metal-organic compounds
Bis[μ-4-(dimethylamino)benzoato]-κ3O,O′:O;κ3O:O,O′-bis{aqua[4-(dimethylamino)benzoato-κ2O,O′](nicotinamide-κN1)cadmium(II)}
aDepartment of Physics, Hacettepe University, 06800 Beytepe, Ankara, Turkey, bDepartment of Chemistry, Faculty of Science, Anadolu University, 26470 Yenibağlar, Eskişehir, Turkey, cDepartment of Physics, Karabük University, 78050, Karabük, Turkey, and dDepartment of Chemistry, Kafkas University, 63100 Kars, Turkey
*Correspondence e-mail: merzifon@hacettepe.edu.tr
In the centrosymmetric dimeric CdII title compound, [Cd2(C9H10NO2)4(C6H6N2O)2(H2O)2], each seven-coordinated CdII atom is chelated by the carboxylate groups of the two 4-(dimethylamino)benzoate (DMAB) anions; the two monomeric units are bridged through the two O atoms of the two carboxyl groups. In the intermolecular O—H⋯O, N—H⋯O and C—H⋯O hydrogen bonds link the molecules into a three-dimensional network. π–π contacts between the pyridine rings [centroid–centroid distance = 3.974 (1) Å] may further stabilize the structure. Weak C—H⋯π interactions are also observed.
Related literature
For the applications of transition metal complexes with molecules in biological systems, see: Antolini et al. (1982). Benzoic acid derivatives such as 4-aminobenzoic acid are used extensively as bifunctional organic ligands in coordination chemistry due to the their various coordination modes, see: Amiraslanov et al. (1979); Chen & Chen (2002); Hauptmann et al. (2000). In pellagra disease, niacin deficiency leads to loss of copper from the body with high serum and urinary copper levels, see: Krishnamachari (1974). The nicotinic acid derivative N,N-diethylnicotinamide (DENA) is an important respiratory stimulant, see: Bigoli et al. (1972). For structure–function–coordination relationships of the arylcarboxylate ion in MnII complexes of benzoic acid derivatives, see: Adiwidjaja et al. (1978); Antsyshkina et al. (1980); Catterick et al. (1974); Shnulin et al. (1981). For related structures, see: Greenaway et al. (1984); Hökelek & Necefoğlu (1996); Hökelek et al. (2009a,b,c,d).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2007); cell SAINT (Bruker, 2007); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
Supporting information
10.1107/S160053681002163X/xu2771sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: 10.1107/S160053681002163X/xu2771Isup2.hkl
The title compound was prepared by the reaction of 3CdSO4.H2O (1.28 g, 5 mmol) in H2O (30 ml) and NA (1.22 g, 10 mmol) in H2O (20 ml) with sodium 4-(dimethylamino)benzoate (1.88 g, 10 mmol) in H2O (150 ml). The mixture was filtered and set aside to crystallize at ambient temperature for one week, giving colorless single crystals.
Atoms H61 and H62 were located in a difference Fourier map and refined isotropically. The remaining H atoms were positioned geometrically with N—H = 0.86 Å (for NH2) and C—H = 0.93 and 0.96 Å for aromatic and methyl H atoms, respectively, and constrained to ride on their parent atoms, with Uiso(H) = xUeq(C,N), where x = 1.5 for methyl H and x = 1.2 for all other H atoms.
Data collection: APEX2 (Bruker, 2007); cell
SAINT (Bruker, 2007); data reduction: SAINT (Bruker, 2007); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2006); software used to prepare material for publication: WinGX (Farrugia, 1999) and PLATON (Spek, 2009).Fig. 1. The molecular structure of the title molecule with the atom-numbering scheme. Displacement ellipsoids are drawn at the 40% probability level [symmetry code: (') -x, -y, 1 - z]. Hydrogen atoms are omitted for clarity. |
[Cd2(C9H10NO2)4(C6H6N2O)2(H2O)2] | Z = 1 |
Mr = 1161.83 | F(000) = 592 |
Triclinic, P1 | Dx = 1.655 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 9.5453 (2) Å | Cell parameters from 9880 reflections |
