organic compounds
16-[(E)-Benzylidene]-13-hydroxy-4-methyl-2-phenyl-4,14-diazapentacyclo-[12.3.1.01,5.05,13.07,12]octadeca-7(12),8,10-triene-6,17-dione
aSchool of Chemical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, bInstitute for Research in Molecular Medicine, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and cX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
In the title compound, C30H26N2O3, the two pyrrolidine rings adopt twisted and envelope conformations, whereas the cyclopentane ring adopts an The least-squares planes through the pyrrolidine rings form a dihedral angle of 41.72 (10)°. The molecular structure is stabilized by an intramolecular O—H⋯N hydrogen bond, which generates an S(5) ring motif. Centrosymmetrically related molecules are linked via two pairs of intermolecular C—H⋯O interactions, forming R22(16) ring motifs. In the crystal packing, the molecules are linked into two-dimensional networks parallel to the ab plane via C—H⋯O interactions.
Related literature
For general background to and the biological activity of pyrrolidine derivatives, see: Gothelf & Jørgensen (1998); Gu et al. (2004); Horri et al. (1986); Tsukamoto et al. (1989); Karpas et al. (1988). For the biological activity of heterocycles with piperidine sub-structures, see: El-Subbagh et al. (2000); Dimmock et al. (2001); Lee et al. (2001). For reference bond lengths, see: Allen et al. (1987). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986). For hydrogen-bond motifs, see: Bernstein et al. (1995). For ring conformations, see: Cremer & Pople (1975).
Experimental
Crystal data
|
Refinement
|
Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
10.1107/S1600536810020271/rz2455sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810020271/rz2455Isup2.hkl
A mixture of 3,5-bis[(E)-benzylidene]tetrahydro-4(1H)-pyridinone (0.100 g, 0.364 mmol), ninhydrin (0.065 g, 0.364 mmol) and sarcosine (0.032 g, 0.364 mmol) were dissolved in methanol (10 ml) and refluxed for 1 h. After completion of the reaction as evident from TLC, the mixture was poured into water (50 ml). The precipitated solid was filtered and washed with water to obtain the product which was recrystallised from ethyl acetate to give the title compound as yellow crystals.
All H atoms were located in a difference Fourier map and refined freely. The highest residual electron density peak is located at 1.10 Å from H22A and the deepest hole is located at 0.65 Å from C22.
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title compound, showing 50% probability displacement ellipsoids for non-H atoms and the atom-numbering scheme. Intramolecular hydrogen interaction is shown as dashed line. | |
Fig. 2. The crystal structure of the title compound viewed along the a axis. H atoms not involved in intermolecular interactions (dashed lines) have been omitted for clarity. |
C30H26N2O3 | Z = 2 |
Mr = 462.53 | F(000) = 488 |
Triclinic, P1 | Dx = 1.344 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.0333 (5) Å | Cell parameters from 9987 reflections |
