organic compounds
1-Diphenylmethyl-4-ethylpiperazine-1,4-diium dichloride
aInstitute of Functional Biomolecules, State Key Laboratory of Pharmaceutical Biotechnology, Nanjing University, Nanjing 210093, People's Republic of China, and bDepartment of General Surgery, Center of Minimally Invasive Surgery, the 81st Hospital of PLA, Nanjing 210002, People's Republic of China
*Correspondence e-mail: qiaohy2010@gmail.com
In the title compound, C19H26N22+·2Cl−, the piperazinediium ring exhibits a chair conformation. The dihedral angle between the two benzene ring planes is 76.45 (13)°. Both amine-group H atoms participate in hydrogen bonding with the two Cl atoms.
Related literature
The title compound was obtained in our search for a strong anti-Helicobacter pylori secondary metabolite. For general background to H. pylori, see: Gebert et al. (2003); Li et al. (2007); Moran & Upton (1986). For bond lengths and angles in related structures, see: Raves et al. (1992); Ilangovan et al. (2007).
Experimental
Crystal data
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Refinement
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Data collection: CAD-4 Software (Enraf–Nonius, 1989); cell CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
10.1107/S1600536810024530/zq2043sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: 10.1107/S1600536810024530/zq2043Isup2.hkl
The cultivation of Fusarium sp. AMB-111, an endophytic fungus in Quercus variabilis, extraction and isolation were described in a preceding communication. A residue (149 g) from the dark brown tarry mass was obtained after depositing
which was then subjected to (CC) on silica gel (1300 g, 200–300 mesh), eluting with chloroform/methanol (1:0–0:1) to give seven fractions (F-1: 28.3 g, F-2: 12.2 g, F-3: 12.5 g, F-4: 14.0 g, F-5: 13.7 g, F-6: 12.3 g and F-7: 27.4 g). F-2, showing pronounced anti-Helicobacter pylori activity, was re-chromatographed over Si-gel column eluting with chloroform/acetone (50:1–4:1) to afford four subfractions (F-2–1: 4.5 g, F-2–2: 1.4 g, F-2–3: 2.3 g and F-2–4: 2.0 g). F-2–2 was subjected to gel filtration over Sephadex LH-20 with chloroform/methanol (1:1), followed by recrystalization repeatedly to give the title compound, a yellow crystal (300 mg).All H atoms were positioned geometrically (C—H = 0.93 Å for the aromatic H atoms and C—H = 0.96 Å for the aliphatic H atoms) and were refined as riding, with Uiso(H) = 1.2Ueq(C) and Uiso(H) = 1.2Ueq(N).
Data collection: CAD-4 Software (Enraf–Nonius, 1989); cell
CAD-4 Software (Enraf–Nonius, 1989); data reduction: XCAD4 (Harms & Wocadlo, 1995); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. The structure of the title compound showing 30% probability displacement ellipsoids and the atom-numbering scheme. |
C19H26N22+·2Cl− | F(000) = 752 |