b = 10.2372 (2) Å | θ = 2.4–28.5° |
c = 13.5697 (3) Å | µ = 0.99 mm−1 |
α = 74.102 (3)° | T = 100 K |
β = 79.479 (3)° | Block, colorless |
γ = 66.547 (2)° | 0.36 × 0.24 × 0.13 mm |
V = 1165.85 (5) Å3 |
Bruker Kappa APEXII CCD area-detector diffractometer | 5862 independent reflections |
Radiation source: fine-focus sealed tube | 5498 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
ϕ and ω scans | θmax = 28.5°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −12→12 |
Tmin = 0.752, Tmax = 0.879 | k = −13→13 |
21249 measured reflections | l = −18→18 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.022 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.056 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0271P)2 + 0.7237P] where P = (Fo2 + 2Fc2)/3 |
5862 reflections | (Δ/σ)max < 0.001 |
328 parameters | Δρmax = 0.67 e Å−3 |
0 restraints | Δρmin = −0.49 e Å−3 |
[Cd2(C9H10NO2)4(C6H6N2O)2(H2O)2] | γ = 66.547 (2)° |
Mr = 1161.83 | V = 1165.85 (5) Å3 |
Triclinic, P1 | Z = 1 |
a = 9.5453 (2) Å | Mo Kα radiation |
b = 10.2372 (2) Å | µ = 0.99 mm−1 |
c = 13.5697 (3) Å | T = 100 K |
α = 74.102 (3)° | 0.36 × 0.24 × 0.13 mm |
β = 79.479 (3)° |
Bruker Kappa APEXII CCD area-detector diffractometer | 5862 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 5498 reflections with I > 2σ(I) |
Tmin = 0.752, Tmax = 0.879 | Rint = 0.026 |
21249 measured reflections |
R[F2 > 2σ(F2)] = 0.022 | 0 restraints |
wR(F2) = 0.056 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 0.67 e Å−3 |
5862 reflections | Δρmin = −0.49 e Å−3 |
328 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cd1 | 0.180220 (12) | 0.040917 (12) | 0.492667 (9) | 0.01404 (4) | |
O1 | 0.10108 (14) | 0.14484 (13) | 0.63748 (9) | 0.0207 (2) | |
O2 | 0.33823 (14) | −0.01006 (15) | 0.62185 (10) | 0.0221 (3) | |
O3 | 0.02478 (14) | 0.30555 (14) | 0.40644 (10) | 0.0212 (2) | |
O4 | −0.02665 (13) | 0.11559 (13) | 0.40059 (9) | 0.0189 (2) | |
O5 | 0.35463 (15) | −0.60232 (14) | 0.34334 (13) | 0.0320 (3) | |
O6 | 0.34839 (15) | 0.12770 (14) | 0.37393 (10) | 0.0208 (3) | |
H61 | 0.438 (3) | 0.091 (3) | 0.374 (2) | 0.039 (7)* | |
H62 | 0.331 (3) | 0.215 (3) | 0.364 (2) | 0.042 (7)* | |
N1 | 0.2767 (2) | −0.0371 (2) | 1.10325 (13) | 0.0338 (4) | |
N2 | −0.2931 (2) | 0.5498 (2) | −0.01791 (15) | 0.0481 (6) | |
N3 | 0.32213 (15) | −0.17835 (15) | 0.44145 (11) | 0.0161 (3) | |
N4 | 0.12133 (18) | −0.45388 (19) | 0.38859 (17) | 0.0367 (5) | |
H4A | 0.0796 | −0.5110 | 0.3814 | 0.044* | |
H4B | 0.0655 | −0.3738 | 0.4075 | 0.044* | |
C1 | 0.22674 (19) | 0.06515 (18) | 0.67584 (13) | 0.0172 (3) | |
C2 | 0.24275 (19) | 0.04966 (19) | 0.78525 (13) | 0.0188 (3) | |
C3 | 0.1236 (2) | 0.1251 (2) | 0.84793 (15) | 0.0297 (4) | |
H3 | 0.0358 | 0.1959 | 0.8188 | 0.036* | |
C4 | 0.1318 (2) | 0.0978 (3) | 0.95279 (15) | 0.0358 (5) | |
H4 | 0.0498 | 0.1506 | 0.9925 | 0.043* | |
C5 | 0.2614 (2) | −0.0079 (2) | 1.00013 (14) | 0.0241 (4) | |
C6 | 0.3803 (2) | −0.0844 (3) | 0.93693 (17) | 0.0432 (6) | |
H6 | 0.4680 | −0.1559 | 0.9658 | 0.052* | |
C7 | 0.3707 (2) | −0.0565 (3) | 0.83278 (17) | 0.0414 (6) | |
H7 | 0.4520 | −0.1101 | 0.7930 | 0.050* | |
C8 | 0.1518 (3) | 0.0277 (3) | 1.17494 (18) | 0.0522 (7) | |
H8A | 0.1926 | 0.0409 | 1.2296 | 0.078* | |
H8B | 0.0955 | −0.0355 | 1.2029 | 0.078* | |
H8C | 0.0849 | 0.1207 | 1.1397 | 0.078* | |
C9 | 0.4091 (3) | −0.1524 (3) | 1.14836 (17) | 0.0412 (5) | |
H9A | 0.4063 | −0.1499 | 1.2189 | 0.062* | |
H9B | 0.5002 | −0.1395 | 1.1114 | 0.062* | |
H9C | 0.4092 | −0.2449 | 1.1449 | 0.062* | |
C10 | −0.04015 (17) | 0.25041 (18) | 0.36627 (13) | 0.0164 (3) | |
C11 | −0.12533 (19) | 0.33661 (18) | 0.27396 (13) | 0.0188 (3) | |
