organic compounds
14-Deoxyxyloccensin K from Chisocheton ceramicus (Meliaceae)
aDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia, and bDepartment of Pharmacy, Faculty of Medicine, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: seikweng@um.edu.my
The title limonoid 14-deoxyxyloccensin K, C27H34O7, isolated from Chisocheton ceramicus (Meliaceae), features an oxygen linkage between carbon-3 and carbon-8 along with a tetrahydrofuryl sub-unit. The six-membered rings adopt chair configurations and the tetrahydrofuryl sub-unit has an envelope shape.
Related literature
For the synthesis of 14-deoxyxyloccensin K from xyloccensin K, see: Kim et al. (2004). For the of xyloccensin K, see: Kokpol et al. (1996). For a description of other xyloccensin limonoids, see: Wu et al. (2003).
Experimental
Crystal data
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S160053681002564X/bt5284sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S160053681002564X/bt5284Isup2.hkl
The bark of C. ceramicine (900 g), collected in Kedah, Peninsular Malaysia, was dried, ground, and extracted successively with methanol. The extract (200 g) was partitioned with 10% aqueous methanol and ethyl acetate. The ethyl acetate-soluble fraction (10 g) was subjected to silica gel column-chromatography (hexane/ethyl acetate 1:0 to 0:1). The fraction eluted with hexane/ethyl acetate (2:8) was purified on a silica gel column (ethyl acetate:acetone:hexane 65:10:25). Further HPLC purification followed by recrystallization from aqueous methanol yielded colorless crystals.
H-atoms were placed in calculated positions (C—H 0.95 to 1.00 Å) and were included in the
in the riding model approximation, with U(H) set to 1.2 to 1.5U(C).The
was set to that of xyloccensin K, which was isolated from the seeds of Xylocarpus granatum (Kokpol et al., 1996).2348 Friedel pairs were merged.
The limonoid, xyloccensin K, which was isolated from the seeds of Xylocarpus granatum, has a structure similar to those of other limonoids but it features an ether linkage connecting the C3 and C8 atoms along with a tetrahydrofuryl sub-unit (Kokpol et al., 1996). As the compound is also a tertiary alcohol, the compound can also be deoxygenated by a free-radical process (Kim et al., 2004). The synthetic compound was fully characterized by spectroscopic methods. This deoxygenated compound (Scheme I, Fig. 1) was isolated from the bark of Chisocheton ceramicus in the present study; the spectroscopic assignments are confirmed by the
determination.For the synthesis of 14-deoxyxyloccensin K from xyloccensin K, see: Kim et al. (2004). For the
