organic compounds
1-Cyanomethyl-4-aza-1-azoniabicyclo[2.2.2]octane bromide dihydrate
aOrdered Matter Science Research Center, Southeast University, Nanjing 211189, People's Republic of China
*Correspondence e-mail: cyik@163.com
In the 8H14N3+·Br−·2H2O, intermolecular O—H⋯O and O—H⋯Br hydrogen bonding occurs. The water molecules are connected into chains extending in the a-axis direction. The bromide anions are connected to the water molecules, forming 10-membered rings. The cations are connected to the anions via weak C—H⋯Br interactions. Two carbon atoms of the cation are disordered and were refined using a split model (occupancy ratio 0.70:0.3).
of the title compound, CRelated literature
For uses of DABCO (1,4-biazabicyclo[2.2.2]octane) and its derivatives, see: Basaviah et al. (2003); Chen et al. (2010).
Experimental
Crystal data
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Data collection: CrystalClear (Rigaku, 2005); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536810019926/nc2186sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810019926/nc2186Isup2.hkl
1,4-Diaza-bicyclo[2.2.2]octane (dabco) (0.05?mol, 5.6?g) and bromoacetonitrile (0.1?mol, 12.00?g) were dissolved in CH3CN(40?ml). The mixture was stirred for 1?h leading to a white precipitate of the title compound whish was filtered off, washed with acetonitrile and dried. Yield: 80%. Afterwards a mixture of 1-(cyanomethyl)-4-aza-1-azonia-bicyclo[2.2.2]octane bromide (0.01?mol 2.32?g) and tetrafluoro-borate sodium (0.01?mol 1.10?g) in H2O (20?ml) was stirred until a clear solution was obtained. On slow evaporation of the solvent colourless plate crystals of the title compand suitable for X-ray analysis were obtained accidently.
The
of the title compound as a function of temperature goes smoothly between 93 and 363?K and there is no dielectric anomaly observed within the measured temperature range.The C—H H atoms were positioned with idealized geometry and refined using a riding model (Uiso(H) = 1.2 Ueq(C). The O—H H atoms were located in difference map, their bond lengths set to ideal values and finally they were refined using a riding model (Uiso(H) = 1.5 Ueq(O). Two carbon atoms are disordered and were refined using a split model and sof of 0.7 and 0.3. The C atoms with lower occupancy were refined only isotropic. The
was determined on the basis of 1134 Friedel-pairs.Data collection: CrystalClear (Rigaku, 2005); cell
CrystalClear (Rigaku, 2005); data reduction: CrystalClear (Rigaku, 2005); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C8H14N3+·Br−·2H2O | F(000) = 552 |
Mr = 268.16 | Dx = 1.502 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 3350 reflections |
a = 7.461 (5) Å | θ = 6.3–55.2° |
b = 12.008 (7) Å | µ = 3.45 mm−1 |
c = 13.236 (8) Å | T = 293 K |
V = 1185.8 (13) Å3 | Prism, colourless |
Z = 4 | 0.20 × 0.20 × 0.20 mm |
Rigaku Mercury CCD diffractometer | 2711 independent reflections |
