metal-organic compounds
Hexaaquanickel(II) tetraaquabis(μ-pyridine-2,6-dicarboxylato)bis(pyridine-2,6-dicarboxylato)trinickelate(II) octahydrate
aDepartment of Chemistry, Islamic Azad University, Qom Branch, Qom, Iran, bDepartment of Chemistry, Faculty of Science, Payame Noor University (PNU), Qom, Iran, cDepartment of Chemistry, Iran University of Science and Technology, Tehran, Iran, dDepartment of Chemistry, Faculty of Science, University of Kurdistan, Sanandaj, Iran, and eDepartment of Chemistry, Islamic Azad University, North Tehran Branch, Tehran, Iran
*Correspondence e-mail: javad1338@hotmail.com
The title compound, [Ni(H2O)6][Ni3(C7H3NO4)4(H2O)4]·8H2O, was obtained by the reaction of nickel(II) nitrate hexahydrate with pyridine-2,6-dicarboxylic acid (pydcH2) and 1,10-phenanothroline (phen) in an aqueous solution. The latter ligand is not involved in formation of the title complex. There are three different NiII atoms in the two of which are located on inversion centers, and thus the [Ni(H2O)6]2+ cation and the trinuclear {[Ni(pydc)2]2-μ-Ni(H2O)4}2− anion are centrosymmetric. All NiII atoms exhibit an octahedral coordination geometry. Various interactions, including numerous O—H⋯O and C—H⋯O hydrogen bonds and C—O⋯π stacking of the pyridine and carboxylate groups [3.570 (1), 3.758 (1) and 3.609 (1) Å], are observed in the crystal structure.
Related literature
For metal complexes formed by pyridinedicarboxylic acids, see: Aghabozorg et al. (2008); Çolak et al. (2008); Moghimi et al. (2005).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536810028977/gk2279sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810028977/gk2279Isup2.hkl
To an aqueous solution of Ni(NO3)2.6H2O (143 mg, 0.5 mmol), an aqueous solution of pydcH2 (167 mg, 1 mmol) and phen (198 mg, 1 mmol) in 1:2:2 molar ratio was added. The final volume was 40 ml. After less than 1 h stirring and heating, the obtained clear solution was left for 2 weeks. Then emerald green crystals were settled in the solution which were suitable for X-ray crystallography.
The H atoms of the water molecules were found in difference Fourier maps and the O-H bond lengths were constrained to 0.85 Å. The H atoms from C-H groups were placed in calculated positions. All H atoms were refined in riding model approximation with Uiso(H) = 1.2Ueq(C) or 1.5Ueq(O).
Pyridinedicarboxylic acid and 1,10-phenanthroline are well known ligands in coordination chemistry (Çolak et al., 2008). In our group, many compounds are synthesized by proton transfer between the two compounds (phenH)2(pydc) (Moghimi et al., 2005). Also, many metallic compounds have been reported (Aghabozorg et al., 2008).
The considerable case in the title compound is that despite of the presence of phen in the preparation solution, only pydc is involved in the complex formation. In the
the Ni atom is in three types. In the anionic part, Ni1 is coordinated by two (pydc)2– groups, and Ni2 is coordinated by four water molecules and two uncoordinated O atoms of two (pydc)2– groups linked to Ni1. As shown in Fig.1, this causes that Ni2 makes a bridge between Ni1 and Ni1A. In the cationic part, Ni3 is simply coordinated by six water molecules.As given in Table 1 and Figs. 2–3, there are nomerous hydrogen bonds of the type O—H···O between water molecules and O atoms of (pydc)2–, and C—H···O between C atoms of pyridine rings and water molecules. Also, C—O···π stackings present in the are as follows: C6—O2···Cg1(N1/C1—C5), 3.570 (1) Å, C14—O8···Cg2 (N2/C8—C12), 3.758 (1) Å, and C7—O4···Cg1(N1/C1—C5), 3.609 (1) Å.
For metal complexes formed by pyridinedicarboxylic acids, see: Aghabozorg et al. (2008); Çolak et al. (2008); Moghimi et al. (2005).
Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. View of the title compound with displacement ellipsoids at the 50 % probability level. Symmetry codes to generate equivalent atoms: #a -x, -y+1, -z+1; #b -x+1,-y+1,-z. | |
Fig. 2. Hydrogen bonding pattern. Hydrogen bonds are shown with dashed lines.Symmetry transformations used to generate equivalent atoms: #A x, -y + 3/2; z + 1/2; #B x, y, z + 1; #C x, y, z - 1; #D x, -y + 1/2, z - 1/2; #E -x, -y + 1, -z; #F x, -y + 3/2, z - 1/2. | |
Fig. 3. Crystal packing fragment along the b crystal axis. Hydrogen bonds are shown with dashed lines. Only H atoms that take part in hydrogen bonding are depicted for clarity. |
[Ni(H2O)6][Ni3(C7H3NO4)4(H2O)4]·8H2O | F(000) = 1256 |
Mr = 1219.54 | Dx = 1.765 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 8450 reflections |
a = 20.4561 (5) Å | θ = 2.6–33.9° |
b = 12.7587 (3) Å | µ = 1.73 mm−1 |
c = 8.8582 (2) Å | T = 100 K |
β = 96.942 (1)° | Prism, green |
V = 2294.98 (9) Å3 | 0.35 × 0.13 × 0.07 mm |
Z = 2 |
Bruker APEXII CCD area-detector diffractometer | 6068 independent reflections |
Radiation source: fine-focus sealed tube | 4899 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.062 |
ω scans | θmax = 29.0°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −27→27 |
Tmin = 0.760, Tmax = 0.888 | k = −17→17 |
27378 measured reflections | l = −12→12 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.027 | Hydrogen site location: mixed |
wR(F2) = 0.064 | H-atom parameters constrained |
S = 1.00 | w = 1/[σ2(Fo2) + (0.025P)2] where P = (Fo2 + 2Fc2)/3 |
6068 reflections | (Δ/σ)max = 0.001 |
319 parameters | Δρmax = 0.83 e Å−3 |
0 restraints | Δρmin = −0.62 e Å−3 |
[Ni(H2O)6][Ni3(C7H3NO4)4(H2O)4]·8H2O | V = 2294.98 (9) Å3 |
Mr = 1219.54 | Z = 2 |
Monoclinic, P21/c | Mo Kα radiation |
a = 20.4561 (5) Å | µ = 1.73 mm−1 |
b = 12.7587 (3) Å | T = 100 K |
c = 8.8582 (2) Å | 0.35 × 0.13 × 0.07 mm |
β = 96.942 (1)° |
Bruker APEXII CCD area-detector diffractometer | 6068 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 4899 reflections with I > 2σ(I) |
Tmin = 0.760, Tmax = 0.888 | Rint = 0.062 |
27378 measured reflections |
R[F2 > 2σ(F2)] = 0.027 | 0 restraints |
wR(F2) = 0.064 | H-atom parameters constrained |
S = 1.00 | Δρmax = 0.83 e Å−3 |
6068 reflections | Δρmin = −0.62 e Å−3 |