C12 | −0.1946 (2) | 0.2771 (2) | 0.22633 (16) | 0.0303 (4) | |
H12 | −0.2022 | 0.1873 | 0.2590 | 0.036* | |
C13 | −0.2528 (3) | 0.3473 (3) | 0.13181 (18) | 0.0400 (5) | |
H13 | −0.2986 | 0.3040 | 0.1022 | 0.048* | |
C14 | −0.2439 (2) | 0.4826 (3) | 0.07997 (16) | 0.0353 (5) | |
C15 | −0.1832 (2) | 0.5474 (2) | 0.13103 (16) | 0.0316 (4) | |
H15 | −0.1824 | 0.6404 | 0.1010 | 0.038* | |
C16 | −0.1245 (2) | 0.4756 (2) | 0.22524 (14) | 0.0231 (4) | |
H16 | −0.0835 | 0.5207 | 0.2569 | 0.028* | |
C17 | −0.2400 (3) | 0.6651 (4) | −0.07824 (19) | 0.0612 (9) | |
H17A | −0.2756 | 0.6970 | −0.1457 | 0.092* | |
H17B | −0.1300 | 0.6285 | −0.0838 | 0.092* | |
H17C | −0.2792 | 0.7458 | −0.0451 | 0.092* | |
C18 | −0.3162 (4) | 0.4603 (4) | −0.0761 (2) | 0.0700 (11) | |
H18A | −0.3484 | 0.5187 | −0.1424 | 0.105* | |
H18B | −0.3935 | 0.4231 | −0.0396 | 0.105* | |
H18C | −0.2219 | 0.3802 | −0.0846 | 0.105* | |
C19 | 0.25695 (18) | −0.26001 (17) | 0.41870 (12) | 0.0158 (3) | |
H19 | 0.1506 | −0.2288 | 0.4251 | 0.019* | |
C20 | 0.34143 (18) | −0.38911 (17) | 0.38596 (13) | 0.0160 (3) | |
C21 | 0.50027 (19) | −0.43196 (18) | 0.37210 (14) | 0.0192 (3) | |
H21 | 0.5599 | −0.5158 | 0.3479 | 0.023* | |
C22 | 0.56831 (19) | −0.34787 (18) | 0.39492 (14) | 0.0200 (3) | |
H22 | 0.6742 | −0.3742 | 0.3861 | 0.024* | |
C23 | 0.47585 (18) | −0.22380 (18) | 0.43116 (13) | 0.0183 (3) | |
H23 | 0.5221 | −0.1699 | 0.4491 | 0.022* | |
C24 | 0.27089 (19) | −0.48910 (18) | 0.37050 (13) | 0.0180 (3) |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cd1 | 0.00975 (6) | 0.01423 (6) | 0.01936 (7) | −0.00424 (4) | −0.00041 (4) | −0.00645 (4) |
O1 | 0.0180 (6) | 0.0199 (6) | 0.0216 (6) | −0.0039 (5) | −0.0013 (5) | −0.0055 (5) |
O2 | 0.0146 (6) | 0.0317 (7) | 0.0235 (6) | −0.0076 (5) | 0.0011 (5) | −0.0147 (5) |
O3 | 0.0175 (6) | 0.0234 (6) | 0.0251 (6) | −0.0106 (5) | −0.0027 (5) | −0.0038 (5) |
O4 | 0.0146 (5) | 0.0156 (5) | 0.0242 (6) | −0.0040 (4) | −0.0016 (5) | −0.0032 (5) |
O5 | 0.0226 (7) | 0.0207 (6) | 0.0575 (10) | −0.0107 (5) | 0.0111 (6) | −0.0216 (6) |
O6 | 0.0140 (6) | 0.0149 (6) | 0.0319 (7) | −0.0055 (5) | 0.0024 (5) | −0.0054 (5) |
N1 | 0.0317 (9) | 0.0417 (10) | 0.0189 (8) | −0.0081 (8) | 0.0012 (7) | −0.0031 (7) |
N2 | 0.0338 (10) | 0.0590 (14) | 0.0280 (10) | 0.0090 (9) | −0.0135 (8) | −0.0055 (9) |
N3 | 0.0130 (6) | 0.0142 (6) | 0.0208 (7) | −0.0052 (5) | 0.0000 (5) | −0.0043 (5) |
N4 | 0.0140 (7) | 0.0274 (8) | 0.0800 (14) | −0.0064 (6) | 0.0000 (8) | −0.0343 (9) |
C1 | 0.0168 (7) | 0.0183 (7) | 0.0206 (8) | −0.0100 (6) | 0.0016 (6) | −0.0075 (6) |
C2 | 0.0173 (8) | 0.0225 (8) | 0.0199 (8) | −0.0098 (7) | 0.0013 (6) | −0.0077 (6) |
C3 | 0.0241 (9) | 0.0290 (10) | 0.0219 (9) | 0.0031 (8) | 0.0010 (7) | −0.0050 (7) |
C4 | 0.0273 (10) | 0.0416 (12) | 0.0205 (9) | 0.0025 (9) | 0.0055 (8) | −0.0067 (8) |
C5 | 0.0227 (9) | 0.0290 (9) | 0.0204 (8) | −0.0116 (7) | 0.0015 (7) | −0.0040 (7) |
C6 | 0.0231 (10) | 0.0654 (16) | 0.0308 (11) | 0.0066 (10) | −0.0103 (8) | −0.0243 (11) |
C7 | 0.0182 (9) | 0.0676 (16) | 0.0304 (11) | 0.0054 (10) | −0.0056 (8) | −0.0284 (11) |
C8 | 0.0413 (14) | 0.0785 (19) | 0.0211 (10) | −0.0141 (13) | 0.0112 (9) | −0.0075 (11) |
C9 | 0.0452 (13) | 0.0485 (13) | 0.0272 (10) | −0.0092 (11) | −0.0155 (9) | −0.0083 (10) |
C10 | 0.0094 (7) | 0.0177 (7) | 0.0194 (8) | −0.0030 (6) | 0.0010 (6) | −0.0045 (6) |
C11 | 0.0132 (7) | 0.0172 (7) | 0.0217 (8) | 0.0000 (6) | −0.0023 (6) | −0.0054 (6) |
C12 | 0.0327 (10) | 0.0223 (9) | 0.0367 (11) | −0.0064 (8) | −0.0141 (8) | −0.0060 (8) |
C13 | 0.0404 (12) | 0.0380 (12) | 0.0417 (12) | −0.0030 (10) | −0.0223 (10) | −0.0141 (10) |
C14 | 0.0227 (9) | 0.0399 (11) | 0.0263 (10) | 0.0078 (8) | −0.0082 (8) | −0.0061 (8) |
