organic compounds
9-(4-Hydroxy-3-methoxyphenyl)-3,3,6,6-tetramethyl-3,4,5,6-tetrahydro-9H-xanthene-1,8(2H,7H)-dione
aSchool of Pharmaceutical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the title compound, C24H28O5, the two cyclohexene rings adopt envelope conformations, and the planes through the coplanar atoms makes dihedral angles of 82.86 (6) and 77.90 (6)° with the benzene ring. The two cyclohexene rings make a dihedral angle of 5.33 (6)° between their least-squares planes. The pyran ring adopts a flattened boat conformation. In the crystal packing, molecules are linked into two-dimensional networks parallel to the ab plane via O—H⋯O and C—H⋯O interactions.
Related literature
For the synthesis of the title compound, see: Venkatesan et al. (2008). For general background to and the biological activity of xanthene derivatives, see: Hafez et al. (2008); Ashry et al. (2006); Sill & Sweet (1977); Ion (1997); Chibale et al. (2003). For reference bond lengths, see: Allen et al. (1987). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986). For ring conformations, see: Cremer & Pople (1975).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536810020258/rz2454sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810020258/rz2454Isup2.hkl
The synthesis of the title compound was performed according to the procedure described in the literature (Venkatesan et al., 2008). A mixture of vanilin (90 mg, 0.59 mmol), dimedone (160 mg, 1.14 mmol), p-toluenesulfonic acid (2 mg) in MeOH (4 ml) and water (2 ml) was heated to 50 °C in N2 atmosphere for about 20 min. Good quality crystals suitable for characterisation by X-ray crystallography were obtained by recrystallisation from hot methanol.
Atom H14O was located in a difference Fourier map and allowed to refine freely. All other hydrogen atoms were positioned geometrically and refined using a riding model, with C—H = 0.93–0.97 Å and Uiso(H) = 1.2 or 1.5 Ueq(C). A rotating-group model was applied for the methyl groups.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).C24H28O5 | F(000) = 1696 |
Mr = 396.46 | Dx = 1.284 Mg m−3 |
Orthorhombic, Pbca | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ac 2ab | Cell parameters from 5544 reflections |
a = 11.4861 (10) Å | θ = 2.2–31.4° |
b = 11.8659 (11) Å | µ = 0.09 mm−1 |
c = 30.087 (3) Å | T = 100 K |
V = 4100.6 (6) Å3 | Block, colourless |
Z = 8 | 0.35 × 0.30 × 0.24 mm |
Bruker APEXII DUO CCD area-detector diffractometer | 5972 independent reflections |
Radiation source: fine-focus sealed tube | 4634 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.046 |
ϕ and ω scans | θmax = 30.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −16→12 |
