organic compounds
Xyloccensin L
aEnvironment and Plant Protection Institute, Chinese Academy of Tropical Agricultural Science, Danzhou 571737, People's Republic of China, bKey Laboratory of Marine Bio-resources Sustainable Utilization, South China Sea Institute of Oceanology, Chinese Academy of Sciences, 164 West Xingang Road, Guangzhou 510301, People's Republic of China, and cGovernment Degree College at Amadala Valasa, Srikakulam District, Andhra Pradesh, 532185, India
*Correspondence e-mail: feng8513@sina.com, wwujun2003@yahoo.com
The title compound, C32H40O10, also known as xyloccensin L [systematic name: (1R,4aR,4bS,5aR,6aR,9R,10S,10aS,10bR,2aR,13R)-1-(furan-3-yl)-6a-hydroxy-10-(2-methoxy-2-oxoethyl)-9,10a,12a-trimethyl-3-oxododecahydro-1H,3H,5aH-6,9-methanoisochromeno[6,5-f]oxireno[g]chromen-13-yl (2E)-2-methylbut-2-enoate], is a limonoid with a C1—C29 oxygen bridge: this is the first report of the X-ray of such a limonoid. Two fused pyran rings and two cyclohexane rings adopt boat conformations, while another cyclohexane ring and the d-lactone ring are in half-chair conformations. The molecular structure is stabilized by intramolecular O—H⋯O hydrogen bonding.
Related literature
The title compound was isolated from seeds of an Indian mangrove, Xylocarpus moluccensis, collected in the mangrove wetlands of the Godavari estuary, Andhra Pradesh. For previous investigations of the seeds of Xylocarpus granatum and X. moluccensis, see: Kubo et al. (1976); Ng et al. (1979); Alvi et al. (1991); Kokpol et al. (1996); Mulholland et al. (2000). For our group's work in this field, see: Wu et al. (2004a,b, 2005, 2008a,b).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 2004); cell SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 .
Supporting information
https://doi.org/10.1107/S1600536810028527/ez2224sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810028527/ez2224Isup2.hkl
Dried seeds (8.7 kg) of X. moluccensis were extracted three times with 95% EtOH at room temperature. The extract was concentrated under reduced pressure, followed by suspension in H2O and extraction with EtOAc. The resulting EtOAc extract (198.0 g) was chromatographed on silica gel eluted using a CHCl3-MeOH system (100:0 - 5:1) to yield 127 fractions. Fractions 47 to 62 (66.2 g) were combined and further separated using RP C18 CC (MeCN-H2O, 50:50 - 100:0) to afford 132 subfractions. Then subfractions 13 to 15 were combined and subjected to preparative HPLC [YMC-Pack ODS-5-A, 250×20 mm i.d. (MeOH-H2O, 57 : 43), and 250×10 mm i.d. (MeCN-H2O 43 : 57)] to yield the title compound I (15.0 mg).
All non-hydrogen atoms were refined anisotropically. All the H atoms were placed in geometrically idealized positions (C—H = 0.98 Å, with Uiso(H) = 1.5Ueq(C) for methyl groups; C—H = 0.99 Å, with Uiso(H) = 1.2Ueq(C) for methylene groups; C—H = 0.95 Å, with Uiso(H) = 1.2Ueq(C) for aromatic rings; C-H = 0.95 Å, with Uiso(H) = 1.2Ueq for alkyne group, O—H = 0.84 Å, with Uiso(H) = 1.5Ueq(O) for hydroxyl group) and constrained to ride on their parent atoms. In the absence of significant
effects 2707 Friedel pairs have been merged.?
# Following replaced by publCIF - Fri June 27 10:31:02 2010
The stucture of the title compound, (I), is shown below. Dimensions are available in the archived CIF.
For related literature, see [type here to add references to related literature].
