organic compounds
3-Benzyl-3-hydroxy-2-phenyl-3H-indole 1-oxide
aDipartimento di Chimica Generale ed Inorganica, Chimica Analitica, Chimica Fisica, Universitá degli Studi di Parma, Viale G. P. Usberti 17/A, I-43100 Parma, Italy, bDipartimento ISAC, Universitá Politecnica delle Marche, Via Brecce Bianche, I-60131 Ancona, Italy, and cFakulteti i Shkencave të Natyrës, Departamenti i Kimise, Universiteti i Tiranes, Bulevardi "Zogu I", Tirana, Albania
*Correspondence e-mail: corrado.rizzoli@unipr.it
The 21H17NO2, contains two crystallographically independent molecules of similar geometry. The indole ring systems form dihedral angles of 8.30 (5) and 9.58 (5)° with the attached phenyl rings, and 56.96 (5) and 57.68 (5)° with the aromatic rings of the respective benzyl groups. The molecular conformations are stabilized by intramolecular C—H⋯O hydrogen bonds. In the centrosymmetrically related pairs of molecules are linked into dimers through pairs of intermolecular O—H⋯O hydrogen bonds, generating 12-membered rings with R22(12) motifs. The dimers are further linked into a three-dimensional network by C—H⋯O interactions.
of the title compound, CRelated literature
For the use of nitrones in the spin-trapping technique and in organic synthesis, see: Janzen (1971); Zubarev (1979); Balasubramanian (1985); Pisaneschi et al. (2002); Jones et al. (2000); Bernotas et al. (1999); Ali & Wazeer (1988); Merino (2005); Chiacchio et al. (2006); Revuelta et al. (2008); Astolfi et al. (2003); Greci et al. (2001); Tommasi et al. (1999); Bruni et al. (1998). For a related structure, see: Yamada et al. (2003). For graph-set notation, see: Bernstein et al. (1995). For the preparation of 2-phenylisatogen, see: Bond & Hooper (1974).
Experimental
Crystal data
|
Data collection
|
Refinement
|
Data collection: AED (Belletti et al., 1993); cell AED; data reduction: AED; program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and SCHAKAL97 (Keller, 1997); software used to prepare material for publication: SHELXL97 and PARST95 (Nardelli, 1995).
Supporting information
https://doi.org/10.1107/S1600536810026176/ez2222sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810026176/ez2222Isup2.hkl
A solution of benzylmagnesium bromide (20 mmoles in 30 ml of dried THF, obtained from 0.46 g of magnesium and 2.54 g of benzyl chloride in a current of argon) was added to a solution of 2-phenylisatogen (10 mmoles, 2.23 g in 50 ml of dried THF; Bond & Hooper, 1974), at room temperature and under magnetic stirring. After the addition, the reaction mixture was kept at room temperature for 2 h, then it was poured into 10% aqueous NH4Cl (100 ml) solution. The mixture was extracted with chloroform (2 × 50 ml) and the separated organic layer was dried on Na2SO4 and evaporated to dryness. The residue was treated with diethyl ether to give a white solid corresponding to the expected nitrone, which was separated by filtration under vacuum and washed with diethyl ether (obtained 2.04 g, yield 65%, m.p. 200–201 °C. FT—IR, ν, cm-1, 3143 (OH). 1601 (O<-N=C<), 1519. 1H NMR, δ, CDCl3: 3.36 (2H, pseudo-q, –CH2Ph, distereotopic H atoms), 6.41 (2H, d, arom.), 6.81–7.07 (5H,m, arom.). 7.13–7.55 (3H, m, arom.), 7.3–7.4 (2H. m, arom.), 8.6 (2H, pseudo-q, arom). Mass. calcd. for C21H17NO2, 315.39; found: m/z (%): 315 (M+, 5.7), 224 (34.4), 208 (58.6), 179 (100). The melting point was measured on a Mitamura Riken Kogyo mp D electrochemical apparartus and was not corrected. FT—IR spectrum was recorded in KBr with a Perkin-Elmer MGX1 spectrophotometer equipped with Spectra Tech. 1H NMR spectrum was recorded on a Gemini Varian 200 MHz. was recorded on a Carlo Erba QMD 1000 in positive electron impact (EI) mode. Single crystals of the title compound suitable for X-ray analysis were obtained by slow evaporation of an ethanol solution at room temperature.
The hydroxy H atoms were located in a difference Fourier map and refined freely. All other H atoms were placed at calculated positions and refined using a riding model approximation, with C—H = 0.93–0.97 Å, and with Uiso(H) = 1.2 Ueq(C).
Many types of cyclic and acyclic α-phenylnitrone and 5,5-dimethyl-pyrroline-N-oxide, have been used frequently in the technique since its inception (Janzen, 1971; Zubarev, 1979). are also used in the syntheses of isoxazolidines through 1,3-dipolar with a series of dipolarophiles (Balasubramanian, 1985). Although the most used in reactions are acyclic, several papers have appeared in the last two decades describing reactions with cyclic (Pisaneschi et al., 2002; Jones et al., 2000; Bernotas et al., 1999; Ali & Wazeer, 1988). Significant advances have been described in the use of derived from sugars and aminoacids for the synthesis of interesting biological compounds including aminoacids, amino and nucleoside analogs (Merino, 2005). On this basis, enantioselective syntheses of homo-carboxylic-2'-oxo-3'-azo-nucleosides were achieved by reactions of N-glycosyl with allylic nucleobases (Chiacchio et al., 2006). Moreover, a series of 3-spirocyclopropane dihydro- and tetrahydropyrid-4-ones were synthesized by nitrone to 1,1'-bicyclopropylidene (Revuelta et al., 2008). The title compound was synthesized in order to continue our studies on 1,3-dipolar with different dipolarophiles, with particular focus on the of metal cations such as cobalt(II), calcium(II), zinc(II) and nickel(II) (Astolfi et al., 2003; Greci et al., 2001; Tommasi et al., 1999; Bruni et al., 1998).