319 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Ni1 | 0.231007 (11) | 0.520201 (16) | 0.27476 (3) | 0.00945 (6) | |
Ni2 | 0.0000 | 0.5000 | 0.5000 | 0.00895 (7) | |
Ni3 | 0.5000 | 0.5000 | 0.0000 | 0.01050 (7) | |
O1 | 0.30490 (6) | 0.51969 (9) | 0.46564 (14) | 0.0142 (3) | |
O2 | 0.38195 (6) | 0.62577 (10) | 0.58535 (14) | 0.0168 (3) | |
O3 | 0.16507 (6) | 0.58836 (9) | 0.09653 (14) | 0.0136 (3) | |
O4 | 0.12370 (6) | 0.74544 (9) | 0.02196 (14) | 0.0152 (3) | |
O5 | 0.14709 (6) | 0.51140 (9) | 0.39541 (14) | 0.0131 (3) | |
O6 | 0.06993 (6) | 0.39623 (9) | 0.44857 (14) | 0.0124 (3) | |
O7 | 0.30351 (6) | 0.46255 (9) | 0.14135 (14) | 0.0130 (3) | |
O8 | 0.33719 (6) | 0.31334 (9) | 0.04162 (14) | 0.0159 (3) | |
N1 | 0.25177 (7) | 0.66974 (11) | 0.29750 (16) | 0.0100 (3) | |
N2 | 0.20957 (7) | 0.37003 (10) | 0.26000 (16) | 0.0095 (3) | |
C1 | 0.29991 (8) | 0.69995 (13) | 0.40384 (19) | 0.0111 (3) | |
C2 | 0.31588 (9) | 0.80472 (14) | 0.4262 (2) | 0.0145 (4) | |
H2A | 0.3507 | 0.8258 | 0.5008 | 0.017* | |
C3 | 0.27913 (9) | 0.87836 (13) | 0.3356 (2) | 0.0147 (4) | |
H3A | 0.2887 | 0.9509 | 0.3485 | 0.018* | |
C4 | 0.22850 (9) | 0.84595 (13) | 0.2262 (2) | 0.0130 (4) | |
H4A | 0.2030 | 0.8954 | 0.1643 | 0.016* | |
C5 | 0.21645 (8) | 0.73898 (13) | 0.21023 (19) | 0.0101 (3) | |
C6 | 0.33232 (8) | 0.60828 (14) | 0.4934 (2) | 0.0124 (3) | |
C7 | 0.16388 (8) | 0.68773 (13) | 0.09888 (19) | 0.0111 (3) | |
C8 | 0.15876 (8) | 0.33432 (13) | 0.32572 (19) | 0.0102 (3) | |
C9 | 0.14264 (9) | 0.22888 (13) | 0.3229 (2) | 0.0132 (4) | |
H9A | 0.1062 | 0.2038 | 0.3694 | 0.016* | |
C10 | 0.18182 (9) | 0.16074 (13) | 0.2493 (2) | 0.0141 (4) | |
H10A | 0.1725 | 0.0878 | 0.2467 | 0.017* | |
C11 | 0.23432 (8) | 0.19915 (13) | 0.1799 (2) | 0.0130 (4) | |
H11A | 0.2609 | 0.1533 | 0.1288 | 0.016* | |
C12 | 0.24700 (8) | 0.30604 (13) | 0.18706 (19) | 0.0102 (3) | |
C13 | 0.12210 (8) | 0.42038 (13) | 0.39702 (19) | 0.0108 (3) | |
C14 | 0.30067 (8) | 0.36433 (13) | 0.11794 (19) | 0.0112 (3) | |
O1W | 0.01802 (6) | 0.59383 (9) | 0.31474 (14) | 0.0138 (3) | |
H1 | 0.0598 | 0.5956 | 0.3192 | 0.021* | |
H2 | 0.0099 | 0.6586 | 0.3247 | 0.021* | |
O2W | 0.06619 (6) | 0.58178 (9) | 0.64628 (14) | 0.0132 (3) | |
H3 | 0.0894 | 0.6282 | 0.6090 | 0.020* | |
H4 | 0.0493 | 0.6161 | 0.7140 | 0.020* | |