Data collection: SMART (Bruker, 2004); cell
SAINT-Plus (Bruker, 2004); data reduction: SAINT-Plus (Bruker, 2004); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).C32H40O10 | F(000) = 1248 |
Mr = 584.64 | Dx = 1.349 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 7947 reflections |
a = 8.3859 (4) Å | θ = 2.3–27.0° |
b = 11.0454 (5) Å | µ = 0.10 mm−1 |
c = 31.0799 (13) Å | T = 110 K |
V = 2878.8 (2) Å3 | Block, colorless |
Z = 4 | 0.46 × 0.44 × 0.25 mm |
Bruker SMART 1000 CCD diffractometer | 3569 independent reflections |
Radiation source: fine-focus sealed tube | 3202 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.026 |
ω scans | θmax = 27.0°, θmin = 2.0° |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | h = −10→8 |
Tmin = 0.956, Tmax = 0.976 | k = −11→14 |
14701 measured reflections | l = −39→29 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.036 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0574P)2 + 0.880P] where P = (Fo2 + 2Fc2)/3 |
3569 reflections | (Δ/σ)max = 0.002 |
386 parameters | Δρmax = 0.59 e Å−3 |
0 restraints | Δρmin = −0.20 e Å−3 |
C32H40O10 | V = 2878.8 (2) Å3 |
Mr = 584.64 | Z = 4 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 8.3859 (4) Å | µ = 0.10 mm−1 |
b = 11.0454 (5) Å | T = 110 K |
c = 31.0799 (13) Å | 0.46 × 0.44 × 0.25 mm |
Bruker SMART 1000 CCD diffractometer | 3569 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2004) | 3202 reflections with I > 2σ(I) |
Tmin = 0.956, Tmax = 0.976 | Rint = 0.026 |
14701 measured reflections |
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.096 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.59 e Å−3 |
3569 reflections | Δρmin = −0.20 e Å−3 |
386 parameters |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
C1 | 0.5981 (3) | 0.5741 (2) | 0.22231 (7) | 0.0195 (4) | |
C2 | 0.7232 (3) | 0.6275 (2) | 0.19155 (7) | 0.0182 (4) | |
H2 | 0.7917 | 0.6848 | 0.2082 | 0.022* | |
C3 | 0.6325 (3) | 0.7006 (2) | 0.15695 (7) | 0.0189 (5) | |
H3 | 0.6422 | 0.7889 | 0.1635 | 0.023* | |
C4 | 0.4563 (3) | 0.6652 (2) | 0.15701 (7) | 0.0179 (4) | |
C5 | 0.4478 (3) | 0.5242 (2) | 0.15534 (7) | 0.0164 (4) | |
H5 | 0.5271 | 0.4973 | 0.1333 | 0.020* | |
C6 | 0.2853 (3) | 0.4755 (2) | 0.14117 (7) | 0.0191 (4) | |
H6A | 0.2777 | 0.3897 | 0.1501 | 0.023* | |
H6B | 0.2015 | 0.5207 | 0.1568 | 0.023* | |
C7 | 0.2499 (3) | 0.4829 (2) | 0.09360 (7) | 0.0200 (5) | |
C8 | 0.7803 (3) | 0.4010 (2) | 0.17338 (7) | 0.0174 (4) | |
C9 | 0.6201 (3) | 0.36277 (19) | 0.19238 (7) | 0.0172 (4) | |
H9 | 0.6436 | 0.3283 | 0.2214 | 0.021* | |
C10 | 0.5048 (3) | 0.4712 (2) | 0.19984 (7) | 0.0169 (4) | |
C11 | 0.5487 (3) | 0.2586 (2) | 0.16552 (7) | 0.0184 (4) | |
H11A | 0.4458 | 0.2333 | 0.1783 | 0.022* | |
H11B | 0.5280 | 0.2874 | 0.1359 | 0.022* | |
C12 | 0.6618 (3) | 0.1505 (2) | 0.16406 (8) | 0.0212 (5) | |
H12A | 0.6235 | 0.0933 | 0.1418 | 0.025* | |
H12B | 0.6574 | 0.1084 | 0.1921 | 0.025* | |
C13 | 0.8391 (3) | 0.1833 (2) | 0.15411 (7) | 0.0187 (5) | |
C14 | 0.8571 (3) | 0.31658 (19) | 0.14091 (7) | 0.0170 (4) | |
H14 | 0.9738 | 0.3352 | 0.1406 | 0.020* | |
C15 | 0.7927 (3) | 0.3404 (2) | 0.09497 (7) | 0.0187 (4) | |
H15A | 0.6988 | 0.3943 | 0.0975 | 0.022* | |
H15B | 0.8755 | 0.3853 | 0.0788 | 0.022* | |
