organic compounds
Ethyl 1-(2-hydroxyethyl)-2-phenyl-1H-benzimidazole-5-carboxylate
aKuliyyah of Science, International Islamic University Malaysia, Jalan Sultan Ahmad Shah, Bandar Indera Mahkota, 25200 Kuantan, Pahang, Malaysia, bSchool of Pharmaceutical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
There are two molecules in the 18H18N2O3. In each one, the benzimidazole ring system is essentially planar, with maximum deviations of 0.027 (1) and 0.032 (1)Å, and makes dihedral angles of 38.64 (6) and 41.48 (6)°, respectively, with the attached benzene rings. An intramolecular C—H⋯O hydrogen bond is observed in each molecule. The two independent molecules are connected into a dimer by two intermolecular O—H⋯N hydrogen bonds. In the crystal, molecules form a two-dimensional layers parallel to (012) via weak intermolecular C—H⋯O hydrogen bonds. In addition, weak π-π stacking interactions are observed with centroid–centroid distances of 3.5244 (12) and 3.6189 (12) Å.
of the title compound, CRelated literature
For the applications of benzimidazole and its derivatives in the pharmaceutical and biological fields, see: Horton et al. (2003). These heterocycles can serve as molecular scaffolds with versatile binding properties via modifications of their functional groups, see: DeSimone et al. (2004). For the biological activity of benzimidazole derivatives, see: Gowda et al. (2009); Tunçbilek et al. (2009); Achar et al. (2010). For related structures, see: Arumugam et al. (2010). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536810023639/lh5069sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810023639/lh5069Isup2.hkl
The title compound was synthesised by the addition of sodium sulfite adduct of benzaldehyde (562 mg, 2.67 mmol) to a mixture of ethyl 3-amino-4-(2-hydroxylethylamino) benzoate (300 mg, 1.33 mmol) in 0.5 mL of DMF. Subsequently, the mixture was irradiated at 403K in a microwave reactor for 2 min. After the reaction, the mixture was diluted with 30 mL of EtOAc and washed with 20 mL of H2O. The organic layer was collected, dried over Na2SO4 and the solvent was evaporated under pressure to afford the crude product. The product was recrystallised with hot EtOAc which was slowly evaporated to give a single block of clear crystal.
The H atoms attached to O1A and O1B were located in a difference map and refined isotropically. The remaining H atoms were positioned geometrically [C-H = 0.93, 0.96 or 0.97 Å] and were refined using a riding model, with Uiso(H) = xUeq(C), where x = 1.5 for methyl H and 1.2 for all other H atoms. A rotating group model was used for the methyl groups.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure, showing 50% probability displacement ellipsoids and the atom-numbering scheme. Hydrogen atoms are shown as spheres of arbitrary radius. | |
Fig. 2. The crystal packing of (I) viewed along the a axis. Dashed lines indicate hydrogen bonds. H atoms not involved in the hydrogen bond interactions have been omitted for clarity. |
C18H18N2O3 | Z = 4 |
Mr = 310.34 | F(000) = 656 |
Triclinic, P1 | Dx = 1.334 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.997 (2) Å | Cell parameters from 6508 reflections |
b = 12.988 (3) Å | θ = 2.6–31.1° |
c = 15.030 (3) Å | µ = 0.09 mm−1 |
α = 103.764 (6)° | T = 100 K |
β = 107.202 (6)° | Block, colourless |
γ = 102.929 (6)° | 0.34 × 0.20 × 0.11 mm |
V = 1545.5 (6) Å3 |
