organic compounds
1,3-Bis(4-methoxybenzyl)-6-methylpyrimidine-2,4(1H,3H)-dione
aCollege of Chemistry and Chemical Engineering, Xuchang University, Xuchang, Henan Province 461000, People's Republic of China
*Correspondence e-mail: actaeli@gmail.com
The title compound, C21H22N2O4, was prepared by reaction of 6-methylpyrimidine-2,4(1H,3H)-dione and 1-chloromethyl-4-methoxybenzene. In the title molecule, the central pyrimidine ring forms dihedral angles of 62.16 (4) and 69.77 (3)° with the two benzene rings. In the crystal, weak intermolecular C—H⋯O hydrogen bonds link the molecules into chains.
Related literature
For the applications of pyrimidine derivatives as pesticides and pharmaceutical agents, see: Condon et al. (1993); as agrochemicals, see: Maeno et al. (1990); as antiviral agents, see: Gilchrist (1997); as herbicides, see: Selby et al. (2002); Zhu et al. (2007). For a related structure, see: Yang & Li (2006).
Experimental
Crystal data
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Refinement
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Data collection: CrystalClear (Rigaku/MSC, 2009); cell CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku/MSC, 2009); software used to prepare material for publication: CrystalStructure.
Supporting information
10.1107/S1600536810024815/pk2250sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810024815/pk2250Isup2.hkl
6-methylpyrimidine-2,4(1H,3H)-dione (0.63 g, 5 mmol) and anhydrous potassium carbonate (0.84 g, 6 mmol) were mixed in dimethylformamide (20 ml). A solution of 1-(chloromethyl)-4-methoxybenzene (0.79 g, 5 mmol) in acetone (10 ml) was then added dropwise, with stirring at room temperature, and the mixture was stirred for another 10 h and then refluxed for 4 h. The solvent was evaporated in vacuo and the residue was washed with water. The resulting white precipitate was recrystallized from ethanol and single crystals were obtained by slow evaporation.
All H atoms were placed in calculated positions, with C—H = 0.95 Å, 0.98 Å or 0.99 Å, and included in the final cycles of
using a riding model, with Uiso(H) = 1.2Ueq(C).Data collection: CrystalClear (Rigaku/MSC, 2009); cell
CrystalClear (Rigaku/MSC, 2009); data reduction: CrystalClear (Rigaku/MSC, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: CrystalStructure (Rigaku/MSC, 2009); software used to prepare material for publication: CrystalStructure (Rigaku/MSC, 2009).C21H22N2O4 | F(000) = 776 |
Mr = 366.41 | Dx = 1.361 Mg m−3 |
Monoclinic, P21/n | Mo Kα radiation, λ = 0.71075 Å |
Hall symbol: -P 2yn | Cell parameters from 5810 reflections |
a = 8.4133 (9) Å | θ = 1.9–28.0° |
b = 9.929 (1) Å | µ = 0.10 mm−1 |
c = 21.407 (3) Å | T = 113 K |
β = 91.614 (4)° | Prism, colorless |
V = 1787.5 (3) Å3 | 0.26 × 0.24 × 0.22 mm |
Z = 4 |
Rigaku Saturn724 CCD diffractometer | 4250 independent reflections |
Radiation source: fine-focus sealed tube | 3035 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.037 |