O3W | 0.43024 (6) | 0.56054 (9) | 0.13011 (14) | 0.0146 (3) | |
H5 | 0.3947 | 0.5269 | 0.1346 | 0.022* | |
H6 | 0.4439 | 0.5949 | 0.2099 | 0.022* | |
O4W | 0.47679 (6) | 0.61160 (9) | −0.16482 (14) | 0.0161 (3) | |
H7 | 0.4418 | 0.6029 | −0.2257 | 0.024* | |
H8 | 0.4738 | 0.6773 | −0.1511 | 0.024* | |
O5W | 0.43241 (6) | 0.39907 (10) | −0.10299 (14) | 0.0191 (3) | |
H9 | 0.4006 | 0.3750 | −0.0599 | 0.029* | |
H10 | 0.4215 | 0.3998 | −0.1987 | 0.029* | |
O6W | 0.00996 (6) | 0.69298 (10) | −0.14073 (14) | 0.0161 (3) | |
H11 | 0.0463 | 0.6959 | −0.0832 | 0.024* | |
H12 | −0.0169 | 0.6531 | −0.1024 | 0.024* | |
O7W | 0.39596 (6) | 0.12448 (9) | 0.09304 (14) | 0.0155 (3) | |
H13 | 0.3764 | 0.1819 | 0.0690 | 0.023* | |
H14 | 0.3737 | 0.0707 | 0.0622 | 0.023* | |
O8W | 0.06730 (6) | 0.44404 (10) | −0.00502 (15) | 0.0195 (3) | |
H15 | 0.0422 | 0.4701 | −0.0791 | 0.029* | |
H16 | 0.0967 | 0.4913 | 0.0103 | 0.029* | |
O9W | 0.47481 (6) | 0.82603 (10) | −0.10844 (14) | 0.0179 (3) | |
H17 | 0.5157 | 0.8380 | −0.0864 | 0.027* | |
H18 | 0.4564 | 0.8473 | −0.0330 | 0.027* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Ni1 | 0.01011 (11) | 0.00744 (10) | 0.01080 (11) | −0.00024 (8) | 0.00129 (8) | −0.00014 (8) |
Ni2 | 0.00992 (15) | 0.00820 (15) | 0.00908 (15) | −0.00061 (11) | 0.00256 (12) | −0.00069 (11) |
Ni3 | 0.01054 (15) | 0.01220 (16) | 0.00858 (15) | −0.00051 (12) | 0.00045 (12) | 0.00130 (12) |
O1 | 0.0152 (6) | 0.0122 (6) | 0.0146 (6) | 0.0005 (5) | −0.0003 (5) | 0.0015 (5) |
O2 | 0.0147 (6) | 0.0218 (7) | 0.0128 (6) | −0.0014 (5) | −0.0025 (5) | 0.0018 (5) |
O3 | 0.0146 (6) | 0.0090 (6) | 0.0166 (7) | 0.0002 (5) | −0.0012 (5) | −0.0017 (5) |
O4 | 0.0155 (6) | 0.0123 (6) | 0.0164 (7) | 0.0028 (5) | −0.0035 (5) | 0.0008 (5) |
O5 | 0.0130 (6) | 0.0095 (6) | 0.0175 (6) | −0.0009 (5) | 0.0051 (5) | −0.0022 (5) |
O6 | 0.0121 (6) | 0.0111 (6) | 0.0145 (6) | −0.0003 (5) | 0.0035 (5) | −0.0005 (5) |
O7 | 0.0152 (6) | 0.0094 (6) | 0.0148 (6) | −0.0010 (5) | 0.0038 (5) | 0.0011 (5) |
O8 | 0.0177 (6) | 0.0133 (6) | 0.0185 (7) | 0.0018 (5) | 0.0098 (6) | −0.0004 (5) |
N1 | 0.0103 (7) | 0.0098 (7) | 0.0103 (7) | −0.0004 (5) | 0.0022 (6) | −0.0008 (5) |
N2 | 0.0103 (7) | 0.0087 (7) | 0.0092 (7) | −0.0001 (5) | −0.0004 (6) | 0.0000 (5) |
C1 | 0.0112 (8) | 0.0130 (8) | 0.0096 (8) | −0.0011 (6) | 0.0023 (7) | −0.0004 (6) |