Radiation source: fine-focus sealed tube | 2219 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.073 |
Detector resolution: 13.6620 pixels mm-1 | θmax = 27.5°, θmin = 3.1° |
ω scans | h = −9→9 |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | k = −15→15 |
Tmin = 0.701, Tmax = 1.000 | l = −17→17 |
13047 measured reflections |
Refinement on F2 | Hydrogen site location: inferred from neighbouring sites |
Least-squares matrix: full | H-atom parameters constrained |
R[F2 > 2σ(F2)] = 0.041 | w = 1/[σ2(Fo2) + (0.0275P)2] where P = (Fo2 + 2Fc2)/3 |
wR(F2) = 0.077 | (Δ/σ)max < 0.001 |
S = 1.01 | Δρmax = 0.29 e Å−3 |
2711 reflections | Δρmin = −0.29 e Å−3 |
140 parameters | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
101 restraints | Extinction coefficient: 0.0055 (11) |
Primary atom site location: structure-invariant direct methods | Absolute structure: Flack (1983), 1134 Friedel pairs |
Secondary atom site location: difference Fourier map | Absolute structure parameter: 0.033 (14) |
C8H14N3+·Br−·2H2O | V = 1185.8 (13) Å3 |
Mr = 268.16 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 7.461 (5) Å | µ = 3.45 mm−1 |
b = 12.008 (7) Å | T = 293 K |
c = 13.236 (8) Å | 0.20 × 0.20 × 0.20 mm |
Rigaku Mercury CCD diffractometer | 2711 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku, 2005) | 2219 reflections with I > 2σ(I) |
Tmin = 0.701, Tmax = 1.000 | Rint = 0.073 |
13047 measured reflections |
R[F2 > 2σ(F2)] = 0.041 | H-atom parameters constrained |
wR(F2) = 0.077 | Δρmax = 0.29 e Å−3 |
S = 1.01 | Δρmin = −0.29 e Å−3 |
2711 reflections | Absolute structure: Flack (1983), 1134 Friedel pairs |
140 parameters | Absolute structure parameter: 0.033 (14) |
101 restraints |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
N1 | 0.3080 (4) | 0.2169 (2) | 0.79551 (19) | 0.0332 (7) | |
C1 | 0.3169 (6) | 0.2800 (3) | 0.8942 (3) | 0.0470 (10) | |
H1A | 0.3725 | 0.2343 | 0.9458 | 0.056* | |
H1B | 0.1972 | 0.2997 | 0.9165 | 0.056* | |
C2 | 0.4287 (6) | 0.3857 (3) | 0.8761 (3) | 0.0623 (11) | |
H2A | 0.3617 | 0.4499 | 0.8995 | 0.075* | |
H2B | 0.5381 | 0.3812 | 0.9154 | 0.075* | |
C3 | 0.2110 (6) | 0.2873 (3) | 0.7178 (3) | 0.0640 (13) | |
H3A | 0.0839 | 0.2899 | 0.7330 | 0.077* | 0.70 |
H3B | 0.2262 | 0.2556 | 0.6509 | 0.077* | 0.70 |
H3C | 0.1046 | 0.3208 | 0.7470 | 0.077* | 0.30 |
H3D | 0.1755 | 0.2422 | 0.6604 | 0.077* | 0.30 |
C4 | 0.2926 (10) | 0.4068 (6) | 0.7216 (5) | 0.053 (2) | 0.70 |
H4A | 0.3034 | 0.4364 | 0.6536 | 0.063* | 0.70 |
H4B | 0.2148 | 0.4557 | 0.7600 | 0.063* | 0.70 |
C4' | 0.349 (2) | 0.3801 (15) | 0.6842 (12) | 0.078 (8) | 0.30 |
H4C | 0.4151 | 0.3555 | 0.6253 | 0.093* | 0.30 |
H4D | 0.2852 | 0.4480 | 0.6669 | 0.093* | 0.30 |
C5 | 0.4948 (6) | 0.1953 (3) | 0.7609 (4) | 0.0645 (12) | |
H5A | 0.4948 | 0.1434 | 0.7048 | 0.077* | 0.70 |
H5B | 0.5654 | 0.1638 | 0.8154 | 0.077* | 0.70 |
