organic compounds
(S)-tert-Butyl 3-(3-phenyl-1,2,4-oxadiazol-5-yl)piperidine-1-carboxylate
aShanghai Institute of Materia Medica, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 555 Zuchongzhi Road, Shanghai 201203, People's Republic of China, and bCentral Research Institute, Shanghai Pharmaceutical (Group) Co. Ltd, 555 Zuchongzhi Road, Shanghai 201203, People's Republic of China
*Correspondence e-mail: jkshen@mail.shcnc.ac.cn
The title compound, C18H23N3O3, crystallized with two independent molecules (A and B) in the The phenyl ring and the 1,2,4-oxadiazole ring are inclined to one another by 19.9 (3)° in molecule A and 7.3 (3)° in molecule B. The of the title compound was referred to the transfered chiral center (S) of one of the starting reactants. In the crystal, A molecules are linked by C—H⋯N interactions involving the two oxadiazole N atoms.
Related literature
For the oxadiazole nucleus as a core structural unit of various muscarinic agonists, see: Orlek & Blaney (1991). For benzodiazepine receptor partial agonists, see: Watjen & Baker (1989). For dopamine transporters, see: Gray & Abrahm (1993). For 5-HT agonists, see: Swain & Baker (1991). For inhibitors of HIV, see: Matthew et al. (2007). For GABAA receptor agonists, see: Michaela & Holger (2008). For bond-length data, see: Allen et al. (1987).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 and PLATON.
Supporting information
10.1107/S1600536810018714/su2175sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810018714/su2175Isup2.hkl
A suspension of hydroxylamine hydrochloride (4.09 g), potassium carbonate (2.76 g), benzonitrile (1.03 g) in absolute ethanol (200 mL) was heated at reflux for 10 h. After the reaction was completed, monitored by TLC, the mixture was cooled, filtered to remove inorganic salts, and concentrated under vacuum. The residue was purified by
by use of a of dichloromethane to 40% acetone in dichloromethane, to give (E)-N-hydroxybenzamidine (1.36g). 1H NMR (300 MHz, DMSO-d6): 9.59 (s, 1H), 7.62-7.67 (m, 2H), 7.32-7.37 (m, 3H), 5.77 (s, 2H); EI (M+) 136 A mixture of (S)-1-(tert-butoxycarbonyl)piperidine-3-carboxylic acid (1.15 g) in absolute THF (50 mL), isobutyl carbonochloridate (5ml) and trimethylamine (2ml) were mixted together and stirred for 30min at rt, followed by slow dropwise addition of (E)-N-Hydroxy-benzamidine (1.36g) in THF (15mL). After the reaction was completed, monitored by TLC, the mixture was injected into n-Bu4NF (1 M in THF, 3 mL), warmed to reflux and was stirred for 24 h. After this reaction was completed, monitored by TLC, the mixture was poured into EtOAc and washed with water and brine. The organic layer was dried (MgSO4) and concentrated in vacuo. The residue was purified by by use of a of EtOAc/hexanes. The material was crystallized from EtOH to give the title compound as a white solid. Colourless-rod-like crystals, suitable for X-ray analysis, were obtained by recrystallization from EtOH. 1H NMR (300MHz, CDCl3): 8.05,-8.08 (m, 2H), 7.43-7.48 (m, 3H), 3.95 (d, 1H, J=8.4 Hz), 3.12-3.17 (m, 1H), 3.98 (t, 1H, J=12.6 Hz), 2.42 (d, 1H, J=12.6 Hz), 1.86 (t, 2H, J=12.6 Hz), 1.55-1.65 (m, 1H), 1.45 (s, 9H), 0.83-0.92 (m, 2H); ESI (M++23) 352.In the final cycles of