of xyloccensin K, see: Kokpol et al. (1996). For a description of other xyloccensin limonoids, see: Wu et al. (2003).Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: X-SEED (Barbour, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).Fig. 1. Anisotropic displacement ellipsoid plot (Barbour, 2001) of C27H34O7 at the 70% probability level; hydrogen atoms are drawn as spheres of arbitrary radius. |
C27H34O7 | F(000) = 1008 |
Mr = 470.54 | Dx = 1.321 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 5382 reflections |
a = 8.7174 (6) Å | θ = 2.5–27.9° |
b = 11.7401 (8) Å | µ = 0.10 mm−1 |
c = 23.1106 (16) Å | T = 100 K |
V = 2365.2 (3) Å3 | Triangular plate, colorless |
Z = 4 | 0.25 × 0.15 × 0.05 mm |
Bruker SMART APEX diffractometer | 2674 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.053 |
Graphite monochromator | θmax = 27.5°, θmin = 1.8° |
ω scans | h = −11→10 |
22814 measured reflections | k = −15→15 |
3083 independent reflections | l = −29→29 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.038 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.098 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0502P)2 + 0.7549P] where P = (Fo2 + 2Fc2)/3 |
3083 reflections | (Δ/σ)max = 0.001 |
307 parameters | Δρmax = 0.29 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
C27H34O7 | V = 2365.2 (3) Å3 |
Mr = 470.54 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 8.7174 (6) Å | µ = 0.10 mm−1 |
b = 11.7401 (8) Å | T = 100 K |
c = 23.1106 (16) Å | 0.25 × 0.15 × 0.05 mm |
Bruker SMART APEX diffractometer | 2674 reflections with I > 2σ(I) |
22814 measured reflections | Rint = 0.053 |
3083 independent reflections |
R[F2 > 2σ(F2)] = 0.038 | 0 restraints |
wR(F2) = 0.098 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.29 e Å−3 |
3083 reflections | Δρmin = −0.20 e Å−3 |
307 parameters |
x | y | z | Uiso*/Ueq | ||
O1 | 0.7791 (2) | 0.99435 (15) | 0.16955 (8) | 0.0278 (4) | |
O2 | 0.34822 (19) | 0.79390 (12) | 0.19484 (7) | 0.0208 (4) | |
O3 | 0.1819 (2) | 0.65454 (13) | 0.19079 (8) | 0.0267 (4) | |
O4 | 0.20193 (19) | 0.82792 (12) | 0.31200 (6) | 0.0177 (3) | |
O5 | 0.5624 (2) | 1.06497 (15) | 0.44621 (7) | 0.0281 (4) | |
O6 | 0.4725 (2) | 1.10625 (17) | 0.53467 (8) | 0.0333 (5) | |
O7 | −0.0536 (2) | 0.96552 (15) | 0.46084 (8) | 0.0306 (4) | |
C1 | 0.6616 (3) | 0.9897 (2) | 0.20877 (11) | 0.0242 (5) | |
H1 | 0.6643 | 1.0232 | 0.2462 | 0.029* | |
C2 | 0.7301 (3) | 0.9356 (2) | 0.12191 (12) | 0.0280 (6) | |
H2 | 0.7888 | 0.9241 | 0.0878 | 0.034* | |
C3 | 0.5866 (3) | 0.8964 (2) | 0.13033 (11) | 0.0250 (5) | |
H3 | 0.5268 | 0.8537 | 0.1037 | 0.030* | |
C4 | 0.5416 (3) | 0.93121 (19) | 0.18712 (10) | 0.0199 (5) | |
C5 | 0.3928 (3) | 0.90631 (18) | 0.21706 (10) | 0.0181 (5) | |