C16 | 0.7446 (3) | 0.2319 (2) | 0.06835 (7) | 0.0196 (5) | |
C17 | 0.8969 (3) | 0.1031 (2) | 0.11665 (7) | 0.0198 (5) | |
H17 | 0.8806 | 0.0173 | 0.1259 | 0.024* | |
C18 | 0.9417 (3) | 0.1573 (2) | 0.19414 (7) | 0.0252 (5) | |
H18A | 1.0508 | 0.1857 | 0.1891 | 0.038* | |
H18B | 0.9429 | 0.0700 | 0.1998 | 0.038* | |
H18C | 0.8966 | 0.1997 | 0.2190 | 0.038* | |
C19 | 0.3680 (3) | 0.4315 (2) | 0.22968 (7) | 0.0200 (5) | |
H19A | 0.4090 | 0.4204 | 0.2589 | 0.030* | |
H19B | 0.3230 | 0.3551 | 0.2193 | 0.030* | |
H19C | 0.2848 | 0.4939 | 0.2298 | 0.030* | |
C20 | 1.0686 (3) | 0.1145 (2) | 0.10408 (8) | 0.0229 (5) | |
C21 | 1.1915 (3) | 0.0517 (3) | 0.12110 (9) | 0.0388 (7) | |
H21 | 1.1806 | −0.0064 | 0.1435 | 0.047* | |
C22 | 1.1390 (3) | 0.1892 (2) | 0.07166 (9) | 0.0291 (6) | |
H22 | 1.0848 | 0.2445 | 0.0534 | 0.035* | |
C23 | 1.2970 (3) | 0.1660 (2) | 0.07200 (10) | 0.0352 (6) | |
H23 | 1.3731 | 0.2034 | 0.0536 | 0.042* | |
C28 | 0.3676 (3) | 0.7303 (2) | 0.12087 (7) | 0.0227 (5) | |
H28A | 0.2525 | 0.7192 | 0.1246 | 0.034* | |
H28B | 0.4003 | 0.6966 | 0.0931 | 0.034* | |
H28C | 0.3931 | 0.8168 | 0.1217 | 0.034* | |
C29 | 0.3932 (3) | 0.7090 (2) | 0.20030 (7) | 0.0216 (5) | |
H29A | 0.3890 | 0.7986 | 0.2004 | 0.026* | |
H29B | 0.2834 | 0.6783 | 0.2046 | 0.026* | |
C30 | 0.8289 (3) | 0.5291 (2) | 0.17323 (7) | 0.0186 (4) | |
H30 | 0.9032 | 0.5542 | 0.1497 | 0.022* | |
C31 | 0.3549 (4) | 0.4634 (3) | 0.02342 (7) | 0.0309 (6) | |
H31A | 0.2752 | 0.4020 | 0.0160 | 0.046* | |
H31B | 0.4555 | 0.4450 | 0.0088 | 0.046* | |
H31C | 0.3168 | 0.5433 | 0.0143 | 0.046* | |
C32 | 0.8270 (3) | 0.7374 (2) | 0.10287 (7) | 0.0201 (5) | |
C33 | 0.8800 (3) | 0.7130 (2) | 0.05808 (7) | 0.0217 (5) | |
C34 | 0.8116 (3) | 0.6249 (2) | 0.03490 (7) | 0.0239 (5) | |
H34 | 0.7187 | 0.5880 | 0.0464 | 0.029* | |
C35 | 0.8694 (4) | 0.5802 (3) | −0.00750 (8) | 0.0334 (6) | |
H35A | 0.9248 | 0.6458 | −0.0226 | 0.050* | |
H35B | 0.7784 | 0.5530 | −0.0248 | 0.050* | |
H35C | 0.9430 | 0.5124 | −0.0030 | 0.050* | |
C36 | 1.0232 (3) | 0.7845 (3) | 0.04405 (8) | 0.0308 (6) | |
H36A | 1.1197 | 0.7488 | 0.0565 | 0.046* | |
H36B | 1.0125 | 0.8684 | 0.0539 | 0.046* | |
H36C | 1.0309 | 0.7831 | 0.0126 | 0.046* | |
O1 | 0.6661 (2) | 0.53802 (16) | 0.26154 (5) | 0.0239 (4) | |
H1 | 0.7477 | 0.4960 | 0.2567 | 0.036* | |
O2 | 0.69261 (19) | 0.67773 (14) | 0.11384 (5) | 0.0196 (3) | |
O3 | 0.8976 (2) | 0.80205 (15) | 0.12781 (5) | 0.0266 (4) | |
O4 | 0.1193 (2) | 0.50008 (15) | 0.07891 (6) | 0.0272 (4) | |
O5 | 0.3803 (2) | 0.46342 (16) | 0.06975 (5) | 0.0231 (4) | |
O6 | 0.89406 (19) | 0.44735 (15) | 0.20546 (5) | 0.0208 (3) | |
O7 | 0.6602 (2) | 0.24246 (16) | 0.03686 (5) | 0.0278 (4) | |
O8 | 0.7975 (2) | 0.12148 (15) | 0.07864 (5) | 0.0217 (3) | |
O9 | 1.3317 (2) | 0.0814 (2) | 0.10248 (7) | 0.0412 (5) | |
O10 | 0.4921 (2) | 0.66853 (14) | 0.23485 (5) | 0.0219 (4) |
U11 | U22 | U33 | U12 | U13 | U23 | |
C1 | 0.0233 (11) | 0.0216 (11) | 0.0137 (9) | 0.0018 (9) | −0.0003 (9) | −0.0023 (8) |
C2 | 0.0207 (11) | 0.0168 (10) | 0.0172 (10) | −0.0010 (9) | −0.0009 (9) | −0.0035 (8) |
C3 | 0.0237 (11) | 0.0167 (10) | 0.0163 (10) | −0.0004 (9) | 0.0006 (9) | −0.0030 (8) |
C4 | 0.0189 (11) | 0.0180 (10) | 0.0167 (10) | 0.0014 (9) | 0.0005 (9) | −0.0022 (8) |