Detector resolution: 14.222 pixels mm-1 | θmax = 27.9°, θmin = 1.9° |
ω scans | h = −9→11 |
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2009) | k = −12→13 |
Tmin = 0.976, Tmax = 0.979 | l = −28→28 |
17394 measured reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 0.98 | w = 1/[σ2(Fo2) + (0.0556P)2] where P = (Fo2 + 2Fc2)/3 |
4250 reflections | (Δ/σ)max = 0.001 |
247 parameters | Δρmax = 0.29 e Å−3 |
0 restraints | Δρmin = −0.16 e Å−3 |
C21H22N2O4 | V = 1787.5 (3) Å3 |
Mr = 366.41 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 8.4133 (9) Å | µ = 0.10 mm−1 |
b = 9.929 (1) Å | T = 113 K |
c = 21.407 (3) Å | 0.26 × 0.24 × 0.22 mm |
β = 91.614 (4)° |
Rigaku Saturn724 CCD diffractometer | 4250 independent reflections |
Absorption correction: multi-scan (CrystalClear; Rigaku/MSC, 2009) | 3035 reflections with I > 2σ(I) |
Tmin = 0.976, Tmax = 0.979 | Rint = 0.037 |
17394 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 0 restraints |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 0.98 | Δρmax = 0.29 e Å−3 |
4250 reflections | Δρmin = −0.16 e Å−3 |
247 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.77270 (10) | −0.03179 (8) | 0.39409 (4) | 0.0326 (2) | |
O2 | 1.05849 (10) | 0.35414 (9) | 0.42566 (4) | 0.0349 (2) | |
O3 | 0.38155 (9) | 0.43800 (8) | 0.57937 (3) | 0.0258 (2) | |
O4 | 1.17640 (10) | −0.48075 (8) | 0.20574 (4) | 0.0286 (2) | |
N1 | 0.91553 (10) | 0.16121 (9) | 0.41019 (4) | 0.0235 (2) | |
N2 | 0.87518 (10) | 0.07201 (9) | 0.30901 (4) | 0.0231 (2) | |
C1 | 0.84910 (13) | 0.06125 (12) | 0.37267 (5) | 0.0244 (3) | |
C2 | 1.00559 (13) | 0.27014 (12) | 0.38848 (5) | 0.0257 (3) | |
C3 | 1.02826 (13) | 0.27076 (12) | 0.32258 (5) | 0.0257 (3) | |
H3 | 1.0893 | 0.3408 | 0.3049 | 0.031* | |
C4 | 0.96571 (13) | 0.17502 (11) | 0.28489 (5) | 0.0234 (2) | |
C5 | 0.99072 (15) | 0.17657 (13) | 0.21620 (5) | 0.0304 (3) | |
H5A | 1.0646 | 0.2492 | 0.2061 | 0.037* | |
H5B | 0.8888 | 0.1915 | 0.1940 | 0.037* | |
H5C | 1.0353 | 0.0900 | 0.2034 | 0.037* | |
C6 | 0.89544 (14) | 0.14901 (13) | 0.47867 (5) | 0.0275 (3) | |
H6A | 0.9940 | 0.1808 | 0.5003 | 0.033* | |
H6B | 0.8820 | 0.0526 | 0.4891 | 0.033* | |
C7 | 0.75633 (13) | 0.22666 (12) | 0.50352 (5) | 0.0229 (3) | |
C8 | 0.77921 (13) | 0.34760 (12) | 0.53566 (5) | 0.0244 (3) | |
H8 | 0.8833 | 0.3838 | 0.5406 | 0.029* | |
C9 | 0.65212 (13) | 0.41528 (12) | 0.56044 (5) | 0.0240 (3) | |
H9 | 0.6692 | 0.4972 | 0.5825 | 0.029* | |
C10 | 0.49895 (13) | 0.36351 (11) | 0.55308 (5) | 0.0213 (2) | |
C11 | 0.47377 (14) | 0.24358 (12) | 0.52095 (5) | 0.0250 (3) | |
H11 | 0.3694 | 0.2080 | 0.5156 | 0.030* | |
C12 | 0.60341 (13) | 0.17605 (12) | 0.49672 (5) | 0.0248 (3) | |
H12 | 0.5866 | 0.0935 | 0.4751 | 0.030* | |
C13 | 0.22263 (13) | 0.38888 (13) | 0.57144 (6) | 0.0292 (3) | |
H13A | 0.1932 | 0.3867 | 0.5268 | 0.035* | |
H13B | 0.1497 | 0.4485 | 0.5933 | 0.035* | |