in the absence of significant effects, 4120 Friedel pairs were merged and Δf " set to zero. The H-atoms could all be located in difference Fourier maps. In the final cycles of refinment they were placed in calculated positions and treated as riding atoms: C—H 0.93, 0.96, 0.97 and 0.98 Å, for H-methine, H-methyl, H-methylene and H-aromtic, respectively, with Uiso(H) = k × Ueq(C), where k = 1.5 for H-methyl and = 1.2 for all other H-atoms.Data collection: SMART (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).C18H23N3O3 | F(000) = 704 |
Mr = 329.39 | Dx = 1.241 Mg m−3 |
Monoclinic, P21 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2yb | Cell parameters from 818 reflections |
a = 6.464 (3) Å | θ = 2.7–23.3° |
b = 15.515 (8) Å | µ = 0.09 mm−1 |
c = 17.847 (9) Å | T = 293 K |
β = 99.880 (7)° | Rod, colourless |
V = 1763.2 (15) Å3 | 0.24 × 0.15 × 0.12 mm |
Z = 4 |
Bruker SMART CCD area-detector diffractometer | 3258 independent reflections |
Radiation source: fine-focus sealed tube | 2520 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.073 |
phi and ω scans | θmax = 25.1°, θmin = 1.8° |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008) | h = −7→7 |
Tmin = 0.980, Tmax = 0.990 | k = −18→16 |
7378 measured reflections | l = −21→14 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.073 | H-atom parameters constrained |
wR(F2) = 0.198 | w = 1/[σ2(Fo2) + (0.1416P)2] where P = (Fo2 + 2Fc2)/3 |
S = 1.01 | (Δ/σ)max < 0.001 |
3258 reflections | Δρmax = 0.29 e Å−3 |
440 parameters | Δρmin = −0.44 e Å−3 |
1 restraint | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.013 (4) |
C18H23N3O3 | V = 1763.2 (15) Å3 |
Mr = 329.39 | Z = 4 |
Monoclinic, P21 | Mo Kα radiation |
a = 6.464 (3) Å | µ = 0.09 mm−1 |
b = 15.515 (8) Å | T = 293 K |
c = 17.847 (9) Å | 0.24 × 0.15 × 0.12 mm |
β = 99.880 (7)° |
Bruker SMART CCD area-detector diffractometer | 3258 independent reflections |
Absorption correction: multi-scan (SADABS; Sheldrick, 2008) | 2520 reflections with I > 2σ(I) |
Tmin = 0.980, Tmax = 0.990 | Rint = 0.073 |
7378 measured reflections |
R[F2 > 2σ(F2)] = 0.073 | 1 restraint |
wR(F2) = 0.198 | H-atom parameters constrained |
S = 1.01 | Δρmax = 0.29 e Å−3 |
3258 reflections | Δρmin = −0.44 e Å−3 |
440 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell esds are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.4355 (6) | 0.9886 (3) | 0.68689 (18) | 0.0605 (12) | |
O2 | 1.1738 (6) | 0.7663 (3) | 0.79331 (18) | 0.0644 (15) | |
O3 | 1.2986 (7) | 0.7271 (3) | 0.6870 (2) | 0.0747 (16) | |
N1 | 0.5574 (6) | 0.9308 (3) | 0.7976 (2) | 0.0536 (14) | |
N2 | 0.3265 (7) | 1.0282 (3) | 0.7402 (2) | 0.0603 (17) | |
N3 | 1.0660 (7) | 0.8361 (3) | 0.6855 (2) | 0.0626 (16) | |
C1 | 0.3287 (8) | 1.0093 (3) | 0.8751 (3) | 0.0524 (19) | |
C2 | 0.1341 (9) | 1.0467 (4) | 0.8740 (3) | 0.062 (2) | |
C3 | 0.0626 (11) | 1.0639 (4) | 0.9411 (3) | 0.070 (2) | |
C4 | 0.1837 (11) | 1.0425 (4) | 1.0097 (3) | 0.072 (2) | |
C5 | 0.3769 (12) | 1.0042 (4) | 1.0113 (3) | 0.079 (2) | |
C6 | 0.4488 (9) | 0.9868 (4) | 0.9447 (3) | 0.067 (2) | |
C7 | 0.4026 (7) | 0.9904 (3) | 0.8048 (3) | 0.0496 (17) | |
C8 | 0.5670 (7) | 0.9310 (3) | 0.7267 (3) | 0.0496 (17) | |
C9 | 0.6996 (8) | 0.8775 (4) | 0.6851 (3) | 0.0529 (17) | |
C10 | 0.6740 (9) | 0.8942 (5) | 0.6013 (3) | 0.068 (2) | |
C11 | 0.8260 (9) | 0.8384 (5) | 0.5657 (3) | 0.067 (2) | |
C12 | 1.0481 (9) | 0.8513 (4) | 0.6046 (3) | 0.061 (2) | |
C13 | 0.9262 (8) | 0.8882 (4) | 0.7234 (2) | 0.0584 (18) | |
C14 | 1.1864 (8) | 0.7715 (4) | 0.7210 (3) | 0.0542 (17) | |
C15 | 1.2965 (10) | 0.7014 (4) | 0.8439 (3) | 0.067 (2) | |