Tmin = 0.970, Tmax = 0.979 | k = −16→16 |
26584 measured reflections | l = −20→42 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.045 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.136 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0729P)2 + 0.8139P] where P = (Fo2 + 2Fc2)/3 |
5972 reflections | (Δ/σ)max = 0.001 |
271 parameters | Δρmax = 0.57 e Å−3 |
0 restraints | Δρmin = −0.38 e Å−3 |
C24H28O5 | V = 4100.6 (6) Å3 |
Mr = 396.46 | Z = 8 |
Orthorhombic, Pbca | Mo Kα radiation |
a = 11.4861 (10) Å | µ = 0.09 mm−1 |
b = 11.8659 (11) Å | T = 100 K |
c = 30.087 (3) Å | 0.35 × 0.30 × 0.24 mm |
Bruker APEXII DUO CCD area-detector diffractometer | 5972 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 4634 reflections with I > 2σ(I) |
Tmin = 0.970, Tmax = 0.979 | Rint = 0.046 |
26584 measured reflections |
R[F2 > 2σ(F2)] = 0.045 | 0 restraints |
wR(F2) = 0.136 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 0.57 e Å−3 |
5972 reflections | Δρmin = −0.38 e Å−3 |
271 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | −0.28861 (7) | 0.40281 (8) | 0.37337 (3) | 0.01617 (19) | |
O2 | 0.01386 (8) | 0.44676 (8) | 0.26832 (3) | 0.0228 (2) | |
O3 | −0.01627 (8) | 0.68315 (9) | 0.41472 (4) | 0.0257 (2) | |
O4 | 0.35090 (8) | 0.35573 (8) | 0.36534 (3) | 0.0207 (2) | |
O5 | 0.27890 (8) | 0.17322 (8) | 0.41056 (4) | 0.0225 (2) | |
C1 | −0.23302 (10) | 0.38185 (10) | 0.33355 (4) | 0.0146 (2) | |
C2 | −0.30172 (10) | 0.30335 (11) | 0.30502 (4) | 0.0170 (2) | |
H2A | −0.3616 | 0.3454 | 0.2895 | 0.020* | |
H2B | −0.3398 | 0.2477 | 0.3236 | 0.020* | |
C3 | −0.22358 (11) | 0.24318 (11) | 0.27099 (4) | 0.0190 (3) | |
C4 | −0.15068 (12) | 0.33410 (12) | 0.24770 (5) | 0.0215 (3) | |
H4A | −0.0983 | 0.2979 | 0.2268 | 0.026* | |
H4B | −0.2023 | 0.3826 | 0.2308 | 0.026* | |
C5 | −0.08000 (11) | 0.40592 (10) | 0.27917 (4) | 0.0171 (2) | |
C6 | −0.12984 (10) | 0.42841 (10) | 0.32340 (4) | 0.0142 (2) | |
C7 | −0.05937 (10) | 0.49443 (10) | 0.35702 (4) | 0.0142 (2) | |
H7A | −0.0228 | 0.5590 | 0.3423 | 0.017* | |
C8 | −0.14118 (10) | 0.53630 (10) | 0.39271 (4) | 0.0143 (2) | |
C9 | −0.10776 (11) | 0.63245 (11) | 0.42079 (4) | 0.0172 (2) | |
C10 | −0.19236 (11) | 0.67093 (11) | 0.45628 (5) | 0.0195 (3) | |
H10A | −0.2428 | 0.7283 | 0.4438 | 0.023* | |
H10B | −0.1487 | 0.7054 | 0.4803 | 0.023* | |
C11 | −0.26798 (11) | 0.57635 (11) | 0.47544 (4) | 0.0185 (3) | |
C12 | −0.32808 (11) | 0.51647 (11) | 0.43638 (4) | 0.0182 (3) | |
H12A | −0.3646 | 0.4479 | 0.4471 | 0.022* | |
H12B | −0.3888 | 0.5649 | 0.4247 | 0.022* | |
C13 | −0.24524 (10) | 0.48756 (10) | 0.39991 (4) | 0.0145 (2) | |