b = 9.4222 (5) Å | θ = 2.8–35.8° |
c = 14.0290 (7) Å | µ = 0.09 mm−1 |
α = 80.943 (2)° | T = 100 K |
β = 78.034 (1)° | Plate, yellow |
γ = 80.578 (1)° | 0.51 × 0.39 × 0.10 mm |
V = 1142.88 (10) Å3 |
Bruker APEXII DUO CCD area-detector diffractometer | 4213 independent reflections |
Radiation source: fine-focus sealed tube | 3812 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
ϕ and ω scans | θmax = 25.5°, θmin = 1.5° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −10→10 |
Tmin = 0.957, Tmax = 0.991 | k = −11→11 |
21768 measured reflections | l = −16→16 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.043 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.130 | All H-atom parameters refined |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0728P)2 + 0.7251P] where P = (Fo2 + 2Fc2)/3 |
4213 reflections | (Δ/σ)max = 0.001 |
420 parameters | Δρmax = 0.58 e Å−3 |
0 restraints | Δρmin = −0.29 e Å−3 |
C30H26N2O3 | γ = 80.578 (1)° |
Mr = 462.53 | V = 1142.88 (10) Å3 |
Triclinic, P1 | Z = 2 |
a = 9.0333 (5) Å | Mo Kα radiation |
b = 9.4222 (5) Å | µ = 0.09 mm−1 |
c = 14.0290 (7) Å | T = 100 K |
α = 80.943 (2)° | 0.51 × 0.39 × 0.10 mm |
β = 78.034 (1)° |
Bruker APEXII DUO CCD area-detector diffractometer | 4213 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 3812 reflections with I > 2σ(I) |
Tmin = 0.957, Tmax = 0.991 | Rint = 0.026 |
21768 measured reflections |
R[F2 > 2σ(F2)] = 0.043 | 0 restraints |
wR(F2) = 0.130 | All H-atom parameters refined |
S = 1.06 | Δρmax = 0.58 e Å−3 |
4213 reflections | Δρmin = −0.29 e Å−3 |
420 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cyrosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.82023 (14) | 0.80718 (12) | 0.24270 (9) | 0.0260 (3) | |
O2 | 0.64023 (14) | 0.37335 (13) | 0.07491 (8) | 0.0233 (3) | |
O3 | 0.49620 (13) | 0.63815 (12) | 0.34310 (8) | 0.0233 (3) | |
N1 | 0.85499 (15) | 0.43423 (14) | 0.12050 (9) | 0.0178 (3) | |
N2 | 0.48231 (16) | 0.62423 (16) | 0.12640 (10) | 0.0245 (3) | |
C1 | 0.8502 (2) | 0.36212 (19) | 0.51299 (12) | 0.0239 (4) | |
C2 | 0.8939 (2) | 0.23665 (19) | 0.57195 (13) | 0.0277 (4) | |
C3 | 1.0315 (2) | 0.15119 (19) | 0.54275 (13) | 0.0260 (4) | |
C4 | 1.1253 (2) | 0.19167 (19) | 0.45416 (13) | 0.0253 (4) | |
C5 | 1.0797 (2) | 0.31676 (19) | 0.39408 (12) | 0.0242 (4) | |
C6 | 0.94117 (19) | 0.40277 (17) | 0.42240 (12) | 0.0208 (3) | |
C7 | 0.88836 (18) | 0.53511 (17) | 0.36091 (12) | 0.0205 (3) | |
C8 | 0.94062 (18) | 0.42773 (17) | 0.19982 (11) | 0.0185 (3) | |
C9 | 0.88818 (17) | 0.55001 (16) | 0.26407 (12) | 0.0184 (3) | |
C10 | 0.81293 (18) | 0.69051 (16) | 0.21854 (11) | 0.0186 (3) | |
C11 | 0.72678 (18) | 0.67304 (16) | 0.13952 (11) | 0.0184 (3) | |
C12 | 0.84420 (18) | 0.58165 (16) | 0.06730 (11) | 0.0190 (3) | |
C13 | 0.60692 (17) | 0.56650 (16) | 0.18033 (11) | 0.0171 (3) | |
C14 | 0.69153 (18) | 0.41489 (16) | 0.15331 (11) | 0.0181 (3) | |
C15 | 0.65722 (18) | 0.31123 (17) | 0.24635 (11) | 0.0187 (3) | |
C16 | 0.69109 (19) | 0.16143 (17) | 0.25931 (13) | 0.0229 (4) | |
C17 | 0.6500 (2) | 0.08829 (18) | 0.35298 (13) | 0.0260 (4) | |
