organic compounds
N-[4-Cyano-3-(trifluoromethyl)phenyl]-2-ethoxybenzamide
aDepartment of Physics, Sri Bhagawan Mahaveer Jain College of Engineering, Jain University, Bangalore 562 112, India, bDepartment of Studies in Chemistry, Manasagangotri, University of Mysore, Mysore 570 006, India, and cDepartment of Studies in Physics, Manasagangotri, University of Mysore, Mysore 570 006, India
*Correspondence e-mail: mas@physics.uni-mysore.ac.in
In the title compound, C17H13F3N2O2, the two aromatic rings are essentially coplanar, forming a dihedral angle of 2.78 (12)°. The non-H atoms of the ethoxy group are coplanar with the attached ring [maximum deviation = 0.271 (3) Å]. An intramolecular N—H⋯O hydrogen bond occurs. In the molecules are linked by intermolecular C—H⋯N and C—H⋯F hydrogen bonds.
Related literature
For background to the biological activity of ethoxybenzamides, see: Mantelingu et al. (2007). For related structures, see: Ma et al. (2009); Saeed et al. (2010).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: XPRESS (MacScience, 2002); cell SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009) and ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97.
Supporting information
10.1107/S1600536810019811/wn2389sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810019811/wn2389Isup2.hkl
N-(4-Cyano-3-(trifluoromethyl)phenyl)-2-ethoxybenzamide was synthesized according to the procedure reported earlier (Mantelingu et al. 2007). The final product was obtained by crystallization using methanol as solvent. Slow evaporation of the solvent yielded colorless crystals after three days.
H atoms were placed at idealized positions and allowed to ride on their parent atoms with C—H and N—H distances set equal to 0.96 Å; Uiso(H) = 1.2Ueq(carrier atom) for all H atoms.
Data collection: XPRESS (MacScience, 2002); cell
SCALEPACK (Otwinowski & Minor, 1997); data reduction: DENZO (Otwinowski & Minor, 1997) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009) and ORTEPII (Johnson, 1976); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C17H13F3N2O2 | Z = 4 |
Mr = 334.29 | F(000) = 688 |
Monoclinic, P21/n | Dx = 1.443 Mg m−3 |
Hall symbol: -P 2yn | Mo Kα radiation, λ = 0.71073 Å |
a = 10.5010 (13) Å | µ = 0.12 mm−1 |
b = 12.8830 (16) Å | T = 293 K |
c = 11.6130 (14) Å | Block, colorless |
β = 101.653 (6)° | 0.32 × 0.30 × 0.27 mm |
V = 1538.7 (3) Å3 |
MacScience DIPLabo 32001 diffractometer | 1896 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.036 |
Graphite monochromator | θmax = 25.0°, θmin = 2.4° |
Detector resolution: 10.0 pixels mm-1 | h = −12→12 |
ω scan | k = −15→15 |
5043 measured reflections | l = −13→13 |
2704 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.049 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.176 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.1179P)2] where P = (Fo2 + 2Fc2)/3 |
