114.22 (13) | C3—C2—H2A | 120.00 |
C8—N4—C11 | 108.33 (13) | N1—C3—H3 | 118.00 |
C8—N4—C12 | 127.81 (13) | C2—C3—H3 | 118.00 |
C11—N4—C12 | 123.58 (14) | N1—C4—H4 | 118.00 |
C6—N2—H2 | 120.00 | C5—C4—H4 | 118.00 |
N3—N2—H2 | 120.00 | C1—C5—H5 | 121.00 |
C2—C1—C6 | 119.03 (12) | C4—C5—H5 | 121.00 |
C2—C1—C5 | 117.80 (13) | N3—C7—H7 | 117.00 |
C5—C1—C6 | 123.13 (12) | C8—C7—H7 | 117.00 |
C1—C2—C3 | 119.32 (13) | C8—C9—H9 | 126.00 |
N1—C3—C2 | 123.67 (14) | C10—C9—H9 | 126.00 |
N1—C4—C5 | 123.72 (14) | C9—C10—H10 | 127.00 |
C1—C5—C4 | 118.86 (13) | C11—C10—H10 | 127.00 |
N2—C6—C1 | 113.89 (12) | N4—C11—H11 | 125.00 |
O1—C6—N2 | 124.87 (14) | C10—C11—H11 | 125.00 |
O1—C6—C1 | 121.24 (13) | N4—C12—H12A | 109.00 |
N3—C7—C8 | 125.91 (15) | N4—C12—H12B | 109.00 |
N4—C8—C9 | 107.35 (13) | N4—C12—H12C | 109.00 |
C7—C8—C9 | 125.57 (15) | H12A—C12—H12B | 109.00 |
N4—C8—C7 | 127.04 (14) | H12A—C12—H12C | 109.00 |
C8—C9—C10 | 107.99 (15) | H12B—C12—H12C | 109.00 |
C9—C10—C11 | 106.87 (15) | ||
C4—N1—C3—C2 | 0.6 (2) | C2—C1—C5—C4 | 0.4 (2) |
C3—N1—C4—C5 | −0.5 (2) | C6—C1—C5—C4 | 177.90 (14) |
C6—N2—N3—C7 | 173.81 (14) | C2—C1—C6—O1 | 38.1 (2) |
N3—N2—C6—O1 | 4.1 (2) | C2—C1—C6—N2 | −142.47 (14) |
N3—N2—C6—C1 | −175.38 (12) | C5—C1—C6—O1 | −139.38 (16) |
N2—N3—C7—C8 | −178.82 (14) | C5—C1—C6—N2 | 40.08 (19) |
C11—N4—C8—C7 | 177.64 (15) | C1—C2—C3—N1 | −0.2 (2) |
C11—N4—C8—C9 | 0.04 (17) | N1—C4—C5—C1 | 0.0 (2) |
C12—N4—C8—C7 | −8.4 (3) | N3—C7—C8—N4 | −2.9 (3) |
C12—N4—C8—C9 | 174.00 (15) | N3—C7—C8—C9 | 174.33 (16) |
C8—N4—C11—C10 | 0.12 (19) | N4—C8—C9—C10 | −0.18 (18) |
C12—N4—C11—C10 | −174.15 (15) | C7—C8—C9—C10 | −177.82 (15) |
C5—C1—C2—C3 | −0.3 (2) | C8—C9—C10—C11 | 0.25 (19) |
C6—C1—C2—C3 | −177.89 (14) | C9—C10—C11—N4 | −0.23 (19) |
Cg1 is the centroid of the C8—C11/N4 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···N1i | 0.86 | 2.19 | 3.0205 (18) | 163 |
C4—H4···O1ii | 0.93 | 2.54 | 3.3821 (19) | 150 |
C12—H12B···O1iii | 0.96 | 2.55 | 3.450 (2) | 156 |
C12—H12C···N3 | 0.96 | 2.36 | 3.025 (2) | 126 |
C2—H2A···Cg1iv | 0.93 | 2.83 | 3.3258 (16) | 114 |
C5—H5···Cg1v | 0.93 | 2.71 | 3.4669 (17) | 139 |
Symmetry codes: (i) −x+1/2, y+1/2, −z+1/2; (ii) x−1/2, −y+1/2, z−1/2; (iii) −x+2, −y+1, −z+1; (iv) −x+1, −y+1, −z+1; (v) −x+3/2, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C12H12N4O |
Mr | 228.26 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 296 |
a, b, c (Å) | 8.2134 (3), 10.6740 (4), 13.1332 (4) |
β (°) | 96.938 (2) |
V (Å3) | 1142.95 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.24 × 0.18 × 0.15 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.980, 0.985 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 12030, 2803, 2023 |
Rint | 0.029 |