such as N-tert-butyl-The
of the title compound (Fig. 1) contains two crystallographically independent molecules with similar geometry. The indole ring systems including the N1 and N2 atoms form dihedral angles of 8.30 (5) and 9.58 (5)°, respectively, with the attached phenyl rings, and 56.96 (5) and 57.68 (5)°, respectively, with the aromatic ring of the benzyl groups. The N–O (mean value 1.304 (2) Å) and C–O (mean value 1.420 (2) Å) bond lengths are comparable with those found in 3-hydroxy-2,3-dimethyl-3H-indole N-oxide [1.3093 (17) and 1.418 (2) Å respectively; Yamada et al., 2003]. The molecular conformations are stabilized by intramolecular C—H···O hydrogen bonds (Table 1). In the crystal packing, centrosymmetrically related molecules are linked into dimers (Fig. 2) through intermolecular O—H···O hydrogen bonds resulting in twelve-membered rings with R22(12) motifs (Bernstein et al., 1995). Within the dimers, the centroid-to-centroid separations between the opposite C1–C6/C9i–C14i and C22–C27/C30ii–C35ii aromatic rings are 3.893 (2) and 3.920 (2) Å, respectively (symmetry codes: (i) 1 - x. -y, 1 - z; (ii) -x, 1 - y, 1 - z). The dimers are further connected by C—H···O hydrogen bonds into a three-dimensional network (Fig. 3).For the use of
in the technique and organic synthesis, see: Janzen (1971); Zubarev (1979); Balasubramanian (1985); Pisaneschi et al. (2002); Jones et al. (2000); Bernotas et al. (1999); Ali & Wazeer (1988); Merino (2005); Chiacchio et al. (2006); Revuelta et al. (2008); Astolfi et al. (2003); Greci et al. (2001); Tommasi et al. (1999); Bruni et al. (1998). For a related structure, see: Yamada et al. (2003). For graph-set notation, see: Bernstein et al. (1995). For the preparation of 2-phenylisatogen, see: Bond & Hooper (1974).Data collection: AED (Belletti et al., 1993); cell
AED (Belletti et al., 1993); data reduction: AED (Belletti et al., 1993); program(s) used to solve structure: SIR97 (Altomare et al., 1999); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 for Windows (Farrugia, 1997) and SCHAKAL97 (Keller, 1997); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008) and PARST95 (Nardelli, 1995).Fig. 1. The asymmetric unit of the title compound. Displacement ellipsoids are drawn at the 30% probability level. | |
Fig. 2. View of the centrosymmetric dimers of the title formed through intermolecular O—H···O hydrogen bonds (dashed lines). Symmetry codes: (i) 1 - x, -y, 1 - z; (ii) -x, 1 - y, 1 - z. | |
Fig. 3. Crystal packing of the title compound viewed approximately along the c axis. Intra- and intermolecular hydrogen bonds are shown as dashed lines. |
C21H17NO2 | Z = 4 |
Mr = 315.36 | F(000) = 664 |
Triclinic, P1 | Dx = 1.252 Mg m−3 |
Hall symbol: -P 1 | Cu Kα radiation, λ = 1.54178 Å |
a = 11.635 (2) Å | Cell parameters from 48 reflections |
b = 11.971 (2) Å | θ = 16.4–48.4° |
c = 12.063 (3) Å | µ = 0.64 mm−1 |
α = 84.773 (5)° | T = 294 K |
β = 88.882 (6)° | Block, pale yellow |
γ = 88.635 (6)° | 0.26 × 0.24 × 0.18 mm |
V = 1672.5 (6) Å3 |
Siemens AED diffractometer | Rint = 0.000 |
Radiation source: fine-focus sealed tube | θmax = 68.0°, θmin = 3.7° |
Graphite monochromator | h = −9→13 |
θ/2θ scans | k = −14→10 |
6045 measured reflections | l = −14→14 |
6045 independent reflections | 3 standard reflections every 100 reflections |
5126 reflections with I > 2σ(I) | intensity decay: 0.02% |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.053 | H atoms treated by a mixture of independent and constrained refinement |