Mr = 353.32 | Dx = 1.198 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 25 reflections |
a = 15.069 (3) Å | θ = 9–12° |
b = 7.2950 (15) Å | µ = 0.33 mm−1 |
c = 18.565 (4) Å | T = 293 K |
β = 106.35 (3)° | Block, yellow |
V = 1958.3 (7) Å3 | 0.30 × 0.20 × 0.10 mm |
Z = 4 |
Enraf–Nonius CAD-4 diffractometer | 2101 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.028 |
Graphite monochromator | θmax = 25.3°, θmin = 1.4° |
ω/2θ scan | h = 0→18 |
Absorption correction: ψ scan (North et al., 1968) | k = 0→8 |
Tmin = 0.907, Tmax = 0.968 | l = −22→21 |
3684 measured reflections | 200 standard reflections every 3 reflections |
3542 independent reflections | intensity decay: 1% |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.062 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.157 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | w = 1/[σ2(Fo2) + (0.065P)2 + 0.1129P] where P = (Fo2 + 2Fc2)/3 |
3542 reflections | (Δ/σ)max < 0.001 |
216 parameters | Δρmax = 0.38 e Å−3 |
0 restraints | Δρmin = −0.25 e Å−3 |
C19H26N22+·2Cl− | V = 1958.3 (7) Å3 |
Mr = 353.32 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 15.069 (3) Å | µ = 0.33 mm−1 |
b = 7.2950 (15) Å | T = 293 K |
c = 18.565 (4) Å | 0.30 × 0.20 × 0.10 mm |
β = 106.35 (3)° |
Enraf–Nonius CAD-4 diffractometer | 2101 reflections with I > 2σ(I) |
Absorption correction: ψ scan (North et al., 1968) | Rint = 0.028 |
Tmin = 0.907, Tmax = 0.968 | 200 standard reflections every 3 reflections |
3684 measured reflections | intensity decay: 1% |
3542 independent reflections |
R[F2 > 2σ(F2)] = 0.062 | 0 restraints |
wR(F2) = 0.157 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.03 | Δρmax = 0.38 e Å−3 |
3542 reflections | Δρmin = −0.25 e Å−3 |
216 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.6307 (3) | 0.4082 (10) | 0.0245 (3) | 0.0936 (17) | |
H1A | 0.6052 | 0.4038 | −0.0273 | 0.112* | |
C2 | 0.6600 (4) | 0.2480 (8) | 0.0637 (3) | 0.0916 (16) | |
H2A | 0.6549 | 0.1369 | 0.0383 | 0.110* | |
C3 | 0.6968 (3) | 0.2534 (6) | 0.1407 (2) | 0.0710 (13) | |
H3A | 0.7158 | 0.1459 | 0.1676 | 0.085* | |
C4 | 0.7053 (2) | 0.4206 (5) | 0.17766 (19) | 0.0473 (9) | |
C5 | 0.6766 (3) | 0.5794 (6) | 0.1372 (2) | 0.0576 (10) | |
H5A | 0.6830 | 0.6915 | 0.1619 | 0.069* | |
C6 | 0.6387 (3) | 0.5729 (8) | 0.0607 (3) | 0.0816 (14) | |
H6A | 0.6187 | 0.6799 | 0.0338 | 0.098* | |
C7 | 0.7408 (2) | 0.4406 (4) | 0.26239 (18) | 0.0404 (8) | |
H7A | 0.7627 | 0.5672 | 0.2719 | 0.049* | |
C8 | 0.6648 (2) | 0.4179 (5) | 0.30018 (19) | 0.0444 (9) | |
C9 | 0.6408 (3) | 0.5678 (5) | 0.3367 (2) | 0.0572 (10) | |
H9A | 0.6747 | 0.6758 | 0.3413 | 0.069* | |
C10 | 0.5665 (3) | 0.5563 (7) | 0.3663 (2) | 0.0754 (13) | |
H10A | 0.5506 | 0.6578 | 0.3903 | 0.090* | |
C11 | 0.5164 (3) | 0.4010 (8) | 0.3610 (2) | 0.0766 (14) | |
H11A | 0.4664 | 0.3957 | 0.3810 | 0.092* | |