H5C | 0.4924 | 0.1661 | 0.6926 | 0.077* | 0.30 |
H5D | 0.5497 | 0.1398 | 0.8042 | 0.077* | 0.30 |
C6 | 0.5746 (11) | 0.3096 (5) | 0.7274 (8) | 0.0645 (12) | 0.70 |
H6A | 0.6987 | 0.3144 | 0.7489 | 0.077* | 0.70 |
H6B | 0.5718 | 0.3148 | 0.6543 | 0.077* | 0.70 |
C6' | 0.6115 (17) | 0.3066 (10) | 0.7634 (12) | 0.078 (8) | 0.30 |
H6C | 0.6908 | 0.3071 | 0.8215 | 0.094* | 0.30 |
H6D | 0.6830 | 0.3135 | 0.7025 | 0.094* | 0.30 |
N2 | 0.4744 (4) | 0.4012 (3) | 0.7705 (3) | 0.0493 (8) | |
C7 | 0.2164 (5) | 0.1068 (3) | 0.8091 (3) | 0.0435 (9) | |
H7A | 0.2139 | 0.0676 | 0.7450 | 0.052* | |
H7B | 0.2836 | 0.0619 | 0.8568 | 0.052* | |
C8 | 0.0335 (6) | 0.1213 (3) | 0.8459 (3) | 0.0488 (10) | |
N3 | −0.1082 (6) | 0.1335 (3) | 0.8753 (3) | 0.0724 (11) | |
Br1 | 0.08721 (5) | −0.01932 (3) | 0.56114 (3) | 0.05169 (15) | |
O1 | 0.4108 (4) | 0.1366 (2) | 0.4565 (2) | 0.0779 (9) | |
H1O1 | 0.3519 | 0.0980 | 0.4953 | 0.117* | |
H2O1 | 0.4970 | 0.1418 | 0.4946 | 0.117* | |
O2 | 0.2440 (4) | 0.3445 (2) | 0.4497 (2) | 0.0736 (9) | |
H1O2 | 0.2887 | 0.2823 | 0.4448 | 0.110* | |
H2O2 | 0.3207 | 0.3932 | 0.4458 | 0.110* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1 | 0.0371 (15) | 0.0258 (15) | 0.0368 (16) | 0.0016 (13) | −0.0012 (12) | −0.0057 (12) |
C1 | 0.061 (3) | 0.042 (2) | 0.038 (2) | −0.0100 (19) | 0.0000 (18) | −0.0081 (16) |
C2 | 0.063 (3) | 0.049 (2) | 0.074 (3) | −0.022 (3) | 0.012 (3) | −0.017 (2) |
C3 | 0.079 (3) | 0.056 (3) | 0.057 (2) | −0.013 (3) | −0.027 (2) | 0.021 (2) |
C4 | 0.070 (4) | 0.044 (4) | 0.044 (4) | 0.010 (3) | 0.003 (3) | 0.012 (3) |
C4' | 0.12 (2) | 0.036 (10) | 0.081 (15) | −0.034 (12) | −0.028 (13) | 0.018 (10) |
C5 | 0.051 (2) | 0.041 (2) | 0.101 (3) | 0.0023 (19) | 0.032 (2) | −0.009 (2) |
C6 | 0.051 (2) | 0.041 (2) | 0.101 (3) | 0.0023 (19) | 0.032 (2) | −0.009 (2) |
C6' | 0.076 (13) | 0.085 (13) | 0.072 (13) | −0.067 (12) | 0.050 (10) | −0.046 (10) |
N2 | 0.0519 (19) | 0.0353 (17) | 0.061 (2) | −0.0021 (15) | 0.0030 (16) | 0.0087 (16) |
C7 | 0.051 (2) | 0.0298 (19) | 0.049 (2) | −0.0041 (18) | 0.0025 (19) | 0.0010 (16) |
C8 | 0.052 (3) | 0.042 (2) | 0.052 (2) | −0.0124 (19) | −0.0037 (19) | −0.0013 (18) |
N3 | 0.058 (3) | 0.072 (3) | 0.087 (3) | −0.014 (2) | 0.004 (2) | −0.012 (2) |
Br1 | 0.0441 (2) | 0.0516 (2) | 0.0595 (2) | 0.00308 (19) | −0.00010 (19) | −0.00776 (18) |
O1 | 0.0656 (19) | 0.0689 (19) | 0.099 (2) | 0.0058 (19) | −0.008 (2) | 0.0238 (17) |
O2 | 0.0561 (18) | 0.0486 (17) | 0.116 (3) | −0.0053 (15) | −0.009 (2) | 0.0014 (18) |
N1—C5 | 1.490 (5) | C4'—H4D | 0.9700 |
N1—C7 | 1.499 (4) | C5—C6 | 1.560 (8) |
N1—C1 | 1.511 (4) | C5—C6' | 1.595 (12) |
N1—C3 | 1.515 (5) | C5—H5A | 0.9700 |
C1—C2 | 1.538 (5) | C5—H5B | 0.9700 |
C1—H1A | 0.9700 | C5—H5C | 0.9700 |
C1—H1B | 0.9700 | C5—H5D | 0.9700 |
C2—N2 | 1.451 (5) | C6—N2 | 1.448 (7) |
C2—H2A | 0.9700 | C6—H6A | 0.9700 |
C2—H2B | 0.9700 | C6—H6B | 0.9700 |
C3—C4 | 1.560 (8) | C6'—N2 | 1.532 (13) |