H5 | 0.4153 | 0.8975 | 0.2592 | 0.022* | |
C6 | 0.2663 (3) | 0.99724 (19) | 0.21106 (10) | 0.0174 (5) | |
C7 | 0.1137 (3) | 0.94872 (18) | 0.23416 (10) | 0.0180 (5) | |
H7 | 0.0320 | 1.0060 | 0.2253 | 0.022* | |
C8 | 0.0746 (3) | 0.84036 (19) | 0.20019 (10) | 0.0199 (5) | |
H8A | −0.0151 | 0.8033 | 0.2185 | 0.024* | |
H8B | 0.0448 | 0.8621 | 0.1604 | 0.024* | |
C9 | 0.2029 (3) | 0.75607 (19) | 0.19700 (10) | 0.0201 (5) | |
C10 | 0.2485 (3) | 1.0343 (2) | 0.14753 (11) | 0.0237 (5) | |
H10A | 0.3462 | 1.0648 | 0.1334 | 0.036* | |
H10B | 0.1692 | 1.0932 | 0.1447 | 0.036* | |
H10C | 0.2187 | 0.9685 | 0.1240 | 0.036* | |
C11 | 0.3102 (3) | 1.10229 (18) | 0.24743 (10) | 0.0196 (5) | |
H11A | 0.4114 | 1.1305 | 0.2343 | 0.024* | |
H11B | 0.2341 | 1.1633 | 0.2403 | 0.024* | |
C12 | 0.3179 (3) | 1.07930 (19) | 0.31233 (10) | 0.0204 (5) | |
H12A | 0.3410 | 1.1513 | 0.3329 | 0.024* | |
H12B | 0.4023 | 1.0251 | 0.3203 | 0.024* | |
C13 | 0.1678 (3) | 1.03012 (18) | 0.33536 (10) | 0.0187 (5) | |
H13 | 0.0895 | 1.0914 | 0.3298 | 0.022* | |
C14 | 0.1096 (3) | 0.92757 (18) | 0.29983 (10) | 0.0182 (5) | |
C15 | −0.0487 (3) | 0.8923 (2) | 0.32228 (10) | 0.0210 (5) | |
H15A | −0.0979 | 0.8353 | 0.2967 | 0.025* | |
H15B | −0.1176 | 0.9586 | 0.3271 | 0.025* | |
C16 | −0.0026 (3) | 0.8406 (2) | 0.38075 (10) | 0.0215 (5) | |
H16 | −0.0819 | 0.7875 | 0.3966 | 0.026* | |
C17 | 0.1497 (3) | 0.77978 (19) | 0.36585 (10) | 0.0196 (5) | |
H17 | 0.1292 | 0.6967 | 0.3602 | 0.024* | |
C18 | 0.2718 (3) | 0.79431 (19) | 0.41271 (10) | 0.0204 (5) | |
C19 | 0.3077 (3) | 0.92499 (19) | 0.42077 (10) | 0.0200 (5) | |
H19 | 0.3949 | 0.9428 | 0.3942 | 0.024* | |
C20 | 0.1715 (3) | 1.00645 (19) | 0.40270 (10) | 0.0202 (5) | |
C21 | 0.0274 (3) | 0.9414 (2) | 0.41994 (10) | 0.0221 (5) | |
C22 | 0.4198 (3) | 0.7342 (2) | 0.39397 (10) | 0.0238 (5) | |
H22A | 0.3997 | 0.6527 | 0.3888 | 0.036* | |
H22B | 0.4985 | 0.7446 | 0.4238 | 0.036* | |
H22C | 0.4559 | 0.7669 | 0.3574 | 0.036* | |
C23 | 0.2093 (3) | 0.7351 (2) | 0.46731 (10) | 0.0269 (6) | |
H23A | 0.1894 | 0.6547 | 0.4588 | 0.040* | |
H23B | 0.1138 | 0.7721 | 0.4794 | 0.040* | |
H23C | 0.2851 | 0.7408 | 0.4985 | 0.040* | |
C24 | 0.1745 (3) | 1.1215 (2) | 0.43403 (11) | 0.0249 (5) | |
H24A | 0.0877 | 1.1680 | 0.4211 | 0.037* | |
H24B | 0.2707 | 1.1610 | 0.4252 | 0.037* | |
H24C | 0.1671 | 1.1090 | 0.4759 | 0.037* | |
C25 | 0.3663 (3) | 0.9470 (2) | 0.48241 (10) | 0.0245 (5) | |
H25A | 0.2762 | 0.9555 | 0.5081 | 0.029* | |
H25B | 0.4230 | 0.8785 | 0.4954 | 0.029* | |
C26 | 0.4692 (3) | 1.0497 (2) | 0.49100 (10) | 0.0254 (5) | |
C27 | 0.6748 (3) | 1.1553 (2) | 0.45213 (12) | 0.0317 (6) | |