H13C | 0.2160 | 0.2978 | 0.5888 | 0.035* | |
C14 | 0.79638 (13) | −0.02957 (12) | 0.26809 (6) | 0.0263 (3) | |
H14A | 0.7576 | 0.0153 | 0.2293 | 0.032* | |
H14B | 0.7027 | −0.0656 | 0.2895 | 0.032* | |
C15 | 0.90264 (13) | −0.14602 (11) | 0.25073 (5) | 0.0224 (2) | |
C16 | 0.97928 (13) | −0.22551 (12) | 0.29611 (5) | 0.0236 (3) | |
H16 | 0.9686 | −0.2036 | 0.3390 | 0.028* | |
C17 | 1.06997 (13) | −0.33503 (12) | 0.28015 (5) | 0.0243 (3) | |
H17 | 1.1212 | −0.3876 | 0.3118 | 0.029* | |
C18 | 1.08652 (13) | −0.36866 (11) | 0.21741 (5) | 0.0224 (2) | |
C19 | 1.01334 (13) | −0.28976 (12) | 0.17146 (5) | 0.0251 (3) | |
H19 | 1.0255 | −0.3107 | 0.1286 | 0.030* | |
C20 | 0.92206 (13) | −0.17982 (12) | 0.18864 (5) | 0.0249 (3) | |
H20 | 0.8717 | −0.1265 | 0.1570 | 0.030* | |
C21 | 1.18686 (15) | −0.52057 (13) | 0.14183 (5) | 0.0324 (3) | |
H21A | 1.0798 | −0.5359 | 0.1241 | 0.039* | |
H21B | 1.2489 | −0.6038 | 0.1393 | 0.039* | |
H21C | 1.2391 | −0.4493 | 0.1183 | 0.039* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0372 (5) | 0.0225 (5) | 0.0387 (5) | −0.0028 (4) | 0.0125 (4) | −0.0013 (4) |
O2 | 0.0361 (5) | 0.0325 (5) | 0.0360 (5) | −0.0066 (4) | −0.0008 (4) | −0.0107 (4) |
O3 | 0.0232 (4) | 0.0286 (5) | 0.0256 (4) | 0.0020 (3) | 0.0020 (3) | −0.0037 (3) |
O4 | 0.0340 (5) | 0.0237 (5) | 0.0280 (4) | 0.0067 (4) | 0.0025 (3) | −0.0041 (3) |
N1 | 0.0242 (5) | 0.0204 (5) | 0.0259 (5) | 0.0032 (4) | 0.0031 (4) | −0.0023 (4) |
N2 | 0.0226 (5) | 0.0181 (5) | 0.0287 (5) | 0.0000 (4) | 0.0040 (4) | −0.0044 (4) |
C1 | 0.0224 (6) | 0.0187 (6) | 0.0322 (6) | 0.0036 (5) | 0.0054 (5) | −0.0008 (5) |
C2 | 0.0213 (6) | 0.0224 (6) | 0.0334 (6) | 0.0026 (5) | 0.0004 (5) | −0.0041 (5) |
C3 | 0.0240 (6) | 0.0204 (6) | 0.0328 (6) | −0.0003 (5) | 0.0053 (5) | −0.0014 (5) |
C4 | 0.0197 (6) | 0.0202 (6) | 0.0305 (6) | 0.0034 (5) | 0.0037 (4) | 0.0000 (5) |
C5 | 0.0354 (7) | 0.0269 (7) | 0.0292 (6) | −0.0024 (5) | 0.0058 (5) | −0.0024 (5) |
C6 | 0.0286 (6) | 0.0266 (7) | 0.0274 (6) | 0.0056 (5) | 0.0003 (5) | 0.0015 (5) |
C7 | 0.0267 (6) | 0.0223 (6) | 0.0197 (5) | 0.0022 (5) | 0.0012 (4) | 0.0043 (4) |
C8 | 0.0225 (6) | 0.0276 (7) | 0.0229 (6) | −0.0012 (5) | −0.0011 (4) | 0.0016 (5) |
C9 | 0.0285 (6) | 0.0222 (6) | 0.0212 (6) | −0.0012 (5) | −0.0009 (4) | −0.0016 (4) |
C10 | 0.0252 (6) | 0.0232 (6) | 0.0158 (5) | 0.0029 (5) | 0.0022 (4) | 0.0025 (4) |
C11 | 0.0238 (6) | 0.0279 (7) | 0.0233 (6) | −0.0039 (5) | 0.0012 (4) | 0.0000 (5) |
C12 | 0.0317 (6) | 0.0214 (6) | 0.0214 (5) | −0.0007 (5) | 0.0024 (5) | −0.0005 (5) |
C13 | 0.0234 (6) | 0.0330 (7) | 0.0316 (6) | 0.0002 (5) | 0.0049 (5) | 0.0002 (5) |
C14 | 0.0236 (6) | 0.0220 (6) | 0.0334 (6) | −0.0016 (5) | 0.0003 (5) | −0.0049 (5) |
C15 | 0.0196 (6) | 0.0174 (6) | 0.0303 (6) | −0.0033 (4) | 0.0022 (4) | −0.0034 (5) |
C16 | 0.0257 (6) | 0.0228 (6) | 0.0225 (5) | −0.0043 (5) | 0.0036 (4) | −0.0023 (5) |