C14 | 0.03504 (10) | 0.41644 (10) | 0.37528 (4) | 0.0144 (2) | |
C15 | 0.15186 (10) | 0.43068 (10) | 0.36324 (4) | 0.0150 (2) | |
H15A | 0.1742 | 0.4937 | 0.3470 | 0.018* | |
C16 | 0.23459 (10) | 0.35118 (11) | 0.37548 (4) | 0.0154 (2) | |
C17 | 0.20159 (11) | 0.25532 (10) | 0.39955 (4) | 0.0163 (2) | |
C18 | 0.08671 (11) | 0.24362 (11) | 0.41294 (5) | 0.0192 (3) | |
H18A | 0.0648 | 0.1820 | 0.4301 | 0.023* | |
C19 | 0.00419 (11) | 0.32338 (11) | 0.40088 (5) | 0.0186 (3) | |
H19A | −0.0726 | 0.3146 | 0.4100 | 0.022* | |
C20 | −0.14395 (12) | 0.15751 (11) | 0.29401 (5) | 0.0253 (3) | |
H20A | −0.1906 | 0.1025 | 0.3092 | 0.038* | |
H20B | −0.0951 | 0.1957 | 0.3151 | 0.038* | |
H20C | −0.0963 | 0.1207 | 0.2722 | 0.038* | |
C21 | −0.29993 (13) | 0.18345 (13) | 0.23661 (5) | 0.0291 (3) | |
H21A | −0.3498 | 0.1304 | 0.2514 | 0.044* | |
H21B | −0.2513 | 0.1444 | 0.2157 | 0.044* | |
H21C | −0.3465 | 0.2381 | 0.2212 | 0.044* | |
C22 | −0.36133 (12) | 0.62585 (14) | 0.50611 (5) | 0.0282 (3) | |
H22A | −0.3246 | 0.6625 | 0.5308 | 0.042* | |
H22B | −0.4107 | 0.5664 | 0.5168 | 0.042* | |
H22C | −0.4072 | 0.6796 | 0.4899 | 0.042* | |
C23 | −0.19191 (13) | 0.49357 (13) | 0.50166 (5) | 0.0280 (3) | |
H23A | −0.1551 | 0.5324 | 0.5259 | 0.042* | |
H23B | −0.1334 | 0.4626 | 0.4824 | 0.042* | |
H23C | −0.2396 | 0.4338 | 0.5131 | 0.042* | |
C24 | 0.39966 (11) | 0.46439 (12) | 0.35714 (5) | 0.0238 (3) | |
H24A | 0.4831 | 0.4594 | 0.3577 | 0.036* | |
H24B | 0.3739 | 0.5160 | 0.3797 | 0.036* | |
H24C | 0.3748 | 0.4908 | 0.3285 | 0.036* | |
H14O | 0.3488 (19) | 0.1956 (19) | 0.4055 (8) | 0.047 (6)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0129 (4) | 0.0191 (4) | 0.0165 (4) | −0.0030 (3) | 0.0024 (3) | −0.0032 (3) |
O2 | 0.0224 (5) | 0.0237 (5) | 0.0223 (5) | −0.0030 (4) | 0.0075 (4) | 0.0022 (4) |
O3 | 0.0185 (5) | 0.0247 (5) | 0.0339 (6) | −0.0067 (4) | 0.0031 (4) | −0.0047 (4) |
O4 | 0.0105 (4) | 0.0246 (5) | 0.0272 (5) | 0.0030 (3) | 0.0023 (3) | 0.0053 (4) |
O5 | 0.0165 (5) | 0.0195 (5) | 0.0315 (5) | 0.0044 (4) | −0.0038 (4) | 0.0044 (4) |
C1 | 0.0140 (5) | 0.0146 (5) | 0.0152 (5) | 0.0022 (4) | 0.0005 (4) | 0.0006 (4) |
C2 | 0.0153 (5) | 0.0179 (5) | 0.0179 (6) | −0.0010 (4) | −0.0009 (4) | −0.0017 (5) |
C3 | 0.0214 (6) | 0.0169 (6) | 0.0187 (6) | −0.0027 (5) | 0.0022 (5) | −0.0026 (5) |
C4 | 0.0263 (7) | 0.0216 (6) | 0.0166 (6) | −0.0029 (5) | 0.0036 (5) | −0.0008 (5) |
C5 | 0.0205 (6) | 0.0143 (5) | 0.0166 (6) | 0.0021 (4) | 0.0024 (5) | 0.0028 (5) |
C6 | 0.0132 (5) | 0.0135 (5) | 0.0159 (5) | 0.0021 (4) | 0.0003 (4) | 0.0024 (4) |
C7 | 0.0106 (5) | 0.0146 (5) | 0.0173 (6) | 0.0004 (4) | 0.0012 (4) | 0.0017 (4) |