Bruker APEXII DUO CCD area-detector diffractometer | 9838 independent reflections |
Radiation source: fine-focus sealed tube | 6952 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.051 |
ϕ and ω scans | θmax = 31.1°, θmin = 1.5° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −13→13 |
Tmin = 0.970, Tmax = 0.990 | k = −18→18 |
34907 measured reflections | l = −21→21 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.051 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.167 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0944P)2 + 0.2365P] where P = (Fo2 + 2Fc2)/3 |
9838 reflections | (Δ/σ)max = 0.001 |
425 parameters | Δρmax = 0.41 e Å−3 |
0 restraints | Δρmin = −0.40 e Å−3 |
C18H18N2O3 | γ = 102.929 (6)° |
Mr = 310.34 | V = 1545.5 (6) Å3 |
Triclinic, P1 | Z = 4 |
a = 8.997 (2) Å | Mo Kα radiation |
b = 12.988 (3) Å | µ = 0.09 mm−1 |
c = 15.030 (3) Å | T = 100 K |
α = 103.764 (6)° | 0.34 × 0.20 × 0.11 mm |
β = 107.202 (6)° |
Bruker APEXII DUO CCD area-detector diffractometer | 9838 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 6952 reflections with I > 2σ(I) |
Tmin = 0.970, Tmax = 0.990 | Rint = 0.051 |
34907 measured reflections |
R[F2 > 2σ(F2)] = 0.051 | 0 restraints |
wR(F2) = 0.167 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.41 e Å−3 |
9838 reflections | Δρmin = −0.40 e Å−3 |
425 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1A | 1.15213 (13) | 0.95597 (9) | 0.66787 (8) | 0.0189 (2) | |
O2A | 0.54072 (14) | 1.15419 (10) | 0.96176 (9) | 0.0311 (3) | |
O3A | 0.78042 (13) | 1.28774 (9) | 1.05882 (8) | 0.0235 (2) | |
N1A | 1.02010 (14) | 0.92733 (10) | 0.82790 (8) | 0.0147 (2) | |
N2A | 0.74895 (14) | 0.84883 (10) | 0.78666 (9) | 0.0155 (2) | |
C1A | 0.96687 (16) | 1.00752 (11) | 0.87590 (10) | 0.0148 (2) | |
C2A | 1.05169 (17) | 1.11622 (12) | 0.94178 (10) | 0.0171 (3) | |
H2AA | 1.1641 | 1.1480 | 0.9596 | 0.020* | |
C3A | 0.95920 (17) | 1.17389 (12) | 0.97904 (10) | 0.0171 (3) | |
H3AA | 1.0110 | 1.2462 | 1.0233 | 0.021* | |
C4A | 0.78835 (17) | 1.12585 (12) | 0.95159 (10) | 0.0160 (3) | |
C5A | 0.70664 (17) | 1.01725 (12) | 0.88665 (10) | 0.0161 (3) | |
H5AA | 0.5943 | 0.9853 | 0.8689 | 0.019* | |
C6A | 0.79750 (16) | 0.95790 (12) | 0.84909 (10) | 0.0150 (3) | |
C7A | 0.88525 (16) | 0.83316 (11) | 0.77649 (10) | 0.0149 (3) | |
C8A | 0.88701 (16) | 0.72261 (11) | 0.72397 (10) | 0.0161 (3) | |
C9A | 0.78407 (17) | 0.62979 (12) | 0.73233 (11) | 0.0192 (3) | |
H9AA | 0.7178 | 0.6404 | 0.7686 | 0.023* | |
C10A | 0.78010 (19) | 0.52256 (13) | 0.68722 (12) | 0.0219 (3) | |
H10A | 0.7113 | 0.4616 | 0.6931 | 0.026* | |
C11A | 0.87878 (19) | 0.50601 (13) | 0.63319 (12) | 0.0234 (3) | |
H11A | 0.8785 | 0.4342 | 0.6043 | 0.028* | |
C12A | 0.97797 (19) | 0.59712 (13) | 0.62236 (12) | 0.0235 (3) | |
H12A | 1.0425 | 0.5858 | 0.5850 | 0.028* | |
C13A | 0.98171 (18) | 0.70472 (12) | 0.66663 (11) | 0.0195 (3) | |
H13A | 1.0474 | 0.7651 | 0.6582 | 0.023* | |
C14A | 1.19033 (16) | 0.94750 (12) | 0.83426 (10) | 0.0170 (3) | |
H14A | 1.2089 | 0.8763 | 0.8138 | 0.020* | |
H14B | 1.2633 | 0.9868 | 0.9023 | 0.020* | |
C15A | 1.23125 (17) | 1.01573 (12) | 0.77022 (10) | 0.0178 (3) | |
H15A | 1.1993 | 1.0824 | 0.7850 | 0.021* | |
H15B | 1.3490 | 1.0392 | 0.7867 | 0.021* | |
C16A | 0.68862 (19) | 1.18841 (12) | 0.98976 (11) | 0.0195 (3) | |
C17A | 0.6900 (2) | 1.35453 (14) | 1.09824 (13) | 0.0270 (3) | |