wR(F2) = 0.162 | w = 1/[σ2(Fo2) + (0.0996P)2 + 0.2753P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max < 0.001 |
6045 reflections | Δρmax = 0.22 e Å−3 |
442 parameters | Δρmin = −0.24 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008) |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.0034 (5) |
C21H17NO2 | γ = 88.635 (6)° |
Mr = 315.36 | V = 1672.5 (6) Å3 |
Triclinic, P1 | Z = 4 |
a = 11.635 (2) Å | Cu Kα radiation |
b = 11.971 (2) Å | µ = 0.64 mm−1 |
c = 12.063 (3) Å | T = 294 K |
α = 84.773 (5)° | 0.26 × 0.24 × 0.18 mm |
β = 88.882 (6)° |
Siemens AED diffractometer | Rint = 0.000 |
6045 measured reflections | 3 standard reflections every 100 reflections |
6045 independent reflections | intensity decay: 0.02% |
5126 reflections with I > 2σ(I) |
R[F2 > 2σ(F2)] = 0.053 | 0 restraints |
wR(F2) = 0.162 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.05 | Δρmax = 0.22 e Å−3 |
6045 reflections | Δρmin = −0.24 e Å−3 |
442 parameters |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.46993 (13) | 0.19070 (10) | 0.43394 (10) | 0.0705 (4) | |
O2 | 0.54286 (11) | −0.16774 (9) | 0.33565 (11) | 0.0571 (3) | |
H2O | 0.534 (2) | −0.172 (2) | 0.410 (2) | 0.088 (7)* | |
O3 | 0.03259 (14) | 0.68855 (10) | 0.44282 (11) | 0.0754 (4) | |
O4 | −0.00423 (11) | 0.33865 (9) | 0.32592 (12) | 0.0628 (3) | |
H4O | −0.013 (2) | 0.328 (2) | 0.407 (2) | 0.097 (8)* | |
N1 | 0.52177 (13) | 0.10469 (10) | 0.39161 (11) | 0.0549 (4) | |
N2 | −0.00636 (14) | 0.60551 (10) | 0.39494 (11) | 0.0565 (4) | |
C1 | 0.64142 (16) | 0.08049 (13) | 0.40690 (13) | 0.0555 (4) | |
C2 | 0.7148 (2) | 0.14275 (16) | 0.45982 (15) | 0.0696 (5) | |
H2 | 0.6920 | 0.2085 | 0.4904 | 0.084* | |
C3 | 0.8267 (2) | 0.10075 (19) | 0.46471 (17) | 0.0784 (6) | |
H3 | 0.8815 | 0.1401 | 0.4995 | 0.094* | |
C4 | 0.86049 (19) | 0.0018 (2) | 0.41950 (17) | 0.0772 (6) | |
H4 | 0.9363 | −0.0239 | 0.4261 | 0.093* | |
C5 | 0.78426 (17) | −0.05788 (16) | 0.36581 (16) | 0.0654 (5) | |
H5 | 0.8061 | −0.1236 | 0.3348 | 0.079* | |
C6 | 0.67341 (15) | −0.01605 (13) | 0.35970 (13) | 0.0541 (4) | |
C7 | 0.57370 (14) | −0.05489 (12) | 0.30169 (13) | 0.0511 (4) | |
C8 | 0.47831 (15) | 0.02996 (12) | 0.33305 (12) | 0.0499 (4) | |
C9 | 0.36031 (15) | 0.03120 (13) | 0.30073 (13) | 0.0537 (4) | |
C10 | 0.28318 (18) | 0.12083 (16) | 0.31429 (16) | 0.0669 (5) | |
H10 | 0.3074 | 0.1834 | 0.3471 | 0.080* | |
C11 | 0.1726 (2) | 0.1165 (2) | 0.2795 (2) | 0.0818 (6) | |
H11 | 0.1214 | 0.1759 | 0.2885 | 0.098* | |
C12 | 0.1379 (2) | 0.0260 (2) | 0.23201 (19) | 0.0826 (6) | |
H12 | 0.0623 | 0.0235 | 0.2087 | 0.099* | |
C13 | 0.21224 (19) | −0.06358 (19) | 0.21721 (19) | 0.0772 (6) | |
H13 | 0.1866 | −0.1253 | 0.1839 | 0.093* | |
C14 | 0.32193 (17) | −0.06139 (15) | 0.25114 (16) | 0.0652 (5) | |
H14 | 0.3719 | −0.1217 | 0.2414 | 0.078* | |
C15 | 0.60383 (16) | −0.04876 (14) | 0.17393 (14) | 0.0588 (4) | |
H151 | 0.6698 | −0.0979 | 0.1630 | 0.071* | |
H152 | 0.5396 | −0.0773 | 0.1357 | 0.071* | |
C16 | 0.63050 (16) | 0.06764 (15) | 0.12009 (13) | 0.0592 (4) | |
C17 | 0.5463 (2) | 0.13279 (18) | 0.06942 (16) | 0.0734 (5) | |
H17 | 0.4716 | 0.1067 | 0.0693 | 0.088* | |
C18 | 0.5709 (3) | 0.2378 (2) | 0.0179 (2) | 0.0979 (8) | |
H18 | 0.5122 | 0.2798 | −0.0183 | 0.117* | |
C19 | 0.6775 (3) | 0.2818 (2) | 0.0181 (2) | 0.1036 (9) | |
H19 | 0.6915 | 0.3532 | −0.0160 | 0.124* | |
C20 | 0.7618 (3) | 0.2195 (2) | 0.0687 (2) | 0.1025 (9) | |
H20 | 0.8356 | 0.2475 | 0.0706 | 0.123* | |
C21 | 0.7385 (2) | 0.1121 (2) | 0.11877 (17) | 0.0803 (6) | |