C15 | 0.0222 (9) | 0.0298 (10) | 0.0290 (10) | −0.0014 (8) | −0.0015 (8) | 0.0023 (8) |
C16 | 0.0169 (8) | 0.0226 (8) | 0.0262 (9) | −0.0050 (7) | −0.0004 (7) | −0.0039 (7) |
C17 | 0.0276 (12) | 0.083 (2) | 0.0278 (12) | 0.0100 (12) | −0.0016 (9) | 0.0126 (12) |
C18 | 0.0556 (17) | 0.085 (2) | 0.0421 (15) | 0.0227 (16) | −0.0289 (13) | −0.0291 (15) |
C19 | 0.0124 (7) | 0.0151 (7) | 0.0199 (8) | −0.0058 (6) | 0.0002 (6) | −0.0040 (6) |
C20 | 0.0143 (7) | 0.0138 (7) | 0.0199 (8) | −0.0053 (6) | −0.0002 (6) | −0.0043 (6) |
C21 | 0.0136 (7) | 0.0155 (7) | 0.0257 (8) | −0.0032 (6) | 0.0017 (6) | −0.0058 (6) |
C22 | 0.0106 (7) | 0.0176 (8) | 0.0293 (9) | −0.0042 (6) | 0.0002 (6) | −0.0038 (7) |
C23 | 0.0139 (7) | 0.0169 (7) | 0.0248 (8) | −0.0072 (6) | −0.0011 (6) | −0.0038 (6) |
C24 | 0.0164 (7) | 0.0141 (7) | 0.0236 (8) | −0.0057 (6) | −0.0010 (6) | −0.0045 (6) |
Cd1—O1 | 2.3511 (12) | C8—H8A | 0.9600 |
Cd1—O2 | 2.3362 (12) | C8—H8B | 0.9600 |
Cd1—O3 | 2.5705 (13) | C8—H8C | 0.9600 |
Cd1—O4i | 2.5762 (12) | C9—H9A | 0.9600 |
Cd1—O6 | 2.3170 (12) | C9—H9B | 0.9600 |
Cd1—N3 | 2.3339 (14) | C9—H9C | 0.9600 |
Cd1—C1 | 2.6955 (17) | C11—C10 | 1.485 (2) |
O1—C1 | 1.262 (2) | C11—C12 | 1.385 (3) |
O2—C1 | 1.278 (2) | C11—C16 | 1.398 (2) |
O3—C10 | 1.253 (2) | C12—C13 | 1.381 (3) |
O4—Cd1 | 2.2849 (12) | C12—H12 | 0.9300 |
O4—Cd1i | 2.5762 (12) | C13—C14 | 1.400 (3) |
O4—C10 | 1.291 (2) | C13—H13 | 0.9300 |
O5—C24 | 1.228 (2) | C14—N2 | 1.388 (3) |
O6—H61 | 0.78 (3) | C15—C14 | 1.400 (3) |
O6—H62 | 0.81 (3) | C15—H15 | 0.9300 |
N1—C5 | 1.371 (2) | C16—C15 | 1.381 (3) |
N1—C8 | 1.452 (3) | C16—H16 | 0.9300 |
N1—C9 | 1.437 (3) | C17—N2 | 1.455 (4) |
N3—C19 | 1.344 (2) | C17—H17A | 0.9600 |
N3—C23 | 1.344 (2) | C17—H17B | 0.9600 |
N4—C24 | 1.319 (2) | C17—H17C | 0.9600 |
N4—H4A | 0.8600 | C18—N2 | 1.460 (4) |
N4—H4B | 0.8600 | C18—H18A | 0.9600 |
C1—C2 | 1.479 (2) | C18—H18B | 0.9600 |
C2—C3 | 1.386 (2) | C18—H18C | 0.9600 |
C2—C7 | 1.391 (3) | C19—C20 | 1.392 (2) |
C3—C4 | 1.384 (3) | C19—H19 | 0.9300 |
C3—H3 | 0.9300 | C20—C21 | 1.392 (2) |
C4—H4 | 0.9300 | C20—C24 | 1.504 (2) |
C5—C4 | 1.399 (3) | C21—C22 | 1.387 (2) |
C5—C6 | 1.394 (3) | C21—H21 | 0.9300 |
C6—C7 | 1.376 (3) | C22—H22 | 0.9300 |
C6—H6 | 0.9300 | C23—C22 | 1.388 (2) |
C7—H7 | 0.9300 | C23—H23 | 0.9300 |
O1—Cd1—O3 | 80.40 (4) | C7—C6—C5 | 121.4 (2) |
O1—Cd1—O4i | 81.03 (4) | C7—C6—H6 | 119.3 |
O1—Cd1—C1 | 27.90 (5) | C2—C7—H7 | 119.1 |
O2—Cd1—O1 | 55.96 (4) | C6—C7—C2 | 121.85 (19) |
O2—Cd1—O3 | 121.05 (4) | C6—C7—H7 | 119.1 |
O2—Cd1—O4i | 95.15 (4) | N1—C8—H8A | 109.5 |
O2—Cd1—C1 | 28.30 (5) | N1—C8—H8B | 109.5 |
O3—Cd1—O4i | 116.80 (4) | N1—C8—H8C | 109.5 |
O3—Cd1—C1 | 103.06 (5) | H8A—C8—H8B | 109.5 |
O4—Cd1—O1 | 108.51 (4) | H8A—C8—H8C | 109.5 |
O4—Cd1—O2 | 163.91 (4) | H8B—C8—H8C | 109.5 |
O4—Cd1—O3 | 53.78 (4) | N1—C9—H9A | 109.5 |
O4—Cd1—O4i | 76.87 (4) | N1—C9—H9B | 109.5 |
O4—Cd1—O6 | 102.15 (5) | N1—C9—H9C | 109.5 |
O4—Cd1—N3 | 98.43 (5) | H9A—C9—H9B | 109.5 |
O4—Cd1—C1 | 135.79 (5) | H9A—C9—H9C | 109.5 |
O4i—Cd1—C1 | 85.18 (4) | H9B—C9—H9C | 109.5 |
O6—Cd1—O1 | 113.98 (5) | O3—C10—O4 | 120.68 (15) |
O6—Cd1—O2 | 89.36 (5) | O3—C10—C11 | 120.28 (15) |
O6—Cd1—O3 | 73.12 (4) | O4—C10—C11 | 118.91 (15) |
O6—Cd1—O4i | 163.97 (4) | C12—C11—C10 | 121.50 (16) |
O6—Cd1—N3 | 84.01 (5) | C12—C11—C16 | 117.17 (17) |
O6—Cd1—C1 | 105.44 (5) | C16—C11—C10 | 120.97 (16) |
N3—Cd1—O1 | 142.57 (5) | C11—C12—H12 | 119.0 |
N3—Cd1—O2 | 93.88 (5) | C13—C12—C11 | 121.9 (2) |
N3—Cd1—O3 | 137.02 (4) | C13—C12—H12 | 119.0 |
N3—Cd1—O4i | 80.34 (4) | C12—C13—C14 | 121.0 (2) |
N3—Cd1—C1 | 118.10 (5) | C12—C13—H13 | 119.5 |
C1—O1—Cd1 | 91.41 (10) | C14—C13—H13 | 119.5 |
C1—O2—Cd1 | 91.67 (10) | N2—C14—C13 | 121.5 (2) |