C8 | 0.0114 (5) | 0.0148 (5) | 0.0166 (5) | 0.0015 (4) | −0.0001 (4) | 0.0015 (4) |
C9 | 0.0144 (5) | 0.0166 (5) | 0.0206 (6) | 0.0004 (4) | −0.0021 (5) | 0.0007 (5) |
C10 | 0.0165 (6) | 0.0202 (6) | 0.0219 (6) | −0.0002 (5) | −0.0008 (5) | −0.0049 (5) |
C11 | 0.0155 (5) | 0.0237 (6) | 0.0163 (6) | −0.0008 (5) | 0.0010 (5) | −0.0023 (5) |
C12 | 0.0127 (5) | 0.0229 (6) | 0.0191 (6) | −0.0005 (4) | 0.0017 (4) | −0.0036 (5) |
C13 | 0.0119 (5) | 0.0161 (5) | 0.0156 (5) | 0.0006 (4) | −0.0011 (4) | −0.0001 (5) |
C14 | 0.0116 (5) | 0.0152 (5) | 0.0164 (5) | 0.0014 (4) | −0.0005 (4) | −0.0004 (4) |
C15 | 0.0129 (5) | 0.0156 (5) | 0.0164 (5) | −0.0004 (4) | 0.0002 (4) | 0.0008 (4) |
C16 | 0.0112 (5) | 0.0199 (6) | 0.0151 (5) | 0.0013 (4) | −0.0007 (4) | −0.0016 (5) |
C17 | 0.0141 (5) | 0.0177 (6) | 0.0171 (6) | 0.0026 (4) | −0.0031 (4) | −0.0001 (5) |
C18 | 0.0169 (6) | 0.0173 (6) | 0.0235 (6) | −0.0005 (4) | −0.0003 (5) | 0.0043 (5) |
C19 | 0.0130 (5) | 0.0193 (6) | 0.0235 (6) | −0.0002 (4) | 0.0016 (5) | 0.0028 (5) |
C20 | 0.0260 (7) | 0.0145 (6) | 0.0354 (8) | 0.0013 (5) | 0.0065 (6) | 0.0001 (6) |
C21 | 0.0334 (8) | 0.0288 (7) | 0.0252 (7) | −0.0090 (6) | 0.0034 (6) | −0.0102 (6) |
C22 | 0.0221 (7) | 0.0409 (8) | 0.0216 (7) | −0.0028 (6) | 0.0033 (5) | −0.0115 (6) |
C23 | 0.0301 (7) | 0.0339 (8) | 0.0200 (7) | 0.0016 (6) | −0.0021 (6) | 0.0045 (6) |
C24 | 0.0143 (6) | 0.0272 (7) | 0.0298 (7) | −0.0045 (5) | 0.0002 (5) | −0.0047 (6) |
O1—C13 | 1.3772 (15) | C11—C22 | 1.5317 (18) |
O1—C1 | 1.3802 (14) | C11—C23 | 1.5333 (19) |
O2—C5 | 1.2263 (15) | C11—C12 | 1.5370 (18) |
O3—C9 | 1.2246 (15) | C12—C13 | 1.4922 (17) |
O4—C16 | 1.3714 (15) | C12—H12A | 0.9700 |
O4—C24 | 1.4272 (17) | C12—H12B | 0.9700 |
O5—C17 | 1.3591 (15) | C14—C19 | 1.3922 (18) |
O5—H14O | 0.86 (2) | C14—C15 | 1.4001 (16) |
C1—C6 | 1.3427 (17) | C15—C16 | 1.3886 (17) |
C1—C2 | 1.4924 (17) | C15—H15A | 0.9300 |
C2—C3 | 1.5372 (18) | C16—C17 | 1.4007 (18) |
C2—H2A | 0.9700 | C17—C18 | 1.3867 (18) |
C2—H2B | 0.9700 | C18—C19 | 1.3877 (18) |
C3—C21 | 1.5301 (19) | C18—H18A | 0.9300 |
C3—C20 | 1.5329 (19) | C19—H19A | 0.9300 |
C3—C4 | 1.5350 (18) | C20—H20A | 0.9600 |
C4—C5 | 1.5106 (19) | C20—H20B | 0.9600 |
C4—H4A | 0.9700 | C20—H20C | 0.9600 |
C4—H4B | 0.9700 | C21—H21A | 0.9600 |
C5—C6 | 1.4730 (17) | C21—H21B | 0.9600 |
C6—C7 | 1.5140 (17) | C21—H21C | 0.9600 |
C7—C8 | 1.5108 (17) | C22—H22A | 0.9600 |
C7—C14 | 1.5278 (16) | C22—H22B | 0.9600 |
C7—H7A | 0.9800 | C22—H22C | 0.9600 |
C8—C13 | 1.3454 (16) | C23—H23A | 0.9600 |
C8—C9 | 1.4706 (17) | C23—H23B | 0.9600 |
C9—C10 | 1.5143 (18) | C23—H23C | 0.9600 |
C10—C11 | 1.5317 (18) | C24—H24A | 0.9600 |
C10—H10A | 0.9700 | C24—H24B | 0.9600 |