C17 | 0.0264 (6) | 0.0226 (6) | 0.0237 (6) | −0.0017 (5) | −0.0008 (4) | 0.0015 (5) |
C18 | 0.0223 (6) | 0.0173 (6) | 0.0277 (6) | −0.0022 (5) | 0.0027 (4) | −0.0023 (5) |
C19 | 0.0301 (6) | 0.0234 (6) | 0.0217 (6) | −0.0025 (5) | 0.0010 (4) | −0.0031 (5) |
C20 | 0.0278 (6) | 0.0209 (6) | 0.0260 (6) | −0.0004 (5) | −0.0029 (4) | 0.0016 (5) |
C21 | 0.0394 (7) | 0.0273 (7) | 0.0309 (7) | 0.0042 (6) | 0.0067 (5) | −0.0069 (5) |
O1—C1 | 1.2220 (13) | C9—C10 | 1.3922 (15) |
O2—C2 | 1.2276 (14) | C9—H9 | 0.9500 |
O3—C10 | 1.3677 (13) | C10—C11 | 1.3886 (16) |
O3—C13 | 1.4288 (13) | C11—C12 | 1.3929 (15) |
O4—C18 | 1.3723 (13) | C11—H11 | 0.9500 |
O4—C21 | 1.4292 (14) | C12—H12 | 0.9500 |
N1—C1 | 1.3848 (15) | C13—H13A | 0.9800 |
N1—C2 | 1.4070 (15) | C13—H13B | 0.9800 |
N1—C6 | 1.4853 (14) | C13—H13C | 0.9800 |
N2—C4 | 1.3838 (14) | C14—C15 | 1.5142 (15) |
N2—C1 | 1.3904 (14) | C14—H14A | 0.9900 |
N2—C14 | 1.4803 (14) | C14—H14B | 0.9900 |
C2—C3 | 1.4290 (15) | C15—C20 | 1.3850 (15) |
C3—C4 | 1.3444 (16) | C15—C16 | 1.3954 (16) |
C3—H3 | 0.9500 | C16—C17 | 1.3770 (16) |
C4—C5 | 1.4914 (15) | C16—H16 | 0.9500 |
C5—H5A | 0.9800 | C17—C18 | 1.3949 (15) |
C5—H5B | 0.9800 | C17—H17 | 0.9500 |
C5—H5C | 0.9800 | C18—C19 | 1.3879 (16) |
C6—C7 | 1.5108 (15) | C19—C20 | 1.3901 (16) |
C6—H6A | 0.9900 | C19—H19 | 0.9500 |
C6—H6B | 0.9900 | C20—H20 | 0.9500 |
C7—C12 | 1.3850 (15) | C21—H21A | 0.9800 |
C7—C8 | 1.3946 (16) | C21—H21B | 0.9800 |
C8—C9 | 1.3814 (15) | C21—H21C | 0.9800 |
C8—H8 | 0.9500 | ||
C10—O3—C13 | 116.79 (9) | C11—C10—C9 | 120.04 (10) |
C18—O4—C21 | 116.59 (9) | C10—C11—C12 | 119.15 (11) |
C1—N1—C2 | 124.87 (9) | C10—C11—H11 | 120.4 |
C1—N1—C6 | 117.30 (9) | C12—C11—H11 | 120.4 |
C2—N1—C6 | 117.78 (9) | C7—C12—C11 | 121.40 (11) |
C4—N2—C1 | 121.75 (9) | C7—C12—H12 | 119.3 |
C4—N2—C14 | 121.65 (9) | C11—C12—H12 | 119.3 |
C1—N2—C14 | 116.56 (9) | O3—C13—H13A | 109.5 |
O1—C1—N1 | 122.15 (11) | O3—C13—H13B | 109.5 |
O1—C1—N2 | 121.67 (10) | H13A—C13—H13B | 109.5 |
N1—C1—N2 | 116.18 (10) | O3—C13—H13C | 109.5 |
O2—C2—N1 | 119.80 (10) | H13A—C13—H13C | 109.5 |
O2—C2—C3 | 125.52 (11) | H13B—C13—H13C | 109.5 |
N1—C2—C3 | 114.68 (10) | N2—C14—C15 | 114.07 (9) |
C4—C3—C2 | 121.90 (11) | N2—C14—H14A | 108.7 |
C4—C3—H3 | 119.0 | C15—C14—H14A | 108.7 |
C2—C3—H3 | 119.0 | N2—C14—H14B | 108.7 |
C3—C4—N2 | 120.60 (10) | C15—C14—H14B | 108.7 |
C3—C4—C5 | 121.37 (11) | H14A—C14—H14B | 107.6 |
N2—C4—C5 | 118.03 (10) | C20—C15—C16 | 117.80 (10) |
C4—C5—H5A | 109.5 | C20—C15—C14 | 120.46 (10) |
C4—C5—H5B | 109.5 | C16—C15—C14 | 121.70 (10) |
H5A—C5—H5B | 109.5 | C17—C16—C15 | 121.49 (10) |
C4—C5—H5C | 109.5 | C17—C16—H16 | 119.3 |
H5A—C5—H5C | 109.5 | C15—C16—H16 | 119.3 |
H5B—C5—H5C | 109.5 | C16—C17—C18 | 119.94 (10) |
N1—C6—C7 | 114.63 (9) | C16—C17—H17 | 120.0 |
N1—C6—H6A | 108.6 | C18—C17—H17 | 120.0 |
C7—C6—H6A | 108.6 | O4—C18—C19 | 124.37 (10) |
N1—C6—H6B | 108.6 | O4—C18—C17 | 116.09 (10) |
C7—C6—H6B | 108.6 | C19—C18—C17 | 119.54 (10) |