C18 | 0.5782 (2) | 0.16322 (19) | 0.43228 (13) | 0.0263 (4) | |
C19 | 0.54172 (19) | 0.31276 (18) | 0.41913 (12) | 0.0229 (4) | |
C20 | 0.58088 (18) | 0.38532 (16) | 0.32502 (11) | 0.0182 (3) | |
C21 | 0.55375 (17) | 0.54298 (17) | 0.29254 (11) | 0.0174 (3) | |
C22 | 0.4708 (2) | 0.78239 (19) | 0.11858 (14) | 0.0287 (4) | |
C23 | 0.63604 (19) | 0.81395 (18) | 0.09578 (12) | 0.0215 (3) | |
C24 | 0.70024 (18) | 0.86012 (16) | −0.01149 (12) | 0.0198 (3) | |
C25 | 0.8288 (2) | 0.93160 (19) | −0.03534 (13) | 0.0259 (4) | |
C26 | 0.8949 (2) | 0.97029 (19) | −0.13279 (14) | 0.0283 (4) | |
C27 | 0.8334 (2) | 0.93817 (18) | −0.20774 (13) | 0.0275 (4) | |
C28 | 0.7038 (2) | 0.86923 (19) | −0.18502 (13) | 0.0271 (4) | |
C29 | 0.6380 (2) | 0.83022 (17) | −0.08779 (12) | 0.0231 (4) | |
C30 | 0.3337 (2) | 0.5723 (2) | 0.16840 (14) | 0.0283 (4) | |
H1A | 0.751 (2) | 0.424 (2) | 0.5344 (14) | 0.027 (5)* | |
H2A | 0.824 (3) | 0.207 (2) | 0.6373 (17) | 0.035 (6)* | |
H3A | 1.062 (3) | 0.062 (2) | 0.5834 (16) | 0.035 (6)* | |
H4A | 1.217 (3) | 0.135 (2) | 0.4338 (15) | 0.027 (5)* | |
H5A | 1.147 (2) | 0.344 (2) | 0.3286 (16) | 0.030 (5)* | |
H7A | 0.839 (2) | 0.624 (2) | 0.3991 (15) | 0.031 (5)* | |
H8A | 0.936 (2) | 0.335 (2) | 0.2384 (14) | 0.023 (5)* | |
H8B | 1.052 (2) | 0.431 (2) | 0.1686 (14) | 0.022 (5)* | |
H12A | 0.945 (2) | 0.616 (2) | 0.0488 (13) | 0.019 (4)* | |
H12B | 0.802 (2) | 0.5839 (19) | 0.0082 (14) | 0.017 (4)* | |
H16A | 0.742 (2) | 0.114 (2) | 0.2045 (14) | 0.019 (4)* | |
H17A | 0.674 (2) | −0.016 (2) | 0.3623 (15) | 0.031 (5)* | |
H18A | 0.557 (2) | 0.110 (2) | 0.4966 (16) | 0.031 (5)* | |
H19A | 0.489 (2) | 0.366 (2) | 0.4725 (15) | 0.024 (5)* | |
H22A | 0.406 (3) | 0.812 (3) | 0.1827 (18) | 0.045 (6)* | |
H22B | 0.407 (2) | 0.828 (2) | 0.0667 (15) | 0.027 (5)* | |
H23A | 0.643 (2) | 0.891 (2) | 0.1339 (15) | 0.028 (5)* | |
H25A | 0.862 (2) | 0.959 (2) | 0.0191 (16) | 0.032 (5)* | |
H26A | 0.983 (3) | 1.023 (2) | −0.1492 (15) | 0.033 (5)* | |
H27A | 0.879 (3) | 0.966 (2) | −0.2779 (17) | 0.035 (6)* | |
H28A | 0.653 (3) | 0.851 (2) | −0.2365 (17) | 0.041 (6)* | |
H29A | 0.549 (3) | 0.782 (2) | −0.0749 (16) | 0.035 (5)* | |
H30A | 0.260 (2) | 0.616 (2) | 0.1267 (16) | 0.031 (5)* | |
H30B | 0.284 (2) | 0.607 (2) | 0.2355 (16) | 0.029 (5)* | |
H30C | 0.347 (2) | 0.457 (2) | 0.1750 (15) | 0.031 (5)* | |
H12O | 0.589 (3) | 0.446 (3) | 0.0529 (18) | 0.043 (7)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0343 (7) | 0.0153 (6) | 0.0296 (6) | −0.0057 (5) | −0.0063 (5) | −0.0034 (5) |
O2 | 0.0284 (6) | 0.0247 (6) | 0.0191 (6) | −0.0035 (5) | −0.0075 (5) | −0.0057 (5) |
O3 | 0.0265 (6) | 0.0194 (6) | 0.0213 (6) | −0.0018 (5) | 0.0029 (5) | −0.0055 (5) |
N1 | 0.0205 (7) | 0.0159 (6) | 0.0154 (6) | −0.0033 (5) | 0.0004 (5) | −0.0011 (5) |
N2 | 0.0205 (7) | 0.0265 (7) | 0.0235 (7) | 0.0010 (6) | −0.0038 (6) | 0.0006 (6) |
C1 | 0.0257 (9) | 0.0246 (8) | 0.0222 (8) | −0.0046 (7) | −0.0046 (7) | −0.0039 (7) |
C2 | 0.0320 (9) | 0.0276 (9) | 0.0235 (9) | −0.0087 (7) | −0.0043 (7) | 0.0005 (7) |