C12 | 0.5400 (3) | 0.2510 (7) | 0.3258 (2) | 0.0729 (13) | |
H12A | 0.5056 | 0.1437 | 0.3222 | 0.087* | |
C13 | 0.6142 (3) | 0.2571 (6) | 0.2956 (2) | 0.0606 (11) | |
H13A | 0.6300 | 0.1541 | 0.2724 | 0.073* | |
C14 | 0.9003 (2) | 0.3678 (4) | 0.26354 (17) | 0.0410 (8) | |
H14A | 0.9148 | 0.4970 | 0.2721 | 0.049* | |
H14B | 0.8801 | 0.3476 | 0.2097 | 0.049* | |
C15 | 0.9859 (2) | 0.2566 (5) | 0.29714 (17) | 0.0432 (9) | |
H15A | 0.9727 | 0.1281 | 0.2854 | 0.052* | |
H15B | 1.0342 | 0.2941 | 0.2751 | 0.052* | |
C16 | 0.9435 (2) | 0.2275 (5) | 0.41299 (18) | 0.0458 (9) | |
H16A | 0.9638 | 0.2468 | 0.4669 | 0.055* | |
H16B | 0.9295 | 0.0983 | 0.4039 | 0.055* | |
C17 | 0.8575 (2) | 0.3387 (5) | 0.37957 (17) | 0.0464 (9) | |
H17A | 0.8093 | 0.2996 | 0.4015 | 0.056* | |
H17B | 0.8705 | 0.4668 | 0.3921 | 0.056* | |
C18 | 1.1074 (3) | 0.1783 (5) | 0.4132 (2) | 0.0553 (10) | |
H18A | 1.1505 | 0.2061 | 0.3845 | 0.066* | |
H18B | 1.0950 | 0.0476 | 0.4091 | 0.066* | |
C19 | 1.1516 (3) | 0.2259 (6) | 0.4946 (2) | 0.0720 (13) | |
H19A | 1.2073 | 0.1561 | 0.5132 | 0.108* | |
H19B | 1.1095 | 0.1975 | 0.5234 | 0.108* | |
H19C | 1.1660 | 0.3543 | 0.4989 | 0.108* | |
Cl1 | 1.05758 (8) | 0.68359 (12) | 0.40163 (5) | 0.0639 (4) | |
Cl2 | 0.80657 (8) | −0.09301 (13) | 0.27873 (7) | 0.0756 (4) | |
H1B | 0.807 (2) | 0.193 (5) | 0.2866 (18) | 0.059 (11)* | |
H2B | 1.033 (2) | 0.392 (5) | 0.3885 (19) | 0.056 (11)* | |
N1 | 0.82357 (19) | 0.3192 (4) | 0.29633 (14) | 0.0370 (7) | |
N2 | 1.0189 (2) | 0.2800 (4) | 0.37993 (15) | 0.0401 (7) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.082 (4) | 0.141 (5) | 0.045 (3) | −0.003 (4) | −0.003 (2) | −0.009 (3) |
C2 | 0.105 (4) | 0.097 (4) | 0.064 (3) | −0.014 (3) | 0.010 (3) | −0.028 (3) |
C3 | 0.095 (3) | 0.062 (3) | 0.047 (3) | −0.010 (3) | 0.005 (2) | −0.012 (2) |
C4 | 0.044 (2) | 0.054 (2) | 0.044 (2) | −0.0073 (19) | 0.0123 (17) | −0.0052 (19) |
C5 | 0.057 (3) | 0.061 (3) | 0.052 (2) | 0.004 (2) | 0.011 (2) | 0.006 (2) |
C6 | 0.078 (3) | 0.100 (4) | 0.059 (3) | 0.013 (3) | 0.007 (3) | 0.012 (3) |
C7 | 0.049 (2) | 0.0257 (17) | 0.047 (2) | −0.0090 (16) | 0.0137 (17) | −0.0047 (15) |
C8 | 0.044 (2) | 0.045 (2) | 0.044 (2) | −0.0045 (18) | 0.0120 (17) | −0.0011 (17) |
C9 | 0.067 (3) | 0.053 (2) | 0.058 (2) | −0.001 (2) | 0.027 (2) | −0.0058 (19) |
C10 | 0.081 (3) | 0.085 (4) | 0.071 (3) | 0.010 (3) | 0.039 (3) | −0.010 (3) |
C11 | 0.062 (3) | 0.108 (4) | 0.064 (3) | −0.001 (3) | 0.026 (2) | 0.009 (3) |
C12 | 0.060 (3) | 0.086 (3) | 0.076 (3) | −0.028 (3) | 0.024 (2) | 0.003 (3) |
C13 | 0.064 (3) | 0.062 (3) | 0.057 (2) | −0.012 (2) | 0.019 (2) | −0.005 (2) |
C14 | 0.051 (2) | 0.0358 (19) | 0.0404 (19) | −0.0036 (17) | 0.0191 (17) | −0.0005 (15) |
C15 | 0.060 (2) | 0.0354 (18) | 0.0395 (19) | −0.0084 (17) | 0.0220 (17) | −0.0077 (15) |
C16 | 0.061 (2) | 0.043 (2) | 0.0389 (19) | −0.0094 (19) | 0.0220 (18) | −0.0034 (16) |