2704 reflections | (Δ/σ)max = 0.001 |
217 parameters | Δρmax = 0.24 e Å−3 |
0 restraints | Δρmin = −0.19 e Å−3 |
C17H13F3N2O2 | V = 1538.7 (3) Å3 |
Mr = 334.29 | Z = 4 |
Monoclinic, P21/n | Mo Kα radiation |
a = 10.5010 (13) Å | µ = 0.12 mm−1 |
b = 12.8830 (16) Å | T = 293 K |
c = 11.6130 (14) Å | 0.32 × 0.30 × 0.27 mm |
β = 101.653 (6)° |
MacScience DIPLabo 32001 diffractometer | 1896 reflections with I > 2σ(I) |
5043 measured reflections | Rint = 0.036 |
2704 independent reflections |
R[F2 > 2σ(F2)] = 0.049 | 0 restraints |
wR(F2) = 0.176 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.24 e Å−3 |
2704 reflections | Δρmin = −0.19 e Å−3 |
217 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
N7 | 0.87506 (17) | 0.12966 (13) | 0.60529 (15) | 0.0493 (5) | |
H1 | 0.8991 | 0.0685 | 0.6519 | 0.059* | |
O24 | 0.7968 (2) | 0.17185 (12) | 0.41408 (15) | 0.0740 (6) | |
O15 | 0.89269 (17) | −0.07252 (11) | 0.65288 (15) | 0.0610 (5) | |
F21 | 0.75451 (17) | 0.57018 (11) | 0.62234 (16) | 0.0844 (5) | |
F22 | 0.79874 (19) | 0.49654 (12) | 0.47046 (14) | 0.0996 (7) | |
C6 | 0.9373 (2) | 0.23273 (17) | 0.7779 (2) | 0.0566 (6) | |
H6 | 0.9602 | 0.1701 | 0.8220 | 0.068* | |
C14 | 0.8480 (2) | −0.09241 (16) | 0.5358 (2) | 0.0513 (6) | |
C5 | 0.8896 (2) | 0.22760 (15) | 0.6581 (2) | 0.0474 (5) | |
C9 | 0.8176 (2) | −0.00775 (16) | 0.45831 (19) | 0.0489 (5) | |
C2 | 0.9212 (2) | 0.41873 (16) | 0.7744 (2) | 0.0537 (6) | |
C8 | 0.8285 (2) | 0.10574 (17) | 0.4903 (2) | 0.0501 (6) | |
F23 | 0.94844 (17) | 0.57372 (11) | 0.59172 (17) | 0.0881 (6) | |
C10 | 0.7724 (2) | −0.0286 (2) | 0.3392 (2) | 0.0608 (6) | |
H13 | 0.7506 | 0.0277 | 0.2847 | 0.073* | |
C4 | 0.8589 (2) | 0.31994 (16) | 0.5946 (2) | 0.0516 (6) | |
H14 | 0.8274 | 0.3167 | 0.5111 | 0.062* | |
C18 | 0.9345 (2) | 0.51680 (19) | 0.8361 (2) | 0.0638 (6) | |
C1 | 0.9528 (2) | 0.32671 (18) | 0.8361 (2) | 0.0602 (6) | |
H16 | 0.9846 | 0.3279 | 0.9196 | 0.072* | |
C3 | 0.8748 (2) | 0.41397 (16) | 0.6531 (2) | 0.0519 (6) | |
C13 | 0.8323 (3) | −0.19283 (18) | 0.4910 (2) | 0.0645 (7) | |
H18 | 0.8507 | −0.2510 | 0.5433 | 0.077* | |
N19 | 0.9424 (3) | 0.59476 (17) | 0.8833 (2) | 0.0817 (7) | |
C20 | 0.8439 (3) | 0.51243 (18) | 0.5837 (2) | 0.0641 (7) | |
C16 | 0.9363 (3) | −0.15806 (18) | 0.7317 (2) | 0.0650 (7) | |
H21A | 0.8635 | −0.2019 | 0.7358 | 0.078* | |
H21B | 1.0002 | −0.1970 | 0.7014 | 0.078* | |
C11 | 0.7590 (3) | −0.1291 (2) | 0.2959 (2) | 0.0684 (7) | |
H22 | 0.7290 | −0.1410 | 0.2133 | 0.082* | |
C12 | 0.7889 (3) | −0.2104 (2) | 0.3733 (3) | 0.0699 (7) | |
H23 | 0.7802 | −0.2804 | 0.3444 | 0.084* | |
C17 | 0.9919 (3) | −0.1132 (2) | 0.8500 (2) | 0.0771 (8) | |
H24A | 1.0226 | −0.1674 | 0.9054 | 0.092* | |
H24B | 0.9264 | −0.0736 | 0.8771 | 0.092* | |