H17A | 0.6001 | 1.3559 | 1.0441 | 0.032* | |
H17B | 0.7622 | 1.4307 | 1.1334 | 0.032* | |
C18A | 0.6227 (2) | 1.30985 (16) | 1.16688 (13) | 0.0309 (4) | |
H18A | 0.5706 | 1.3591 | 1.1944 | 0.046* | |
H18B | 0.7105 | 1.3051 | 1.2190 | 0.046* | |
H18C | 0.5438 | 1.2369 | 1.1310 | 0.046* | |
O1B | 0.44589 (13) | 0.70587 (9) | 0.63176 (8) | 0.0198 (2) | |
O2B | 0.98042 (13) | 1.37266 (9) | 0.85047 (9) | 0.0261 (2) | |
O3B | 0.72718 (13) | 1.37041 (9) | 0.84618 (8) | 0.0218 (2) | |
N1B | 0.56260 (14) | 0.88812 (10) | 0.55835 (8) | 0.0146 (2) | |
N2B | 0.83526 (14) | 0.96642 (10) | 0.60695 (9) | 0.0159 (2) | |
C1B | 0.60025 (16) | 0.99572 (11) | 0.61970 (10) | 0.0144 (2) | |
C2B | 0.50052 (16) | 1.05442 (12) | 0.64814 (10) | 0.0163 (3) | |
H2BA | 0.3873 | 1.0224 | 0.6255 | 0.020* | |
C3B | 0.57926 (17) | 1.16295 (12) | 0.71190 (10) | 0.0170 (3) | |
H3BA | 0.5174 | 1.2055 | 0.7320 | 0.020* | |
C4B | 0.75098 (17) | 1.21029 (11) | 0.74702 (10) | 0.0158 (3) | |
C5B | 0.84839 (16) | 1.15126 (11) | 0.71697 (10) | 0.0155 (3) | |
H5BA | 0.9618 | 1.1830 | 0.7404 | 0.019* | |
C6B | 0.77088 (16) | 1.04313 (11) | 0.65068 (10) | 0.0146 (2) | |
C7B | 0.70751 (16) | 0.87512 (11) | 0.55223 (10) | 0.0150 (3) | |
C8B | 0.72348 (17) | 0.77623 (12) | 0.48846 (10) | 0.0169 (3) | |
C9B | 0.83211 (19) | 0.79407 (13) | 0.43951 (12) | 0.0235 (3) | |
H9BA | 0.8894 | 0.8666 | 0.4467 | 0.028* | |
C10B | 0.8546 (2) | 0.70370 (15) | 0.38006 (13) | 0.0299 (4) | |
H10B | 0.9284 | 0.7160 | 0.3486 | 0.036* | |
C11B | 0.7677 (2) | 0.59535 (14) | 0.36748 (13) | 0.0270 (3) | |
H11B | 0.7813 | 0.5352 | 0.3264 | 0.032* | |
C12B | 0.66018 (19) | 0.57676 (13) | 0.41618 (12) | 0.0224 (3) | |
H12B | 0.6027 | 0.5040 | 0.4082 | 0.027* | |
C13B | 0.63813 (17) | 0.66645 (12) | 0.47681 (11) | 0.0187 (3) | |
H13B | 0.5666 | 0.6536 | 0.5097 | 0.022* | |
C14B | 0.39725 (16) | 0.80879 (12) | 0.51552 (10) | 0.0166 (3) | |
H14C | 0.3917 | 0.7454 | 0.4636 | 0.020* | |
H14D | 0.3204 | 0.8442 | 0.4864 | 0.020* | |
C15B | 0.34895 (17) | 0.76807 (12) | 0.59306 (11) | 0.0187 (3) | |
H15C | 0.3599 | 0.8320 | 0.6463 | 0.022* | |
H15D | 0.2347 | 0.7220 | 0.5639 | 0.022* | |
C16B | 0.83472 (18) | 1.32504 (12) | 0.81937 (10) | 0.0179 (3) | |
C17B | 0.7947 (2) | 1.48136 (13) | 0.91805 (12) | 0.0243 (3) | |
H17C | 0.8708 | 1.5301 | 0.9000 | 0.029* | |
H17D | 0.8527 | 1.4787 | 0.9827 | 0.029* | |
C18B | 0.6526 (2) | 1.52376 (16) | 0.91910 (15) | 0.0354 (4) | |
H18D | 0.6924 | 1.5977 | 0.9659 | 0.053* | |
H18E | 0.5786 | 1.4750 | 0.9374 | 0.053* | |
H18F | 0.5960 | 1.5256 | 0.8547 | 0.053* | |
H1OA | 1.061 (3) | 0.9613 (18) | 0.6519 (16) | 0.033 (6)* | |
H1OB | 0.551 (3) | 0.753 (2) | 0.6837 (18) | 0.048 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1A | 0.0133 (5) | 0.0260 (5) | 0.0181 (5) | 0.0069 (4) | 0.0064 (4) | 0.0070 (4) |
O2A | 0.0197 (5) | 0.0316 (6) | 0.0346 (7) | 0.0082 (5) | 0.0096 (5) | −0.0017 (5) |
O3A | 0.0230 (5) | 0.0193 (5) | 0.0255 (6) | 0.0058 (4) | 0.0114 (4) | 0.0006 (4) |
N1A | 0.0137 (5) | 0.0153 (5) | 0.0152 (5) | 0.0043 (4) | 0.0061 (4) | 0.0048 (4) |
N2A | 0.0133 (5) | 0.0161 (5) | 0.0162 (5) | 0.0036 (4) | 0.0058 (4) | 0.0045 (4) |
C1A | 0.0155 (6) | 0.0160 (6) | 0.0139 (6) | 0.0049 (5) | 0.0064 (5) | 0.0055 (5) |
C2A | 0.0146 (6) | 0.0178 (6) | 0.0168 (6) | 0.0031 (5) | 0.0047 (5) | 0.0056 (5) |
C3A | 0.0178 (6) | 0.0164 (6) | 0.0152 (6) | 0.0036 (5) | 0.0055 (5) | 0.0042 (5) |