H27A | 0.7375 | 1.1592 | 0.4170 | 0.047* | |
H27B | 0.7409 | 1.1395 | 0.4855 | 0.047* | |
H27C | 0.6220 | 1.2281 | 0.4579 | 0.047* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0202 (9) | 0.0236 (9) | 0.0395 (10) | −0.0015 (8) | −0.0016 (8) | 0.0028 (8) |
O2 | 0.0216 (9) | 0.0111 (7) | 0.0297 (9) | −0.0028 (7) | −0.0001 (7) | −0.0013 (6) |
O3 | 0.0285 (10) | 0.0143 (8) | 0.0372 (9) | −0.0041 (8) | −0.0022 (8) | −0.0015 (7) |
O4 | 0.0210 (9) | 0.0118 (7) | 0.0202 (7) | 0.0020 (6) | −0.0004 (7) | 0.0014 (6) |
O5 | 0.0338 (11) | 0.0255 (9) | 0.0250 (9) | −0.0024 (9) | −0.0002 (8) | −0.0053 (7) |
O6 | 0.0369 (12) | 0.0394 (11) | 0.0235 (9) | −0.0049 (10) | −0.0029 (9) | −0.0100 (8) |
O7 | 0.0355 (11) | 0.0244 (9) | 0.0319 (10) | 0.0036 (8) | 0.0113 (9) | −0.0022 (7) |
C1 | 0.0217 (12) | 0.0238 (12) | 0.0272 (12) | −0.0006 (10) | −0.0013 (10) | 0.0037 (10) |
C2 | 0.0304 (15) | 0.0207 (12) | 0.0328 (13) | 0.0014 (11) | 0.0034 (11) | −0.0013 (10) |
C3 | 0.0263 (14) | 0.0197 (11) | 0.0290 (13) | −0.0043 (10) | 0.0019 (11) | −0.0025 (10) |
C4 | 0.0211 (12) | 0.0140 (10) | 0.0248 (11) | −0.0005 (9) | −0.0033 (10) | 0.0020 (9) |
C5 | 0.0214 (12) | 0.0101 (10) | 0.0228 (11) | −0.0021 (9) | −0.0019 (9) | −0.0004 (8) |
C6 | 0.0165 (11) | 0.0131 (10) | 0.0225 (11) | −0.0015 (9) | −0.0041 (9) | 0.0019 (9) |
C7 | 0.0180 (12) | 0.0123 (10) | 0.0237 (11) | −0.0006 (9) | −0.0036 (9) | 0.0014 (8) |
C8 | 0.0194 (12) | 0.0173 (11) | 0.0231 (12) | −0.0026 (9) | −0.0046 (9) | −0.0013 (9) |
C9 | 0.0241 (13) | 0.0169 (10) | 0.0191 (11) | −0.0025 (9) | −0.0024 (10) | 0.0014 (8) |
C10 | 0.0268 (13) | 0.0189 (11) | 0.0255 (12) | −0.0012 (10) | −0.0043 (10) | 0.0044 (9) |
C11 | 0.0219 (13) | 0.0097 (9) | 0.0272 (11) | −0.0011 (9) | −0.0026 (10) | 0.0025 (8) |
C12 | 0.0237 (12) | 0.0130 (10) | 0.0246 (11) | −0.0029 (9) | −0.0017 (10) | −0.0029 (9) |
C13 | 0.0217 (12) | 0.0103 (9) | 0.0241 (11) | 0.0002 (9) | −0.0016 (9) | −0.0024 (8) |
C14 | 0.0178 (11) | 0.0114 (9) | 0.0253 (12) | 0.0010 (9) | −0.0014 (9) | −0.0005 (8) |
C15 | 0.0207 (12) | 0.0136 (10) | 0.0286 (12) | −0.0022 (9) | 0.0003 (10) | −0.0010 (9) |
C16 | 0.0227 (13) | 0.0149 (10) | 0.0269 (12) | 0.0005 (10) | 0.0026 (10) | 0.0002 (9) |
C17 | 0.0237 (13) | 0.0117 (10) | 0.0234 (11) | 0.0009 (9) | 0.0030 (10) | 0.0017 (8) |
C18 | 0.0269 (13) | 0.0148 (10) | 0.0196 (11) | 0.0034 (10) | −0.0006 (9) | −0.0005 (8) |
C19 | 0.0237 (13) | 0.0165 (10) | 0.0198 (11) | 0.0012 (10) | −0.0018 (10) | −0.0023 (9) |
C20 | 0.0231 (13) | 0.0159 (10) | 0.0218 (11) | 0.0018 (10) | −0.0005 (10) | −0.0026 (9) |
C21 | 0.0278 (13) | 0.0149 (11) | 0.0236 (12) | 0.0044 (10) | 0.0000 (10) | 0.0003 (9) |