C17 | 0.055 (2) | 0.050 (2) | 0.039 (2) | −0.0078 (19) | 0.0220 (17) | −0.0059 (17) |
C18 | 0.059 (2) | 0.040 (2) | 0.063 (2) | 0.008 (2) | 0.012 (2) | −0.0043 (19) |
C19 | 0.068 (3) | 0.077 (3) | 0.064 (3) | 0.011 (2) | 0.005 (2) | −0.001 (2) |
Cl1 | 0.1106 (9) | 0.0332 (5) | 0.0560 (6) | −0.0187 (5) | 0.0369 (6) | −0.0078 (4) |
Cl2 | 0.0951 (9) | 0.0287 (5) | 0.0988 (9) | −0.0145 (5) | 0.0205 (7) | −0.0052 (5) |
N1 | 0.0494 (18) | 0.0276 (14) | 0.0358 (15) | −0.0083 (14) | 0.0151 (13) | −0.0055 (12) |
N2 | 0.0539 (19) | 0.0269 (16) | 0.0408 (17) | −0.0027 (14) | 0.0155 (14) | −0.0052 (13) |
C1—C6 | 1.366 (7) | C13—H13A | 0.9300 |
C1—C2 | 1.382 (7) | C14—N1 | 1.493 (4) |
C1—H1A | 0.9300 | C14—C15 | 1.502 (4) |
C2—C3 | 1.381 (6) | C14—H14A | 0.9700 |
C2—H2A | 0.9300 | C14—H14B | 0.9700 |
C3—C4 | 1.388 (5) | C15—N2 | 1.486 (4) |
C3—H3A | 0.9300 | C15—H15A | 0.9700 |
C4—C5 | 1.382 (5) | C15—H15B | 0.9700 |
C4—C7 | 1.519 (4) | C16—N2 | 1.486 (4) |
C5—C6 | 1.373 (5) | C16—C17 | 1.506 (5) |
C5—H5A | 0.9300 | C16—H16A | 0.9700 |
C6—H6A | 0.9300 | C16—H16B | 0.9700 |
C7—C8 | 1.512 (5) | C17—N1 | 1.492 (4) |
C7—N1 | 1.514 (4) | C17—H17A | 0.9700 |
C7—H7A | 0.9800 | C17—H17B | 0.9700 |
C8—C9 | 1.387 (5) | C18—N2 | 1.499 (4) |
C8—C13 | 1.388 (5) | C18—C19 | 1.510 (5) |
C9—C10 | 1.382 (5) | C18—H18A | 0.9700 |
C9—H9A | 0.9300 | C18—H18B | 0.9700 |
C10—C11 | 1.350 (6) | C19—H19A | 0.9600 |
C10—H10A | 0.9300 | C19—H19B | 0.9600 |
C11—C12 | 1.371 (6) | C19—H19C | 0.9600 |
C11—H11A | 0.9300 | N1—H1B | 0.96 (4) |
C12—C13 | 1.386 (5) | N2—H2B | 0.85 (4) |
C12—H12A | 0.9300 | ||
C6—C1—C2 | 120.9 (4) | N1—C14—H14B | 109.2 |
C6—C1—H1A | 119.6 | C15—C14—H14B | 109.2 |
C2—C1—H1A | 119.6 | H14A—C14—H14B | 107.9 |
C3—C2—C1 | 119.8 (5) | N2—C15—C14 | 111.4 (3) |
C3—C2—H2A | 120.1 | N2—C15—H15A | 109.3 |
C1—C2—H2A | 120.1 | C14—C15—H15A | 109.3 |
C2—C3—C4 | 119.4 (4) | N2—C15—H15B | 109.3 |
C2—C3—H3A | 120.3 | C14—C15—H15B | 109.3 |
C4—C3—H3A | 120.3 | H15A—C15—H15B | 108.0 |
C5—C4—C3 | 119.8 (3) | N2—C16—C17 | 111.1 (3) |
C5—C4—C7 | 116.6 (3) | N2—C16—H16A | 109.4 |
C3—C4—C7 | 123.5 (3) | C17—C16—H16A | 109.4 |
C6—C5—C4 | 120.6 (4) | N2—C16—H16B | 109.4 |
C6—C5—H5A | 119.7 | C17—C16—H16B | 109.4 |
C4—C5—H5A | 119.7 | H16A—C16—H16B | 108.0 |
C1—C6—C5 | 119.5 (5) | N1—C17—C16 | 112.3 (3) |
C1—C6—H6A | 120.2 | N1—C17—H17A | 109.1 |
C5—C6—H6A | 120.2 | C16—C17—H17A | 109.1 |
C8—C7—N1 | 112.7 (3) | N1—C17—H17B | 109.1 |
C8—C7—C4 | 112.2 (3) | C16—C17—H17B | 109.1 |
N1—C7—C4 | 112.6 (3) | H17A—C17—H17B | 107.9 |
C8—C7—H7A | 106.3 | N2—C18—C19 | 112.9 (3) |
N1—C7—H7A | 106.3 | N2—C18—H18A | 109.0 |
C4—C7—H7A | 106.3 | C19—C18—H18A | 109.0 |
C9—C8—C13 | 118.8 (3) | N2—C18—H18B | 109.0 |
C9—C8—C7 | 118.4 (3) | C19—C18—H18B | 109.0 |
C13—C8—C7 | 122.6 (3) | H18A—C18—H18B | 107.8 |
C10—C9—C8 | 119.9 (4) | C18—C19—H19A | 109.5 |