C5 | 0.0167 (10) | 0.0174 (10) | 0.0150 (10) | 0.0016 (9) | 0.0001 (8) | −0.0001 (8) |
C6 | 0.0177 (11) | 0.0216 (11) | 0.0179 (10) | 0.0006 (9) | 0.0000 (9) | −0.0009 (9) |
C7 | 0.0219 (11) | 0.0136 (10) | 0.0246 (11) | −0.0029 (9) | −0.0029 (9) | 0.0004 (9) |
C8 | 0.0186 (11) | 0.0183 (10) | 0.0152 (9) | 0.0020 (9) | −0.0009 (9) | 0.0005 (8) |
C9 | 0.0182 (10) | 0.0194 (10) | 0.0140 (9) | 0.0011 (9) | 0.0016 (9) | 0.0012 (8) |
C10 | 0.0169 (10) | 0.0191 (10) | 0.0147 (10) | 0.0015 (9) | 0.0009 (8) | −0.0006 (8) |
C11 | 0.0192 (10) | 0.0170 (10) | 0.0189 (10) | −0.0008 (9) | 0.0026 (8) | 0.0002 (8) |
C12 | 0.0242 (12) | 0.0157 (10) | 0.0236 (11) | 0.0002 (9) | 0.0071 (9) | 0.0024 (9) |
C13 | 0.0218 (11) | 0.0172 (10) | 0.0172 (10) | 0.0033 (9) | 0.0030 (9) | 0.0024 (8) |
C14 | 0.0177 (10) | 0.0163 (10) | 0.0171 (10) | 0.0018 (9) | 0.0013 (8) | 0.0008 (8) |
C15 | 0.0216 (11) | 0.0183 (10) | 0.0162 (10) | 0.0027 (9) | 0.0031 (9) | 0.0006 (8) |
C16 | 0.0183 (11) | 0.0245 (11) | 0.0161 (10) | 0.0004 (9) | 0.0051 (9) | 0.0001 (9) |
C17 | 0.0241 (11) | 0.0160 (10) | 0.0193 (10) | 0.0018 (9) | 0.0013 (9) | 0.0004 (8) |
C18 | 0.0308 (13) | 0.0244 (12) | 0.0204 (11) | 0.0066 (10) | 0.0034 (10) | 0.0038 (9) |
C19 | 0.0219 (11) | 0.0222 (11) | 0.0160 (10) | 0.0025 (10) | 0.0052 (9) | 0.0004 (8) |
C20 | 0.0255 (12) | 0.0209 (11) | 0.0224 (11) | 0.0031 (10) | 0.0015 (9) | −0.0073 (9) |
C21 | 0.0335 (15) | 0.0531 (18) | 0.0297 (13) | 0.0206 (14) | 0.0047 (12) | 0.0016 (13) |
C22 | 0.0263 (13) | 0.0221 (12) | 0.0388 (14) | 0.0007 (10) | 0.0089 (11) | 0.0014 (10) |
C23 | 0.0289 (14) | 0.0248 (13) | 0.0518 (17) | −0.0064 (12) | 0.0125 (12) | −0.0126 (12) |
C28 | 0.0245 (12) | 0.0199 (11) | 0.0237 (11) | 0.0046 (10) | −0.0017 (9) | 0.0000 (9) |
C29 | 0.0251 (12) | 0.0200 (11) | 0.0198 (11) | 0.0053 (10) | 0.0014 (10) | −0.0025 (9) |
C30 | 0.0179 (10) | 0.0200 (10) | 0.0178 (10) | 0.0005 (9) | −0.0009 (9) | 0.0001 (8) |
C31 | 0.0377 (14) | 0.0392 (14) | 0.0160 (11) | −0.0076 (13) | −0.0023 (10) | −0.0010 (10) |
C32 | 0.0224 (11) | 0.0158 (10) | 0.0220 (11) | 0.0014 (9) | −0.0011 (9) | 0.0047 (9) |
C33 | 0.0217 (11) | 0.0227 (11) | 0.0206 (11) | 0.0031 (10) | 0.0000 (9) | 0.0068 (9) |
C34 | 0.0254 (12) | 0.0260 (12) | 0.0203 (10) | 0.0061 (10) | −0.0013 (10) | 0.0034 (9) |
C35 | 0.0393 (15) | 0.0390 (15) | 0.0220 (12) | 0.0101 (13) | −0.0014 (11) | −0.0037 (11) |
C36 | 0.0282 (13) | 0.0383 (14) | 0.0260 (12) | −0.0044 (12) | 0.0022 (11) | 0.0097 (11) |
O1 | 0.0276 (9) | 0.0288 (9) | 0.0153 (7) | 0.0019 (8) | −0.0035 (7) | −0.0013 (7) |
O2 | 0.0229 (8) | 0.0194 (8) | 0.0165 (7) | −0.0025 (7) | 0.0030 (6) | −0.0014 (6) |
O3 | 0.0325 (10) | 0.0221 (8) | 0.0251 (8) | −0.0089 (8) | −0.0013 (8) | −0.0023 (7) |
O4 | 0.0222 (9) | 0.0289 (9) | 0.0306 (9) | −0.0016 (7) | −0.0080 (7) | 0.0044 (7) |
O5 | 0.0246 (8) | 0.0280 (8) | 0.0169 (7) | −0.0024 (8) | 0.0000 (7) | −0.0037 (7) |
O6 | 0.0211 (8) | 0.0215 (8) | 0.0199 (7) | 0.0001 (7) | −0.0042 (7) | 0.0008 (6) |
O7 | 0.0291 (9) | 0.0346 (9) | 0.0197 (8) | 0.0046 (8) | −0.0028 (7) | −0.0029 (7) |
O8 | 0.0234 (8) | 0.0201 (8) | 0.0216 (8) | 0.0005 (7) | 0.0008 (7) | −0.0035 (6) |
O9 | 0.0268 (10) | 0.0582 (14) | 0.0385 (11) | 0.0118 (10) | −0.0020 (9) | −0.0137 (10) |
O10 | 0.0281 (9) | 0.0216 (8) | 0.0160 (7) | 0.0040 (7) | 0.0015 (7) | −0.0048 (6) |