C3 | 0.0333 (10) | 0.0214 (8) | 0.0250 (9) | −0.0047 (7) | −0.0111 (7) | 0.0004 (7) |
C4 | 0.0253 (9) | 0.0241 (8) | 0.0270 (9) | −0.0007 (7) | −0.0070 (7) | −0.0052 (7) |
C5 | 0.0256 (9) | 0.0252 (8) | 0.0224 (8) | −0.0059 (7) | −0.0038 (7) | −0.0033 (7) |
C6 | 0.0253 (8) | 0.0195 (8) | 0.0204 (8) | −0.0073 (6) | −0.0061 (6) | −0.0038 (6) |
C7 | 0.0221 (8) | 0.0176 (8) | 0.0233 (8) | −0.0057 (6) | −0.0049 (6) | −0.0033 (6) |
C8 | 0.0192 (8) | 0.0153 (7) | 0.0196 (8) | −0.0025 (6) | −0.0009 (6) | −0.0015 (6) |
C9 | 0.0179 (7) | 0.0153 (7) | 0.0226 (8) | −0.0055 (6) | −0.0027 (6) | −0.0022 (6) |
C10 | 0.0189 (8) | 0.0163 (7) | 0.0184 (7) | −0.0054 (6) | 0.0031 (6) | −0.0010 (6) |
C11 | 0.0221 (8) | 0.0147 (7) | 0.0158 (7) | −0.0039 (6) | 0.0011 (6) | 0.0014 (6) |
C12 | 0.0211 (8) | 0.0160 (7) | 0.0176 (8) | −0.0022 (6) | 0.0007 (6) | −0.0006 (6) |
C13 | 0.0191 (8) | 0.0154 (7) | 0.0154 (7) | −0.0026 (6) | −0.0014 (6) | −0.0001 (6) |
C14 | 0.0218 (8) | 0.0171 (7) | 0.0154 (7) | −0.0030 (6) | −0.0023 (6) | −0.0033 (6) |
C15 | 0.0191 (8) | 0.0174 (8) | 0.0202 (8) | −0.0053 (6) | −0.0039 (6) | −0.0010 (6) |
C16 | 0.0255 (8) | 0.0180 (8) | 0.0260 (9) | −0.0049 (6) | −0.0044 (7) | −0.0035 (7) |
C17 | 0.0298 (9) | 0.0154 (8) | 0.0321 (9) | −0.0072 (7) | −0.0064 (7) | 0.0036 (7) |
C18 | 0.0321 (9) | 0.0231 (8) | 0.0224 (8) | −0.0109 (7) | −0.0041 (7) | 0.0071 (7) |
C19 | 0.0259 (8) | 0.0237 (8) | 0.0188 (8) | −0.0094 (7) | −0.0009 (6) | 0.0002 (6) |
C20 | 0.0201 (8) | 0.0169 (8) | 0.0182 (8) | −0.0067 (6) | −0.0029 (6) | −0.0008 (6) |
C21 | 0.0168 (7) | 0.0182 (8) | 0.0162 (7) | −0.0049 (6) | 0.0007 (6) | −0.0016 (6) |
C22 | 0.0250 (9) | 0.0254 (9) | 0.0292 (9) | 0.0006 (7) | 0.0008 (7) | 0.0042 (7) |
C23 | 0.0228 (8) | 0.0185 (8) | 0.0197 (8) | −0.0003 (6) | −0.0011 (6) | 0.0015 (6) |
C24 | 0.0205 (8) | 0.0136 (7) | 0.0216 (8) | 0.0006 (6) | −0.0017 (6) | 0.0033 (6) |
C25 | 0.0234 (9) | 0.0254 (9) | 0.0283 (9) | −0.0049 (7) | −0.0070 (7) | 0.0031 (7) |
C26 | 0.0214 (9) | 0.0253 (9) | 0.0331 (10) | −0.0051 (7) | 0.0010 (7) | 0.0053 (7) |
C27 | 0.0308 (9) | 0.0203 (8) | 0.0236 (9) | 0.0016 (7) | 0.0034 (7) | 0.0048 (7) |
C28 | 0.0335 (10) | 0.0222 (8) | 0.0241 (9) | 0.0000 (7) | −0.0051 (7) | −0.0025 (7) |
C29 | 0.0253 (9) | 0.0156 (7) | 0.0271 (9) | −0.0045 (6) | −0.0029 (7) | −0.0002 (6) |
C30 | 0.0240 (9) | 0.0318 (10) | 0.0275 (9) | −0.0061 (7) | −0.0032 (7) | 0.0012 (7) |
O1—C10 | 1.2158 (19) | C13—C21 | 1.539 (2) |
O2—C14 | 1.4085 (19) | C13—C14 | 1.569 (2) |
O2—H12O | 0.82 (3) | C14—C15 | 1.511 (2) |
O3—C21 | 1.2134 (19) | C15—C16 | 1.386 (2) |
N1—C12 | 1.4682 (19) | C15—C20 | 1.397 (2) |
N1—C8 | 1.470 (2) | C16—C17 | 1.391 (2) |
N1—C14 | 1.485 (2) | C16—H16A | 0.948 (19) |
N2—C22 | 1.465 (2) | C17—C18 | 1.398 (3) |
N2—C13 | 1.469 (2) | C17—H17A | 0.96 (2) |
N2—C30 | 1.478 (2) | C18—C19 | 1.385 (2) |
C1—C2 | 1.383 (2) | C18—H18A | 0.96 (2) |
C1—C6 | 1.398 (2) | C19—C20 | 1.392 (2) |
C1—H1A | 1.01 (2) | C19—H19A | 0.97 (2) |
C2—C3 | 1.388 (3) | C20—C21 | 1.479 (2) |
C2—H2A | 1.03 (2) | C22—C23 | 1.528 (2) |
C3—C4 | 1.388 (3) | C22—H22A | 1.02 (2) |