H21 | 0.7982 | 0.0693 | 0.1523 | 0.096* | |
C22 | −0.12773 (16) | 0.58215 (13) | 0.40787 (13) | 0.0560 (4) | |
C23 | −0.2149 (2) | 0.63966 (15) | 0.46520 (15) | 0.0696 (5) | |
H23 | −0.1988 | 0.7036 | 0.5000 | 0.084* | |
C24 | −0.3243 (2) | 0.59772 (18) | 0.46771 (17) | 0.0768 (6) | |
H24 | −0.3838 | 0.6331 | 0.5045 | 0.092* | |
C25 | −0.34455 (18) | 0.5030 (2) | 0.41531 (17) | 0.0753 (6) | |
H25 | −0.4183 | 0.4744 | 0.4180 | 0.090* | |
C26 | −0.25587 (17) | 0.44760 (17) | 0.35706 (16) | 0.0674 (5) | |
H26 | −0.2717 | 0.3839 | 0.3219 | 0.081* | |
C27 | −0.14607 (15) | 0.48919 (14) | 0.35319 (13) | 0.0555 (4) | |
C28 | −0.03287 (15) | 0.45255 (13) | 0.29552 (14) | 0.0534 (4) | |
C29 | 0.05241 (15) | 0.53448 (12) | 0.33312 (13) | 0.0520 (4) | |
C30 | 0.17631 (16) | 0.53540 (13) | 0.30252 (13) | 0.0552 (4) | |
C31 | 0.22917 (17) | 0.44455 (16) | 0.25119 (16) | 0.0667 (5) | |
H31 | 0.1845 | 0.3840 | 0.2378 | 0.080* | |
C32 | 0.34565 (19) | 0.4425 (2) | 0.22003 (19) | 0.0775 (6) | |
H32 | 0.3769 | 0.3814 | 0.1865 | 0.093* | |
C33 | 0.41384 (19) | 0.5308 (2) | 0.23898 (19) | 0.0807 (6) | |
H33 | 0.4914 | 0.5306 | 0.2188 | 0.097* | |
C34 | 0.3640 (2) | 0.62003 (19) | 0.28893 (19) | 0.0802 (6) | |
H34 | 0.4097 | 0.6801 | 0.3017 | 0.096* | |
C35 | 0.24684 (18) | 0.62393 (15) | 0.32136 (16) | 0.0667 (5) | |
H35 | 0.2169 | 0.6853 | 0.3552 | 0.080* | |
C36 | −0.03763 (17) | 0.46461 (16) | 0.16720 (15) | 0.0658 (5) | |
H361 | 0.0389 | 0.4511 | 0.1372 | 0.079* | |
H362 | −0.0872 | 0.4075 | 0.1436 | 0.079* | |
C37 | −0.08058 (18) | 0.5768 (2) | 0.11951 (14) | 0.0698 (5) | |
C38 | −0.1895 (2) | 0.5879 (3) | 0.0830 (2) | 0.1048 (9) | |
H38 | −0.2381 | 0.5270 | 0.0890 | 0.126* | |
C39 | −0.2281 (3) | 0.6934 (4) | 0.0360 (3) | 0.1300 (13) | |
H39 | −0.3022 | 0.7011 | 0.0083 | 0.156* | |
C40 | −0.1597 (4) | 0.7850 (3) | 0.0297 (2) | 0.1215 (12) | |
H40 | −0.1878 | 0.8545 | 0.0001 | 0.146* | |
C41 | −0.0534 (3) | 0.7740 (3) | 0.0660 (2) | 0.1153 (10) | |
H41 | −0.0058 | 0.8356 | 0.0616 | 0.138* | |
C42 | −0.0136 (2) | 0.6711 (2) | 0.11025 (19) | 0.0886 (7) | |
H42 | 0.0616 | 0.6644 | 0.1351 | 0.106* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.1094 (11) | 0.0420 (6) | 0.0622 (7) | 0.0093 (6) | −0.0094 (7) | −0.0169 (5) |
O2 | 0.0737 (8) | 0.0372 (5) | 0.0614 (7) | −0.0032 (5) | −0.0124 (6) | −0.0074 (5) |
O3 | 0.1173 (11) | 0.0449 (6) | 0.0674 (8) | −0.0154 (7) | −0.0035 (7) | −0.0198 (6) |
O4 | 0.0762 (8) | 0.0421 (6) | 0.0721 (8) | −0.0051 (5) | 0.0043 (6) | −0.0153 (5) |
N1 | 0.0815 (10) | 0.0375 (6) | 0.0462 (7) | −0.0018 (6) | −0.0049 (6) | −0.0057 (5) |
N2 | 0.0861 (10) | 0.0369 (6) | 0.0472 (7) | −0.0038 (6) | −0.0050 (7) | −0.0061 (5) |
C1 | 0.0762 (11) | 0.0465 (8) | 0.0440 (8) | −0.0124 (8) | −0.0081 (7) | −0.0009 (6) |
C2 | 0.0989 (15) | 0.0541 (10) | 0.0573 (10) | −0.0246 (10) | −0.0130 (10) | −0.0049 (8) |
C3 | 0.0884 (15) | 0.0805 (14) | 0.0672 (12) | −0.0354 (12) | −0.0210 (10) | 0.0015 (10) |
C4 | 0.0696 (12) | 0.0928 (15) | 0.0682 (12) | −0.0163 (11) | −0.0189 (9) | 0.0065 (11) |
C5 | 0.0699 (11) | 0.0632 (10) | 0.0631 (10) | −0.0044 (9) | −0.0128 (9) | −0.0018 (8) |
C6 | 0.0659 (10) | 0.0487 (8) | 0.0481 (8) | −0.0080 (7) | −0.0076 (7) | −0.0033 (6) |
C7 | 0.0633 (10) | 0.0385 (7) | 0.0526 (9) | −0.0030 (7) | −0.0087 (7) | −0.0076 (6) |
C8 | 0.0681 (10) | 0.0379 (7) | 0.0439 (8) | −0.0024 (7) | −0.0035 (7) | −0.0044 (6) |
C9 | 0.0639 (10) | 0.0481 (8) | 0.0477 (8) | 0.0011 (7) | −0.0040 (7) | 0.0022 (6) |
C10 | 0.0798 (13) | 0.0537 (10) | 0.0663 (11) | 0.0101 (9) | −0.0030 (9) | −0.0034 (8) |