C10—C9—H9A | 120.1 | C18—C19—H19B | 109.5 |
C8—C9—H9A | 120.1 | H19A—C19—H19B | 109.5 |
C11—C10—C9 | 121.4 (4) | C18—C19—H19C | 109.5 |
C11—C10—H10A | 119.3 | H19A—C19—H19C | 109.5 |
C9—C10—H10A | 119.3 | H19B—C19—H19C | 109.5 |
C10—C11—C12 | 119.4 (4) | C17—N1—C14 | 108.7 (3) |
C10—C11—H11A | 120.3 | C17—N1—C7 | 112.2 (3) |
C12—C11—H11A | 120.3 | C14—N1—C7 | 109.4 (2) |
C11—C12—C13 | 120.9 (4) | C17—N1—H1B | 106 (2) |
C11—C12—H12A | 119.5 | C14—N1—H1B | 110 (2) |
C13—C12—H12A | 119.5 | C7—N1—H1B | 110 (2) |
C12—C13—C8 | 119.6 (4) | C16—N2—C15 | 109.0 (3) |
C12—C13—H13A | 120.2 | C16—N2—C18 | 113.4 (3) |
C8—C13—H13A | 120.2 | C15—N2—C18 | 111.7 (3) |
N1—C14—C15 | 112.0 (3) | C16—N2—H2B | 111 (2) |
N1—C14—H14A | 109.2 | C15—N2—H2B | 107 (2) |
C15—C14—H14A | 109.2 | C18—N2—H2B | 104 (2) |
C6—C1—C2—C3 | 0.9 (8) | C10—C11—C12—C13 | −0.1 (7) |
C1—C2—C3—C4 | −1.0 (8) | C11—C12—C13—C8 | −0.8 (6) |
C2—C3—C4—C5 | 0.2 (6) | C9—C8—C13—C12 | 1.5 (6) |
C2—C3—C4—C7 | 177.2 (4) | C7—C8—C13—C12 | −174.2 (3) |
C3—C4—C5—C6 | 0.8 (6) | N1—C14—C15—N2 | −57.9 (4) |
C7—C4—C5—C6 | −176.4 (4) | N2—C16—C17—N1 | 57.7 (4) |
C2—C1—C6—C5 | 0.1 (8) | C16—C17—N1—C14 | −55.1 (4) |
C4—C5—C6—C1 | −0.9 (7) | C16—C17—N1—C7 | −176.3 (3) |
C5—C4—C7—C8 | 90.9 (4) | C15—C14—N1—C17 | 55.1 (3) |
C3—C4—C7—C8 | −86.2 (4) | C15—C14—N1—C7 | 177.9 (2) |
C5—C4—C7—N1 | −140.7 (3) | C8—C7—N1—C17 | −51.4 (3) |
C3—C4—C7—N1 | 42.2 (5) | C4—C7—N1—C17 | −179.6 (3) |
N1—C7—C8—C9 | 117.2 (4) | C8—C7—N1—C14 | −172.2 (3) |
C4—C7—C8—C9 | −114.5 (4) | C4—C7—N1—C14 | 59.7 (3) |
N1—C7—C8—C13 | −67.0 (4) | C17—C16—N2—C15 | −57.0 (4) |
C4—C7—C8—C13 | 61.3 (4) | C17—C16—N2—C18 | 177.9 (3) |
C13—C8—C9—C10 | −1.4 (6) | C14—C15—N2—C16 | 57.4 (3) |
C7—C8—C9—C10 | 174.5 (3) | C14—C15—N2—C18 | −176.6 (3) |
C8—C9—C10—C11 | 0.5 (7) | C19—C18—N2—C16 | −66.6 (4) |
C9—C10—C11—C12 | 0.3 (7) | C19—C18—N2—C15 | 169.8 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1B···Cl2 | 0.96 (4) | 2.09 (4) | 3.028 (3) | 165 (3) |
N2—H2B···Cl1 | 0.85 (4) | 2.16 (4) | 3.006 (3) | 174 (3) |
Experimental details
Crystal data | |
Chemical formula | C19H26N22+·2Cl− |
Mr | 353.32 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 15.069 (3), 7.2950 (15), 18.565 (4) |
β (°) | 106.35 (3) |
V (Å3) | 1958.3 (7) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.33 |
Crystal size (mm) | 0.30 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Enraf–Nonius CAD-4 diffractometer |
Absorption correction | ψ scan (North et al., 1968) |
Tmin, Tmax | 0.907, 0.968 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 3684, 3542, 2101 |
Rint | 0.028 |
(sin θ/λ)max (Å−1) | 0.601 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.062, 0.157, 1.03 |
No. of reflections | 3542 |
No. of parameters | 216 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.38, −0.25 |