C3—H3A | 0.97 (2) | C22—H22B | 1.02 (2) |
C4—C5 | 1.393 (2) | C23—C24 | 1.518 (2) |
C4—H4A | 0.93 (2) | C23—H23A | 0.98 (2) |
C5—C6 | 1.394 (2) | C24—C25 | 1.392 (2) |
C5—H5A | 1.01 (2) | C24—C29 | 1.392 (2) |
C6—C7 | 1.471 (2) | C25—C26 | 1.391 (3) |
C7—C9 | 1.344 (2) | C25—H25A | 0.96 (2) |
C7—H7A | 1.05 (2) | C26—C27 | 1.380 (3) |
C8—C9 | 1.528 (2) | C26—H26A | 0.98 (2) |
C8—H8A | 0.96 (2) | C27—C28 | 1.386 (3) |
C8—H8B | 1.01 (2) | C27—H27A | 1.00 (2) |
C9—C10 | 1.497 (2) | C28—C29 | 1.388 (2) |
C10—C11 | 1.523 (2) | C28—H28A | 0.98 (2) |
C11—C23 | 1.551 (2) | C29—H29A | 0.96 (2) |
C11—C12 | 1.557 (2) | C30—H30A | 0.98 (2) |
C11—C13 | 1.557 (2) | C30—H30B | 1.03 (2) |
C12—H12A | 0.989 (19) | C30—H30C | 1.06 (2) |
C12—H12B | 0.975 (19) | ||
C14—O2—H12O | 105.0 (18) | O2—C14—C13 | 111.61 (13) |
C12—N1—C8 | 109.09 (12) | N1—C14—C13 | 105.53 (12) |
C12—N1—C14 | 101.76 (12) | C15—C14—C13 | 104.90 (12) |
C8—N1—C14 | 115.23 (12) | C16—C15—C20 | 120.51 (14) |
C22—N2—C13 | 105.68 (13) | C16—C15—C14 | 128.27 (15) |
C22—N2—C30 | 111.93 (14) | C20—C15—C14 | 111.21 (13) |
C13—N2—C30 | 115.98 (13) | C15—C16—C17 | 118.07 (16) |
C2—C1—C6 | 120.81 (16) | C15—C16—H16A | 118.9 (11) |
C2—C1—H1A | 120.0 (11) | C17—C16—H16A | 123.0 (11) |
C6—C1—H1A | 119.2 (11) | C16—C17—C18 | 121.26 (15) |
C1—C2—C3 | 120.10 (16) | C16—C17—H17A | 118.4 (12) |
C1—C2—H2A | 119.9 (12) | C18—C17—H17A | 120.4 (12) |
C3—C2—H2A | 120.0 (12) | C19—C18—C17 | 120.75 (15) |
C2—C3—C4 | 119.93 (16) | C19—C18—H18A | 120.1 (13) |
C2—C3—H3A | 120.5 (13) | C17—C18—H18A | 119.2 (13) |
C4—C3—H3A | 119.6 (13) | C18—C19—C20 | 117.80 (16) |
C3—C4—C5 | 119.85 (16) | C18—C19—H19A | 122.1 (12) |
C3—C4—H4A | 120.6 (13) | C20—C19—H19A | 120.1 (12) |
C5—C4—H4A | 119.6 (13) | C19—C20—C15 | 121.55 (15) |
C4—C5—C6 | 120.66 (16) | C19—C20—C21 | 127.92 (15) |
C4—C5—H5A | 119.7 (12) | C15—C20—C21 | 110.52 (13) |
C6—C5—H5A | 119.6 (12) | O3—C21—C20 | 127.33 (14) |
C5—C6—C1 | 118.62 (15) | O3—C21—C13 | 125.07 (14) |
C5—C6—C7 | 122.39 (15) | C20—C21—C13 | 107.57 (12) |
C1—C6—C7 | 118.99 (15) | N2—C22—C23 | 104.88 (14) |
C9—C7—C6 | 126.85 (15) | N2—C22—H22A | 106.9 (14) |
C9—C7—H7A | 117.9 (11) | C23—C22—H22A | 116.5 (14) |
C6—C7—H7A | 115.1 (11) | N2—C22—H22B | 109.0 (11) |
N1—C8—C9 | 114.88 (13) | C23—C22—H22B | 115.3 (11) |
N1—C8—H8A | 107.7 (12) | H22A—C22—H22B | 104.0 (18) |
C9—C8—H8A | 111.2 (12) | C24—C23—C22 | 115.92 (14) |
N1—C8—H8B | 107.6 (11) | C24—C23—C11 | 112.96 (13) |
C9—C8—H8B | 108.8 (11) | C22—C23—C11 | 104.13 (13) |
H8A—C8—H8B | 106.1 (16) | C24—C23—H23A | 108.3 (12) |
C7—C9—C10 | 117.64 (14) | C22—C23—H23A | 108.2 (12) |
C7—C9—C8 | 124.61 (14) | C11—C23—H23A | 106.8 (12) |
C10—C9—C8 | 117.27 (13) | C25—C24—C29 | 118.25 (15) |
O1—C10—C9 | 122.92 (15) | C25—C24—C23 | 119.22 (15) |
O1—C10—C11 | 123.45 (14) | C29—C24—C23 | 122.50 (15) |
C9—C10—C11 | 113.63 (13) | C26—C25—C24 | 121.00 (17) |
C10—C11—C23 | 115.69 (13) | C26—C25—H25A | 123.0 (13) |
C10—C11—C12 | 105.08 (13) | C24—C25—H25A | 115.8 (13) |
C23—C11—C12 | 118.06 (13) | C27—C26—C25 | 120.17 (17) |