C11 | 0.0777 (14) | 0.0766 (14) | 0.0881 (15) | 0.0244 (11) | −0.0061 (11) | 0.0034 (11) |
C12 | 0.0699 (13) | 0.0929 (16) | 0.0826 (14) | 0.0056 (11) | −0.0164 (11) | 0.0074 (12) |
C13 | 0.0748 (13) | 0.0748 (13) | 0.0827 (14) | −0.0044 (10) | −0.0230 (11) | −0.0054 (10) |
C14 | 0.0683 (11) | 0.0548 (10) | 0.0729 (11) | 0.0040 (8) | −0.0137 (9) | −0.0072 (8) |
C15 | 0.0707 (11) | 0.0566 (9) | 0.0514 (9) | −0.0022 (8) | −0.0059 (8) | −0.0162 (7) |
C16 | 0.0731 (11) | 0.0647 (10) | 0.0410 (8) | −0.0062 (8) | −0.0036 (7) | −0.0099 (7) |
C17 | 0.0818 (13) | 0.0790 (13) | 0.0582 (10) | −0.0040 (10) | −0.0081 (9) | 0.0018 (9) |
C18 | 0.120 (2) | 0.0863 (16) | 0.0831 (16) | 0.0026 (15) | −0.0070 (14) | 0.0172 (13) |
C19 | 0.150 (3) | 0.0783 (15) | 0.0802 (16) | −0.0247 (17) | −0.0084 (16) | 0.0105 (12) |
C20 | 0.117 (2) | 0.112 (2) | 0.0792 (15) | −0.0545 (17) | −0.0068 (14) | 0.0015 (14) |
C21 | 0.0802 (14) | 0.0930 (15) | 0.0670 (12) | −0.0187 (12) | −0.0094 (10) | 0.0032 (11) |
C22 | 0.0791 (11) | 0.0433 (8) | 0.0445 (8) | 0.0054 (7) | −0.0003 (7) | 0.0000 (6) |
C23 | 0.1010 (16) | 0.0503 (9) | 0.0556 (10) | 0.0192 (10) | 0.0048 (10) | −0.0009 (7) |
C24 | 0.0853 (14) | 0.0756 (13) | 0.0647 (11) | 0.0298 (11) | 0.0087 (10) | 0.0088 (10) |
C25 | 0.0662 (12) | 0.0928 (15) | 0.0640 (11) | 0.0098 (10) | −0.0006 (9) | 0.0066 (10) |
C26 | 0.0694 (11) | 0.0719 (12) | 0.0611 (10) | −0.0019 (9) | −0.0027 (9) | −0.0058 (9) |
C27 | 0.0680 (10) | 0.0522 (9) | 0.0464 (8) | 0.0010 (7) | −0.0018 (7) | −0.0057 (7) |
C28 | 0.0637 (10) | 0.0451 (8) | 0.0529 (9) | −0.0041 (7) | −0.0012 (7) | −0.0121 (7) |
C29 | 0.0722 (10) | 0.0395 (7) | 0.0446 (8) | −0.0036 (7) | −0.0050 (7) | −0.0048 (6) |
C30 | 0.0697 (11) | 0.0474 (8) | 0.0483 (8) | −0.0096 (7) | −0.0100 (7) | 0.0013 (7) |
C31 | 0.0690 (11) | 0.0613 (10) | 0.0711 (11) | −0.0095 (9) | −0.0002 (9) | −0.0101 (9) |
C32 | 0.0707 (12) | 0.0822 (14) | 0.0799 (13) | −0.0007 (10) | −0.0004 (10) | −0.0089 (11) |
C33 | 0.0653 (12) | 0.0951 (16) | 0.0788 (13) | −0.0150 (11) | −0.0116 (10) | 0.0137 (12) |
C34 | 0.0828 (14) | 0.0735 (13) | 0.0830 (14) | −0.0281 (11) | −0.0235 (11) | 0.0119 (11) |
C35 | 0.0826 (13) | 0.0528 (9) | 0.0647 (11) | −0.0149 (9) | −0.0196 (9) | 0.0027 (8) |
C36 | 0.0715 (11) | 0.0758 (12) | 0.0534 (10) | −0.0076 (9) | −0.0023 (8) | −0.0229 (9) |
C37 | 0.0718 (12) | 0.0986 (15) | 0.0402 (8) | 0.0051 (10) | −0.0028 (8) | −0.0143 (9) |
C38 | 0.0843 (16) | 0.148 (3) | 0.0839 (16) | 0.0134 (16) | −0.0179 (13) | −0.0224 (16) |
C39 | 0.101 (2) | 0.193 (4) | 0.095 (2) | 0.056 (3) | −0.0255 (17) | −0.017 (2) |
C40 | 0.139 (3) | 0.143 (3) | 0.0747 (16) | 0.051 (2) | 0.0073 (18) | 0.0141 (18) |
C41 | 0.138 (3) | 0.109 (2) | 0.0904 (18) | 0.0069 (19) | −0.0045 (17) | 0.0307 (16) |
C42 | 0.0984 (17) | 0.0911 (16) | 0.0722 (13) | −0.0070 (13) | −0.0114 (12) | 0.0182 (11) |
O1—N1 | 1.3186 (18) | C19—C20 | 1.341 (4) |
O2—C7 | 1.4276 (18) | C19—H19 | 0.9300 |
O2—H2O | 0.90 (3) | C20—C21 | 1.400 (3) |
O3—N2 | 1.2898 (17) | C20—H20 | 0.9300 |
O4—C28 | 1.413 (2) | C21—H21 | 0.9300 |
O4—H4O | 0.98 (3) | C22—C27 | 1.367 (2) |
N1—C8 | 1.306 (2) | C22—C23 | 1.417 (3) |
N1—C1 | 1.427 (2) | C23—C24 | 1.378 (3) |
N2—C29 | 1.347 (2) | C23—H23 | 0.9300 |
N2—C22 | 1.449 (2) | C24—C25 | 1.375 (3) |
C1—C2 | 1.353 (2) | C24—H24 | 0.9300 |
C1—C6 | 1.375 (2) | C25—C26 | 1.422 (3) |
C2—C3 | 1.385 (3) | C25—H25 | 0.9300 |
C2—H2 | 0.9300 | C26—C27 | 1.381 (3) |
C3—C4 | 1.394 (3) | C26—H26 | 0.9300 |
C3—H3 | 0.9300 | C27—C28 | 1.550 (2) |