C1—O1 | 1.404 (3) | C16—O8 | 1.336 (3) |
C1—O10 | 1.424 (3) | C17—O8 | 1.460 (3) |
C1—C2 | 1.537 (3) | C17—C20 | 1.498 (3) |
C1—C10 | 1.546 (3) | C17—H17 | 1.0000 |
C2—C30 | 1.514 (3) | C18—H18A | 0.9800 |
C2—C3 | 1.545 (3) | C18—H18B | 0.9800 |
C2—H2 | 1.0000 | C18—H18C | 0.9800 |
C3—O2 | 1.454 (3) | C19—H19A | 0.9800 |
C3—C4 | 1.529 (3) | C19—H19B | 0.9800 |
C3—H3 | 1.0000 | C19—H19C | 0.9800 |
C4—C29 | 1.525 (3) | C20—C21 | 1.350 (4) |
C4—C28 | 1.527 (3) | C20—C22 | 1.429 (4) |
C4—C5 | 1.559 (3) | C21—O9 | 1.351 (4) |
C5—C6 | 1.530 (3) | C21—H21 | 0.9500 |
C5—C10 | 1.576 (3) | C22—C23 | 1.350 (4) |
C5—H5 | 1.0000 | C22—H22 | 0.9500 |
C6—C7 | 1.510 (3) | C23—O9 | 1.362 (4) |
C6—H6A | 0.9900 | C23—H23 | 0.9500 |
C6—H6B | 0.9900 | C28—H28A | 0.9800 |
C7—O4 | 1.202 (3) | C28—H28B | 0.9800 |
C7—O5 | 1.339 (3) | C28—H28C | 0.9800 |
C8—O6 | 1.472 (3) | C29—O10 | 1.429 (3) |
C8—C30 | 1.472 (3) | C29—H29A | 0.9900 |
C8—C14 | 1.518 (3) | C29—H29B | 0.9900 |
C8—C9 | 1.527 (3) | C30—O6 | 1.455 (3) |
C9—C11 | 1.542 (3) | C30—H30 | 1.0000 |
C9—C10 | 1.557 (3) | C31—O5 | 1.455 (3) |
C9—H9 | 1.0000 | C31—H31A | 0.9800 |
C10—C19 | 1.539 (3) | C31—H31B | 0.9800 |
C11—C12 | 1.525 (3) | C31—H31C | 0.9800 |
C11—H11A | 0.9900 | C32—O3 | 1.209 (3) |
C11—H11B | 0.9900 | C32—O2 | 1.349 (3) |
C12—C13 | 1.561 (3) | C32—C33 | 1.486 (3) |
C12—H12A | 0.9900 | C33—C34 | 1.339 (3) |
C12—H12B | 0.9900 | C33—C36 | 1.503 (3) |
C13—C14 | 1.536 (3) | C34—C35 | 1.488 (3) |
C13—C18 | 1.540 (3) | C34—H34 | 0.9500 |
C13—C17 | 1.541 (3) | C35—H35A | 0.9800 |
C14—C15 | 1.549 (3) | C35—H35B | 0.9800 |
C14—H14 | 1.0000 | C35—H35C | 0.9800 |
C15—C16 | 1.511 (3) | C36—H36A | 0.9800 |
C15—H15A | 0.9900 | C36—H36B | 0.9800 |
C15—H15B | 0.9900 | C36—H36C | 0.9800 |
C16—O7 | 1.213 (3) | O1—H1 | 0.8400 |
O1—C1—O10 | 102.93 (16) | H15A—C15—H15B | 107.2 |
O1—C1—C2 | 111.83 (19) | O7—C16—O8 | 118.3 (2) |
O10—C1—C2 | 108.37 (18) | O7—C16—C15 | 121.4 (2) |
O1—C1—C10 | 112.88 (18) | O8—C16—C15 | 120.26 (19) |
O10—C1—C10 | 110.26 (18) | O8—C17—C20 | 109.06 (18) |
C2—C1—C10 | 110.26 (17) | O8—C17—C13 | 110.62 (18) |
C30—C2—C1 | 110.99 (18) | C20—C17—C13 | 116.84 (19) |
C30—C2—C3 | 113.69 (18) | O8—C17—H17 | 106.6 |
C1—C2—C3 | 107.30 (18) | C20—C17—H17 | 106.6 |
C30—C2—H2 | 108.2 | C13—C17—H17 | 106.6 |
C1—C2—H2 | 108.2 | C13—C18—H18A | 109.5 |
C3—C2—H2 | 108.2 | C13—C18—H18B | 109.5 |
O2—C3—C4 | 106.98 (17) | H18A—C18—H18B | 109.5 |
O2—C3—C2 | 112.33 (18) | C13—C18—H18C | 109.5 |
C4—C3—C2 | 109.95 (18) | H18A—C18—H18C | 109.5 |
O2—C3—H3 | 109.2 | H18B—C18—H18C | 109.5 |
C4—C3—H3 | 109.2 | C10—C19—H19A | 109.5 |
C2—C3—H3 | 109.2 | C10—C19—H19B | 109.5 |
C29—C4—C28 | 109.30 (18) | H19A—C19—H19B | 109.5 |
C29—C4—C3 | 104.77 (18) | C10—C19—H19C | 109.5 |
C28—C4—C3 | 110.43 (19) | H19A—C19—H19C | 109.5 |
C29—C4—C5 | 109.33 (18) | H19B—C19—H19C | 109.5 |
C28—C4—C5 | 115.08 (18) | C21—C20—C22 | 105.0 (2) |
C3—C4—C5 | 107.43 (18) | C21—C20—C17 | 126.1 (2) |
C6—C5—C4 | 113.65 (19) | C22—C20—C17 | 129.0 (2) |
C6—C5—C10 | 113.09 (18) | C20—C21—O9 | 111.8 (3) |
C4—C5—C10 | 109.14 (18) | C20—C21—H21 | 124.1 |
C6—C5—H5 | 106.8 | O9—C21—H21 | 124.1 |
C4—C5—H5 | 106.8 | C23—C22—C20 | 106.9 (3) |
C10—C5—H5 | 106.8 | C23—C22—H22 | 126.6 |