C4A | 0.0169 (6) | 0.0176 (6) | 0.0142 (6) | 0.0058 (5) | 0.0059 (5) | 0.0056 (5) |
C5A | 0.0140 (6) | 0.0183 (6) | 0.0158 (6) | 0.0046 (5) | 0.0053 (5) | 0.0059 (5) |
C6A | 0.0148 (6) | 0.0162 (6) | 0.0135 (6) | 0.0041 (5) | 0.0048 (5) | 0.0051 (5) |
C7A | 0.0143 (6) | 0.0164 (6) | 0.0144 (6) | 0.0038 (5) | 0.0056 (5) | 0.0061 (5) |
C8A | 0.0141 (6) | 0.0163 (6) | 0.0166 (6) | 0.0051 (5) | 0.0038 (5) | 0.0052 (5) |
C9A | 0.0179 (6) | 0.0194 (7) | 0.0204 (7) | 0.0046 (5) | 0.0077 (5) | 0.0073 (5) |
C10A | 0.0207 (7) | 0.0168 (7) | 0.0262 (7) | 0.0038 (5) | 0.0072 (6) | 0.0076 (6) |
C11A | 0.0223 (7) | 0.0171 (7) | 0.0274 (8) | 0.0052 (6) | 0.0080 (6) | 0.0035 (6) |
C12A | 0.0230 (7) | 0.0211 (7) | 0.0277 (8) | 0.0072 (6) | 0.0137 (6) | 0.0044 (6) |
C13A | 0.0190 (6) | 0.0180 (7) | 0.0215 (7) | 0.0046 (5) | 0.0091 (6) | 0.0054 (5) |
C14A | 0.0131 (6) | 0.0204 (7) | 0.0187 (6) | 0.0060 (5) | 0.0068 (5) | 0.0068 (5) |
C15A | 0.0131 (6) | 0.0211 (7) | 0.0196 (7) | 0.0040 (5) | 0.0071 (5) | 0.0071 (5) |
C16A | 0.0227 (7) | 0.0199 (7) | 0.0163 (6) | 0.0079 (5) | 0.0077 (5) | 0.0049 (5) |
C17A | 0.0333 (8) | 0.0218 (7) | 0.0321 (8) | 0.0130 (6) | 0.0202 (7) | 0.0055 (6) |
C18A | 0.0329 (9) | 0.0348 (9) | 0.0279 (8) | 0.0157 (7) | 0.0129 (7) | 0.0084 (7) |
O1B | 0.0212 (5) | 0.0172 (5) | 0.0204 (5) | 0.0043 (4) | 0.0072 (4) | 0.0073 (4) |
O2B | 0.0185 (5) | 0.0217 (6) | 0.0302 (6) | 0.0023 (4) | 0.0064 (5) | 0.0019 (5) |
O3B | 0.0196 (5) | 0.0198 (5) | 0.0242 (5) | 0.0064 (4) | 0.0088 (4) | 0.0032 (4) |
N1B | 0.0121 (5) | 0.0158 (5) | 0.0157 (5) | 0.0033 (4) | 0.0054 (4) | 0.0057 (4) |
N2B | 0.0138 (5) | 0.0166 (6) | 0.0178 (6) | 0.0048 (4) | 0.0059 (4) | 0.0067 (4) |
C1B | 0.0130 (6) | 0.0158 (6) | 0.0145 (6) | 0.0033 (5) | 0.0046 (5) | 0.0066 (5) |
C2B | 0.0127 (6) | 0.0202 (7) | 0.0169 (6) | 0.0051 (5) | 0.0060 (5) | 0.0072 (5) |
C3B | 0.0160 (6) | 0.0194 (7) | 0.0177 (6) | 0.0065 (5) | 0.0077 (5) | 0.0071 (5) |
C4B | 0.0168 (6) | 0.0156 (6) | 0.0148 (6) | 0.0038 (5) | 0.0060 (5) | 0.0053 (5) |
C5B | 0.0131 (6) | 0.0171 (6) | 0.0163 (6) | 0.0036 (5) | 0.0046 (5) | 0.0073 (5) |
C6B | 0.0127 (6) | 0.0167 (6) | 0.0161 (6) | 0.0049 (5) | 0.0057 (5) | 0.0078 (5) |
C7B | 0.0133 (6) | 0.0172 (6) | 0.0163 (6) | 0.0051 (5) | 0.0055 (5) | 0.0080 (5) |
C8B | 0.0154 (6) | 0.0186 (7) | 0.0173 (6) | 0.0054 (5) | 0.0064 (5) | 0.0063 (5) |
C9B | 0.0247 (7) | 0.0223 (7) | 0.0304 (8) | 0.0085 (6) | 0.0165 (6) | 0.0118 (6) |
C10B | 0.0358 (9) | 0.0295 (8) | 0.0367 (9) | 0.0138 (7) | 0.0267 (8) | 0.0123 (7) |
C11B | 0.0291 (8) | 0.0244 (8) | 0.0288 (8) | 0.0112 (6) | 0.0143 (7) | 0.0038 (6) |
C12B | 0.0209 (7) | 0.0178 (7) | 0.0270 (8) | 0.0052 (5) | 0.0089 (6) | 0.0053 (6) |
C13B | 0.0170 (6) | 0.0190 (7) | 0.0212 (7) | 0.0055 (5) | 0.0081 (5) | 0.0073 (5) |
C14B | 0.0117 (6) | 0.0183 (6) | 0.0177 (6) | 0.0026 (5) | 0.0043 (5) | 0.0054 (5) |
C15B | 0.0160 (6) | 0.0189 (7) | 0.0224 (7) | 0.0032 (5) | 0.0099 (5) | 0.0074 (5) |
C16B | 0.0191 (6) | 0.0175 (6) | 0.0177 (6) | 0.0058 (5) | 0.0069 (5) | 0.0070 (5) |
C17B | 0.0266 (8) | 0.0190 (7) | 0.0251 (8) | 0.0071 (6) | 0.0107 (6) | 0.0022 (6) |
C18B | 0.0384 (10) | 0.0310 (9) | 0.0467 (11) | 0.0165 (8) | 0.0253 (9) | 0.0126 (8) |
O1A—C15A | 1.4186 (18) | O1B—C15B | 1.4109 (18) |
O1A—H1OA | 0.81 (2) | O1B—H1OB | 0.98 (3) |
O2A—C16A | 1.2085 (19) | O2B—C16B | 1.2069 (18) |
O3A—C16A | 1.3427 (18) | O3B—C16B | 1.3484 (18) |