C16 | 1.2285 (14) | 0.7220 (6) | 0.9186 (3) | 0.106 (3) | |
C17 | 1.2262 (15) | 0.6118 (5) | 0.8167 (4) | 0.102 (3) | |
C18 | 1.5243 (11) | 0.7145 (5) | 0.8480 (4) | 0.086 (3) | |
O4 | 0.6093 (6) | 0.1946 (3) | 0.82130 (18) | 0.0652 (13) | |
O5 | −0.2882 (7) | 0.4596 (3) | 0.8012 (2) | 0.0755 (16) | |
O6 | −0.1493 (6) | 0.4210 (3) | 0.69793 (18) | 0.0678 (15) | |
N4 | 0.7414 (7) | 0.1666 (4) | 0.7705 (2) | 0.0672 (19) | |
N5 | 0.4557 (7) | 0.2334 (3) | 0.7072 (2) | 0.0514 (14) | |
N6 | 0.0024 (7) | 0.3759 (3) | 0.8124 (2) | 0.0583 (15) | |
C19 | 0.7234 (8) | 0.1768 (3) | 0.6348 (3) | 0.0502 (17) | |
C20 | 0.9211 (9) | 0.1437 (4) | 0.6355 (3) | 0.0614 (17) | |
C21 | 0.9925 (10) | 0.1274 (4) | 0.5684 (3) | 0.072 (2) | |
C22 | 0.8669 (11) | 0.1471 (4) | 0.4995 (3) | 0.075 (3) | |
C23 | 0.6724 (10) | 0.1798 (4) | 0.4977 (3) | 0.070 (2) | |
C24 | 0.5980 (9) | 0.1963 (4) | 0.5641 (3) | 0.0617 (19) | |
C25 | 0.6435 (8) | 0.1934 (3) | 0.7043 (2) | 0.0489 (17) | |
C26 | 0.4423 (8) | 0.2318 (3) | 0.7778 (3) | 0.0500 (16) | |
C27 | 0.2658 (9) | 0.2633 (3) | 0.8154 (3) | 0.0514 (16) | |
C28 | 0.3205 (9) | 0.2705 (4) | 0.9012 (3) | 0.0626 (19) | |
C29 | 0.1270 (10) | 0.2999 (4) | 0.9314 (3) | 0.069 (2) | |
C30 | 0.0361 (10) | 0.3818 (4) | 0.8946 (3) | 0.0642 (19) | |
C31 | 0.1823 (9) | 0.3471 (4) | 0.7790 (3) | 0.0569 (19) | |
C32 | −0.1542 (9) | 0.4222 (4) | 0.7715 (3) | 0.0570 (19) | |
C33 | −0.2846 (9) | 0.4763 (4) | 0.6425 (3) | 0.0621 (19) | |
C34 | −0.2377 (13) | 0.5693 (5) | 0.6619 (4) | 0.088 (3) | |
C35 | −0.2098 (11) | 0.4529 (5) | 0.5692 (3) | 0.083 (3) | |
C36 | −0.5115 (10) | 0.4536 (5) | 0.6379 (4) | 0.081 (3) | |
H2A | 0.05080 | 1.06050 | 0.82770 | 0.0740* | |
H3A | −0.06750 | 1.08990 | 0.93990 | 0.0850* | |
H4A | 0.13540 | 1.05380 | 1.05490 | 0.0870* | |
H5A | 0.45900 | 0.99000 | 1.05770 | 0.0950* | |
H6A | 0.57800 | 0.95980 | 0.94620 | 0.0800* | |
H9A | 0.66130 | 0.81720 | 0.69160 | 0.0640* | |
H10A | 0.70080 | 0.95460 | 0.59260 | 0.0820* | |
H10B | 0.53080 | 0.88150 | 0.57760 | 0.0820* | |
H11A | 0.78820 | 0.77820 | 0.56920 | 0.0800* | |
H11B | 0.81450 | 0.85280 | 0.51230 | 0.0800* | |
H12A | 1.13950 | 0.81190 | 0.58350 | 0.0730* | |
H12B | 1.09210 | 0.90970 | 0.59590 | 0.0730* | |
H13A | 0.96590 | 0.94840 | 0.72190 | 0.0700* | |
H13B | 0.94070 | 0.87100 | 0.77630 | 0.0700* | |
H16A | 1.26510 | 0.78050 | 0.93250 | 0.1590* | |
H16B | 1.29790 | 0.68390 | 0.95720 | 0.1590* | |
H16C | 1.07920 | 0.71480 | 0.91360 | 0.1590* | |
H17A | 1.26240 | 0.60190 | 0.76740 | 0.1530* | |
H17B | 1.07690 | 0.60700 | 0.81350 | 0.1530* | |
H17C | 1.29500 | 0.56980 | 0.85190 | 0.1530* | |
H18A | 1.55570 | 0.77500 | 0.85240 | 0.1300* | |
H18B | 1.56650 | 0.69220 | 0.80270 | 0.1300* | |
H18C | 1.59900 | 0.68480 | 0.89160 | 0.1300* | |
H20A | 1.00750 | 0.13220 | 0.68170 | 0.0740* | |
H21A | 1.12460 | 0.10330 | 0.56930 | 0.0860* | |
H22A | 0.91670 | 0.13770 | 0.45430 | 0.0900* | |
H23A | 0.58780 | 0.19140 | 0.45120 | 0.0840* | |
H24A | 0.46540 | 0.22030 | 0.56240 | 0.0740* | |
H27A | 0.15230 | 0.22090 | 0.80430 | 0.0620* | |
H28A | 0.36690 | 0.21510 | 0.92300 | 0.0750* | |
H28B | 0.43330 | 0.31180 | 0.91510 | 0.0750* | |
H29A | 0.02150 | 0.25480 | 0.92260 | 0.0830* | |
H29B | 0.16320 | 0.30870 | 0.98580 | 0.0830* | |
H30A | −0.09650 | 0.39390 | 0.91100 | 0.0770* | |
H30B | 0.13090 | 0.42930 | 0.91090 | 0.0770* | |
H31A | 0.29170 | 0.39050 | 0.78690 | 0.0680* | |