H24C | 1.0631 | −0.0686 | 0.8426 | 0.092* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N7 | 0.0650 (11) | 0.0285 (9) | 0.0529 (11) | 0.0026 (8) | 0.0082 (8) | 0.0020 (7) |
O24 | 0.1173 (15) | 0.0391 (9) | 0.0591 (11) | 0.0047 (9) | 0.0021 (10) | 0.0044 (8) |
O15 | 0.0839 (11) | 0.0346 (8) | 0.0620 (11) | 0.0028 (8) | 0.0085 (8) | 0.0058 (7) |
F21 | 0.0949 (11) | 0.0477 (9) | 0.1143 (14) | 0.0226 (8) | 0.0300 (10) | 0.0033 (8) |
F22 | 0.1628 (18) | 0.0520 (9) | 0.0731 (11) | 0.0248 (10) | −0.0023 (10) | 0.0071 (8) |
C6 | 0.0748 (15) | 0.0384 (12) | 0.0545 (14) | 0.0010 (11) | 0.0080 (11) | 0.0026 (10) |
C14 | 0.0574 (13) | 0.0365 (11) | 0.0605 (14) | −0.0025 (9) | 0.0134 (10) | −0.0019 (9) |
C5 | 0.0554 (12) | 0.0329 (10) | 0.0547 (13) | −0.0006 (9) | 0.0129 (9) | −0.0007 (9) |
C9 | 0.0533 (12) | 0.0353 (11) | 0.0585 (14) | 0.0004 (9) | 0.0118 (10) | −0.0014 (10) |
C2 | 0.0624 (13) | 0.0408 (12) | 0.0594 (15) | −0.0033 (10) | 0.0159 (11) | −0.0071 (10) |
C8 | 0.0585 (13) | 0.0361 (11) | 0.0557 (14) | 0.0011 (9) | 0.0117 (10) | 0.0022 (10) |
F23 | 0.1009 (12) | 0.0474 (8) | 0.1229 (15) | −0.0056 (8) | 0.0386 (10) | 0.0167 (8) |
C10 | 0.0701 (15) | 0.0484 (13) | 0.0618 (15) | −0.0015 (11) | 0.0080 (11) | −0.0035 (11) |
C4 | 0.0682 (14) | 0.0342 (11) | 0.0521 (13) | 0.0048 (10) | 0.0116 (10) | −0.0004 (9) |
C18 | 0.0779 (16) | 0.0476 (14) | 0.0669 (15) | −0.0019 (12) | 0.0174 (12) | −0.0099 (12) |
C1 | 0.0761 (16) | 0.0492 (13) | 0.0534 (13) | −0.0027 (11) | 0.0084 (11) | −0.0021 (11) |
C3 | 0.0587 (13) | 0.0338 (11) | 0.0657 (15) | 0.0021 (9) | 0.0187 (11) | 0.0008 (10) |
C13 | 0.0798 (16) | 0.0325 (11) | 0.0818 (18) | −0.0040 (11) | 0.0178 (13) | −0.0010 (11) |
N19 | 0.110 (2) | 0.0529 (13) | 0.0824 (17) | −0.0022 (12) | 0.0193 (14) | −0.0211 (12) |
C20 | 0.0848 (17) | 0.0377 (12) | 0.0706 (17) | 0.0092 (12) | 0.0173 (13) | −0.0013 (11) |
C16 | 0.0742 (15) | 0.0465 (13) | 0.0750 (17) | 0.0069 (12) | 0.0167 (13) | 0.0178 (12) |
C11 | 0.0798 (17) | 0.0554 (15) | 0.0681 (16) | −0.0080 (13) | 0.0105 (13) | −0.0169 (13) |
C12 | 0.0812 (17) | 0.0438 (13) | 0.086 (2) | −0.0117 (12) | 0.0192 (14) | −0.0166 (13) |
C17 | 0.0840 (18) | 0.0718 (18) | 0.0721 (18) | 0.0127 (15) | 0.0080 (14) | 0.0129 (14) |
N7—C8 | 1.362 (3) | F23—C20 | 1.340 (3) |
N7—C5 | 1.398 (3) | C10—C11 | 1.386 (3) |
N7—H1 | 0.9600 | C10—H13 | 0.9600 |
O24—C8 | 1.225 (3) | C4—C3 | 1.382 (3) |
O15—C14 | 1.370 (3) | C4—H14 | 0.9598 |
O15—C16 | 1.447 (3) | C18—N19 | 1.139 (3) |
F21—C20 | 1.344 (3) | C1—H16 | 0.9599 |
F22—C20 | 1.321 (3) | C3—C20 | 1.503 (3) |
C6—C1 | 1.380 (3) | C13—C12 | 1.370 (4) |
C6—C5 | 1.381 (3) | C13—H18 | 0.9600 |
C6—H6 | 0.9600 | C16—C17 | 1.496 (4) |
C14—C13 | 1.392 (3) | C16—H21A | 0.9600 |
C14—C9 | 1.409 (3) | C16—H21B | 0.9599 |
C5—C4 | 1.403 (3) | C11—C12 | 1.374 (4) |