(sin θ/λ)max (Å−1) | 0.666 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.127, 1.04 |
No. of reflections | 2803 |
No. of parameters | 155 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.28, −0.21 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 for Windows (Farrugia, 1997) and PLATON (Spek, 2009), WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
Cg1 is the centroid of the C8—C11/N4 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2—H2···N1i | 0.86 | 2.19 | 3.0205 (18) | 163 |
C4—H4···O1ii | 0.93 | 2.54 | 3.3821 (19) | 150 |
C12—H12B···O1iii | 0.96 | 2.55 | 3.450 (2) | 156 |
C12—H12C···N3 | 0.96 | 2.36 | 3.025 (2) | 126 |
C2—H2A···Cg1iv | 0.93 | 2.83 | 3.3258 (16) | 114 |
C5—H5···Cg1v | 0.93 | 2.71 | 3.4669 (17) | 139 |
Symmetry codes: (i) −x+1/2, y+1/2, −z+1/2; (ii) x−1/2, −y+1/2, z−1/2; (iii) −x+2, −y+1, −z+1; (iv) −x+1, −y+1, −z+1; (v) −x+3/2, y−1/2, −z+1/2. |
Acknowledgements
The authors acknowledge the provision of funds for the purchase of diffractometer and encouragement by Dr Muhammad Akram Chaudhary, Vice Chancellor, University of Sargodha, Pakistan.
References
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Bruker (2005). SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Bruker (2009). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Hussain, A., Shafiq, Z., Tahir, M. N. & Yaqub, M. (2010). Acta. Cryst. E66, o1880. Web of Science CSD CrossRef IUCr Journals Google Scholar
Shafiq, Z., Yaqub, M., Tahir, M. N., Hussain, A. & Iqbal, M. S. (2009a). Acta Cryst. E65, o2496. Web of Science CSD CrossRef IUCr Journals Google Scholar
Shafiq, Z., Yaqub, M., Tahir, M. N., Hussain, A. & Iqbal, M. S. (2009b). Acta Cryst. E65, o2899. Web of Science CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
We have reported crystal structures of Schiff bases with N-containing aromatic ring (Shafiq et al., 2009a, 2009b), (Hussain et al., 2010) and as a part of this project, we report herein the structure and synthesis of the title compound (I, Fig. 1).
In (I) the pyridine ring A (C1–C5/N1), the central moiety B (O1/C6/N2/N3/C7) and the pyrrol moiety C (C8—C11/N4/C12) are planar with r. m. s. deviations of 0.0345, 0.0285 and 0.0276 Å, respectively. The dihedral angle between A/B, A/C and B/C is 38.32 (8)°, 29.22 (8)° and 9.44 (13)°, respectively. In title molecule, there exist intra as well inter-molecular H-bondings (Table 1). The molecules form infinite one dimensional polymeric chains extending along the b axis (Fig. 2), if only strong H-bondings are considered. If the strong as well as weak H-bondings are considered then the molecules form two-dimensional polymeric chains with R22(18) (Bernstein et al., 1995) ring motifs (Fig. 3). The C—H···π interactions (Table 1) also play important role in stabilizing the molecules.