C22 | 0.0282 (14) | 0.0195 (11) | 0.0237 (12) | 0.0063 (10) | −0.0016 (10) | −0.0007 (9) |
C23 | 0.0343 (15) | 0.0215 (12) | 0.0248 (12) | 0.0038 (11) | 0.0024 (11) | 0.0024 (10) |
C24 | 0.0270 (14) | 0.0171 (11) | 0.0307 (13) | 0.0028 (10) | −0.0005 (11) | −0.0055 (9) |
C25 | 0.0306 (14) | 0.0226 (12) | 0.0203 (11) | 0.0024 (11) | −0.0016 (10) | −0.0013 (9) |
C26 | 0.0287 (14) | 0.0279 (12) | 0.0197 (11) | 0.0055 (11) | −0.0058 (10) | −0.0020 (10) |
C27 | 0.0345 (16) | 0.0297 (13) | 0.0308 (13) | −0.0056 (13) | −0.0013 (12) | −0.0045 (11) |
O1—C2 | 1.368 (3) | C12—H12B | 0.9900 |
O1—C1 | 1.369 (3) | C13—C14 | 1.543 (3) |
O2—C9 | 1.343 (3) | C13—C20 | 1.581 (3) |
O2—C5 | 1.468 (3) | C13—H13 | 1.0000 |
O3—C9 | 1.215 (3) | C14—C15 | 1.531 (3) |
O4—C17 | 1.441 (3) | C15—C16 | 1.535 (3) |
O4—C14 | 1.448 (3) | C15—H15A | 0.9900 |
O5—C26 | 1.328 (3) | C15—H15B | 0.9900 |
O5—C27 | 1.450 (3) | C16—C21 | 1.514 (3) |
O6—C26 | 1.209 (3) | C16—C17 | 1.546 (3) |
O7—C21 | 1.214 (3) | C16—H16 | 1.0000 |
C1—C4 | 1.348 (3) | C17—C18 | 1.528 (3) |
C1—H1 | 0.9500 | C17—H17 | 1.0000 |
C2—C3 | 1.347 (4) | C18—C22 | 1.533 (3) |
C2—H2 | 0.9500 | C18—C23 | 1.540 (3) |
C3—C4 | 1.430 (3) | C18—C19 | 1.577 (3) |
C3—H3 | 0.9500 | C19—C25 | 1.535 (3) |
C4—C5 | 1.499 (3) | C19—C20 | 1.580 (3) |
C5—C6 | 1.541 (3) | C19—H19 | 1.0000 |
C5—H5 | 1.0000 | C20—C21 | 1.523 (4) |
C6—C10 | 1.539 (3) | C20—C24 | 1.533 (3) |
C6—C11 | 1.541 (3) | C22—H22A | 0.9800 |
C6—C7 | 1.543 (3) | C22—H22B | 0.9800 |
C7—C8 | 1.533 (3) | C22—H22C | 0.9800 |
C7—C14 | 1.538 (3) | C23—H23A | 0.9800 |
C7—H7 | 1.0000 | C23—H23B | 0.9800 |
C8—C9 | 1.495 (3) | C23—H23C | 0.9800 |
C8—H8A | 0.9900 | C24—H24A | 0.9800 |
C8—H8B | 0.9900 | C24—H24B | 0.9800 |
C10—H10A | 0.9800 | C24—H24C | 0.9800 |
C10—H10B | 0.9800 | C25—C26 | 1.516 (4) |
C10—H10C | 0.9800 | C25—H25A | 0.9900 |
C11—C12 | 1.525 (3) | C25—H25B | 0.9900 |
C11—H11A | 0.9900 | C27—H27A | 0.9800 |
C11—H11B | 0.9900 | C27—H27B | 0.9800 |
C12—C13 | 1.526 (3) | C27—H27C | 0.9800 |
C12—H12A | 0.9900 | ||
C2—O1—C1 | 106.2 (2) | C14—C15—C16 | 99.77 (19) |
C9—O2—C5 | 122.25 (18) | C14—C15—H15A | 111.8 |
C17—O4—C14 | 108.00 (17) | C16—C15—H15A | 111.8 |
C26—O5—C27 | 116.02 (19) | C14—C15—H15B | 111.8 |
C4—C1—O1 | 110.8 (2) | C16—C15—H15B | 111.8 |
C4—C1—H1 | 124.6 | H15A—C15—H15B | 109.5 |
O1—C1—H1 | 124.6 | C21—C16—C15 | 105.23 (19) |
C3—C2—O1 | 110.3 (2) | C21—C16—C17 | 110.2 (2) |
C3—C2—H2 | 124.9 | C15—C16—C17 | 102.18 (18) |
O1—C2—H2 | 124.9 | C21—C16—H16 | 112.8 |
C2—C3—C4 | 106.8 (2) | C15—C16—H16 | 112.8 |
C2—C3—H3 | 126.6 | C17—C16—H16 | 112.8 |
C4—C3—H3 | 126.6 | O4—C17—C18 | 110.38 (19) |
C1—C4—C3 | 105.9 (2) | O4—C17—C16 | 106.42 (18) |