H6A—C6—H6B | 107.6 | C18—C19—C20 | 119.54 (10) |
C12—C7—C8 | 118.64 (10) | C18—C19—H19 | 120.2 |
C12—C7—C6 | 120.28 (11) | C20—C19—H19 | 120.2 |
C8—C7—C6 | 121.04 (10) | C15—C20—C19 | 121.68 (10) |
C9—C8—C7 | 120.71 (11) | C15—C20—H20 | 119.2 |
C9—C8—H8 | 119.6 | C19—C20—H20 | 119.2 |
C7—C8—H8 | 119.6 | O4—C21—H21A | 109.5 |
C8—C9—C10 | 120.06 (11) | O4—C21—H21B | 109.5 |
C8—C9—H9 | 120.0 | H21A—C21—H21B | 109.5 |
C10—C9—H9 | 120.0 | O4—C21—H21C | 109.5 |
O3—C10—C11 | 124.45 (10) | H21A—C21—H21C | 109.5 |
O3—C10—C9 | 115.51 (10) | H21B—C21—H21C | 109.5 |
C2—N1—C1—O1 | 179.48 (10) | C7—C8—C9—C10 | −0.49 (16) |
C6—N1—C1—O1 | 2.11 (16) | C13—O3—C10—C11 | −1.51 (15) |
C2—N1—C1—N2 | −0.05 (15) | C13—O3—C10—C9 | 178.71 (9) |
C6—N1—C1—N2 | −177.43 (9) | C8—C9—C10—O3 | 179.95 (9) |
C4—N2—C1—O1 | −178.01 (10) | C8—C9—C10—C11 | 0.15 (16) |
C14—N2—C1—O1 | 4.12 (15) | O3—C10—C11—C12 | −179.39 (10) |
C4—N2—C1—N1 | 1.53 (15) | C9—C10—C11—C12 | 0.38 (16) |
C14—N2—C1—N1 | −176.34 (9) | C8—C7—C12—C11 | 0.28 (16) |
C1—N1—C2—O2 | 179.50 (10) | C6—C7—C12—C11 | 177.94 (10) |
C6—N1—C2—O2 | −3.13 (15) | C10—C11—C12—C7 | −0.60 (16) |
C1—N1—C2—C3 | −1.11 (15) | C4—N2—C14—C15 | 84.38 (13) |
C6—N1—C2—C3 | 176.25 (9) | C1—N2—C14—C15 | −97.75 (11) |
O2—C2—C3—C4 | −179.76 (12) | N2—C14—C15—C20 | −126.06 (11) |
N1—C2—C3—C4 | 0.89 (16) | N2—C14—C15—C16 | 56.27 (14) |
C2—C3—C4—N2 | 0.48 (17) | C20—C15—C16—C17 | −0.72 (16) |
C2—C3—C4—C5 | −179.79 (10) | C14—C15—C16—C17 | 177.00 (10) |
C1—N2—C4—C3 | −1.78 (16) | C15—C16—C17—C18 | −0.11 (16) |
C14—N2—C4—C3 | 175.98 (10) | C21—O4—C18—C19 | −3.25 (15) |
C1—N2—C4—C5 | 178.48 (10) | C21—O4—C18—C17 | 176.61 (10) |
C14—N2—C4—C5 | −3.75 (15) | C16—C17—C18—O4 | −178.78 (9) |
C1—N1—C6—C7 | −95.32 (12) | C16—C17—C18—C19 | 1.09 (16) |
C2—N1—C6—C7 | 87.11 (12) | O4—C18—C19—C20 | 178.63 (10) |
N1—C6—C7—C12 | 78.75 (13) | C17—C18—C19—C20 | −1.22 (16) |
N1—C6—C7—C8 | −103.65 (12) | C16—C15—C20—C19 | 0.58 (16) |
C12—C7—C8—C9 | 0.27 (16) | C14—C15—C20—C19 | −177.17 (10) |
C6—C7—C8—C9 | −177.37 (10) | C18—C19—C20—C15 | 0.38 (17) |
D—H···A | D—H | H···A | D···A | D—H···A |
C20—H20···O3i | 0.95 | 2.51 | 3.3627 (14) | 150 |
Symmetry code: (i) x+1/2, −y+1/2, z−1/2. |
Experimental details
Crystal data | |
Chemical formula | C21H22N2O4 |
Mr | 366.41 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 113 |
a, b, c (Å) | 8.4133 (9), 9.929 (1), 21.407 (3) |
β (°) | 91.614 (4) |
V (Å3) | 1787.5 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.26 × 0.24 × 0.22 |
Data collection | |
Diffractometer | Rigaku Saturn724 CCD diffractometer |
Absorption correction | Multi-scan (CrystalClear; Rigaku/MSC, 2009) |
Tmin, Tmax | 0.976, 0.979 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 17394, 4250, 3035 |
Rint | 0.037 |
(sin θ/λ)max (Å−1) | 0.658 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.096, 0.98 |
No. of reflections | 4250 |