C10—H10B | 0.9700 | C24—H24C | 0.9600 |
C13—O1—C1 | 117.88 (9) | C11—C12—H12A | 109.1 |
C16—O4—C24 | 117.15 (10) | C13—C12—H12B | 109.1 |
C17—O5—H14O | 110.3 (15) | C11—C12—H12B | 109.1 |
C6—C1—O1 | 122.11 (11) | H12A—C12—H12B | 107.8 |
C6—C1—C2 | 126.34 (11) | C8—C13—O1 | 122.80 (11) |
O1—C1—C2 | 111.55 (10) | C8—C13—C12 | 125.88 (11) |
C1—C2—C3 | 111.36 (10) | O1—C13—C12 | 111.32 (10) |
C1—C2—H2A | 109.4 | C19—C14—C15 | 118.86 (11) |
C3—C2—H2A | 109.4 | C19—C14—C7 | 119.92 (10) |
C1—C2—H2B | 109.4 | C15—C14—C7 | 120.94 (11) |
C3—C2—H2B | 109.4 | C16—C15—C14 | 120.35 (12) |
H2A—C2—H2B | 108.0 | C16—C15—H15A | 119.8 |
C21—C3—C20 | 109.88 (12) | C14—C15—H15A | 119.8 |
C21—C3—C4 | 109.24 (11) | O4—C16—C15 | 125.52 (12) |
C20—C3—C4 | 110.30 (11) | O4—C16—C17 | 114.24 (11) |
C21—C3—C2 | 109.31 (11) | C15—C16—C17 | 120.23 (11) |
C20—C3—C2 | 110.83 (11) | O5—C17—C18 | 118.62 (12) |
C4—C3—C2 | 107.22 (10) | O5—C17—C16 | 122.09 (11) |
C5—C4—C3 | 113.79 (11) | C18—C17—C16 | 119.28 (11) |
C5—C4—H4A | 108.8 | C17—C18—C19 | 120.37 (12) |
C3—C4—H4A | 108.8 | C17—C18—H18A | 119.8 |
C5—C4—H4B | 108.8 | C19—C18—H18A | 119.8 |
C3—C4—H4B | 108.8 | C18—C19—C14 | 120.78 (12) |
H4A—C4—H4B | 107.7 | C18—C19—H19A | 119.6 |
O2—C5—C6 | 120.71 (12) | C14—C19—H19A | 119.6 |
O2—C5—C4 | 121.91 (12) | C3—C20—H20A | 109.5 |
C6—C5—C4 | 117.36 (11) | C3—C20—H20B | 109.5 |
C1—C6—C5 | 118.29 (11) | H20A—C20—H20B | 109.5 |
C1—C6—C7 | 122.20 (11) | C3—C20—H20C | 109.5 |
C5—C6—C7 | 119.31 (10) | H20A—C20—H20C | 109.5 |
C8—C7—C6 | 108.21 (10) | H20B—C20—H20C | 109.5 |
C8—C7—C14 | 112.65 (10) | C3—C21—H21A | 109.5 |
C6—C7—C14 | 107.84 (10) | C3—C21—H21B | 109.5 |
C8—C7—H7A | 109.4 | H21A—C21—H21B | 109.5 |
C6—C7—H7A | 109.4 | C3—C21—H21C | 109.5 |
C14—C7—H7A | 109.4 | H21A—C21—H21C | 109.5 |
C13—C8—C9 | 118.22 (11) | H21B—C21—H21C | 109.5 |
C13—C8—C7 | 121.72 (11) | C11—C22—H22A | 109.5 |
C9—C8—C7 | 120.07 (10) | C11—C22—H22B | 109.5 |
O3—C9—C8 | 121.30 (12) | H22A—C22—H22B | 109.5 |
O3—C9—C10 | 120.51 (12) | C11—C22—H22C | 109.5 |
C8—C9—C10 | 118.14 (11) | H22A—C22—H22C | 109.5 |
C9—C10—C11 | 114.09 (11) | H22B—C22—H22C | 109.5 |
C9—C10—H10A | 108.7 | C11—C23—H23A | 109.5 |
C11—C10—H10A | 108.7 | C11—C23—H23B | 109.5 |
C9—C10—H10B | 108.7 | H23A—C23—H23B | 109.5 |
C11—C10—H10B | 108.7 | C11—C23—H23C | 109.5 |
H10A—C10—H10B | 107.6 | H23A—C23—H23C | 109.5 |
C22—C11—C10 | 110.04 (11) | H23B—C23—H23C | 109.5 |
C22—C11—C23 | 109.54 (12) | O4—C24—H24A | 109.5 |
C10—C11—C23 | 109.87 (11) | O4—C24—H24B | 109.5 |
C22—C11—C12 | 108.88 (10) | H24A—C24—H24B | 109.5 |
C10—C11—C12 | 107.80 (11) | O4—C24—H24C | 109.5 |
C23—C11—C12 | 110.68 (11) | H24A—C24—H24C | 109.5 |