H31B | 0.13950 | 0.33890 | 0.72460 | 0.0680* | |
H34A | −0.29080 | 0.58380 | 0.70740 | 0.1320* | |
H34B | −0.30370 | 0.60510 | 0.62080 | 0.1320* | |
H34C | −0.08860 | 0.57840 | 0.67010 | 0.1320* | |
H35A | −0.06140 | 0.46290 | 0.57470 | 0.1240* | |
H35B | −0.28190 | 0.48780 | 0.52850 | 0.1240* | |
H35C | −0.23880 | 0.39320 | 0.55790 | 0.1240* | |
H36A | −0.55900 | 0.47250 | 0.68330 | 0.1220* | |
H36B | −0.52850 | 0.39230 | 0.63280 | 0.1220* | |
H36C | −0.59270 | 0.48150 | 0.59450 | 0.1220* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.058 (2) | 0.070 (2) | 0.052 (2) | 0.0050 (18) | 0.0049 (16) | 0.0100 (17) |
O2 | 0.071 (3) | 0.081 (3) | 0.0403 (19) | 0.015 (2) | 0.0071 (16) | 0.0061 (17) |
O3 | 0.083 (3) | 0.089 (3) | 0.053 (2) | 0.020 (2) | 0.0144 (18) | 0.0008 (19) |
N1 | 0.052 (3) | 0.056 (2) | 0.051 (2) | 0.006 (2) | 0.0039 (17) | 0.0042 (19) |
N2 | 0.052 (3) | 0.069 (3) | 0.060 (3) | 0.008 (2) | 0.0096 (19) | 0.011 (2) |
N3 | 0.066 (3) | 0.085 (3) | 0.036 (2) | 0.019 (2) | 0.0064 (17) | 0.002 (2) |
C1 | 0.060 (4) | 0.046 (3) | 0.050 (3) | −0.004 (2) | 0.006 (2) | 0.003 (2) |
C2 | 0.055 (4) | 0.055 (3) | 0.073 (4) | −0.002 (3) | 0.007 (2) | 0.005 (3) |
C3 | 0.084 (5) | 0.056 (3) | 0.076 (4) | 0.002 (3) | 0.028 (3) | −0.005 (3) |
C4 | 0.106 (5) | 0.057 (3) | 0.059 (3) | −0.010 (3) | 0.029 (3) | −0.006 (3) |
C5 | 0.097 (5) | 0.078 (4) | 0.058 (3) | −0.006 (4) | 0.002 (3) | 0.000 (3) |
C6 | 0.066 (4) | 0.069 (4) | 0.062 (3) | 0.000 (3) | 0.002 (3) | −0.001 (3) |
C7 | 0.035 (3) | 0.052 (3) | 0.060 (3) | −0.006 (2) | 0.003 (2) | 0.002 (2) |
C8 | 0.037 (3) | 0.055 (3) | 0.054 (3) | −0.003 (2) | −0.0004 (19) | 0.004 (2) |
C9 | 0.044 (3) | 0.058 (3) | 0.056 (3) | −0.003 (2) | 0.007 (2) | 0.001 (2) |
C10 | 0.048 (3) | 0.103 (5) | 0.048 (3) | −0.003 (3) | −0.007 (2) | 0.002 (3) |
C11 | 0.066 (4) | 0.097 (4) | 0.036 (3) | −0.003 (3) | 0.005 (2) | 0.002 (3) |
C12 | 0.062 (4) | 0.078 (4) | 0.044 (3) | 0.005 (3) | 0.012 (2) | 0.008 (2) |
C13 | 0.058 (3) | 0.078 (4) | 0.037 (2) | 0.013 (3) | 0.002 (2) | −0.002 (2) |
C14 | 0.057 (3) | 0.062 (3) | 0.042 (3) | −0.002 (3) | 0.004 (2) | −0.001 (2) |
C15 | 0.074 (4) | 0.069 (4) | 0.053 (3) | 0.006 (3) | −0.002 (2) | 0.019 (3) |
C16 | 0.128 (7) | 0.137 (7) | 0.048 (3) | 0.004 (6) | 0.004 (4) | 0.024 (4) |
C17 | 0.127 (7) | 0.081 (5) | 0.087 (5) | −0.020 (5) | −0.011 (4) | 0.022 (4) |
C18 | 0.074 (5) | 0.083 (5) | 0.093 (4) | 0.003 (3) | −0.012 (3) | 0.022 (4) |
O4 | 0.052 (2) | 0.094 (3) | 0.0467 (18) | 0.017 (2) | 0.0005 (14) | 0.0030 (18) |
O5 | 0.079 (3) | 0.100 (3) | 0.049 (2) | 0.026 (2) | 0.0150 (19) | 0.003 (2) |
O6 | 0.072 (3) | 0.090 (3) | 0.0415 (18) | 0.026 (2) | 0.0104 (16) | 0.0123 (18) |
N4 | 0.045 (3) | 0.099 (4) | 0.056 (3) | 0.016 (2) | 0.0039 (18) | 0.004 (2) |
N5 | 0.054 (3) | 0.057 (2) | 0.042 (2) | 0.008 (2) | 0.0049 (16) | 0.0065 (17) |
N6 | 0.073 (3) | 0.067 (3) | 0.0359 (19) | 0.017 (2) | 0.0124 (18) | 0.0042 (19) |
C19 | 0.042 (3) | 0.053 (3) | 0.053 (3) | −0.004 (2) | 0.001 (2) | 0.002 (2) |
C20 | 0.055 (3) | 0.067 (3) | 0.061 (3) | 0.006 (3) | 0.007 (2) | 0.003 (3) |
C21 | 0.060 (4) | 0.081 (4) | 0.075 (4) | 0.010 (3) | 0.015 (3) | −0.005 (3) |
C22 | 0.083 (5) | 0.081 (4) | 0.066 (4) | 0.002 (3) | 0.027 (3) | −0.007 (3) |
C23 | 0.073 (4) | 0.080 (4) | 0.055 (3) | −0.008 (3) | 0.006 (3) | 0.001 (3) |
C24 | 0.059 (3) | 0.076 (4) | 0.048 (3) | 0.004 (3) | 0.003 (2) | 0.004 (3) |