C10—O3—Cd1 | 85.54 (10) | N2—C14—C15 | 121.4 (2) |
Cd1—O4—Cd1i | 103.13 (4) | C13—C14—C15 | 117.13 (18) |
C10—O4—Cd1 | 97.69 (10) | C14—C15—H15 | 119.4 |
C10—O4—Cd1i | 140.80 (10) | C16—C15—C14 | 121.2 (2) |
Cd1—O6—H61 | 124 (2) | C16—C15—H15 | 119.4 |
Cd1—O6—H62 | 116.2 (19) | C11—C16—H16 | 119.3 |
H61—O6—H62 | 104 (3) | C15—C16—C11 | 121.40 (19) |
C5—N1—C9 | 120.90 (18) | C15—C16—H16 | 119.3 |
C5—N1—C8 | 122.36 (19) | N2—C17—H17A | 109.5 |
C9—N1—C8 | 115.94 (18) | N2—C17—H17B | 109.5 |
C14—N2—C17 | 117.8 (2) | N2—C17—H17C | 109.5 |
C14—N2—C18 | 117.6 (2) | H17A—C17—H17B | 109.5 |
C17—N2—C18 | 115.8 (2) | H17A—C17—H17C | 109.5 |
C19—N3—Cd1 | 122.92 (10) | H17B—C17—H17C | 109.5 |
C23—N3—Cd1 | 119.01 (11) | N2—C18—H18A | 109.5 |
C23—N3—C19 | 118.04 (14) | N2—C18—H18B | 109.5 |
C24—N4—H4A | 120.0 | N2—C18—H18C | 109.5 |
C24—N4—H4B | 120.0 | H18A—C18—H18B | 109.5 |
H4A—N4—H4B | 120.0 | H18A—C18—H18C | 109.5 |
O1—C1—Cd1 | 60.69 (9) | H18B—C18—H18C | 109.5 |
O1—C1—O2 | 119.93 (15) | N3—C19—C20 | 122.96 (14) |
O1—C1—C2 | 120.45 (15) | N3—C19—H19 | 118.5 |
O2—C1—Cd1 | 60.04 (9) | C20—C19—H19 | 118.5 |
O2—C1—C2 | 119.48 (15) | C19—C20—C21 | 118.29 (15) |
C2—C1—Cd1 | 167.27 (11) | C19—C20—C24 | 123.42 (14) |
C3—C2—C1 | 121.73 (16) | C21—C20—C24 | 118.20 (14) |
C3—C2—C7 | 116.93 (17) | C20—C21—H21 | 120.5 |
C7—C2—C1 | 120.76 (16) | C22—C21—C20 | 119.03 (15) |
C2—C3—H3 | 119.1 | C22—C21—H21 | 120.5 |
C4—C3—C2 | 121.74 (18) | C21—C22—C23 | 118.92 (15) |
C4—C3—H3 | 119.1 | C21—C22—H22 | 120.5 |
C3—C4—C5 | 121.17 (18) | C23—C22—H22 | 120.5 |
C3—C4—H4 | 119.4 | N3—C23—C22 | 122.66 (15) |
C5—C4—H4 | 119.4 | N3—C23—H23 | 118.7 |
N1—C5—C4 | 123.52 (18) | C22—C23—H23 | 118.7 |
N1—C5—C6 | 119.59 (18) | O5—C24—N4 | 122.03 (16) |
C6—C5—C4 | 116.89 (18) | O5—C24—C20 | 118.99 (15) |
C5—C6—H6 | 119.3 | N4—C24—C20 | 118.97 (15) |
O2—Cd1—O1—C1 | −5.81 (9) | Cd1i—O4—Cd1—C1 | −68.68 (7) |
O3—Cd1—O1—C1 | −144.01 (10) | C10—O4—Cd1—O1 | 70.86 (10) |
O4—Cd1—O1—C1 | 169.50 (9) | C10—O4—Cd1—O2 | 85.00 (18) |
O4i—Cd1—O1—C1 | 96.68 (10) | C10—O4—Cd1—O3 | 8.44 (9) |
O6—Cd1—O1—C1 | −77.44 (10) | C10—O4—Cd1—O4i | 146.56 (11) |
N3—Cd1—O1—C1 | 35.73 (13) | C10—O4—Cd1—O6 | −49.84 (10) |
O1—Cd1—O2—C1 | 5.74 (9) | C10—O4—Cd1—N3 | −135.48 (10) |
O3—Cd1—O2—C1 | 55.83 (11) | C10—O4—Cd1—C1 | 77.88 (11) |
O4—Cd1—O2—C1 | −10.5 (2) | Cd1—O4—C10—O3 | −16.40 (16) |
O4i—Cd1—O2—C1 | −69.80 (10) | Cd1i—O4—C10—O3 | 105.49 (18) |
O6—Cd1—O2—C1 | 125.61 (10) | Cd1—O4—C10—C11 | 159.57 (12) |
N3—Cd1—O2—C1 | −150.44 (10) | Cd1i—O4—C10—C11 | −78.5 (2) |
O1—Cd1—O3—C10 | −130.16 (10) | C8—N1—C5—C4 | 7.3 (4) |
O2—Cd1—O3—C10 | −170.30 (9) | C8—N1—C5—C6 | −173.6 (3) |
O4—Cd1—O3—C10 | −8.64 (9) | C9—N1—C5—C4 | 176.6 (2) |
O4i—Cd1—O3—C10 | −55.38 (10) | C9—N1—C5—C6 | −4.3 (3) |
O6—Cd1—O3—C10 | 111.01 (10) | Cd1—N3—C19—C20 | 178.53 (12) |
N3—Cd1—O3—C10 | 50.07 (11) | C23—N3—C19—C20 | 0.5 (2) |
C1—Cd1—O3—C10 | −146.56 (9) | Cd1—N3—C23—C22 | −175.85 (13) |
O1—Cd1—N3—C19 | 104.17 (13) | C19—N3—C23—C22 | 2.3 (2) |
O1—Cd1—N3—C23 | −77.81 (14) | Cd1—C1—C2—C3 | −93.7 (6) |
O2—Cd1—N3—C19 | 137.60 (13) | Cd1—C1—C2—C7 | 77.3 (6) |
O2—Cd1—N3—C23 | −44.39 (13) | O1—C1—C2—C3 | −2.3 (3) |
O3—Cd1—N3—C19 | −76.20 (14) | O1—C1—C2—C7 | 168.71 (19) |
O3—Cd1—N3—C23 | 101.82 (13) | O2—C1—C2—C3 | −177.86 (17) |
O4—Cd1—N3—C19 | −32.01 (13) | O2—C1—C2—C7 | −6.9 (3) |
O4i—Cd1—N3—C19 | 43.03 (12) | C1—C2—C3—C4 | 172.1 (2) |
O4—Cd1—N3—C23 | 146.00 (12) | C7—C2—C3—C4 | 0.8 (3) |
O4i—Cd1—N3—C23 | −138.96 (13) | C1—C2—C7—C6 | −172.4 (2) |
O6—Cd1—N3—C19 | −133.45 (13) | C3—C2—C7—C6 | −1.0 (4) |
O6—Cd1—N3—C23 | 44.56 (12) | C2—C3—C4—C5 | −0.1 (4) |
C1—Cd1—N3—C19 | 122.22 (12) | N1—C5—C4—C3 | 178.6 (2) |
C1—Cd1—N3—C23 | −59.76 (13) | C6—C5—C4—C3 | −0.5 (4) |