C13—C12—C11 | 112.46 (10) | H24B—C24—H24C | 109.5 |
C13—C12—H12A | 109.1 | ||
C13—O1—C1—C6 | 10.47 (17) | C9—C10—C11—C22 | −172.25 (11) |
C13—O1—C1—C2 | −169.61 (10) | C9—C10—C11—C23 | 67.06 (14) |
C6—C1—C2—C3 | 22.80 (18) | C9—C10—C11—C12 | −53.64 (14) |
O1—C1—C2—C3 | −157.11 (10) | C22—C11—C12—C13 | 167.54 (12) |
C1—C2—C3—C21 | −168.27 (11) | C10—C11—C12—C13 | 48.19 (14) |
C1—C2—C3—C20 | 70.47 (13) | C23—C11—C12—C13 | −71.99 (14) |
C1—C2—C3—C4 | −49.96 (14) | C9—C8—C13—O1 | 174.91 (11) |
C21—C3—C4—C5 | 174.64 (12) | C7—C8—C13—O1 | −5.31 (18) |
C20—C3—C4—C5 | −64.49 (15) | C9—C8—C13—C12 | −4.82 (19) |
C2—C3—C4—C5 | 56.29 (14) | C7—C8—C13—C12 | 174.95 (12) |
C3—C4—C5—O2 | 148.98 (12) | C1—O1—C13—C8 | −12.05 (17) |
C3—C4—C5—C6 | −32.87 (16) | C1—O1—C13—C12 | 167.72 (10) |
O1—C1—C6—C5 | −176.84 (10) | C11—C12—C13—C8 | −21.12 (18) |
C2—C1—C6—C5 | 3.25 (18) | C11—C12—C13—O1 | 159.11 (10) |
O1—C1—C6—C7 | 8.37 (18) | C8—C7—C14—C19 | 52.88 (15) |
C2—C1—C6—C7 | −171.54 (11) | C6—C7—C14—C19 | −66.46 (15) |
O2—C5—C6—C1 | 179.82 (11) | C8—C7—C14—C15 | −133.24 (12) |
C4—C5—C6—C1 | 1.65 (17) | C6—C7—C14—C15 | 107.43 (13) |
O2—C5—C6—C7 | −5.23 (17) | C19—C14—C15—C16 | 2.08 (19) |
C4—C5—C6—C7 | 176.59 (11) | C7—C14—C15—C16 | −171.87 (11) |
C1—C6—C7—C8 | −22.67 (15) | C24—O4—C16—C15 | 25.08 (18) |
C5—C6—C7—C8 | 162.59 (10) | C24—O4—C16—C17 | −156.10 (12) |
C1—C6—C7—C14 | 99.45 (13) | C14—C15—C16—O4 | 179.50 (12) |
C5—C6—C7—C14 | −75.29 (13) | C14—C15—C16—C17 | 0.74 (19) |
C6—C7—C8—C13 | 21.08 (15) | O4—C16—C17—O5 | −1.71 (18) |
C14—C7—C8—C13 | −98.04 (13) | C15—C16—C17—O5 | 177.18 (12) |
C6—C7—C8—C9 | −159.15 (11) | O4—C16—C17—C18 | 177.85 (12) |
C14—C7—C8—C9 | 81.73 (14) | C15—C16—C17—C18 | −3.26 (19) |
C13—C8—C9—O3 | −177.09 (12) | O5—C17—C18—C19 | −177.48 (12) |
C7—C8—C9—O3 | 3.13 (18) | C16—C17—C18—C19 | 3.0 (2) |
C13—C8—C9—C10 | 0.12 (17) | C17—C18—C19—C14 | −0.1 (2) |
C7—C8—C9—C10 | −179.65 (11) | C15—C14—C19—C18 | −2.4 (2) |
O3—C9—C10—C11 | −152.16 (12) | C7—C14—C19—C18 | 171.61 (12) |
C8—C9—C10—C11 | 30.60 (16) |
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H14O···O3i | 0.86 (2) | 1.95 (2) | 2.7319 (13) | 151 (2) |
C2—H2A···O2ii | 0.97 | 2.55 | 3.5003 (16) | 165 |
C20—H20C···O2iii | 0.96 | 2.58 | 3.4646 (17) | 154 |
Symmetry codes: (i) −x+1/2, y−1/2, z; (ii) x−1/2, y, −z+1/2; (iii) −x, y−1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C24H28O5 |
Mr | 396.46 |
Crystal system, space group | Orthorhombic, Pbca |
Temperature (K) | 100 |
a, b, c (Å) | 11.4861 (10), 11.8659 (11), 30.087 (3) |
V (Å3) | 4100.6 (6) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.35 × 0.30 × 0.24 |
Data collection | |