O3A—C17A | 1.4564 (18) | O3B—C17B | 1.4463 (19) |
N1A—C7A | 1.3772 (18) | N1B—C7B | 1.3779 (17) |
N1A—C1A | 1.3801 (17) | N1B—C1B | 1.3815 (18) |
N1A—C14A | 1.4647 (18) | N1B—C14B | 1.4563 (17) |
N2A—C7A | 1.3328 (18) | N2B—C7B | 1.3306 (18) |
N2A—C6A | 1.3879 (18) | N2B—C6B | 1.3900 (18) |
C1A—C2A | 1.4007 (19) | C1B—C2B | 1.3953 (19) |
C1A—C6A | 1.4048 (19) | C1B—C6B | 1.4037 (18) |
C2A—C3A | 1.386 (2) | C2B—C3B | 1.384 (2) |
C2A—H2AA | 0.9300 | C2B—H2BA | 0.9300 |
C3A—C4A | 1.413 (2) | C3B—C4B | 1.408 (2) |
C3A—H3AA | 0.9300 | C3B—H3BA | 0.9300 |
C4A—C5A | 1.393 (2) | C4B—C5B | 1.3892 (19) |
C4A—C16A | 1.484 (2) | C4B—C16B | 1.488 (2) |
C5A—C6A | 1.3889 (19) | C5B—C6B | 1.3915 (19) |
C5A—H5AA | 0.9300 | C5B—H5BA | 0.9300 |
C7A—C8A | 1.471 (2) | C7B—C8B | 1.472 (2) |
C8A—C13A | 1.396 (2) | C8B—C9B | 1.398 (2) |
C8A—C9A | 1.4030 (19) | C8B—C13B | 1.402 (2) |
C9A—C10A | 1.384 (2) | C9B—C10B | 1.390 (2) |
C9A—H9AA | 0.9300 | C9B—H9BA | 0.9300 |
C10A—C11A | 1.387 (2) | C10B—C11B | 1.386 (2) |
C10A—H10A | 0.9300 | C10B—H10B | 0.9300 |
C11A—C12A | 1.389 (2) | C11B—C12B | 1.388 (2) |
C11A—H11A | 0.9300 | C11B—H11B | 0.9300 |
C12A—C13A | 1.386 (2) | C12B—C13B | 1.390 (2) |
C12A—H12A | 0.9300 | C12B—H12B | 0.9300 |
C13A—H13A | 0.9300 | C13B—H13B | 0.9300 |
C14A—C15A | 1.522 (2) | C14B—C15B | 1.5221 (19) |
C14A—H14A | 0.9700 | C14B—H14C | 0.9700 |
C14A—H14B | 0.9700 | C14B—H14D | 0.9700 |
C15A—H15A | 0.9700 | C15B—H15C | 0.9700 |
C15A—H15B | 0.9700 | C15B—H15D | 0.9700 |
C17A—C18A | 1.505 (2) | C17B—C18B | 1.504 (2) |
C17A—H17A | 0.9700 | C17B—H17C | 0.9700 |
C17A—H17B | 0.9700 | C17B—H17D | 0.9700 |
C18A—H18A | 0.9600 | C18B—H18D | 0.9600 |
C18A—H18B | 0.9600 | C18B—H18E | 0.9600 |
C18A—H18C | 0.9600 | C18B—H18F | 0.9600 |
C15A—O1A—H1OA | 106.6 (15) | C15B—O1B—H1OB | 112.7 (14) |
C16A—O3A—C17A | 115.62 (13) | C16B—O3B—C17B | 116.69 (12) |
C7A—N1A—C1A | 106.75 (11) | C7B—N1B—C1B | 106.88 (11) |
C7A—N1A—C14A | 130.19 (12) | C7B—N1B—C14B | 130.48 (12) |
C1A—N1A—C14A | 123.05 (12) | C1B—N1B—C14B | 122.60 (11) |
C7A—N2A—C6A | 105.31 (11) | C7B—N2B—C6B | 105.39 (11) |
N1A—C1A—C2A | 131.57 (13) | N1B—C1B—C2B | 131.25 (12) |
N1A—C1A—C6A | 105.94 (12) | N1B—C1B—C6B | 105.80 (12) |
C2A—C1A—C6A | 122.46 (13) | C2B—C1B—C6B | 122.93 (13) |
C3A—C2A—C1A | 116.44 (13) | C3B—C2B—C1B | 116.39 (13) |
C3A—C2A—H2AA | 121.8 | C3B—C2B—H2BA | 121.8 |
C1A—C2A—H2AA | 121.8 | C1B—C2B—H2BA | 121.8 |
C2A—C3A—C4A | 121.80 (13) | C2B—C3B—C4B | 121.44 (13) |
C2A—C3A—H3AA | 119.1 | C2B—C3B—H3BA | 119.3 |
C4A—C3A—H3AA | 119.1 | C4B—C3B—H3BA | 119.3 |
C5A—C4A—C3A | 120.83 (13) | C5B—C4B—C3B | 121.46 (13) |
C5A—C4A—C16A | 117.33 (13) | C5B—C4B—C16B | 117.66 (12) |
C3A—C4A—C16A | 121.83 (13) | C3B—C4B—C16B | 120.88 (13) |
C6A—C5A—C4A | 118.18 (13) | C4B—C5B—C6B | 117.88 (12) |
C6A—C5A—H5AA | 120.9 | C4B—C5B—H5BA | 121.1 |
C4A—C5A—H5AA | 120.9 | C6B—C5B—H5BA | 121.1 |
N2A—C6A—C5A | 130.04 (13) | N2B—C6B—C5B | 130.50 (12) |
N2A—C6A—C1A | 109.67 (12) | N2B—C6B—C1B | 109.69 (12) |
C5A—C6A—C1A | 120.28 (13) | C5B—C6B—C1B | 119.80 (12) |
N2A—C7A—N1A | 112.31 (12) | N2B—C7B—N1B | 112.22 (12) |
N2A—C7A—C8A | 121.48 (12) | N2B—C7B—C8B | 122.11 (12) |
N1A—C7A—C8A | 125.92 (12) | N1B—C7B—C8B | 125.54 (12) |
C13A—C8A—C9A | 118.79 (13) | C9B—C8B—C13B | 119.22 (13) |
C13A—C8A—C7A | 124.62 (13) | C9B—C8B—C7B | 117.73 (13) |
C9A—C8A—C7A | 116.59 (12) | C13B—C8B—C7B | 123.04 (12) |