O1—Cd1—C1—O2 | −169.81 (16) | N1—C5—C6—C7 | −178.8 (3) |
O1—Cd1—C1—C2 | 98.7 (5) | C4—C5—C6—C7 | 0.4 (4) |
O2—Cd1—C1—O1 | 169.81 (16) | C5—C6—C7—C2 | 0.4 (4) |
O2—Cd1—C1—C2 | −91.5 (5) | C12—C11—C10—O3 | 178.21 (17) |
O3—Cd1—C1—O1 | 36.50 (10) | C12—C11—C10—O4 | 2.2 (2) |
O3—Cd1—C1—O2 | −133.31 (10) | C16—C11—C10—O3 | 5.3 (2) |
O3—Cd1—C1—C2 | 135.2 (5) | C16—C11—C10—O4 | −170.72 (15) |
O4—Cd1—C1—O1 | −14.35 (13) | C10—C11—C12—C13 | −169.52 (19) |
O4i—Cd1—C1—O1 | −79.92 (9) | C16—C11—C12—C13 | 3.7 (3) |
O4—Cd1—C1—O2 | 175.84 (9) | C10—C11—C16—C15 | 170.03 (16) |
O4i—Cd1—C1—O2 | 110.28 (10) | C12—C11—C16—C15 | −3.2 (3) |
O4—Cd1—C1—C2 | 84.4 (5) | C11—C12—C13—C14 | 0.0 (3) |
O4i—Cd1—C1—C2 | 18.8 (5) | C12—C13—C14—N2 | 175.8 (2) |
O6—Cd1—C1—O1 | 112.31 (10) | C12—C13—C14—C15 | −4.1 (3) |
O6—Cd1—C1—O2 | −57.50 (10) | C13—C14—N2—C17 | −162.1 (2) |
O6—Cd1—C1—C2 | −149.0 (5) | C13—C14—N2—C18 | −15.8 (3) |
N3—Cd1—C1—O1 | −156.28 (9) | C15—C14—N2—C17 | 17.8 (3) |
N3—Cd1—C1—O2 | 33.92 (11) | C15—C14—N2—C18 | 164.1 (2) |
N3—Cd1—C1—C2 | −57.5 (5) | C16—C15—C14—N2 | −175.34 (19) |
Cd1—O1—C1—O2 | 10.19 (16) | C16—C15—C14—C13 | 4.6 (3) |
Cd1—O1—C1—C2 | −165.37 (13) | C11—C16—C15—C14 | −1.0 (3) |
Cd1—O2—C1—O1 | −10.26 (16) | N3—C19—C20—C21 | −2.8 (2) |
Cd1—O2—C1—C2 | 165.34 (13) | N3—C19—C20—C24 | 173.63 (15) |
Cd1—O3—C10—O4 | 14.44 (14) | C19—C20—C21—C22 | 2.3 (2) |
Cd1—O3—C10—C11 | −161.46 (14) | C24—C20—C21—C22 | −174.27 (16) |
Cd1i—O4—Cd1—O1 | −75.71 (5) | C19—C20—C24—O5 | −178.59 (17) |
Cd1i—O4—Cd1—O2 | −61.56 (17) | C19—C20—C24—N4 | 0.0 (3) |
Cd1i—O4—Cd1—O3 | −138.13 (6) | C21—C20—C24—O5 | −2.2 (3) |
Cd1i—O4—Cd1—O4i | 0.0 | C21—C20—C24—N4 | 176.46 (18) |
Cd1i—O4—Cd1—O6 | 163.60 (4) | C20—C21—C22—C23 | 0.2 (3) |
Cd1i—O4—Cd1—N3 | 77.95 (5) | N3—C23—C22—C21 | −2.6 (3) |
Symmetry code: (i) −x, −y, −z+1. |
Cg2 and Cg3 are the centroids of the C11–C16 and N3/C19–C23 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4A···O3ii | 0.86 | 2.07 | 2.893 (2) | 160 |
N4—H4B···O1i | 0.86 | 2.24 | 2.993 (2) | 147 |
O6—H61···O2iii | 0.79 (3) | 1.97 (3) | 2.749 (2) | 176 (2) |
O6—H62···O5iv | 0.82 (3) | 1.91 (3) | 2.703 (2) | 163 (3) |
C19—H19···O1i | 0.93 | 2.44 | 3.302 (2) | 155 |
C23—H23···O2iii | 0.93 | 2.57 | 3.372 (2) | 144 |
C9—H9A···Cg3v | 0.96 | 2.61 | 3.434 (2) | 144 |
C17—H17B···Cg2vi | 0.96 | 2.98 | 3.887 (3) | 159 |
Symmetry codes: (i) −x, −y, −z+1; (ii) x, y−1, z; (iii) −x+1, −y, −z+1; (iv) x, y+1, z; (v) x, y, z+1; (vi) −x, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | [Cd2(C9H10NO2)4(C6H6N2O)2(H2O)2] |
Mr | 1161.83 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 100 |
a, b, c (Å) | 9.5453 (2), 10.2372 (2), 13.5697 (3) |
α, β, γ (°) | 74.102 (3), 79.479 (3), 66.547 (2) |
V (Å3) | 1165.85 (5) |
Z | 1 |
Radiation type | Mo Kα |
µ (mm−1) | 0.99 |
Crystal size (mm) | 0.36 × 0.24 × 0.13 |
Data collection | |
Diffractometer | Bruker Kappa APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.752, 0.879 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 21249, 5862, 5498 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.671 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.022, 0.056, 1.06 |
No. of reflections | 5862 |
No. of parameters | 328 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.67, −0.49 |
Computer programs: APEX2 (Bruker, 2007), SAINT (Bruker, 2007), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), Mercury (Macrae et al., 2006), WinGX (Farrugia, 1999) and PLATON (Spek, 2009).
Cd1—O1 | 2.3511 (12) | Cd1—O4i | 2.5762 (12) |
Cd1—O2 | 2.3362 (12) | Cd1—O6 | 2.3170 (12) |
Cd1—O3 | 2.5705 (13) | Cd1—N3 | 2.3339 (14) |
Symmetry code: (i) −x, −y, −z+1. |
Cg2 and Cg3 are the centroids of the C11–C16 and N3/C19–C23 rings, respectively. |