C1—C4—C5 | 126.9 (2) | C18—C17—C16 | 112.89 (19) |
C3—C4—C5 | 127.3 (2) | O4—C17—H17 | 109.0 |
O2—C5—C4 | 104.05 (18) | C18—C17—H17 | 109.0 |
O2—C5—C6 | 113.69 (18) | C16—C17—H17 | 109.0 |
C4—C5—C6 | 116.28 (18) | C17—C18—C22 | 109.56 (19) |
O2—C5—H5 | 107.5 | C17—C18—C23 | 106.5 (2) |
C4—C5—H5 | 107.5 | C22—C18—C23 | 108.74 (19) |
C6—C5—H5 | 107.5 | C17—C18—C19 | 109.30 (18) |
C10—C6—C11 | 108.62 (18) | C22—C18—C19 | 108.3 (2) |
C10—C6—C5 | 110.7 (2) | C23—C18—C19 | 114.36 (19) |
C11—C6—C5 | 109.13 (18) | C25—C19—C18 | 109.83 (19) |
C10—C6—C7 | 110.34 (19) | C25—C19—C20 | 113.17 (19) |
C11—C6—C7 | 108.73 (19) | C18—C19—C20 | 114.12 (19) |
C5—C6—C7 | 109.28 (18) | C25—C19—H19 | 106.4 |
C8—C7—C14 | 111.49 (18) | C18—C19—H19 | 106.4 |
C8—C7—C6 | 108.70 (19) | C20—C19—H19 | 106.4 |
C14—C7—C6 | 114.90 (19) | C21—C20—C24 | 109.4 (2) |
C8—C7—H7 | 107.1 | C21—C20—C19 | 104.29 (18) |
C14—C7—H7 | 107.1 | C24—C20—C19 | 113.3 (2) |
C6—C7—H7 | 107.1 | C21—C20—C13 | 109.2 (2) |
C9—C8—C7 | 114.10 (19) | C24—C20—C13 | 108.09 (18) |
C9—C8—H8A | 108.7 | C19—C20—C13 | 112.45 (19) |
C7—C8—H8A | 108.7 | O7—C21—C16 | 123.2 (2) |
C9—C8—H8B | 108.7 | O7—C21—C20 | 124.5 (2) |
C7—C8—H8B | 108.7 | C16—C21—C20 | 112.2 (2) |
H8A—C8—H8B | 107.6 | C18—C22—H22A | 109.5 |
O3—C9—O2 | 117.6 (2) | C18—C22—H22B | 109.5 |
O3—C9—C8 | 122.8 (2) | H22A—C22—H22B | 109.5 |
O2—C9—C8 | 119.23 (19) | C18—C22—H22C | 109.5 |
C6—C10—H10A | 109.5 | H22A—C22—H22C | 109.5 |
C6—C10—H10B | 109.5 | H22B—C22—H22C | 109.5 |
H10A—C10—H10B | 109.5 | C18—C23—H23A | 109.5 |
C6—C10—H10C | 109.5 | C18—C23—H23B | 109.5 |
H10A—C10—H10C | 109.5 | H23A—C23—H23B | 109.5 |
H10B—C10—H10C | 109.5 | C18—C23—H23C | 109.5 |
C12—C11—C6 | 113.94 (18) | H23A—C23—H23C | 109.5 |
C12—C11—H11A | 108.8 | H23B—C23—H23C | 109.5 |
C6—C11—H11A | 108.8 | C20—C24—H24A | 109.5 |
C12—C11—H11B | 108.8 | C20—C24—H24B | 109.5 |
C6—C11—H11B | 108.8 | H24A—C24—H24B | 109.5 |
H11A—C11—H11B | 107.7 | C20—C24—H24C | 109.5 |
C11—C12—C13 | 111.8 (2) | H24A—C24—H24C | 109.5 |
C11—C12—H12A | 109.2 | H24B—C24—H24C | 109.5 |
C13—C12—H12A | 109.2 | C26—C25—C19 | 116.9 (2) |
C11—C12—H12B | 109.2 | C26—C25—H25A | 108.1 |
C13—C12—H12B | 109.2 | C19—C25—H25A | 108.1 |
H12A—C12—H12B | 107.9 | C26—C25—H25B | 108.1 |
C12—C13—C14 | 113.05 (19) | C19—C25—H25B | 108.1 |
C12—C13—C20 | 113.1 (2) | H25A—C25—H25B | 107.3 |
C14—C13—C20 | 113.16 (18) | O6—C26—O5 | 124.2 (3) |
C12—C13—H13 | 105.5 | O6—C26—C25 | 124.1 (2) |
C14—C13—H13 | 105.5 | O5—C26—C25 | 111.6 (2) |
C20—C13—H13 | 105.5 | O5—C27—H27A | 109.5 |
O4—C14—C15 | 102.50 (17) | O5—C27—H27B | 109.5 |
O4—C14—C7 | 108.01 (18) | H27A—C27—H27B | 109.5 |
C15—C14—C7 | 113.50 (19) | O5—C27—H27C | 109.5 |