C10A—C9A—C8A | 120.72 (14) | C10B—C9B—C8B | 120.14 (14) |
C10A—C9A—H9AA | 119.6 | C10B—C9B—H9BA | 119.9 |
C8A—C9A—H9AA | 119.6 | C8B—C9B—H9BA | 119.9 |
C9A—C10A—C11A | 119.98 (14) | C11B—C10B—C9B | 120.35 (15) |
C9A—C10A—H10A | 120.0 | C11B—C10B—H10B | 119.8 |
C11A—C10A—H10A | 120.0 | C9B—C10B—H10B | 119.8 |
C10A—C11A—C12A | 119.75 (14) | C10B—C11B—C12B | 119.94 (15) |
C10A—C11A—H11A | 120.1 | C10B—C11B—H11B | 120.0 |
C12A—C11A—H11A | 120.1 | C12B—C11B—H11B | 120.0 |
C13A—C12A—C11A | 120.63 (14) | C11B—C12B—C13B | 120.24 (14) |
C13A—C12A—H12A | 119.7 | C11B—C12B—H12B | 119.9 |
C11A—C12A—H12A | 119.7 | C13B—C12B—H12B | 119.9 |
C12A—C13A—C8A | 120.08 (13) | C12B—C13B—C8B | 120.10 (13) |
C12A—C13A—H13A | 120.0 | C12B—C13B—H13B | 120.0 |
C8A—C13A—H13A | 120.0 | C8B—C13B—H13B | 120.0 |
N1A—C14A—C15A | 112.25 (11) | N1B—C14B—C15B | 111.15 (11) |
N1A—C14A—H14A | 109.2 | N1B—C14B—H14C | 109.4 |
C15A—C14A—H14A | 109.2 | C15B—C14B—H14C | 109.4 |
N1A—C14A—H14B | 109.2 | N1B—C14B—H14D | 109.4 |
C15A—C14A—H14B | 109.2 | C15B—C14B—H14D | 109.4 |
H14A—C14A—H14B | 107.9 | H14C—C14B—H14D | 108.0 |
O1A—C15A—C14A | 113.10 (12) | O1B—C15B—C14B | 112.51 (11) |
O1A—C15A—H15A | 109.0 | O1B—C15B—H15C | 109.1 |
C14A—C15A—H15A | 109.0 | C14B—C15B—H15C | 109.1 |
O1A—C15A—H15B | 109.0 | O1B—C15B—H15D | 109.1 |
C14A—C15A—H15B | 109.0 | C14B—C15B—H15D | 109.1 |
H15A—C15A—H15B | 107.8 | H15C—C15B—H15D | 107.8 |
O2A—C16A—O3A | 123.39 (14) | O2B—C16B—O3B | 123.64 (14) |
O2A—C16A—C4A | 123.88 (14) | O2B—C16B—C4B | 124.81 (14) |
O3A—C16A—C4A | 112.73 (13) | O3B—C16B—C4B | 111.55 (12) |
O3A—C17A—C18A | 112.42 (14) | O3B—C17B—C18B | 106.85 (14) |
O3A—C17A—H17A | 109.1 | O3B—C17B—H17C | 110.4 |
C18A—C17A—H17A | 109.1 | C18B—C17B—H17C | 110.4 |
O3A—C17A—H17B | 109.1 | O3B—C17B—H17D | 110.4 |
C18A—C17A—H17B | 109.1 | C18B—C17B—H17D | 110.4 |
H17A—C17A—H17B | 107.9 | H17C—C17B—H17D | 108.6 |
C17A—C18A—H18A | 109.5 | C17B—C18B—H18D | 109.5 |
C17A—C18A—H18B | 109.5 | C17B—C18B—H18E | 109.5 |
H18A—C18A—H18B | 109.5 | H18D—C18B—H18E | 109.5 |
C17A—C18A—H18C | 109.5 | C17B—C18B—H18F | 109.5 |
H18A—C18A—H18C | 109.5 | H18D—C18B—H18F | 109.5 |
H18B—C18A—H18C | 109.5 | H18E—C18B—H18F | 109.5 |
C7A—N1A—C1A—C2A | 176.50 (14) | C7B—N1B—C1B—C2B | 177.03 (14) |
C14A—N1A—C1A—C2A | −4.2 (2) | C14B—N1B—C1B—C2B | −5.3 (2) |
C7A—N1A—C1A—C6A | −1.25 (14) | C7B—N1B—C1B—C6B | −1.51 (14) |
C14A—N1A—C1A—C6A | 178.06 (12) | C14B—N1B—C1B—C6B | 176.20 (11) |
N1A—C1A—C2A—C3A | −178.13 (13) | N1B—C1B—C2B—C3B | 179.89 (13) |
C6A—C1A—C2A—C3A | −0.7 (2) | C6B—C1B—C2B—C3B | −1.8 (2) |
C1A—C2A—C3A—C4A | −0.4 (2) | C1B—C2B—C3B—C4B | −1.0 (2) |
C2A—C3A—C4A—C5A | 1.0 (2) | C2B—C3B—C4B—C5B | 1.9 (2) |
C2A—C3A—C4A—C16A | −178.65 (13) | C2B—C3B—C4B—C16B | −176.95 (13) |
C3A—C4A—C5A—C6A | −0.5 (2) | C3B—C4B—C5B—C6B | 0.0 (2) |
C16A—C4A—C5A—C6A | 179.14 (12) | C16B—C4B—C5B—C6B | 178.85 (12) |
C7A—N2A—C6A—C5A | −178.09 (14) | C7B—N2B—C6B—C5B | 178.20 (14) |
C7A—N2A—C6A—C1A | 0.21 (15) | C7B—N2B—C6B—C1B | −0.70 (15) |
C4A—C5A—C6A—N2A | 177.63 (13) | C4B—C5B—C6B—N2B | 178.57 (13) |
C4A—C5A—C6A—C1A | −0.5 (2) | C4B—C5B—C6B—C1B | −2.63 (19) |
N1A—C1A—C6A—N2A | 0.67 (15) | N1B—C1B—C6B—N2B | 1.40 (14) |
C2A—C1A—C6A—N2A | −177.34 (12) | C2B—C1B—C6B—N2B | −177.30 (12) |
N1A—C1A—C6A—C5A | 179.17 (12) | N1B—C1B—C6B—C5B | −177.64 (12) |
C2A—C1A—C6A—C5A | 1.2 (2) | C2B—C1B—C6B—C5B | 3.7 (2) |
C6A—N2A—C7A—N1A | −1.05 (15) | C6B—N2B—C7B—N1B | −0.29 (15) |