C10—C11—C13 | 110.93 (12) | C27—C26—H26A | 119.1 (12) |
C23—C11—C13 | 105.36 (12) | C25—C26—H26A | 120.7 (13) |
C12—C11—C13 | 100.70 (12) | C26—C27—C28 | 119.42 (16) |
N1—C12—C11 | 103.98 (12) | C26—C27—H27A | 121.2 (13) |
N1—C12—H12A | 111.4 (11) | C28—C27—H27A | 119.4 (13) |
C11—C12—H12A | 113.4 (11) | C27—C28—C29 | 120.43 (17) |
N1—C12—H12B | 110.0 (11) | C27—C28—H28A | 121.6 (14) |
C11—C12—H12B | 108.6 (11) | C29—C28—H28A | 117.9 (14) |
H12A—C12—H12B | 109.3 (15) | C28—C29—C24 | 120.71 (16) |
N2—C13—C21 | 113.55 (13) | C28—C29—H29A | 118.1 (13) |
N2—C13—C11 | 103.47 (12) | C24—C29—H29A | 121.2 (13) |
C21—C13—C11 | 116.85 (12) | N2—C30—H30A | 109.5 (12) |
N2—C13—C14 | 113.34 (13) | N2—C30—H30B | 113.5 (12) |
C21—C13—C14 | 104.78 (12) | H30A—C30—H30B | 103.0 (17) |
C11—C13—C14 | 104.80 (12) | N2—C30—H30C | 109.9 (11) |
O2—C14—N1 | 108.21 (12) | H30A—C30—H30C | 110.9 (17) |
O2—C14—C15 | 111.55 (13) | H30B—C30—H30C | 109.8 (16) |
N1—C14—C15 | 114.89 (13) | ||
C6—C1—C2—C3 | 1.7 (3) | N2—C13—C14—N1 | 123.70 (13) |
C1—C2—C3—C4 | −0.1 (3) | C21—C13—C14—N1 | −111.97 (13) |
C2—C3—C4—C5 | −1.1 (3) | C11—C13—C14—N1 | 11.59 (15) |
C3—C4—C5—C6 | 0.6 (3) | N2—C13—C14—C15 | −114.57 (14) |
C4—C5—C6—C1 | 1.0 (2) | C21—C13—C14—C15 | 9.76 (15) |
C4—C5—C6—C7 | −179.61 (15) | C11—C13—C14—C15 | 133.32 (12) |
C2—C1—C6—C5 | −2.1 (2) | O2—C14—C15—C16 | 51.5 (2) |
C2—C1—C6—C7 | 178.44 (15) | N1—C14—C15—C16 | −72.2 (2) |
C5—C6—C7—C9 | 46.8 (2) | C13—C14—C15—C16 | 172.45 (15) |
C1—C6—C7—C9 | −133.81 (18) | O2—C14—C15—C20 | −128.10 (14) |
C12—N1—C8—C9 | 48.56 (17) | N1—C14—C15—C20 | 108.28 (15) |
C14—N1—C8—C9 | −65.12 (17) | C13—C14—C15—C20 | −7.11 (17) |
C6—C7—C9—C10 | 173.33 (15) | C20—C15—C16—C17 | −1.4 (2) |
C6—C7—C9—C8 | 1.6 (3) | C14—C15—C16—C17 | 179.04 (16) |
N1—C8—C9—C7 | 145.29 (15) | C15—C16—C17—C18 | −0.7 (3) |
N1—C8—C9—C10 | −26.47 (19) | C16—C17—C18—C19 | 1.9 (3) |
C7—C9—C10—O1 | 37.5 (2) | C17—C18—C19—C20 | −0.9 (3) |
C8—C9—C10—O1 | −150.11 (15) | C18—C19—C20—C15 | −1.3 (2) |
C7—C9—C10—C11 | −142.41 (14) | C18—C19—C20—C21 | 179.67 (16) |
C8—C9—C10—C11 | 29.93 (18) | C16—C15—C20—C19 | 2.5 (2) |
O1—C10—C11—C23 | −4.6 (2) | C14—C15—C20—C19 | −177.89 (14) |
C9—C10—C11—C23 | 175.34 (12) | C16—C15—C20—C21 | −178.31 (14) |
O1—C10—C11—C12 | 127.48 (16) | C14—C15—C20—C21 | 1.28 (18) |
C9—C10—C11—C12 | −52.57 (15) | C19—C20—C21—O3 | 2.4 (3) |
O1—C10—C11—C13 | −124.53 (16) | C15—C20—C21—O3 | −176.71 (15) |
C9—C10—C11—C13 | 55.42 (17) | C19—C20—C21—C13 | −175.60 (15) |
C8—N1—C12—C11 | −72.99 (15) | C15—C20—C21—C13 | 5.29 (17) |
C14—N1—C12—C11 | 49.20 (14) | N2—C13—C21—O3 | −63.2 (2) |
C10—C11—C12—N1 | 74.48 (14) | C11—C13—C21—O3 | 57.2 (2) |
C23—C11—C12—N1 | −154.79 (13) | C14—C13—C21—O3 | 172.66 (15) |
C13—C11—C12—N1 | −40.83 (15) | N2—C13—C21—C20 | 114.90 (14) |
C22—N2—C13—C21 | 89.21 (15) | C11—C13—C21—C20 | −124.74 (14) |
C30—N2—C13—C21 | −35.42 (19) | C14—C13—C21—C20 | −9.29 (16) |
C22—N2—C13—C11 | −38.45 (15) | C13—N2—C22—C23 | 41.02 (16) |
C30—N2—C13—C11 | −163.08 (14) | C30—N2—C22—C23 | 168.15 (14) |
C22—N2—C13—C14 | −151.36 (13) | N2—C22—C23—C24 | 98.82 (16) |