O4—C14—C13 | 110.14 (18) | H27A—C27—H27C | 109.5 |
C15—C14—C13 | 109.10 (19) | H27B—C27—H27C | 109.5 |
C7—C14—C13 | 113.05 (18) | ||
C2—O1—C1—C4 | −0.5 (3) | O4—C14—C15—C16 | 45.6 (2) |
C1—O1—C2—C3 | 0.7 (3) | C7—C14—C15—C16 | 161.85 (18) |
O1—C2—C3—C4 | −0.6 (3) | C13—C14—C15—C16 | −71.1 (2) |
O1—C1—C4—C3 | 0.1 (3) | C14—C15—C16—C21 | 77.3 (2) |
O1—C1—C4—C5 | 179.1 (2) | C14—C15—C16—C17 | −37.9 (2) |
C2—C3—C4—C1 | 0.3 (3) | C14—O4—C17—C18 | −111.5 (2) |
C2—C3—C4—C5 | −178.7 (2) | C14—O4—C17—C16 | 11.3 (2) |
C9—O2—C5—C4 | −159.5 (2) | C21—C16—C17—O4 | −93.7 (2) |
C9—O2—C5—C6 | −32.0 (3) | C15—C16—C17—O4 | 17.8 (2) |
C1—C4—C5—O2 | −146.5 (2) | C21—C16—C17—C18 | 27.6 (3) |
C3—C4—C5—O2 | 32.3 (3) | C15—C16—C17—C18 | 139.03 (19) |
C1—C4—C5—C6 | 87.6 (3) | O4—C17—C18—C22 | −59.7 (2) |
C3—C4—C5—C6 | −93.5 (3) | C16—C17—C18—C22 | −178.62 (19) |
O2—C5—C6—C10 | −73.1 (2) | O4—C17—C18—C23 | −177.11 (17) |
C4—C5—C6—C10 | 47.7 (3) | C16—C17—C18—C23 | 63.9 (2) |
O2—C5—C6—C11 | 167.36 (18) | O4—C17—C18—C19 | 58.9 (2) |
C4—C5—C6—C11 | −71.8 (2) | C16—C17—C18—C19 | −60.1 (3) |
O2—C5—C6—C7 | 48.6 (2) | C17—C18—C19—C25 | 153.7 (2) |
C4—C5—C6—C7 | 169.41 (19) | C22—C18—C19—C25 | −87.0 (2) |
C10—C6—C7—C8 | 64.1 (2) | C23—C18—C19—C25 | 34.5 (3) |
C11—C6—C7—C8 | −176.87 (18) | C17—C18—C19—C20 | 25.4 (3) |
C5—C6—C7—C8 | −57.9 (2) | C22—C18—C19—C20 | 144.74 (19) |
C10—C6—C7—C14 | −170.21 (19) | C23—C18—C19—C20 | −93.8 (2) |
C11—C6—C7—C14 | −51.2 (2) | C25—C19—C20—C21 | −91.2 (2) |
C5—C6—C7—C14 | 67.8 (2) | C18—C19—C20—C21 | 35.4 (2) |
C14—C7—C8—C9 | −77.0 (2) | C25—C19—C20—C24 | 27.7 (3) |
C6—C7—C8—C9 | 50.6 (2) | C18—C19—C20—C24 | 154.2 (2) |
C5—O2—C9—O3 | −162.9 (2) | C25—C19—C20—C13 | 150.6 (2) |
C5—O2—C9—C8 | 23.9 (3) | C18—C19—C20—C13 | −82.8 (2) |
C7—C8—C9—O3 | 153.6 (2) | C12—C13—C20—C21 | −171.48 (18) |
C7—C8—C9—O2 | −33.5 (3) | C14—C13—C20—C21 | −41.3 (3) |
C10—C6—C11—C12 | 175.0 (2) | C12—C13—C20—C24 | 69.6 (3) |
C5—C6—C11—C12 | −64.2 (3) | C14—C13—C20—C24 | −160.2 (2) |
C7—C6—C11—C12 | 54.9 (3) | C12—C13—C20—C19 | −56.2 (2) |
C6—C11—C12—C13 | −55.8 (3) | C14—C13—C20—C19 | 74.0 (3) |
C11—C12—C13—C14 | 50.3 (2) | C15—C16—C21—O7 | 111.6 (3) |
C11—C12—C13—C20 | −179.43 (18) | C17—C16—C21—O7 | −138.9 (2) |
C17—O4—C14—C15 | −36.1 (2) | C15—C16—C21—C20 | −69.5 (2) |
C17—O4—C14—C7 | −156.17 (18) | C17—C16—C21—C20 | 39.9 (3) |
C17—O4—C14—C13 | 79.9 (2) | C24—C20—C21—O7 | −14.6 (3) |
C8—C7—C14—O4 | 50.7 (2) | C19—C20—C21—O7 | 106.9 (3) |
C6—C7—C14—O4 | −73.6 (2) | C13—C20—C21—O7 | −132.7 (2) |
C8—C7—C14—C15 | −62.3 (2) | C24—C20—C21—C16 | 166.6 (2) |
C6—C7—C14—C15 | 173.51 (18) | C19—C20—C21—C16 | −71.9 (2) |
C8—C7—C14—C13 | 172.8 (2) | C13—C20—C21—C16 | 48.5 (2) |