C4—C5 | 1.361 (3) | C28—C29 | 1.516 (2) |
C4—H4 | 0.9300 | C28—C36 | 1.543 (2) |
C5—C6 | 1.373 (3) | C29—C30 | 1.481 (3) |
C5—H5 | 0.9300 | C30—C35 | 1.393 (2) |
C6—C7 | 1.473 (2) | C30—C31 | 1.421 (3) |
C7—C8 | 1.551 (2) | C31—C32 | 1.400 (3) |
C7—C15 | 1.569 (2) | C31—H31 | 0.9300 |
C8—C9 | 1.434 (2) | C32—C33 | 1.375 (3) |
C9—C14 | 1.393 (2) | C32—H32 | 0.9300 |
C9—C10 | 1.401 (2) | C33—C34 | 1.383 (3) |
C10—C11 | 1.365 (3) | C33—H33 | 0.9300 |
C10—H10 | 0.9300 | C34—C35 | 1.412 (3) |
C11—C12 | 1.344 (3) | C34—H34 | 0.9300 |
C11—H11 | 0.9300 | C35—H35 | 0.9300 |
C12—C13 | 1.384 (3) | C36—C37 | 1.491 (3) |
C12—H12 | 0.9300 | C36—H361 | 0.9700 |
C13—C14 | 1.349 (3) | C36—H362 | 0.9700 |
C13—H13 | 0.9300 | C37—C38 | 1.350 (3) |
C14—H14 | 0.9300 | C37—C42 | 1.382 (3) |
C15—C16 | 1.519 (2) | C38—C39 | 1.403 (5) |
C15—H151 | 0.9700 | C38—H38 | 0.9300 |
C15—H152 | 0.9700 | C39—C40 | 1.366 (5) |
C16—C17 | 1.357 (3) | C39—H39 | 0.9300 |
C16—C21 | 1.375 (3) | C40—C41 | 1.319 (5) |
C17—C18 | 1.384 (3) | C40—H40 | 0.9300 |
C17—H17 | 0.9300 | C41—C42 | 1.371 (4) |
C18—C19 | 1.359 (4) | C41—H41 | 0.9300 |
C18—H18 | 0.9300 | C42—H42 | 0.9300 |
C7—O2—H2O | 106.0 (15) | C21—C20—H20 | 120.1 |
C28—O4—H4O | 106.1 (14) | C16—C21—C20 | 122.4 (2) |
C8—N1—O1 | 128.88 (16) | C16—C21—H21 | 118.8 |
C8—N1—C1 | 109.39 (14) | C20—C21—H21 | 118.8 |
O1—N1—C1 | 121.73 (14) | C27—C22—C23 | 124.02 (19) |
O3—N2—C29 | 128.03 (17) | C27—C22—N2 | 106.63 (15) |
O3—N2—C22 | 118.08 (14) | C23—C22—N2 | 129.34 (16) |
C29—N2—C22 | 113.89 (13) | C24—C23—C22 | 117.77 (19) |
C2—C1—C6 | 123.80 (19) | C24—C23—H23 | 121.1 |
C2—C1—N1 | 125.66 (18) | C22—C23—H23 | 121.1 |
C6—C1—N1 | 110.54 (14) | C25—C24—C23 | 119.37 (19) |
C1—C2—C3 | 114.6 (2) | C25—C24—H24 | 120.3 |
C1—C2—H2 | 122.7 | C23—C24—H24 | 120.3 |
C3—C2—H2 | 122.7 | C24—C25—C26 | 121.8 (2) |
C2—C3—C4 | 122.57 (18) | C24—C25—H25 | 119.1 |
C2—C3—H3 | 118.7 | C26—C25—H25 | 119.1 |
C4—C3—H3 | 118.7 | C27—C26—C25 | 119.44 (19) |
C5—C4—C3 | 121.1 (2) | C27—C26—H26 | 120.3 |
C5—C4—H4 | 119.5 | C25—C26—H26 | 120.3 |
C3—C4—H4 | 119.5 | C22—C27—C26 | 117.58 (17) |
C4—C5—C6 | 116.65 (19) | C22—C27—C28 | 109.74 (15) |
C4—C5—H5 | 121.7 | C26—C27—C28 | 132.67 (16) |
C6—C5—H5 | 121.7 | O4—C28—C29 | 114.21 (14) |
C5—C6—C1 | 121.32 (16) | O4—C28—C36 | 105.78 (13) |
C5—C6—C7 | 130.23 (16) | C29—C28—C36 | 109.38 (14) |
C1—C6—C7 | 108.35 (15) | O4—C28—C27 | 111.76 (14) |
O2—C7—C6 | 114.25 (13) | C29—C28—C27 | 102.27 (13) |
O2—C7—C8 | 111.51 (13) | C36—C28—C27 | 113.64 (15) |
C6—C7—C8 | 101.63 (12) | N2—C29—C30 | 127.86 (15) |
O2—C7—C15 | 107.19 (12) | N2—C29—C28 | 107.32 (15) |
C6—C7—C15 | 108.21 (14) | C30—C29—C28 | 124.79 (14) |
C8—C7—C15 | 114.13 (13) | C35—C30—C31 | 116.51 (18) |
N1—C8—C9 | 123.70 (15) | C35—C30—C29 | 122.62 (17) |
N1—C8—C7 | 109.85 (14) | C31—C30—C29 | 120.87 (15) |
C9—C8—C7 | 126.41 (13) | C32—C31—C30 | 122.72 (18) |
C14—C9—C10 | 118.79 (17) | C32—C31—H31 | 118.6 |
C14—C9—C8 | 117.56 (15) | C30—C31—H31 | 118.6 |
C10—C9—C8 | 123.64 (16) | C33—C32—C31 | 119.9 (2) |
C11—C10—C9 | 120.11 (19) | C33—C32—H32 | 120.0 |
C11—C10—H10 | 119.9 | C31—C32—H32 | 120.0 |
C9—C10—H10 | 119.9 | C32—C33—C34 | 118.2 (2) |
C12—C11—C10 | 119.8 (2) | C32—C33—H33 | 120.9 |
C12—C11—H11 | 120.1 | C34—C33—H33 | 120.9 |
C10—C11—H11 | 120.1 | C33—C34—C35 | 122.91 (19) |
C11—C12—C13 | 121.3 (2) | C33—C34—H34 | 118.5 |
C11—C12—H12 | 119.3 | C35—C34—H34 | 118.5 |
C13—C12—H12 | 119.3 | C30—C35—C34 | 119.7 (2) |
C14—C13—C12 | 120.0 (2) | C30—C35—H35 | 120.1 |
C14—C13—H13 | 120.0 | C34—C35—H35 | 120.1 |