C3—C4' | 1.579 (14) | C6'—H6C | 0.9700 |
C3—H3A | 0.9700 | C6'—H6D | 0.9700 |
C3—H3B | 0.9700 | C7—C8 | 1.459 (6) |
C3—H3C | 0.9700 | C7—H7A | 0.9700 |
C3—H3D | 0.9700 | C7—H7B | 0.9700 |
C4—N2 | 1.504 (8) | C8—N3 | 1.136 (5) |
C4—H4A | 0.9700 | O1—H1O1 | 0.8201 |
C4—H4B | 0.9700 | O1—H2O1 | 0.8200 |
C4'—N2 | 1.500 (14) | O2—H1O2 | 0.8201 |
C4'—H4C | 0.9700 | O2—H2O2 | 0.8200 |
C5—N1—C7 | 108.0 (3) | N1—C5—C6' | 111.0 (5) |
C5—N1—C1 | 108.2 (3) | C6—C5—C6' | 20.1 (9) |
C7—N1—C1 | 111.0 (3) | N1—C5—H5A | 110.3 |
C5—N1—C3 | 109.6 (3) | C6—C5—H5A | 110.3 |
C7—N1—C3 | 110.8 (3) | C6'—C5—H5A | 123.7 |
C1—N1—C3 | 109.2 (3) | N1—C5—H5B | 110.3 |
N1—C1—C2 | 107.6 (3) | C6—C5—H5B | 110.3 |
N1—C1—H1A | 110.2 | C6'—C5—H5B | 90.9 |
C2—C1—H1A | 110.2 | H5A—C5—H5B | 108.6 |
N1—C1—H1B | 110.2 | N1—C5—H5C | 109.4 |
C2—C1—H1B | 110.2 | C6—C5—H5C | 93.5 |
H1A—C1—H1B | 108.5 | C6'—C5—H5C | 109.4 |
N2—C2—C1 | 112.6 (3) | H5A—C5—H5C | 18.8 |
N2—C2—H2A | 109.1 | H5B—C5—H5C | 124.1 |
C1—C2—H2A | 109.1 | N1—C5—H5D | 109.4 |
N2—C2—H2B | 109.1 | C6—C5—H5D | 127.7 |
C1—C2—H2B | 109.1 | C6'—C5—H5D | 109.4 |
H2A—C2—H2B | 107.8 | H5A—C5—H5D | 90.6 |
N1—C3—C4 | 107.7 (4) | H5B—C5—H5D | 20.4 |
N1—C3—C4' | 105.9 (7) | H5C—C5—H5D | 108.0 |
C4—C3—C4' | 26.6 (8) | N2—C6—C5 | 111.1 (5) |
N1—C3—H3A | 110.2 | N2—C6—H6A | 109.4 |
C4—C3—H3A | 110.2 | C5—C6—H6A | 109.4 |
C4'—C3—H3A | 132.1 | N2—C6—H6B | 109.4 |
N1—C3—H3B | 110.2 | C5—C6—H6B | 109.4 |
C4—C3—H3B | 110.2 | H6A—C6—H6B | 108.0 |
C4'—C3—H3B | 86.8 | N2—C6'—C5 | 104.9 (8) |
H3A—C3—H3B | 108.5 | N2—C6'—H6C | 110.8 |
N1—C3—H3C | 110.6 | C5—C6'—H6C | 110.8 |
C4—C3—H3C | 85.7 | N2—C6'—H6D | 110.8 |
C4'—C3—H3C | 110.6 | C5—C6'—H6D | 110.8 |
H3A—C3—H3C | 26.3 | H6C—C6'—H6D | 108.8 |
H3B—C3—H3C | 128.5 | C6—N2—C2 | 113.8 (5) |
N1—C3—H3D | 110.6 | C6—N2—C4' | 84.0 (10) |
C4—C3—H3D | 130.2 | C2—N2—C4' | 124.4 (7) |
C4'—C3—H3D | 110.6 | C6—N2—C4 | 109.2 (5) |
H3A—C3—H3D | 85.1 | C2—N2—C4 | 102.0 (4) |
H3B—C3—H3D | 25.6 | C4'—N2—C4 | 27.8 (9) |
H3C—C3—H3D | 108.7 | C6—N2—C6' | 21.1 (8) |
N2—C4—C3 | 109.0 (5) | C2—N2—C6' | 96.9 (6) |
N2—C4—H4A | 109.9 | C4'—N2—C6' | 104.3 (10) |
C3—C4—H4A | 109.9 | C4—N2—C6' | 127.5 (6) |
N2—C4—H4B | 109.9 | C8—C7—N1 | 111.2 (3) |
C3—C4—H4B | 109.9 | C8—C7—H7A | 109.4 |
H4A—C4—H4B | 108.3 | N1—C7—H7A | 109.4 |
N2—C4'—C3 | 108.2 (9) | C8—C7—H7B | 109.4 |
N2—C4'—H4C | 110.1 | N1—C7—H7B | 109.4 |
C3—C4'—H4C | 110.1 | H7A—C7—H7B | 108.0 |
N2—C4'—H4D | 110.1 | N3—C8—C7 | 179.2 (5) |
C3—C4'—H4D | 110.1 | H1O1—O1—H2O1 | 94.5 |
H4C—C4'—H4D | 108.4 | H1O2—O2—H2O2 | 111.1 |
N1—C5—C6 | 106.9 (4) |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···Br1 | 0.82 | 2.58 | 3.354 (3) | 159 |
O2—H1O2···O1 | 0.82 | 1.98 | 2.791 (4) | 170 |
O1—H2O1···O2i | 0.82 | 1.99 | 2.788 (5) | 164 |
O2—H2O2···Br1i | 0.82 | 2.50 | 3.314 (3) | 172 |
C7—H7A···Br1 | 0.97 | 2.81 | 3.740 (5) | 161 |
C7—H7B···Br1ii | 0.97 | 2.92 | 3.792 (8) | 151 |