C30—N2—C13—C14 | 84.00 (17) | N2—C22—C23—C11 | −25.91 (17) |
C10—C11—C13—N2 | 147.07 (13) | C10—C11—C23—C24 | 113.20 (15) |
C23—C11—C13—N2 | 21.16 (15) | C12—C11—C23—C24 | −12.5 (2) |
C12—C11—C13—N2 | −102.09 (13) | C13—C11—C23—C24 | −123.89 (14) |
C10—C11—C13—C21 | 21.49 (18) | C10—C11—C23—C22 | −120.19 (15) |
C23—C11—C13—C21 | −104.42 (15) | C12—C11—C23—C22 | 114.10 (15) |
C12—C11—C13—C21 | 132.33 (14) | C13—C11—C23—C22 | 2.72 (16) |
C10—C11—C13—C14 | −93.95 (14) | C22—C23—C24—C25 | 160.82 (15) |
C23—C11—C13—C14 | 140.15 (12) | C11—C23—C24—C25 | −79.13 (19) |
C12—C11—C13—C14 | 16.89 (14) | C22—C23—C24—C29 | −21.0 (2) |
C12—N1—C14—O2 | 82.39 (14) | C11—C23—C24—C29 | 99.04 (18) |
C8—N1—C14—O2 | −159.73 (12) | C29—C24—C25—C26 | −1.0 (2) |
C12—N1—C14—C15 | −152.24 (13) | C23—C24—C25—C26 | 177.28 (15) |
C8—N1—C14—C15 | −34.36 (18) | C24—C25—C26—C27 | 0.1 (3) |
C12—N1—C14—C13 | −37.20 (14) | C25—C26—C27—C28 | 1.0 (3) |
C8—N1—C14—C13 | 80.67 (14) | C26—C27—C28—C29 | −1.2 (3) |
N2—C13—C14—O2 | 6.38 (17) | C27—C28—C29—C24 | 0.3 (3) |
C21—C13—C14—O2 | 130.71 (13) | C25—C24—C29—C28 | 0.8 (2) |
C11—C13—C14—O2 | −105.73 (14) | C23—C24—C29—C28 | −177.41 (15) |
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H12O···N2 | 0.82 (3) | 2.10 (3) | 2.6741 (19) | 127 (2) |
C17—H17A···O1i | 0.965 (19) | 2.56 (2) | 3.278 (2) | 130.8 (15) |
C26—H26A···O1ii | 0.98 (3) | 2.60 (2) | 3.535 (2) | 161.6 (18) |
C29—H29A···O2iii | 0.96 (3) | 2.43 (2) | 3.363 (2) | 165.7 (18) |
Symmetry codes: (i) x, y−1, z; (ii) −x+2, −y+2, −z; (iii) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C30H26N2O3 |
Mr | 462.53 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 9.0333 (5), 9.4222 (5), 14.0290 (7) |
α, β, γ (°) | 80.943 (2), 78.034 (1), 80.578 (1) |
V (Å3) | 1142.88 (10) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.51 × 0.39 × 0.10 |
Data collection | |
Diffractometer | Bruker APEXII DUO CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.957, 0.991 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 21768, 4213, 3812 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.606 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.043, 0.130, 1.06 |
No. of reflections | 4213 |
No. of parameters | 420 |
H-atom treatment | All H-atom parameters refined |
Δρmax, Δρmin (e Å−3) | 0.58, −0.29 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
O2—H12O···N2 | 0.82 (3) | 2.10 (3) | 2.6741 (19) | 127 (2) |
C17—H17A···O1i | 0.965 (19) | 2.56 (2) | 3.278 (2) | 130.8 (15) |
C26—H26A···O1ii | 0.98 (3) | 2.60 (2) | 3.535 (2) | 161.6 (18) |
C29—H29A···O2iii | 0.96 (3) | 2.43 (2) | 3.363 (2) | 165.7 (18) |
Symmetry codes: (i) x, y−1, z; (ii) −x+2, −y+2, −z; (iii) −x+1, −y+1, −z. |
Acknowledgements
The synthetic chemistry work was funded by Universiti Sains Malaysia (USM) under the University Research grant (1001/PKIMIA/8111016). HKF and CKQ thank USM for the Research University Golden Goose Grant (1001/PFIZIK/811012). RSK thanks USM for the award of post doctoral fellowship and CKQ also thanks USM for the award of USM Fellowship.