C7—C6—C5 | 115.98 (19) | C20—C22—H22 | 126.6 |
C7—C6—H6A | 108.3 | C22—C23—O9 | 110.2 (3) |
C5—C6—H6A | 108.3 | C22—C23—H23 | 124.9 |
C7—C6—H6B | 108.3 | O9—C23—H23 | 124.9 |
C5—C6—H6B | 108.3 | C4—C28—H28A | 109.5 |
H6A—C6—H6B | 107.4 | C4—C28—H28B | 109.5 |
O4—C7—O5 | 124.0 (2) | H28A—C28—H28B | 109.5 |
O4—C7—C6 | 124.0 (2) | C4—C28—H28C | 109.5 |
O5—C7—C6 | 111.90 (19) | H28A—C28—H28C | 109.5 |
O6—C8—C30 | 59.23 (13) | H28B—C28—H28C | 109.5 |
O6—C8—C14 | 112.87 (18) | O10—C29—C4 | 111.23 (18) |
C30—C8—C14 | 118.07 (19) | O10—C29—H29A | 109.4 |
O6—C8—C9 | 113.87 (17) | C4—C29—H29A | 109.4 |
C30—C8—C9 | 120.70 (19) | O10—C29—H29B | 109.4 |
C14—C8—C9 | 117.45 (18) | C4—C29—H29B | 109.4 |
C8—C9—C11 | 109.77 (17) | H29A—C29—H29B | 108.0 |
C8—C9—C10 | 113.02 (18) | O6—C30—C8 | 60.37 (14) |
C11—C9—C10 | 114.46 (18) | O6—C30—C2 | 113.99 (18) |
C8—C9—H9 | 106.3 | C8—C30—C2 | 121.8 (2) |
C11—C9—H9 | 106.3 | O6—C30—H30 | 116.2 |
C10—C9—H9 | 106.3 | C8—C30—H30 | 116.2 |
C19—C10—C1 | 108.32 (17) | C2—C30—H30 | 116.2 |
C19—C10—C9 | 109.48 (18) | O5—C31—H31A | 109.5 |
C1—C10—C9 | 108.61 (17) | O5—C31—H31B | 109.5 |
C19—C10—C5 | 114.11 (18) | H31A—C31—H31B | 109.5 |
C1—C10—C5 | 106.07 (17) | O5—C31—H31C | 109.5 |
C9—C10—C5 | 110.08 (17) | H31A—C31—H31C | 109.5 |
C12—C11—C9 | 111.02 (19) | H31B—C31—H31C | 109.5 |
C12—C11—H11A | 109.4 | O3—C32—O2 | 122.4 (2) |
C9—C11—H11A | 109.4 | O3—C32—C33 | 124.2 (2) |
C12—C11—H11B | 109.4 | O2—C32—C33 | 113.45 (19) |
C9—C11—H11B | 109.4 | C34—C33—C32 | 120.5 (2) |
H11A—C11—H11B | 108.0 | C34—C33—C36 | 124.6 (2) |
C11—C12—C13 | 114.63 (18) | C32—C33—C36 | 114.5 (2) |
C11—C12—H12A | 108.6 | C33—C34—C35 | 125.3 (2) |
C13—C12—H12A | 108.6 | C33—C34—H34 | 117.3 |
C11—C12—H12B | 108.6 | C35—C34—H34 | 117.3 |
C13—C12—H12B | 108.6 | C34—C35—H35A | 109.5 |
H12A—C12—H12B | 107.6 | C34—C35—H35B | 109.5 |
C14—C13—C18 | 109.84 (19) | H35A—C35—H35B | 109.5 |
C14—C13—C17 | 108.53 (17) | C34—C35—H35C | 109.5 |
C18—C13—C17 | 109.13 (18) | H35A—C35—H35C | 109.5 |
C14—C13—C12 | 111.65 (18) | H35B—C35—H35C | 109.5 |
C18—C13—C12 | 109.20 (18) | C33—C36—H36A | 109.5 |
C17—C13—C12 | 108.44 (19) | C33—C36—H36B | 109.5 |
C8—C14—C13 | 111.67 (17) | H36A—C36—H36B | 109.5 |
C8—C14—C15 | 111.12 (18) | C33—C36—H36C | 109.5 |
C13—C14—C15 | 112.00 (18) | H36A—C36—H36C | 109.5 |
C8—C14—H14 | 107.2 | H36B—C36—H36C | 109.5 |
C13—C14—H14 | 107.2 | C1—O1—H1 | 109.5 |
C15—C14—H14 | 107.2 | C32—O2—C3 | 115.97 (17) |
C16—C15—C14 | 117.57 (18) | C7—O5—C31 | 115.3 (2) |
C16—C15—H15A | 107.9 | C30—O6—C8 | 60.40 (13) |
C14—C15—H15A | 107.9 | C16—O8—C17 | 120.65 (17) |
C16—C15—H15B | 107.9 | C21—O9—C23 | 106.2 (2) |
C14—C15—H15B | 107.9 | C1—O10—C29 | 112.70 (15) |
O1—C1—C2—C30 | 73.3 (2) | C9—C8—C14—C15 | 85.2 (2) |
O10—C1—C2—C30 | −173.89 (17) | C18—C13—C14—C8 | −69.2 (2) |
C10—C1—C2—C30 | −53.1 (2) | C17—C13—C14—C8 | 171.59 (18) |
O1—C1—C2—C3 | −161.90 (17) | C12—C13—C14—C8 | 52.1 (2) |
O10—C1—C2—C3 | −49.1 (2) | C18—C13—C14—C15 | 165.47 (18) |
C10—C1—C2—C3 | 71.6 (2) | C17—C13—C14—C15 | 46.2 (2) |
C30—C2—C3—O2 | −12.4 (3) | C12—C13—C14—C15 | −73.2 (2) |
C1—C2—C3—O2 | −135.55 (18) | C8—C14—C15—C16 | −133.7 (2) |
C30—C2—C3—C4 | 106.6 (2) | C13—C14—C15—C16 | −8.0 (3) |
C1—C2—C3—C4 | −16.5 (2) | C14—C15—C16—O7 | 162.6 (2) |