Symmetry codes: (i) x+1/2, −y+1/2, −z+1; (ii) −x+1/2, −y, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C8H14N3+·Br−·2H2O |
Mr | 268.16 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 293 |
a, b, c (Å) | 7.461 (5), 12.008 (7), 13.236 (8) |
V (Å3) | 1185.8 (13) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 3.45 |
Crystal size (mm) | 0.20 × 0.20 × 0.20 |
Data collection | |
Diffractometer | Rigaku Mercury CCD diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku, 2005) |
Tmin, Tmax | 0.701, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13047, 2711, 2219 |
Rint | 0.073 |
(sin θ/λ)max (Å−1) | 0.649 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.041, 0.077, 1.01 |
No. of reflections | 2711 |
No. of parameters | 140 |
No. of restraints | 101 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.29 |
Absolute structure | Flack (1983), 1134 Friedel pairs |
Absolute structure parameter | 0.033 (14) |
Computer programs: CrystalClear (Rigaku, 2005), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H1O1···Br1 | 0.82 | 2.58 | 3.354 (3) | 158.7 |
O2—H1O2···O1 | 0.82 | 1.98 | 2.791 (4) | 170.4 |
O1—H2O1···O2i | 0.82 | 1.99 | 2.788 (5) | 163.8 |
O2—H2O2···Br1i | 0.82 | 2.50 | 3.314 (3) | 171.5 |
C7—H7A···Br1 | 0.97 | 2.81 | 3.740 (5) | 161 |
C7—H7B···Br1ii | 0.97 | 2.92 | 3.792 (8) | 151 |
Symmetry codes: (i) x+1/2, −y+1/2, −z+1; (ii) −x+1/2, −y, z+1/2. |
References
Basaviah, D., Rao, A. J. & Satyanarayana, T. (2003). Chem. Rev. 103, 811–891. Web of Science PubMed Google Scholar
Chen, L. Z., Huang, Y., Xiong, R. G. & Hu, H. W. (2010). J. Mol. Struct. 963, 16–21. Web of Science CSD CrossRef CAS Google Scholar
Flack, H. D. (1983). Acta Cryst. A39, 876–881. CrossRef CAS Web of Science IUCr Journals Google Scholar
Rigaku (2005). CrystalClear. Rigaku Corporation, Tokyo, Japan. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
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1,4-Diazabicyclo[2.2.2]octane (DABCO) is used as a organocatalyst for a large number of reactions because of its nucleophilicity (Basaviah et al., 2003) and some of its derivatives are ferroelectrics (Chen et al., 2010). The structure determination of the title compound was performed within a project on the electric properties of 1,4-Diazabicyclo[2.2.2]octane derivatives. Within this project the crystals of the title compound were obtained by accident.
In the crystal stucture of the title compound two C atoms of the cation are disordered (Fig. 1). The cations and anions are connected by weak intermolecular C—H···Br interactions. The bromide anions are additionally linked to the water molecules via intermolecular O—H···Br hydrogen bonding and the water molecules are connected into chains that elongate in the direction of the a axis (Fig. 2). Each water molecule act as hydrogen bond donor and acceptor. The bromide anions and the water molecules forming ten-membered rings.