C25 | 0.048 (3) | 0.050 (3) | 0.046 (3) | −0.003 (2) | 0.0002 (19) | 0.005 (2) |
C26 | 0.050 (3) | 0.051 (3) | 0.046 (2) | 0.006 (2) | −0.0001 (19) | 0.001 (2) |
C27 | 0.060 (3) | 0.055 (3) | 0.038 (2) | 0.007 (2) | 0.005 (2) | 0.001 (2) |
C28 | 0.071 (4) | 0.071 (3) | 0.044 (3) | 0.010 (3) | 0.005 (2) | 0.006 (2) |
C29 | 0.089 (4) | 0.083 (4) | 0.037 (3) | 0.014 (3) | 0.014 (3) | 0.014 (2) |
C30 | 0.084 (4) | 0.070 (3) | 0.040 (3) | 0.007 (3) | 0.015 (2) | 0.002 (2) |
C31 | 0.064 (4) | 0.065 (3) | 0.043 (3) | 0.011 (2) | 0.013 (2) | 0.009 (2) |
C32 | 0.070 (4) | 0.059 (3) | 0.042 (3) | 0.009 (3) | 0.010 (2) | 0.000 (2) |
C33 | 0.069 (4) | 0.071 (3) | 0.042 (3) | 0.006 (3) | −0.003 (2) | 0.006 (2) |
C34 | 0.108 (6) | 0.076 (4) | 0.075 (4) | −0.009 (4) | 0.000 (4) | 0.008 (3) |
C35 | 0.086 (5) | 0.111 (6) | 0.048 (3) | 0.005 (4) | 0.004 (3) | 0.007 (3) |
C36 | 0.072 (5) | 0.092 (5) | 0.073 (4) | −0.002 (3) | −0.006 (3) | 0.017 (3) |
O1—N2 | 1.417 (6) | C13—H13A | 0.9700 |
O1—C8 | 1.349 (6) | C13—H13B | 0.9700 |
O2—C14 | 1.309 (6) | C16—H16A | 0.9600 |
O2—C15 | 1.487 (7) | C16—H16B | 0.9600 |
O3—C14 | 1.233 (7) | C16—H16C | 0.9600 |
O4—C26 | 1.347 (6) | C17—H17C | 0.9600 |
O4—N4 | 1.416 (6) | C17—H17A | 0.9600 |
O5—C32 | 1.235 (7) | C17—H17B | 0.9600 |
O6—C33 | 1.477 (7) | C18—H18B | 0.9600 |
O6—C32 | 1.319 (6) | C18—H18C | 0.9600 |
N1—C7 | 1.385 (6) | C18—H18A | 0.9600 |
N1—C8 | 1.278 (6) | C19—C20 | 1.375 (8) |
N2—C7 | 1.312 (6) | C19—C24 | 1.411 (8) |
N3—C13 | 1.462 (7) | C19—C25 | 1.446 (7) |
N3—C14 | 1.357 (7) | C20—C21 | 1.379 (8) |
N3—C12 | 1.448 (6) | C21—C22 | 1.386 (8) |
N4—C25 | 1.309 (6) | C22—C23 | 1.351 (10) |
N5—C25 | 1.372 (7) | C23—C24 | 1.377 (8) |
N5—C26 | 1.278 (6) | C26—C27 | 1.501 (8) |
N6—C31 | 1.465 (7) | C27—C28 | 1.515 (8) |
N6—C32 | 1.349 (7) | C27—C31 | 1.511 (8) |
N6—C30 | 1.449 (6) | C28—C29 | 1.515 (9) |
C1—C7 | 1.447 (7) | C29—C30 | 1.503 (9) |
C1—C2 | 1.382 (8) | C33—C34 | 1.503 (10) |
C1—C6 | 1.392 (8) | C33—C35 | 1.515 (8) |
C2—C3 | 1.382 (8) | C33—C36 | 1.497 (9) |
C3—C4 | 1.376 (8) | C20—H20A | 0.9300 |
C4—C5 | 1.379 (10) | C21—H21A | 0.9300 |
C5—C6 | 1.375 (8) | C22—H22A | 0.9300 |
C8—C9 | 1.481 (7) | C23—H23A | 0.9300 |
C9—C13 | 1.516 (7) | C24—H24A | 0.9300 |
C9—C10 | 1.499 (8) | C27—H27A | 0.9800 |
C10—C11 | 1.527 (9) | C28—H28A | 0.9700 |
C11—C12 | 1.497 (8) | C28—H28B | 0.9700 |
C15—C17 | 1.516 (10) | C29—H29A | 0.9700 |
C15—C16 | 1.508 (9) | C29—H29B | 0.9700 |
C15—C18 | 1.476 (10) | C30—H30A | 0.9700 |
C2—H2A | 0.9300 | C30—H30B | 0.9700 |
C3—H3A | 0.9300 | C31—H31A | 0.9700 |
C4—H4A | 0.9300 | C31—H31B | 0.9700 |
C5—H5A | 0.9300 | C34—H34A | 0.9600 |
C6—H6A | 0.9300 | C34—H34B | 0.9600 |
C9—H9A | 0.9800 | C34—H34C | 0.9600 |
C10—H10A | 0.9700 | C35—H35A | 0.9600 |
C10—H10B | 0.9700 | C35—H35B | 0.9600 |
C11—H11A | 0.9700 | C35—H35C | 0.9600 |
C11—H11B | 0.9700 | C36—H36A | 0.9600 |
C12—H12B | 0.9700 | C36—H36B | 0.9600 |
C12—H12A | 0.9700 | C36—H36C | 0.9600 |
N2—O1—C8 | 105.9 (3) | H17B—C17—H17C | 110.00 |
C14—O2—C15 | 121.5 (5) | C15—C18—H18A | 109.00 |
N4—O4—C26 | 105.9 (4) | C15—C18—H18B | 109.00 |
C32—O6—C33 | 123.1 (5) | C15—C18—H18C | 109.00 |
C7—N1—C8 | 104.4 (4) | H18A—C18—H18B | 110.00 |
O1—N2—C7 | 104.0 (4) | H18A—C18—H18C | 109.00 |
C12—N3—C14 | 121.8 (5) | H18B—C18—H18C | 109.00 |
C13—N3—C14 | 122.9 (4) | C20—C19—C24 | 118.6 (5) |
C12—N3—C13 | 114.9 (4) | C20—C19—C25 | 121.8 (5) |
O4—N4—C25 | 103.3 (4) | C24—C19—C25 | 119.6 (5) |