D—H···A | D—H | H···A | D···A | D—H···A |
N4—H4A···O3ii | 0.86 | 2.07 | 2.893 (2) | 160 |
N4—H4B···O1i | 0.86 | 2.24 | 2.993 (2) | 147 |
O6—H61···O2iii | 0.79 (3) | 1.97 (3) | 2.749 (2) | 176 (2) |
O6—H62···O5iv | 0.82 (3) | 1.91 (3) | 2.703 (2) | 163 (3) |
C19—H19···O1i | 0.93 | 2.44 | 3.302 (2) | 155 |
C23—H23···O2iii | 0.93 | 2.57 | 3.372 (2) | 144 |
C9—H9A···Cg3v | 0.96 | 2.61 | 3.434 (2) | 144 |
C17—H17B···Cg2vi | 0.96 | 2.98 | 3.887 (3) | 159 |
Symmetry codes: (i) −x, −y, −z+1; (ii) x, y−1, z; (iii) −x+1, −y, −z+1; (iv) x, y+1, z; (v) x, y, z+1; (vi) −x, −y+1, −z. |
Acknowledgements
The authors are indebted to Anadolu University and the Medicinal Plants and Medicine Research Centre of Anadolu University, Eskişehir, Turkey, for use of the X-ray diffractometer. This work was supported financially by Kafkas University Research Fund (grant No. 2009-FEF-03).
References
Adiwidjaja, G., Rossmanith, E. & Küppers, H. (1978). Acta Cryst. B34, 3079–3083. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Amiraslanov, I. R., Mamedov, Kh. S., Movsumov, E. M., Musaev, F. N. & Nadzhafov, G. N. (1979). Zh. Strukt. Khim. 20, 1075–1080. CAS Google Scholar
Antolini, L., Battaglia, L. P., Corradi, A. B., Marcotrigiano, G., Menabue, L., Pellacani, G. C. & Saladini, M. (1982). Inorg. Chem. 21, 1391–1395. CSD CrossRef CAS Web of Science Google Scholar
Antsyshkina, A. S., Chiragov, F. M. & Poray-Koshits, M. A. (1980). Koord. Khim. 15, 1098–1103. Google Scholar
Bigoli, F., Braibanti, A., Pellinghelli, M. A. & Tiripicchio, A. (1972). Acta Cryst. B28, 962–966. CSD CrossRef CAS IUCr Journals Web of Science Google Scholar
Bruker (2005). SADABS. Bruker AXS Inc. Madison, Wisconsin, USA. Google Scholar
Bruker (2007). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Catterick, J., Hursthouse, M. B., New, D. B. & Thorhton, P. (1974). J. Chem. Soc. Chem. Commun. pp. 843–844. CrossRef Web of Science Google Scholar
Chen, H. J. & Chen, X. M. (2002). Inorg. Chim. Acta, 329, 13–21. Web of Science CSD CrossRef CAS Google Scholar
Farrugia, L. J. (1999). J. Appl. Cryst. 32, 837–838. CrossRef CAS IUCr Journals Google Scholar
Greenaway, F. T., Pezeshk, A., Cordes, A. W., Noble, M. C. & Sorenson, J. R. J. (1984). Inorg. Chim. Acta, 93, 67–71. CSD CrossRef CAS Web of Science Google Scholar
Hauptmann, R., Kondo, M. & Kitagawa, S. (2000). Z. Kristallogr. New Cryst. Struct. 215, 169–172. CAS Google Scholar
Hökelek, T., Dal, H., Tercan, B., Aybirdi, Ö. & Necefoğlu, H. (2009b). Acta Cryst. E65, m627–m628. Web of Science CSD CrossRef IUCr Journals Google Scholar
Hökelek, T., Dal, H., Tercan, B., Aybirdi, Ö. & Necefoğlu, H. (2009c). Acta Cryst. E65, m1037–m1038. Web of Science CSD CrossRef IUCr Journals Google Scholar
Hökelek, T., Dal, H., Tercan, B., Aybirdi, Ö. & Necefoğlu, H. (2009d). Acta Cryst. E65, m1365–m1366. Web of Science CrossRef IUCr Journals Google Scholar
Hökelek, T. & Necefoğlu, H. (1996). Acta Cryst. C52, 1128–1131. CSD CrossRef Web of Science IUCr Journals Google Scholar
Hökelek, T., Yılmaz, F., Tercan, B., Gürgen, F. & Necefoğlu, H. (2009a). Acta Cryst. E65, m1416–m1417. Web of Science CrossRef IUCr Journals Google Scholar
Krishnamachari, K. A. V. R. (1974). Am. J. Clin. Nutr. 27, 108–111. CAS PubMed Web of Science Google Scholar
Macrae, C. F., Edgington, P. R., McCabe, P., Pidcock, E., Shields, G. P., Taylor, R., Towler, M. & van de Streek, J. (2006). J. Appl. Cryst. 39, 453–457. Web of Science CrossRef CAS IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Shnulin, A. N., Nadzhafov, G. N., Amiraslanov, I. R., Usubaliev, B. T. & Mamedov, Kh. S. (1981). Koord. Khim. 7, 1409–1416. CAS Google Scholar