C9—C10 | 1.395 (3) | C11—H22 | 0.9600 |
C9—C8 | 1.507 (3) | C12—H23 | 0.9601 |
C2—C1 | 1.390 (3) | C17—H24A | 0.9600 |
C2—C3 | 1.395 (3) | C17—H24B | 0.9600 |
C2—C18 | 1.445 (3) | C17—H24C | 0.9600 |
C8—N7—C5 | 128.36 (18) | C2—C1—H16 | 120.3 |
C8—N7—H1 | 111.7 | C4—C3—C2 | 121.2 (2) |
C5—N7—H1 | 120.0 | C4—C3—C20 | 119.0 (2) |
C14—O15—C16 | 119.14 (18) | C2—C3—C20 | 119.9 (2) |
C1—C6—C5 | 121.2 (2) | C12—C13—C14 | 121.1 (2) |
C1—C6—H6 | 118.9 | C12—C13—H18 | 119.2 |
C5—C6—H6 | 119.9 | C14—C13—H18 | 119.7 |
O15—C14—C13 | 122.4 (2) | F22—C20—F23 | 106.6 (2) |
O15—C14—C9 | 118.49 (19) | F22—C20—F21 | 106.5 (2) |
C13—C14—C9 | 119.1 (2) | F23—C20—F21 | 105.6 (2) |
C6—C5—N7 | 118.07 (19) | F22—C20—C3 | 113.5 (2) |
C6—C5—C4 | 119.1 (2) | F23—C20—C3 | 112.1 (2) |
N7—C5—C4 | 122.8 (2) | F21—C20—C3 | 112.2 (2) |
C10—C9—C14 | 118.1 (2) | O15—C16—C17 | 107.6 (2) |
C10—C9—C8 | 115.14 (19) | O15—C16—H21A | 109.1 |
C14—C9—C8 | 126.7 (2) | C17—C16—H21A | 110.4 |
C1—C2—C3 | 118.8 (2) | O15—C16—H21B | 108.7 |
C1—C2—C18 | 120.0 (2) | C17—C16—H21B | 111.5 |
C3—C2—C18 | 121.2 (2) | H21A—C16—H21B | 109.5 |
O24—C8—N7 | 122.9 (2) | C12—C11—C10 | 118.8 (2) |
O24—C8—C9 | 120.1 (2) | C12—C11—H22 | 121.2 |
N7—C8—C9 | 117.08 (18) | C10—C11—H22 | 120.1 |
C11—C10—C9 | 122.0 (2) | C13—C12—C11 | 120.9 (2) |
C11—C10—H13 | 118.2 | C13—C12—H23 | 119.5 |
C9—C10—H13 | 119.8 | C11—C12—H23 | 119.7 |
C3—C4—C5 | 119.5 (2) | C16—C17—H24A | 110.5 |
C3—C4—H14 | 121.1 | C16—C17—H24B | 109.5 |
C5—C4—H14 | 119.4 | H24A—C17—H24B | 109.5 |
N19—C18—C2 | 178.5 (3) | C16—C17—H24C | 108.4 |
C6—C1—C2 | 120.2 (2) | H24A—C17—H24C | 109.5 |
C6—C1—H16 | 119.4 | H24B—C17—H24C | 109.5 |
D—H···A | D—H | H···A | D···A | D—H···A |
N7—H1···O15 | 0.96 | 1.82 | 2.661 (2) | 145 |
C1—H16···N19i | 0.96 | 2.47 | 3.377 (3) | 157 |
C13—H18···F23ii | 0.96 | 2.50 | 3.365 (3) | 150 |
Symmetry codes: (i) −x+2, −y+1, −z+2; (ii) x, y−1, z. |
Experimental details
Crystal data | |
Chemical formula | C17H13F3N2O2 |
Mr | 334.29 |
Crystal system, space group | Monoclinic, P21/n |
Temperature (K) | 293 |
a, b, c (Å) | 10.5010 (13), 12.8830 (16), 11.6130 (14) |
β (°) | 101.653 (6) |
V (Å3) | 1538.7 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.12 |
Crystal size (mm) | 0.32 × 0.30 × 0.27 |
Data collection | |
Diffractometer | MacScience DIPLabo 32001 diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5043, 2704, 1896 |
Rint | 0.036 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.049, 0.176, 1.02 |
No. of reflections | 2704 |
No. of parameters | 217 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.24, −0.19 |
Computer programs: XPRESS (MacScience, 2002), SCALEPACK (Otwinowski & Minor, 1997), DENZO (Otwinowski & Minor, 1997) and SCALEPACK, SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009) and ORTEPII (Johnson, 1976).