C25—N5—C26 | 103.8 (4) | C19—C20—C21 | 120.6 (5) |
C30—N6—C32 | 118.9 (5) | C20—C21—C22 | 119.8 (6) |
C31—N6—C32 | 121.1 (4) | C21—C22—C23 | 120.3 (5) |
C30—N6—C31 | 116.1 (4) | C22—C23—C24 | 120.7 (5) |
C2—C1—C6 | 119.0 (5) | C19—C24—C23 | 119.9 (5) |
C2—C1—C7 | 120.5 (5) | N4—C25—N5 | 113.8 (4) |
C6—C1—C7 | 120.4 (5) | N4—C25—C19 | 122.0 (5) |
C1—C2—C3 | 120.5 (5) | N5—C25—C19 | 124.2 (4) |
C2—C3—C4 | 120.1 (6) | O4—C26—N5 | 113.2 (5) |
C3—C4—C5 | 119.8 (5) | O4—C26—C27 | 118.5 (4) |
C4—C5—C6 | 120.4 (5) | N5—C26—C27 | 128.3 (5) |
C1—C6—C5 | 120.2 (6) | C26—C27—C28 | 114.4 (5) |
N2—C7—C1 | 122.8 (4) | C26—C27—C31 | 109.3 (4) |
N1—C7—N2 | 112.7 (4) | C28—C27—C31 | 112.0 (4) |
N1—C7—C1 | 124.6 (4) | C27—C28—C29 | 108.5 (5) |
O1—C8—N1 | 113.0 (4) | C28—C29—C30 | 112.6 (5) |
O1—C8—C9 | 118.3 (4) | N6—C30—C29 | 111.6 (5) |
N1—C8—C9 | 128.8 (5) | N6—C31—C27 | 109.7 (4) |
C8—C9—C10 | 115.4 (5) | O5—C32—O6 | 124.9 (5) |
C8—C9—C13 | 108.1 (4) | O5—C32—N6 | 122.3 (5) |
C10—C9—C13 | 111.3 (4) | O6—C32—N6 | 112.8 (5) |
C9—C10—C11 | 110.4 (5) | O6—C33—C34 | 109.3 (5) |
C10—C11—C12 | 111.4 (5) | O6—C33—C35 | 101.5 (5) |
N3—C12—C11 | 110.3 (5) | O6—C33—C36 | 111.2 (5) |
N3—C13—C9 | 110.9 (4) | C34—C33—C35 | 110.3 (5) |
O3—C14—N3 | 121.4 (5) | C34—C33—C36 | 113.3 (6) |
O2—C14—N3 | 112.2 (5) | C35—C33—C36 | 110.6 (5) |
O2—C14—O3 | 126.3 (5) | C19—C20—H20A | 120.00 |
C16—C15—C17 | 111.1 (6) | C21—C20—H20A | 120.00 |
O2—C15—C18 | 111.1 (5) | C20—C21—H21A | 120.00 |
O2—C15—C17 | 109.1 (5) | C22—C21—H21A | 120.00 |
O2—C15—C16 | 100.8 (5) | C21—C22—H22A | 120.00 |
C16—C15—C18 | 111.5 (6) | C23—C22—H22A | 120.00 |
C17—C15—C18 | 112.6 (6) | C22—C23—H23A | 120.00 |
C1—C2—H2A | 120.00 | C24—C23—H23A | 120.00 |
C3—C2—H2A | 120.00 | C19—C24—H24A | 120.00 |
C2—C3—H3A | 120.00 | C23—C24—H24A | 120.00 |
C4—C3—H3A | 120.00 | C26—C27—H27A | 107.00 |
C3—C4—H4A | 120.00 | C28—C27—H27A | 107.00 |
C5—C4—H4A | 120.00 | C31—C27—H27A | 107.00 |
C6—C5—H5A | 120.00 | C27—C28—H28A | 110.00 |
C4—C5—H5A | 120.00 | C27—C28—H28B | 110.00 |
C1—C6—H6A | 120.00 | C29—C28—H28A | 110.00 |
C5—C6—H6A | 120.00 | C29—C28—H28B | 110.00 |
C13—C9—H9A | 107.00 | H28A—C28—H28B | 108.00 |
C8—C9—H9A | 107.00 | C28—C29—H29A | 109.00 |
C10—C9—H9A | 107.00 | C28—C29—H29B | 109.00 |
C9—C10—H10A | 110.00 | C30—C29—H29A | 109.00 |
C9—C10—H10B | 110.00 | C30—C29—H29B | 109.00 |
C11—C10—H10A | 110.00 | H29A—C29—H29B | 108.00 |
C11—C10—H10B | 110.00 | N6—C30—H30A | 109.00 |
H10A—C10—H10B | 108.00 | N6—C30—H30B | 109.00 |
C10—C11—H11A | 109.00 | C29—C30—H30A | 109.00 |
C10—C11—H11B | 109.00 | C29—C30—H30B | 109.00 |
C12—C11—H11B | 109.00 | H30A—C30—H30B | 108.00 |
H11A—C11—H11B | 108.00 | N6—C31—H31A | 110.00 |
C12—C11—H11A | 109.00 | N6—C31—H31B | 110.00 |
H12A—C12—H12B | 108.00 | C27—C31—H31A | 110.00 |
C11—C12—H12B | 110.00 | C27—C31—H31B | 110.00 |
N3—C12—H12A | 110.00 | H31A—C31—H31B | 108.00 |
N3—C12—H12B | 110.00 | C33—C34—H34A | 109.00 |
C11—C12—H12A | 110.00 | C33—C34—H34B | 110.00 |
N3—C13—H13A | 109.00 | C33—C34—H34C | 110.00 |
N3—C13—H13B | 110.00 | H34A—C34—H34B | 110.00 |
C9—C13—H13A | 109.00 | H34A—C34—H34C | 109.00 |
C9—C13—H13B | 109.00 | H34B—C34—H34C | 110.00 |
H13A—C13—H13B | 108.00 | C33—C35—H35A | 110.00 |
C15—C16—H16A | 109.00 | C33—C35—H35B | 109.00 |
C15—C16—H16B | 109.00 | C33—C35—H35C | 109.00 |
C15—C16—H16C | 110.00 | H35A—C35—H35B | 109.00 |
H16B—C16—H16C | 110.00 | H35A—C35—H35C | 109.00 |