Spek, A. L. (2009). Acta Cryst. D65, 148–155. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Transition metal complexes with biochemical molecules show interesting physical and/or chemical properties, through which they may find applications in biological systems (Antolini et al., 1982). Some benzoic acid derivatives, such as 4-aminobenzoic acid, have been extensively reported in coordination chemistry, as bifunctional organic ligands, due to the varieties of their coordination modes (Chen & Chen, 2002; Amiraslanov et al., 1979; Hauptmann et al., 2000). Nicotinamide (NA) is one form of niacin. A deficiency of this vitamin leads to loss of copper from the body, known as pellagra disease. Victims of pellagra show unusually high serum and urinary copper levels (Krishnamachari, 1974). The nicotinic acid derivative N,N-Diethylnicotinamide (DENA) is an important respiratory stimulant (Bigoli et al., 1972).
The structure-function-coordination relationships of the arylcarboxylate ion in CdII complexes of benzoic acid derivatives may also change depending on the nature and position of the substituted groups on the benzene ring, the nature of the additional ligand molecule or solvent, and the pH and temperature of synthesis as in Mn(II) complexes (Shnulin et al., 1981; Antsyshkina et al., 1980; Adiwidjaja et al., 1978). When pyridine and its derivatives are used instead of water molecules, the structure is completely different (Catterick et al., 1974). We report herein the synthesis and the structure of the title compound, (I).
The title compound, (I), consists of dimeric units located around a crystallographic symmetry centre and made up of two Cd cations, four 4-(dimethylamino)benzoato (DMAB) anions, two nicotinamide (NA) ligands and two water molecules (Fig. 1). Each Cd(II) unit is chelated by the carboxylate O atoms of the two DMAB anions, and the two monomeric units are bridged through the two oxygen atoms of the two carboxylate groups about an inversion center. The coordination number of each CdII atom is seven. The Cd1···Cd1i distance is 3.8121 (2) Å and O4—Cd1—O4i angle is 76.87 (4)° (symmetry code: (i) -x, -y, 1 - z).
The average Cd—O bond length (Table 1) is 2.4302 (12) Å, and the Cd atom is displaced out of the least-squares planes of the carboxylate groups (O1/C1/O2) and (O3/C10/O4) by 0.4160 (1) and 0.6395 (1) Å, respectively. In (I), the O1—Cd1—O2 and O3—Cd1—O4 angles are 55.96 (4) and 53.78 (4) °, respectively. The corresponding O—M—O (where M is a metal) angles are 52.91 (4)° and 53.96 (4)° in [Cd(C8H5O3)2(C6H6N2O)2(H2O)].H2O (Hökelek et al., 2009a), 60.70 (4)° in [Co(C9H10NO2)2(C6H6N2O)(H2O)2] (Hökelek et al., 2009b), 58.45 (9)° in [Mn(C9H10NO2)2(C6H6N2O)(H2O)2] (Hökelek et al., 2009c), 60.03 (6)° in [Zn(C8H8NO2)2(C6H6N2O)2].H2O (Hökelek et al., 2009 d), 58.3 (3)° in [Zn2(DENA)2(C7H5O3)4].2H2O (Hökelek & Necefoğlu, 1996) and 55.2 (1)° in [Cu(Asp)2(py)2] (where Asp is acetylsalicylate and py is pyridine) (Greenaway et al., 1984).
The dihedral angles between the planar carboxylate groups and the adjacent benzene rings A (C2—C7) and B (C11—C16) are 11.48 (17) and 12.78 (13) °, respectively, while those between rings A, B, C (N3/C19—C23), D (Cd1/O1/O2/C1) and E (Cd1/O3/O4/C10) are A/B = 78.35 (7), A/C = 68.85 (6), B/C = 75.32 (6) and D/E = 61.98 (5)°.
In the crystal structure, intermolecular O—H···O, N—H···O and C—H···O hydrogen bonds (Table 2) link the molecules into a three dimensional network, in which they may be effective in the stabilization of the structure. The π–π contact between the pyridine rings, Cg3—Cg3i [symmetry code: (i) 1 - x, -1 - y, 1 - z, where Cg3 is the centroid of the ring C (N3/C19—C23)] may further stabilize the structure, with centroid-centroid distance of 3.974 (1) Å. There also exist two weak C—H···π interactions (Table 2).