C6A—N2A—C7A—C8A | 173.07 (12) | C6B—N2B—C7B—C8B | 175.92 (12) |
C1A—N1A—C7A—N2A | 1.49 (15) | C1B—N1B—C7B—N2B | 1.17 (15) |
C14A—N1A—C7A—N2A | −177.76 (12) | C14B—N1B—C7B—N2B | −176.30 (12) |
C1A—N1A—C7A—C8A | −172.31 (12) | C1B—N1B—C7B—C8B | −174.89 (12) |
C14A—N1A—C7A—C8A | 8.4 (2) | C14B—N1B—C7B—C8B | 7.6 (2) |
N2A—C7A—C8A—C13A | 145.39 (14) | N2B—C7B—C8B—C9B | −37.4 (2) |
N1A—C7A—C8A—C13A | −41.3 (2) | N1B—C7B—C8B—C9B | 138.34 (15) |
N2A—C7A—C8A—C9A | −33.94 (19) | N2B—C7B—C8B—C13B | 141.16 (14) |
N1A—C7A—C8A—C9A | 139.34 (14) | N1B—C7B—C8B—C13B | −43.1 (2) |
C13A—C8A—C9A—C10A | 2.0 (2) | C13B—C8B—C9B—C10B | 0.0 (2) |
C7A—C8A—C9A—C10A | −178.61 (13) | C7B—C8B—C9B—C10B | 178.61 (15) |
C8A—C9A—C10A—C11A | 0.1 (2) | C8B—C9B—C10B—C11B | 1.1 (3) |
C9A—C10A—C11A—C12A | −1.8 (2) | C9B—C10B—C11B—C12B | −1.4 (3) |
C10A—C11A—C12A—C13A | 1.3 (2) | C10B—C11B—C12B—C13B | 0.6 (3) |
C11A—C12A—C13A—C8A | 0.9 (2) | C11B—C12B—C13B—C8B | 0.5 (2) |
C9A—C8A—C13A—C12A | −2.5 (2) | C9B—C8B—C13B—C12B | −0.8 (2) |
C7A—C8A—C13A—C12A | 178.16 (14) | C7B—C8B—C13B—C12B | −179.33 (13) |
C7A—N1A—C14A—C15A | 102.15 (16) | C7B—N1B—C14B—C15B | 104.85 (16) |
C1A—N1A—C14A—C15A | −76.99 (16) | C1B—N1B—C14B—C15B | −72.28 (16) |
N1A—C14A—C15A—O1A | −69.79 (15) | N1B—C14B—C15B—O1B | −64.92 (15) |
C17A—O3A—C16A—O2A | −0.9 (2) | C17B—O3B—C16B—O2B | −1.5 (2) |
C17A—O3A—C16A—C4A | 178.92 (12) | C17B—O3B—C16B—C4B | 178.76 (12) |
C5A—C4A—C16A—O2A | −6.3 (2) | C5B—C4B—C16B—O2B | 3.6 (2) |
C3A—C4A—C16A—O2A | 173.36 (14) | C3B—C4B—C16B—O2B | −177.50 (14) |
C5A—C4A—C16A—O3A | 173.93 (12) | C5B—C4B—C16B—O3B | −176.65 (12) |
C3A—C4A—C16A—O3A | −6.43 (19) | C3B—C4B—C16B—O3B | 2.24 (19) |
C16A—O3A—C17A—C18A | 73.83 (18) | C16B—O3B—C17B—C18B | 167.61 (13) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1A—H1OA···N2B | 0.81 (3) | 1.96 (3) | 2.7700 (19) | 177 (3) |
O1B—H1OB···N2A | 0.98 (3) | 1.89 (3) | 2.8680 (18) | 177 (2) |
C2B—H2BA···O1Ai | 0.93 | 2.42 | 3.238 (2) | 146 |
C12B—H12B···O1Bii | 0.93 | 2.55 | 3.416 (2) | 155 |
C13A—H13A···O1A | 0.93 | 2.40 | 3.273 (2) | 157 |
C13B—H13B···O1B | 0.93 | 2.43 | 3.300 (2) | 155 |
C15A—H15B···O2Aiii | 0.97 | 2.53 | 3.135 (2) | 120 |
C17B—H17D···O2Biv | 0.97 | 2.54 | 3.282 (2) | 133 |
Symmetry codes: (i) x−1, y, z; (ii) −x+1, −y+1, −z+1; (iii) x+1, y, z; (iv) −x+2, −y+3, −z+2. |
Experimental details
Crystal data | |
Chemical formula | C18H18N2O3 |
Mr | 310.34 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 8.997 (2), 12.988 (3), 15.030 (3) |
α, β, γ (°) | 103.764 (6), 107.202 (6), 102.929 (6) |
V (Å3) | 1545.5 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.34 × 0.20 × 0.11 |
Data collection | |
Diffractometer | Bruker APEXII DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.970, 0.990 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 34907, 9838, 6952 |
Rint | 0.051 |
(sin θ/λ)max (Å−1) | 0.727 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.051, 0.167, 1.04 |
No. of reflections | 9838 |
No. of parameters | 425 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.41, −0.40 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O1A—H1OA···N2B | 0.81 (3) | 1.96 (3) | 2.7700 (19) | 177 (3) |
O1B—H1OB···N2A | 0.98 (3) | 1.89 (3) | 2.8680 (18) | 177 (2) |
C2B—H2BA···O1Ai | 0.9300 | 2.4200 | 3.238 (2) | 146.00 |
C12B—H12B···O1Bii | 0.9300 | 2.5500 | 3.416 (2) | 155.00 |
C13A—H13A···O1A | 0.9300 | 2.4000 | 3.273 (2) | 157.00 |