C12—C13—H13 | 120.0 | C37—C36—C28 | 113.77 (14) |
C13—C14—C9 | 119.97 (19) | C37—C36—H361 | 108.8 |
C13—C14—H14 | 120.0 | C28—C36—H361 | 108.8 |
C9—C14—H14 | 120.0 | C37—C36—H362 | 108.8 |
C16—C15—C7 | 115.08 (13) | C28—C36—H362 | 108.8 |
C16—C15—H151 | 108.5 | H361—C36—H362 | 107.7 |
C7—C15—H151 | 108.5 | C38—C37—C42 | 117.8 (3) |
C16—C15—H152 | 108.5 | C38—C37—C36 | 119.2 (2) |
C7—C15—H152 | 108.5 | C42—C37—C36 | 122.99 (19) |
H151—C15—H152 | 107.5 | C37—C38—C39 | 118.7 (3) |
C17—C16—C21 | 116.76 (19) | C37—C38—H38 | 120.7 |
C17—C16—C15 | 120.24 (18) | C39—C38—H38 | 120.7 |
C21—C16—C15 | 123.00 (18) | C40—C39—C38 | 121.7 (3) |
C16—C17—C18 | 120.4 (2) | C40—C39—H39 | 119.1 |
C16—C17—H17 | 119.8 | C38—C39—H39 | 119.1 |
C18—C17—H17 | 119.8 | C41—C40—C39 | 119.5 (3) |
C19—C18—C17 | 122.5 (3) | C41—C40—H40 | 120.2 |
C19—C18—H18 | 118.7 | C39—C40—H40 | 120.2 |
C17—C18—H18 | 118.7 | C40—C41—C42 | 119.5 (3) |
C20—C19—C18 | 118.1 (2) | C40—C41—H41 | 120.3 |
C20—C19—H19 | 120.9 | C42—C41—H41 | 120.3 |
C18—C19—H19 | 120.9 | C41—C42—C37 | 122.8 (3) |
C19—C20—C21 | 119.8 (3) | C41—C42—H42 | 118.6 |
C19—C20—H20 | 120.1 | C37—C42—H42 | 118.6 |
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10···O1 | 0.93 | 2.19 | 2.817 (3) | 124 |
C14—H14···O2 | 0.93 | 2.34 | 2.996 (2) | 127 |
C31—H31···O4 | 0.93 | 2.47 | 3.107 (2) | 126 |
C35—H35···O3 | 0.93 | 2.37 | 2.989 (3) | 124 |
C11—H11···O4 | 0.93 | 2.48 | 3.404 (3) | 175 |
O2—H2O···O1i | 0.90 (2) | 1.88 (2) | 2.769 (2) | 174 (2) |
O4—H4O···O3ii | 0.98 (2) | 1.82 (2) | 2.793 (2) | 178 (2) |
C24—H24···O1ii | 0.93 | 2.48 | 3.310 (3) | 148 |
C3—H3···O3iii | 0.93 | 2.46 | 3.327 (3) | 154 |
C34—H34···O2iv | 0.93 | 2.49 | 3.415 (3) | 176 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x, −y+1, −z+1; (iii) −x+1, −y+1, −z+1; (iv) x, y+1, z. |
Experimental details
Crystal data | |
Chemical formula | C21H17NO2 |
Mr | 315.36 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 294 |
a, b, c (Å) | 11.635 (2), 11.971 (2), 12.063 (3) |
α, β, γ (°) | 84.773 (5), 88.882 (6), 88.635 (6) |
V (Å3) | 1672.5 (6) |
Z | 4 |
Radiation type | Cu Kα |
µ (mm−1) | 0.64 |
Crystal size (mm) | 0.26 × 0.24 × 0.18 |
Data collection | |
Diffractometer | Siemens AED |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 6045, 6045, 5126 |
Rint | 0.000 |
(sin θ/λ)max (Å−1) | 0.601 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.053, 0.162, 1.05 |
No. of reflections | 6045 |
No. of parameters | 442 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.22, −0.24 |
Computer programs: AED (Belletti et al., 1993), SIR97 (Altomare et al., 1999), ORTEP-3 for Windows (Farrugia, 1997) and SCHAKAL97 (Keller, 1997), SHELXL97 (Sheldrick, 2008) and PARST95 (Nardelli, 1995).
D—H···A | D—H | H···A | D···A | D—H···A |
C10—H10···O1 | 0.93 | 2.19 | 2.817 (3) | 124 |
C14—H14···O2 | 0.93 | 2.34 | 2.996 (2) | 127 |
C31—H31···O4 | 0.93 | 2.47 | 3.107 (2) | 126 |
C35—H35···O3 | 0.93 | 2.37 | 2.989 (3) | 124 |
C11—H11···O4 | 0.93 | 2.48 | 3.404 (3) | 175 |
O2—H2O···O1i | 0.90 (2) | 1.88 (2) | 2.769 (2) | 174 (2) |
O4—H4O···O3ii | 0.98 (2) | 1.82 (2) | 2.793 (2) | 178 (2) |
C24—H24···O1ii | 0.93 | 2.48 | 3.310 (3) | 148 |
C3—H3···O3iii | 0.93 | 2.46 | 3.327 (3) | 154 |
C34—H34···O2iv | 0.93 | 2.49 | 3.415 (3) | 176 |
Symmetry codes: (i) −x+1, −y, −z+1; (ii) −x, −y+1, −z+1; (iii) −x+1, −y+1, −z+1; (iv) x, y+1, z. |
Acknowledgements
Financial support from the Universitá Politecnica delle Marche and the Universitá degli Studi di Parma is gratefully acknowledged.