D—H···A | D—H | H···A | D···A | D—H···A |
N7—H1···O15 | 0.96 | 1.82 | 2.661 (2) | 145 |
C1—H16···N19i | 0.96 | 2.47 | 3.377 (3) | 157 |
C13—H18···F23ii | 0.96 | 2.50 | 3.365 (3) | 150 |
Symmetry codes: (i) −x+2, −y+1, −z+2; (ii) x, y−1, z. |
Acknowledgements
The authors are grateful to the DST and Government of India project SP/I2/FOO/93, also the University of Mysore, Mysore for financial assistance. HRM thanks the UGC-BRS and the University of Mysore for the award of a fellowship.
References
Johnson, C. K. (1976). ORTEPII. Report ORNL-5138. Oak Ridge National Laboratory, Tennessee, USA. Google Scholar
Ma, P.-H., Zhou, K.-Z., Sun, M.-L., Zhao, X.-M. & Xiao, X. (2009). Acta Cryst. E65, o1314. Web of Science CSD CrossRef IUCr Journals Google Scholar
MacScience (2002). XPRESS. MacScience Co. Ltd, Yokohama, Japan. Google Scholar
Mantelingu, K., Kishore, A. H., Balasubramanyam, K., Kumar, G. V., Altaf, M., Swamy, S. N., Selvi, R., Das, C., Narayana, C., Rangappa, K. S. & Kundu, T. K. (2007). J. Phys. Chem. B, 111, 4527–4534. Web of Science CrossRef PubMed CAS Google Scholar
Otwinowski, Z. & Minor, W. (1997). Methods in Enzymology, Vol. 276, Macromolecular Crystallography, Part A, edited by C. W. Carter Jr & R. M. Sweet, pp. 307–326. New York: Academic Press. Google Scholar
Saeed, A., Khera, R. A. & Simpson, J. (2010). Acta Cryst. E66, o911–o912. Web of Science CrossRef IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
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Histone acetyl transfereses (HAT) are enzymes that acetylate conserved lysine amino acids on histone proteins by transferring the acetyl group from acetyl CoA to form ε-N-acetyl lysine. HAT functions to promote transcriptional activation and has significant histone acetyl transferase activity with core histones (H3 and H4), and also with nucleosome core particles. In addition, HAT inhibits cell-cycle progression and counteracts the mitogenic activity of the adenoviral oncoprotein E1A. A literature survey revealed that the small molecule KCN weakly activated the p300 histone acetyl transferase (Mantelingu et al. 2007). With this background, the title compound was synthesized and we report its crystal structure here.
A perspective view of the title compound is shown in Fig. 1. The bond lengths and bond angles are normal and are comparable with values reported earlier for N-(3,4-diethoxyphenyl)acetamide (Ma et al. 2009). The dihedral angle between the two aromatic rings is 2.78 (12)°, indicating that the two aromatic rings are essentially coplanar. This value differs from the value of 55.69 (3)° reported earlier (Saeed et al. 2010). The carbamide group connecting the two rings is -anti-periplanar, as indicated by the torsion angle value of -177.2 (2)° for C5—N7—C8—C9. The non-H atoms of the ethoxy group lie within the plane of the aromatic ring, as confirmed by the torsion angle value of 174.3 (2)° for C14—O15—C16—C17. In the crystal structure, the molecules exhibit both intramolecular N—H···O and intermolecular hydrogen bonds of the type C—H···N and C—H···F. The molecules exhibit layered stacking when viewed down the b axis, as shown in Fig. 2.