O2—C3—C4—C29 | −171.39 (17) | C14—C15—C16—O8 | −18.8 (3) |
C2—C3—C4—C29 | 66.4 (2) | C14—C13—C17—O8 | −62.9 (2) |
O2—C3—C4—C28 | −53.8 (2) | C18—C13—C17—O8 | 177.45 (18) |
C2—C3—C4—C28 | −176.06 (17) | C12—C13—C17—O8 | 58.6 (2) |
O2—C3—C4—C5 | 72.4 (2) | C14—C13—C17—C20 | 62.7 (3) |
C2—C3—C4—C5 | −49.8 (2) | C18—C13—C17—C20 | −57.0 (3) |
C29—C4—C5—C6 | 85.0 (2) | C12—C13—C17—C20 | −175.86 (19) |
C28—C4—C5—C6 | −38.5 (3) | O8—C17—C20—C21 | −145.8 (2) |
C3—C4—C5—C6 | −161.87 (17) | C13—C17—C20—C21 | 87.9 (3) |
C29—C4—C5—C10 | −42.3 (2) | O8—C17—C20—C22 | 32.4 (3) |
C28—C4—C5—C10 | −165.69 (18) | C13—C17—C20—C22 | −93.9 (3) |
C3—C4—C5—C10 | 70.9 (2) | C22—C20—C21—O9 | 0.6 (3) |
C4—C5—C6—C7 | 76.8 (2) | C17—C20—C21—O9 | 179.2 (2) |
C10—C5—C6—C7 | −158.06 (19) | C21—C20—C22—C23 | −0.4 (3) |
C5—C6—C7—O4 | −146.4 (2) | C17—C20—C22—C23 | −178.9 (2) |
C5—C6—C7—O5 | 36.0 (3) | C20—C22—C23—O9 | 0.1 (3) |
O6—C8—C9—C11 | −149.39 (18) | C28—C4—C29—O10 | −168.90 (19) |
C30—C8—C9—C11 | 143.4 (2) | C3—C4—C29—O10 | −50.6 (2) |
C14—C8—C9—C11 | −14.3 (3) | C5—C4—C29—O10 | 64.3 (2) |
O6—C8—C9—C10 | 81.5 (2) | C14—C8—C30—O6 | −101.3 (2) |
C30—C8—C9—C10 | 14.3 (3) | C9—C8—C30—O6 | 101.2 (2) |
C14—C8—C9—C10 | −143.36 (19) | O6—C8—C30—C2 | −101.4 (2) |
O1—C1—C10—C19 | 61.0 (2) | C14—C8—C30—C2 | 157.3 (2) |
O10—C1—C10—C19 | −53.5 (2) | C9—C8—C30—C2 | −0.2 (3) |
C2—C1—C10—C19 | −173.09 (18) | C1—C2—C30—O6 | −49.4 (2) |
O1—C1—C10—C9 | −57.8 (2) | C3—C2—C30—O6 | −170.44 (17) |
O10—C1—C10—C9 | −172.29 (16) | C1—C2—C30—C8 | 19.5 (3) |
C2—C1—C10—C9 | 68.1 (2) | C3—C2—C30—C8 | −101.6 (2) |
O1—C1—C10—C5 | −176.07 (18) | O3—C32—C33—C34 | 168.5 (2) |
O10—C1—C10—C5 | 69.4 (2) | O2—C32—C33—C34 | −10.0 (3) |
C2—C1—C10—C5 | −50.2 (2) | O3—C32—C33—C36 | −5.3 (3) |
C8—C9—C10—C19 | −164.78 (18) | O2—C32—C33—C36 | 176.15 (19) |
C11—C9—C10—C19 | 68.6 (2) | C32—C33—C34—C35 | −170.6 (2) |
C8—C9—C10—C1 | −46.7 (2) | C36—C33—C34—C35 | 2.6 (4) |
C11—C9—C10—C1 | −173.34 (17) | O3—C32—O2—C3 | 3.1 (3) |
C8—C9—C10—C5 | 69.0 (2) | C33—C32—O2—C3 | −178.40 (18) |
C11—C9—C10—C5 | −57.6 (2) | C4—C3—O2—C32 | 159.42 (17) |
C6—C5—C10—C19 | −26.6 (3) | C2—C3—O2—C32 | −79.9 (2) |
C4—C5—C10—C19 | 101.0 (2) | O4—C7—O5—C31 | −0.4 (3) |
C6—C5—C10—C1 | −145.73 (18) | C6—C7—O5—C31 | 177.3 (2) |
C4—C5—C10—C1 | −18.2 (2) | C2—C30—O6—C8 | 114.2 (2) |
C6—C5—C10—C9 | 97.0 (2) | C14—C8—O6—C30 | 110.1 (2) |
C4—C5—C10—C9 | −135.48 (19) | C9—C8—O6—C30 | −112.7 (2) |
C8—C9—C11—C12 | 58.2 (2) | O7—C16—O8—C17 | −178.86 (19) |
C10—C9—C11—C12 | −173.53 (17) | C15—C16—O8—C17 | 2.5 (3) |
C9—C11—C12—C13 | −46.5 (3) | C20—C17—O8—C16 | −91.0 (2) |
C11—C12—C13—C14 | −8.9 (3) | C13—C17—O8—C16 | 38.8 (3) |
C11—C12—C13—C18 | 112.8 (2) | C20—C21—O9—C23 | −0.6 (3) |
C11—C12—C13—C17 | −128.4 (2) | C22—C23—O9—C21 | 0.3 (3) |
O6—C8—C14—C13 | 94.9 (2) | O1—C1—O10—C29 | −172.35 (18) |
C30—C8—C14—C13 | 161.04 (19) | C2—C1—O10—C29 | 69.1 (2) |
C9—C8—C14—C13 | −40.7 (3) | C10—C1—O10—C29 | −51.7 (2) |
O6—C8—C14—C15 | −139.27 (18) | C4—C29—O10—C1 | −15.1 (3) |
C30—C8—C14—C15 | −73.1 (3) |
Experimental details
Crystal data | |
Chemical formula | C32H40O10 |
Mr | 584.64 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 110 |
a, b, c (Å) | 8.3859 (4), 11.0454 (5), 31.0799 (13) |
V (Å3) | 2878.8 (2) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.46 × 0.44 × 0.25 |