No. of parameters | 247 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.16 |
Computer programs: CrystalClear (Rigaku/MSC, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), CrystalStructure (Rigaku/MSC, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C20—H20···O3i | 0.95 | 2.51 | 3.3627 (14) | 150.1 |
Symmetry code: (i) x+1/2, −y+1/2, z−1/2. |
Acknowledgements
This work was supported by the Program for New Century Excellent Talents at the University of Henan Province (No. 2005HANCET-17), the Natural Science Foundation of Henan Province, China (grant No. 082300420110) and the Natural Science Foundation of Henan Province Education Department, China (grant No. 2007150036).
References
Condon, M. E., Brady, T. E., Feist, D., Malefyt, T., Marc, P., Quakenbush, L. S., Rodaway, S. J., Shaner, D. L. & Tecle, B. (1993). Brighton Crop Protection Conference on Weeds, pp. 41–46. Alton, Hampshire, England: BCPC Publications. Google Scholar
Gilchrist, T. L. (1997). Heterocyclic Chemistry, 3rd ed., pp. 261–276. Singapore: Addison Wesley Longman. Google Scholar
Maeno, S., Miura, I., Masuda, K. & Nagata, T. (1990). Brighton Crop Protection Conference on Pests and Diseases, pp. 415–422. Alton, Hampshire, England: BCPC Publications. Google Scholar
Rigaku/MSC (2009). CrystalClear and CrystalStructure. Rigaku/MSC, The Woodlands, Texas, USA. Google Scholar
Selby, T. P., Drumm, J. E., Coats, R. A., Coppo, F. T., Gee, S. K., Hay, J. V., Pasteris, R. J. & Stevenson, T. M. (2002). ACS Symposium Series, Vol. 800, Synthesis and Chemistry of Agrochemicals VI, pp. 74–84. Washington DC: American Chemical Society. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Yang, F.-L. & Li, G.-C. (2006). Acta Cryst. E62, o3405–o3406. Web of Science CSD CrossRef IUCr Journals Google Scholar
Zhu, Y.-Q., Zou, X.-M., Li, G.-C., Yao, C.-S. & Yang, H.-Z. (2007). Chin. J. Org. Chem. 27, 753–757. CAS Google Scholar
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Pyrimidine derivatives are very important molecules in biology and have many applications in the areas of pesticide and pharmaceutical agents (Condon et al., 1993). For example, imazosulfuron, ethirmol and mepanipyrim have been commercialized as agrochemicals (Maeno et al., 1990). Pyrimidine derivatives have also been developed as antiviral agents, such as AZT, which is the most widely used anti-AIDS drug (Gilchrist, 1997). Recently, a new series of highly active herbicides of substituted pyrimidines were reported (Selby et al., 2002); (Zhu et al., 2007), and we have previously reported a related structure (Yang & Li 2006). As part of our goal to discover further biologically active pyrimidine compounds, the title compound was synthesized and its crystal structure determined (Fig. 1).
In the title molecule, the central pyrimidine ring forms dihedral angles of 62.16 (4) and 69.77 (3)° with the two benzene rings. In the crystal, weak intermolecular C—H···O hydrogen bonds link molecules.