C13B—H13B···O1B | 0.9300 | 2.4300 | 3.300 (2) | 155.00 |
C15A—H15B···O2Aiii | 0.9700 | 2.5300 | 3.135 (2) | 120.00 |
C17B—H17D···O2Biv | 0.9700 | 2.5400 | 3.282 (2) | 133.00 |
Symmetry codes: (i) x−1, y, z; (ii) −x+1, −y+1, −z+1; (iii) x+1, y, z; (iv) −x+2, −y+3, −z+2. |
Acknowledgements
NH, SAH and ASAR gratefully acknowledge the International Islamic University Malaysia (IIUM) for an FRGS Grant (FRGS0510-119), USM Research Grant (1001/PFARMASI/815016) and MOSTI (304/PFARMASI/650512/I121) for funding the synthetic chemistry work. FHK and MMR thank Universiti Sains Malaysia for the Research University Golden Goose grant (No. 1001/PFIZIK/811012).
References
Achar, K. C. S., Hosamani, K. M. & Seetharamareddy, H. R. (2010). Eur. J. Med. Chem. 45, 2018–2054. Web of Science CrossRef PubMed Google Scholar
Arumugam, N., Abdul Rahim, A. S., Osman, H., Rosli, M. M. & Fun, H.-K. (2010). Acta Cryst. E66, o1051–o1052. Web of Science CSD CrossRef IUCr Journals Google Scholar
Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107. CrossRef CAS Web of Science IUCr Journals Google Scholar
DeSimone, R. W., Currie, K. S., Mitchell, S. A., Darrow, J. W. & Pippin, D. A. (2004). Comb. Chem. High Throughput Screen. 7, 473–493. Web of Science CrossRef PubMed CAS Google Scholar
Gowda, N. R. T., Kavitha, C. V., Chiruvella, K. K., Joy, O., Rangappa, K. S. & Raghavan, S. C. (2009). Bioorg. Med. Chem. Lett. 19, 4594–4600. Web of Science CrossRef PubMed CAS Google Scholar
Horton, D. A., Bourne, G. T. & Smythe, M. L. (2003). Chem. Rev. 103, 893–930. Web of Science CrossRef PubMed CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Tunçbilek, M., Kiper, T. & Altanlar, N. (2009). Eur. J. Med. Chem. 44, 1024–1033. Web of Science PubMed Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Benzimidazole and its derivatives are compounds which are well known in the pharmaceutical and biological fields (Horton et al., 2003). These heterocycles can serve as molecular scaffolds with versatile binding properties via modifications of their functional groups (DeSimone et al., 2004). Suitably substituted benzimidazole derivatives have been reported to show anti-tumor (Gowda et al., 2009), antimicrobial (Tunçbilek et al., 2009) and anti-inflammatory (Achar et al., 2010) activities. On this basis, we report the structure of the title compound.
The asymmetric unit of (I) contains two molecules (Fig. 1) [A and B] with all geometrical parameters within normal ranges. For both molecules, the benzimidazole ring system (N1/N2/C1–C7) is essentially planar with a maximum deviation of 0.027 (1) and 0.032 (1)Å respectively for atom C7A and N1B. The dihedral angle between the benzimidazole ring system (N1/N2/C1–C7) and the attached benzene ring (C8–C13) is 38.64 (6) and 41.48 (6)° respectively for molecules A and B.
The two independent molecules are connected into a dimer by two intermolecular O—H···N hydrogen bonds (Table 1). In the crystal structure, molecules are connected by weak intermolecular C—H···O interactions (Table 1). These interactions form two-dimensional layers parallel to (0 1 2). In addition there are weak π···π stacking interactions within the asymmetric unit with distances of Cg1···Cg3 = 3.5244 (12) Å and Cg2···Cg4 = 3.6189 (12) Å; Cg1, Cg2, Cg3 and Cg4 and are the centroids of N1A/N2A/C1A/C6A–C7A, C1A–C6A, N1B/N2B/C1B/C6B–C7B and C1B–C6B rings, respectively.