H16A—C16—H16B | 109.00 | H35B—C35—H35C | 109.00 |
H16A—C16—H16C | 109.00 | C33—C36—H36A | 110.00 |
H17A—C17—H17C | 109.00 | C33—C36—H36B | 109.00 |
C15—C17—H17A | 109.00 | C33—C36—H36C | 109.00 |
C15—C17—H17B | 109.00 | H36A—C36—H36B | 110.00 |
C15—C17—H17C | 109.00 | H36A—C36—H36C | 109.00 |
H17A—C17—H17B | 109.00 | H36B—C36—H36C | 109.00 |
N2—O1—C8—N1 | −1.4 (6) | C2—C1—C7—N2 | 20.5 (8) |
N2—O1—C8—C9 | 178.5 (4) | C6—C1—C2—C3 | 2.0 (9) |
C8—O1—N2—C7 | −0.3 (5) | C7—C1—C2—C3 | 179.3 (5) |
C15—O2—C14—O3 | −1.6 (9) | C2—C1—C6—C5 | −2.0 (9) |
C15—O2—C14—N3 | −178.6 (5) | C7—C1—C6—C5 | −179.4 (5) |
C14—O2—C15—C17 | −63.1 (7) | C2—C1—C7—N1 | −158.8 (5) |
C14—O2—C15—C18 | 61.6 (7) | C6—C1—C7—N2 | −162.2 (5) |
C14—O2—C15—C16 | 179.9 (6) | C6—C1—C7—N1 | 18.5 (8) |
N4—O4—C26—C27 | 176.2 (4) | C1—C2—C3—C4 | −1.1 (9) |
N4—O4—C26—N5 | −2.2 (6) | C2—C3—C4—C5 | 0.3 (10) |
C26—O4—N4—C25 | 2.7 (6) | C3—C4—C5—C6 | −0.4 (10) |
C33—O6—C32—N6 | −171.1 (5) | C4—C5—C6—C1 | 1.3 (9) |
C32—O6—C33—C36 | −65.0 (7) | N1—C8—C9—C10 | −179.6 (5) |
C32—O6—C33—C34 | 60.9 (7) | O1—C8—C9—C13 | 125.9 (5) |
C33—O6—C32—O5 | 10.3 (9) | O1—C8—C9—C10 | 0.6 (7) |
C32—O6—C33—C35 | 177.4 (5) | N1—C8—C9—C13 | −54.3 (7) |
C7—N1—C8—O1 | 2.3 (6) | C8—C9—C10—C11 | 177.3 (5) |
C8—N1—C7—N2 | −2.5 (6) | C13—C9—C10—C11 | 53.6 (7) |
C8—N1—C7—C1 | 176.8 (5) | C8—C9—C13—N3 | 179.4 (4) |
C7—N1—C8—C9 | −177.6 (5) | C10—C9—C13—N3 | −52.9 (7) |
O1—N2—C7—N1 | 1.7 (5) | C9—C10—C11—C12 | −55.1 (7) |
O1—N2—C7—C1 | −177.7 (4) | C10—C11—C12—N3 | 54.9 (7) |
C13—N3—C14—O3 | 178.0 (5) | C24—C19—C20—C21 | −2.0 (8) |
C13—N3—C12—C11 | −55.9 (7) | C25—C19—C20—C21 | 179.1 (5) |
C14—N3—C12—C11 | 117.0 (6) | C20—C19—C24—C23 | 1.8 (8) |
C12—N3—C13—C9 | 54.8 (6) | C25—C19—C24—C23 | −179.3 (5) |
C14—N3—C13—C9 | −118.0 (5) | C20—C19—C25—N4 | −10.0 (8) |
C12—N3—C14—O2 | −177.1 (5) | C20—C19—C25—N5 | 173.9 (5) |
C12—N3—C14—O3 | 5.7 (8) | C24—C19—C25—N4 | 171.1 (5) |
C13—N3—C14—O2 | −4.8 (7) | C24—C19—C25—N5 | −4.9 (8) |
O4—N4—C25—N5 | −2.4 (6) | C19—C20—C21—C22 | 2.1 (9) |
O4—N4—C25—C19 | −178.8 (4) | C20—C21—C22—C23 | −2.0 (10) |
C26—N5—C25—C19 | 177.4 (5) | C21—C22—C23—C24 | 1.8 (10) |
C25—N5—C26—O4 | 0.8 (6) | C22—C23—C24—C19 | −1.7 (9) |
C26—N5—C25—N4 | 1.1 (6) | O4—C26—C27—C28 | 15.2 (7) |
C25—N5—C26—C27 | −177.4 (5) | O4—C26—C27—C31 | 141.7 (5) |
C32—N6—C30—C29 | 150.6 (5) | N5—C26—C27—C28 | −166.7 (5) |
C31—N6—C30—C29 | −51.5 (7) | N5—C26—C27—C31 | −40.2 (7) |
C32—N6—C31—C27 | −149.7 (5) | C26—C27—C28—C29 | −178.1 (4) |
C30—N6—C32—O5 | −10.6 (9) | C31—C27—C28—C29 | 56.8 (6) |
C30—N6—C32—O6 | 170.8 (5) | C26—C27—C31—N6 | 176.9 (4) |
C31—N6—C32—O5 | −167.4 (6) | C28—C27—C31—N6 | −55.3 (6) |
C31—N6—C32—O6 | 14.0 (8) | C27—C28—C29—C30 | −54.6 (6) |
C30—N6—C31—C27 | 52.9 (6) | C28—C29—C30—N6 | 51.8 (7) |
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13A···N2i | 0.97 | 2.61 | 3.352 (7) | 133 |
C18—H18A···N1i | 0.96 | 2.61 | 3.490 (9) | 153 |
Symmetry code: (i) x+1, y, z. |
Experimental details
Crystal data | |
Chemical formula | C18H23N3O3 |
Mr | 329.39 |
Crystal system, space group | Monoclinic, P21 |
Temperature (K) | 293 |
a, b, c (Å) | 6.464 (3), 15.515 (8), 17.847 (9) |
β (°) | 99.880 (7) |
V (Å3) | 1763.2 (15) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.24 × 0.15 × 0.12 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Sheldrick, 2008) |
Tmin, Tmax | 0.980, 0.990 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 7378, 3258, 2520 |