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CrossRef Web of Science Google Scholar
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Bruker (2009). APEX2, SAINT and SADABS. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Cosier, J. & Glazer, A. M. (1986). J. Appl. Cryst. 19, 105–107. CrossRef CAS Web of Science IUCr Journals Google Scholar
Cremer, D. & Pople, J. A. (1975). J. Am. Chem. Soc. 97, 1354–1358. CrossRef CAS Web of Science Google Scholar
Dimmock, J. R., Padmanilayam, M. P., Puthucode, R. N., Nazarali, A. J., Motaganahalli, N. L., Zello, G. A., Quail, J. W., Oloo, E. O., Kraatz, H. B., Prisciak, J. S., Allen, T. M., Santos, C. L., Balzarini, J., De Clercq, E. & Manavathu, E. K. (2001). J. Med. Chem. 44, 586–593. Web of Science CSD CrossRef PubMed CAS Google Scholar
El-Subbagh, H. I., Abu-Zaid, S. M., Mahran, M. A., Badria, F. A. & Al-Obaid, A. M. (2000). J. Med. Chem. 43, 2915–2921. Web of Science CrossRef PubMed CAS Google Scholar
Gothelf, K. & Jørgensen, K. A. (1998). Chem. Rev. 98, 863–909. Web of Science CrossRef PubMed CAS Google Scholar
Gu, Y. G., Zhang, X., Clark, R. F., Djuric, S. & Ma, Z. (2004). Tetrahedron Lett. 45, 3051–3053. Web of Science CrossRef CAS Google Scholar
Horri, S., Fukase, H., Matsuo, T., Kameda, Y., Asano, N. & Matsui, K. (1986). J. Med. Chem. 29, 1038–1046. PubMed Web of Science Google Scholar
Karpas, A., Fleet, G. W. J., Dwek, R. A., Petursson, S., Mamgoong, S. K., Ramsden, N. G., Jacob, G. S. & Rademacher, T. W. (1988). Proc. Natl. Acad. Sci. USA, 85, 9229–9233. CrossRef CAS PubMed Web of Science Google Scholar
Lee, H. K., Chun, J. S. & Pak, C. S. (2001). Tetrahedron Lett. 42, 3483–3486. Web of Science CrossRef CAS Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Tsukamoto, K., Uno, A., Shimada, S. & Imokaw, G. (1989). Clin. Res. 37A, 722–729. Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The cycloaddition reaction of azomethine ylide 1,3-dipoles with olefinic dipolarophiles constitutes a straightforward approach to the synthesis of highly substituted pyrrolidine derivatives (Gothelf & Jørgensen, 1998). Pyrrolidine ring is present in many biologically active natural compounds and pharmaceuticals (Gu et al., 2004), and find utility in the treatment of diseases such as diabetes (Horri et al., 1986), cancer (Tsukamoto et al., 1989) and viral infections (Karpas et al., 1988). Heterocycles with piperidine sub-structures display important biological activities, such as cytotoxic (El-Subbagh et al., 2000) and anticancer (Dimmock et al., 2001) besides being useful as synthons in the construction of alkaloid natural products (Lee et al., 2001).
The bond lengths (Allen et al., 1987) and angles in the title compound (Fig. 1) are within normal ranges. For the two pyrrolidine rings, N1/C11–C14 is twisted about the N1–C12 with the puckering parameters (Cremer & Pople, 1975) Q = 0.4589 (16) Å and ϕ = 202.6 (2)° whereas the N2/C11/C13/C22/C23 ring adopts an envelope conformation with atom N2 deviating by 0.251 (1) Å from the mean plane through the remaining atoms (puckering parameters Q = 0.3814 (18) Å and ϕ = 356.2 (3)°). The cyclopentane (C13–C15/C20/C21) ring adopts an envelope conformation with the flap at atom C13 (puckering parameters Q = 0.2688 (10) Å and ϕ = 186.5 (10)°). The two pyrrolidine rings make a dihedral angle of 41.72 (10)° between their least-squares planes. The molecular structure is stabilized by intramolecular O2—H12O···N2 hydrogen bond which generates an S(5) ring motif (Bernstein et al., 1995).
Centrosymmetrically related molecules are linked via two pairs of intermolecular C26—H26A···O1 and C29—H29A···O2 interactions, forming R22 (16) ring motifs (Table 1). In the crystal packing (Fig. 2), the molecules are linked into two- dimensional networks parallel to the ab plane via C17—H17A···O1 interactions.