C6—C7—C14—C13 | 48.6 (3) | C18—C19—C25—C26 | 153.9 (2) |
C12—C13—C14—O4 | 74.0 (2) | C20—C19—C25—C26 | −77.3 (3) |
C20—C13—C14—O4 | −56.2 (3) | C27—O5—C26—O6 | 0.8 (4) |
C12—C13—C14—C15 | −174.24 (18) | C27—O5—C26—C25 | −175.0 (2) |
C20—C13—C14—C15 | 55.6 (3) | C19—C25—C26—O6 | 147.3 (3) |
C12—C13—C14—C7 | −46.9 (3) | C19—C25—C26—O5 | −36.9 (3) |
C20—C13—C14—C7 | −177.13 (19) |
Experimental details
Crystal data | |
Chemical formula | C27H34O7 |
Mr | 470.54 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 100 |
a, b, c (Å) | 8.7174 (6), 11.7401 (8), 23.1106 (16) |
V (Å3) | 2365.2 (3) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.25 × 0.15 × 0.05 |
Data collection | |
Diffractometer | Bruker SMART APEX diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 22814, 3083, 2674 |
Rint | 0.053 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.038, 0.098, 1.03 |
No. of reflections | 3083 |
No. of parameters | 307 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.29, −0.20 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), X-SEED (Barbour, 2001), publCIF (Westrip, 2010).
Acknowledgements
We thank the University of Malaya (PPP PS378/009B) for supporting this study.
References
Barbour, L. J. (2001). J. Supramol. Chem. 1, 189–191. CrossRef CAS Google Scholar
Bruker (2009). APEX2 and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Kim, J.-G., Cho, D. H. & Jang, D. O. (2004). Tetrahedron Lett. 45, 3031–3033. Web of Science CrossRef CAS Google Scholar
Kokpol, U., Chavasiri, W., Tip-Pyang, S., Veerachato, G., Zhao, F., Simpson, J. & Weavers, R. T. (1996). Phytochemistry, 41, 903–905. CSD CrossRef CAS Web of Science Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Westrip, S. P. (2010). J. Appl. Cryst. 43, 920-925. Web of Science CrossRef CAS IUCr Journals Google Scholar
Wu, J., Zhang, S., Xiao, Q., Li, Q.-X., Huang, J.-S., Xiao, Z.-H. & Long, L.-J. (2003). Z. Naturforsch. Teil B, 58, 1216–1219. CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The limonoid, xyloccensin K, which was isolated from the seeds of Xylocarpus granatum, has a structure similar to those of other limonoids but it features an ether linkage connecting the C3 and C8 atoms along with a tetrahydrofuryl sub-unit (Kokpol et al., 1996). As the compound is also a tertiary alcohol, the compound can also be deoxygenated by a free-radical process (Kim et al., 2004). The synthetic compound was fully characterized by spectroscopic methods. This deoxygenated compound (Scheme I, Fig. 1) was isolated from the bark of Chisocheton ceramicus in the present study; the spectroscopic assignments are confirmed by the crystal structure determination.