References
Ali, S. A. & Wazeer, M. I. M. (1988). J. Chem. Soc. Perkin Trans. 1, pp. 597–605. CrossRef Web of Science Google Scholar
Altomare, A., Burla, M. C., Camalli, M., Cascarano, G. L., Giacovazzo, C., Guagliardi, A., Moliterni, A. G. G., Polidori, G. & Spagna, R. (1999). J. Appl. Cryst. 32, 115–119. Web of Science CrossRef CAS IUCr Journals Google Scholar
Astolfi, P., Bruni, P., Greci, L., Stipa, P., Righi, L. & Rizzoli, C. (2003). Eur. J. Org. Chem. pp. 2626–2634. Web of Science CSD CrossRef Google Scholar
Balasubramanian, N. (1985). Org. Prep. Proced. Int. 17, 23–47. CrossRef CAS Google Scholar
Belletti, D., Cantoni, A. & Pasquinelli, G. (1993). AED. Internal Report 1/93. Centro di Studio per la Strutturistica Diffrattometrica del CNR, Parma, Italy. Google Scholar
Bernotas, R. C., Sabol, J. S., Sing, L. & Friedrich, D. (1999). Synlett, 5, 653–655. CrossRef Google Scholar
Bernstein, J., Davis, R. E., Shimoni, L. & Chang, N.-L. (1995). Angew. Chem. Int. Ed. Engl. 34, 1555–1573. CrossRef CAS Web of Science Google Scholar
Bond, C. C. & Hooper, M. (1974). Synthesis, p. 443. CrossRef Google Scholar
Bruni, P., Giorgini, E., Tommasi, G. & Greci, L. (1998). Tetrahedron, 54, 5305–5314. Web of Science CrossRef CAS Google Scholar
Chiacchio, U., Saita, M. G., Crispino, L., Gumina, G., Mangiafico, S., Pistara, V., Romeo, G., Piperno, A. & De Clercq, E. (2006). Tetrahedron, 62, 1171–1181. Web of Science CrossRef CAS Google Scholar
Farrugia, L. J. (1997). J. Appl. Cryst. 30, 565. CrossRef IUCr Journals Google Scholar
Greci, L., Tommasi, G., Bruni, P., Sgarabotto, P. & Righi, L. (2001). Eur. J. Org. Chem. pp. 3147–3153. CrossRef Google Scholar
Janzen, E. G. (1971). Acc. Chem. Res. 4, 31–40. CrossRef CAS Web of Science Google Scholar
Jones, R. C. F., Martin, J. N. & Smith, P. (2000). Synlett, 7, 967–970. Google Scholar
Keller, E. (1997). SCHAKAL97. University of Freiburg, Germany. Google Scholar
Merino, P. (2005). Compt. Rend. Chim. 8, 775–788. Web of Science CrossRef CAS Google Scholar
Nardelli, M. (1995). J. Appl. Cryst. 28, 659. CrossRef IUCr Journals Google Scholar
Pisaneschi, F., Della Monica, C., Cordero, F. M. & Brandi, A. (2002). Tetrahedron Lett. 43, 5711–5714. Web of Science CrossRef CAS Google Scholar
Revuelta, J., Cicchi, S., de Maijere, A. & Brandi, A. (2008). Eur. J. Org. Chem. pp. 1085–1091. CrossRef Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
Tommasi, G., Bruni, P., Greci, L., Sgarabotto, P. & Righi, L. (1999). J. Chem. Soc. Perkin Trans. 1, pp. 681–686. Web of Science CSD CrossRef Google Scholar
Yamada, F., Kawanishi, A., Tomita, A. & Somei, M. (2003). Arkivoc, viii, 102–111. CrossRef Google Scholar
Zubarev, V. E. (1979). Russ. Chem. Rev. 48, 1361–1392. CrossRef CAS Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Many types of cyclic and acyclic nitrones, such as N-tert-butyl-α-phenylnitrone and 5,5-dimethyl-pyrroline-N-oxide, have been used frequently in the spin trapping technique since its inception (Janzen, 1971; Zubarev, 1979). Nitrones are also used in the syntheses of isoxazolidines through 1,3-dipolar cycloaddition with a series of dipolarophiles (Balasubramanian, 1985). Although the most used nitrones in cyclization reactions are acyclic, several papers have appeared in the last two decades describing cycloaddition reactions with cyclic nitrones (Pisaneschi et al., 2002; Jones et al., 2000; Bernotas et al., 1999; Ali & Wazeer, 1988). Significant advances have been described in the use of nitrones derived from sugars and aminoacids for the synthesis of interesting biological compounds including aminoacids, amino alcohols and nucleoside analogs (Merino, 2005). On this basis, enantioselective syntheses of homo-carboxylic-2'-oxo-3'-azo-nucleosides were achieved by cycloaddition reactions of N-glycosyl nitrones with allylic nucleobases (Chiacchio et al., 2006). Moreover, a series of 3-spirocyclopropane dihydro- and tetrahydropyrid-4-ones were synthesized by nitrone cycloaddition to 1,1'-bicyclopropylidene (Revuelta et al., 2008). The title compound was synthesized in order to continue our studies on 1,3-dipolar cycloaddition with different dipolarophiles, with particular focus on the catalytic activity of metal cations such as cobalt(II), calcium(II), zinc(II) and nickel(II) (Astolfi et al., 2003; Greci et al., 2001; Tommasi et al., 1999; Bruni et al., 1998).
The asymmetric unit of the title compound (Fig. 1) contains two crystallographically independent molecules with similar geometry. The indole ring systems including the N1 and N2 atoms form dihedral angles of 8.30 (5) and 9.58 (5)°, respectively, with the attached phenyl rings, and 56.96 (5) and 57.68 (5)°, respectively, with the aromatic ring of the benzyl groups. The N–O (mean value 1.304 (2) Å) and C–O (mean value 1.420 (2) Å) bond lengths are comparable with those found in 3-hydroxy-2,3-dimethyl-3H-indole N-oxide [1.3093 (17) and 1.418 (2) Å respectively; Yamada et al., 2003]. The molecular conformations are stabilized by intramolecular C—H···O hydrogen bonds (Table 1). In the crystal packing, centrosymmetrically related molecules are linked into dimers (Fig. 2) through intermolecular O—H···O hydrogen bonds resulting in twelve-membered rings with R22(12) motifs (Bernstein et al., 1995). Within the dimers, the centroid-to-centroid separations between the opposite C1–C6/C9i–C14i and C22–C27/C30ii–C35ii aromatic rings are 3.893 (2) and 3.920 (2) Å, respectively (symmetry codes: (i) 1 - x. -y, 1 - z; (ii) -x, 1 - y, 1 - z). The dimers are further connected by C—H···O hydrogen bonds into a three-dimensional network (Fig. 3).