Diffractometer | Bruker APEXII DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.970, 0.979 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 26584, 5972, 4634 |
Rint | 0.046 |
(sin θ/λ)max (Å−1) | 0.703 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.045, 0.136, 1.06 |
No. of reflections | 5972 |
No. of parameters | 271 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.57, −0.38 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O5—H14O···O3i | 0.86 (2) | 1.95 (2) | 2.7319 (13) | 151 (2) |
C2—H2A···O2ii | 0.9700 | 2.5500 | 3.5003 (16) | 165.00 |
C20—H20C···O2iii | 0.9600 | 2.5800 | 3.4646 (17) | 154.00 |
Symmetry codes: (i) −x+1/2, y−1/2, z; (ii) x−1/2, y, −z+1/2; (iii) −x, y−1/2, −z+1/2. |
Acknowledgements
NH, ASAR and NM are grateful to Universiti Sains Malaysia (USM) for funding the synthetic chemistry work under the University Research Grant (1001/PFARMASI/815026). HKF and CKQ thank USM for the Research University Golden Goose Grant (1001/PFIZIK/811012). CKQ also thanks USM for the award of USM Fellowship.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Xanthene derivatives especially benzoxanthenes are well-known in organic synthesis due to their biologically active properties such as anti-inflammatory (Hafez et al., 2008), antimicrobial (Ashry et al., 2006), antiviral (Sill & Sweet, 1977) activities and as well as being used in photodynamic therapy (Ion, 1997). Molecules based on the 9,9-dimethylxanthene moiety have inhibitory activity towards trypanothione reductase (TryR) (Chibale et al., 2003). In view of its importance in this field, the crystal structure of the title compound was determined and the results are presented here.
The bond lengths (Allen et al., 1987) and angles in the title compound (Fig. 1) are within normal ranges. The two cyclohexene rings, C1—C6 and C8—C13, adopt an envelope conformation, and the plane through the coplanar atoms makes dihedral angles of 82.86 (6)° and 77.90 (6)°, respectively, with the benzene ring (C14—C19). The puckering parameters (Cremer & Pople, 1975) are Q = 0.4872 (14) Å, Θ = 125.01 (16)° and ϕ = 307.7 (2)° for the C1—C6 ring, Q = 0.4698 (14) Å, Θ = 56.48 (17)° and ϕ = 172.6 (2) ° for the C8—C13 ring. The two cyclohexene rings make a dihedral angle of 5.33 (6)° between their least-squares planes. The pyran ring (O1/C1/C6—C8/C13) adopts a flattened boat conformation with atoms C7 and O1 deviating by 0.150 (1) and 0.111 (1) Å, respectively, from the base of the boat.
In the crystal packing (Fig. 2), the molecules are linked into two-dimensional networks parallel to the ab plane via O5–H14O···O3, C2–H2A···O2 and C20–H20C···O2 interactions (Table 1).