Rint | 0.073 |
(sin θ/λ)max (Å−1) | 0.597 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.073, 0.198, 1.01 |
No. of reflections | 3258 |
No. of parameters | 440 |
No. of restraints | 1 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.44 |
Computer programs: SMART (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
C13—H13A···N2i | 0.97 | 2.61 | 3.352 (7) | 133 |
C18—H18A···N1i | 0.96 | 2.61 | 3.490 (9) | 153 |
Symmetry code: (i) x+1, y, z. |
References
Allen, F. H., Kennard, O., Watson, D. G., Brammer, L., Orpen, A. G. & Taylor, R. (1987). J. Chem. Soc. Perkin Trans. 2, pp. S1–19. CrossRef Web of Science Google Scholar
Bruker (2007). SMART and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Gray, L. & Abrahm, P. (1993). J. Med. Chem. 36, 2886–2890. PubMed Web of Science Google Scholar
Matthew, D. C., Deng, B.-L., Hartmann, T. L., Watson, K. M., Buckheit, R. W. Jr, Pannecouque, C., De Clercq, E. & Cushman, M. (2007). J. Med. Chem. 50, 4854–4867. Web of Science PubMed Google Scholar
Michaela, J. & Holger, R. (2008). J. Med. Chem. 51, 4430–4448. Web of Science PubMed Google Scholar
Orlek, B. S. & Blaney, F. E. (1991). J. Med. Chem. 34, 2726–2735. CrossRef PubMed CAS Web of Science Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
Swain, C. & Baker, R. (1991). J. Med. Chem. 34, 140–151. CrossRef PubMed CAS Web of Science Google Scholar
Watjen, F. & Baker, R. (1989). J. Med. Chem. 32, 2282–2291. CSD CrossRef CAS PubMed Web of Science Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The oxadiazole nucleus is a well studied pharmacophoric scaffold that has emerged as a core structural unit of various muscarinic agonists (Orlek & Blaney, 1991), benzodiazepine receptor partial agonists (Watjen & Baker, 1989), dopamine transporters (Gray & Abrahm, 1993), 5-HT agonists (Swain & Baker, 1991), inhibitors of HIV (Matthew, 2007), and GABAA receptor agonists (Michaela & Holger,2008). Among the oxadiazoles, 1,2,4-oxadiazole derivatives have gained importance in medicinal chemistry. The interest in five-membered systems containing one oxygen and two nitrogen atoms (positions 1, 2, and 4) is due to the occurrence of 1,2,4-oxadiazoles in biological activite compounds and natural products. In spite of extensive investigations, there are few studies on the crystal structures of oxadiazol-piperidines. Herein, we report on the crystal structure of the title compound, a new oxadiazol-piperidine. It can be reacted with acid, sulfonlchloride and chloride, followed by deprotection of the protective group, to give many usefull compounds.
The title compound crystallized in the chiral monoclinic space group P21, with two independent molecules (A and B) in the asymmetric unit (Fig. 1). It was obtained from a chiral source, hence its absolute structure, (S), was confirmed by the transfered chiral center; atom C9 in molecule A and atom C27 in molecule B (Fig. 1). The bond distances in the two molecules are very similar and close to normal values (Allen et al., 1987). The two molecules differ in the orientation of the phenyl ring with respect to the oxadiazole mean plane. In molecule A this dihedral angle is 19.9 (3)°, while in molecule B it is only 7.3 (3)°. In both molecules the piperidine ring has a chair conformation.
In the crystal symmetry related A molecules are linked via C-H···N interactions (see Table 1 and Fig. 2 for details).