Data collection | |
Diffractometer | Bruker SMART 1000 CCD diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2004) |
Tmin, Tmax | 0.956, 0.976 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 14701, 3569, 3202 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.640 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.096, 1.03 |
No. of reflections | 3569 |
No. of parameters | 386 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.59, −0.20 |
Computer programs: SMART (Bruker, 2004), SAINT-Plus (Bruker, 2004), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
Acknowledgements
Financial support of this work by the Important Project of Chinese Academy of Sciences (KSCX2-YW-R-093, KZCX2-YW-216), the National High Technology Research and Development Program of China (863 Program) (2007AA09Z407), the National Natural Science Foundation of China (20772135) and the Research Foundation for Young Talents from the South China Sea Institute of Oceanology, Chinese Academy of Sciences (M-YL SQ200802) is gratefully acknowledged.
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Two meliaceous mangroves, Xylocarpus granatum and X. moluccensis, are known for producing antifeedant limonoids, especially mexicanolides and phragmalins. Previous investigations on seeds of these two species, yielded an andirobin, an obacunol, two phragmalins, three gedunins, and 14 mexicanolides, including xyloccensins A-K (Kubo et al., 1976; Ng et al., 1979; Alvi et al., 1991; Kokpol et al., 1996; Mulholland et al., 2000). Previously, we reported the isolation and identification of eight unique 8,9,30-phragmalin ortho esters and 13 limonoids from the bark and seeds of a Chinese mangrove, X. granatum (Wu et al., 2004a, 2005, 2008a). To date, altogether 42 mexicanolides and 23 phragmalins have been isolated from the wood, seeds, and fruits of X. granatum and X. moluccensis (Wu et al., 2008b).
The title compound (I), also known as xyloccensin L (Wu et al., 2004b), was previously isolated from seeds of a Chinese mangrove, X. granatum, which was collected from the Hainan island. As part of our research on bioactive compounds from mangrove plants of the Xylocarpus genus, we obtained the title compound again from seeds of an Indian mangrove, X. moluccensis, collected in the mangrove wetlands of Godavari estuary, Andhra Pradesh. The X-ray crystal structure analysis of (I) was undertaken in order to establish its relative stereochemistry and confirm our previously reported stereostructure (Wu et al., 2004b). Two fused pyran rings, C1/C2/C3/C4/C29/O10 and C1/C10/C5/C4/C29/O10, and two cyclohexane rings, C1/C2/C3/C4/C5/C10 and C8/C9/C11/C12/C13/C14, adopt boat conformations. However, the cyclohexane ring C1/C2/C30/C8/C9/C10 and the d-lactone ring C13/C14/C15/C16/O8/C17 are in half-chair conformations. In the crystal structure, molecules are stabilized by O—H···O intramolecular hydrogen bonds between O1/O6 (Figure 1). The whole shape of the molecule is like a cage. O1 and O10 are at the bottom of the cage, whereas the furan ring and the 3-tigloyl group are on the top of the cage. Molecules are arranged like cages in an alternating bottom-to-bottom and top-to-top fashion along the b axis (Fig. 2).