Computer programs: CAD-4 Software (Enraf–Nonius, 1989), XCAD4 (Harms & Wocadlo, 1995), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N1—H1B···Cl2 | 0.96 (4) | 2.09 (4) | 3.028 (3) | 165 (3) |
N2—H2B···Cl1 | 0.85 (4) | 2.16 (4) | 3.006 (3) | 174 (3) |
References
Enraf–Nonius (1989). CAD-4 Software. Enraf–Nonius, Delft, The Netherlands. Google Scholar
Gebert, B., Fischer, W., Weiss, E., Hoffmann, R. & Haas, R. (2003). Science, 301, 1099–1102. Web of Science CrossRef PubMed CAS Google Scholar
Harms, K. & Wocadlo, S. (1995). XCAD4. University of Marburg, Germany. Google Scholar
Ilangovan, A., Kumar, R. G., Liang, H., Balasubramani, K. & Muthiah, P. T. (2007). Acta Cryst. E63, o4087. Web of Science CSD CrossRef IUCr Journals Google Scholar
Li, H.-Q., Xu, C., Li, H.-S., Xiao, Z.-P., Shi, L. & Zhu, H.-L. (2007). ChemMedChem, 2, 1361–1369. Web of Science CrossRef PubMed CAS Google Scholar
Moran, A. P. & Upton, M. E. (1986). J. Appl. Bacteriol. 60, 103–110. CrossRef CAS PubMed Web of Science Google Scholar
North, A. C. T., Phillips, D. C. & Mathews, F. S. (1968). Acta Cryst. A24, 351–359. CrossRef IUCr Journals Web of Science Google Scholar
Raves, M. L., Kanters, J. A. & Tollenaere, J. P. (1992). Acta Cryst. C48, 1712–1713. CSD CrossRef CAS Web of Science IUCr Journals Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The human pathogenic bacterium Helicobacter pylori has been ascertained to be an antiological agent for chronic active gastritis and a significant determinant in peptic and duodenal ulcer diseases (Gebert et al., 2003; Li et al., 2007). Sustained infection with this bacterium could lead to development of gastric cancer (Moran & Upton, 1986). Endophytic metabolites are recognized as a versatile arsenal of antimicrobial agents, since some endophytes have been shown to possess superior biosynthetic capabilities owing to their presumable gene recombination with the host, while residing and reproducing inside the healthy plant tissues. Our particular attention was extended to anti-Helicobacter pylori constituents. A detailed bioassay-guided fractionation of the culture extract of Fusarium sp., an endophytic fungus in Quercus variabilis Bl., was performed to afford a strong anti-H. pylori secondary metabolite. In this paper we report the structural information for the title compound, C19H26N22+.2Cl-, for which the asymmetric unit contains one 1-(diphenylmethyl)-4-ethylpiperazine-1,4-diium dication and two chloride anions. The bond lengths and angles of the title compound are in normal ranges when comparing with similar structures reported previously (Raves et al., 1992; Ilangovan et al., 2007). In the title compound, the piperazine fragment is in a chair conformation. The dihedral angle between the two benzene ring planes is 76.45 (13) °. Both amine-group H atoms participate in hydrogen bonding with the two Cl atoms.