C2 | 0.0151 (9) | 0.0157 (9) | 0.0125 (9) | −0.0038 (7) | 0.0013 (7) | −0.0024 (7) |
C3 | 0.0184 (9) | 0.0084 (8) | 0.0177 (9) | −0.0027 (7) | 0.0041 (8) | −0.0029 (7) |
C4 | 0.0153 (9) | 0.0113 (8) | 0.0132 (9) | 0.0013 (7) | 0.0047 (7) | 0.0013 (7) |
C5 | 0.0096 (8) | 0.0107 (8) | 0.0104 (8) | 0.0003 (6) | 0.0031 (7) | 0.0003 (6) |
C6 | 0.0116 (8) | 0.0162 (9) | 0.0101 (8) | 0.0005 (7) | 0.0045 (7) | 0.0012 (7) |
C7 | 0.0117 (8) | 0.0120 (8) | 0.0102 (8) | −0.0004 (7) | 0.0042 (7) | −0.0008 (6) |
C8 | 0.0096 (8) | 0.0114 (8) | 0.0096 (8) | 0.0005 (6) | 0.0014 (7) | 0.0001 (6) |
C9 | 0.0139 (9) | 0.0116 (8) | 0.0145 (9) | −0.0014 (7) | 0.0037 (7) | 0.0000 (7) |
C10 | 0.0182 (9) | 0.0081 (8) | 0.0162 (9) | −0.0006 (7) | 0.0026 (7) | −0.0013 (7) |
C11 | 0.0143 (9) | 0.0109 (8) | 0.0141 (9) | 0.0026 (7) | 0.0021 (7) | −0.0013 (7) |
C12 | 0.0098 (8) | 0.0122 (8) | 0.0084 (8) | −0.0004 (6) | 0.0005 (6) | 0.0004 (6) |
C13 | 0.0115 (8) | 0.0116 (8) | 0.0087 (8) | 0.0011 (6) | −0.0007 (7) | −0.0007 (6) |
C14 | 0.0113 (8) | 0.0134 (8) | 0.0087 (8) | 0.0005 (7) | 0.0008 (7) | 0.0020 (6) |
O1W | 0.0148 (6) | 0.0107 (6) | 0.0165 (6) | −0.0003 (5) | 0.0043 (5) | 0.0015 (5) |
O2W | 0.0148 (6) | 0.0121 (6) | 0.0136 (6) | −0.0033 (5) | 0.0050 (5) | −0.0021 (5) |
O3W | 0.0131 (6) | 0.0161 (6) | 0.0144 (6) | −0.0019 (5) | 0.0011 (5) | −0.0013 (5) |
O4W | 0.0197 (7) | 0.0149 (6) | 0.0124 (6) | 0.0005 (5) | −0.0029 (5) | 0.0033 (5) |
O5W | 0.0198 (7) | 0.0267 (7) | 0.0110 (6) | −0.0101 (6) | 0.0033 (5) | −0.0017 (5) |
O6W | 0.0154 (6) | 0.0170 (6) | 0.0155 (7) | −0.0023 (5) | 0.0002 (5) | −0.0024 (5) |
O7W | 0.0160 (6) | 0.0114 (6) | 0.0183 (7) | −0.0004 (5) | −0.0008 (5) | −0.0009 (5) |
O8W | 0.0191 (7) | 0.0159 (6) | 0.0228 (7) | −0.0042 (5) | −0.0005 (6) | −0.0017 (5) |
O9W | 0.0145 (6) | 0.0222 (7) | 0.0173 (7) | 0.0009 (5) | 0.0028 (5) | 0.0011 (5) |
Ni1—N1 | 1.9598 (14) | C4—C5 | 1.391 (2) |
Ni1—N2 | 1.9663 (14) | C4—H4A | 0.9500 |
Ni1—O1 | 2.1275 (12) | C5—C7 | 1.517 (2) |
Ni1—O5 | 2.1319 (12) | C8—C9 | 1.385 (2) |
Ni1—O3 | 2.1338 (12) | C8—C13 | 1.510 (2) |
Ni1—O7 | 2.1357 (13) | C9—C10 | 1.396 (2) |
Ni2—O6 | 2.0407 (12) | C9—H9A | 0.9500 |
Ni2—O2W | 2.0438 (12) | C10—C11 | 1.390 (2) |
Ni2—O1W | 2.0996 (12) | C10—H10A | 0.9500 |
Ni3—O5W | 2.0242 (12) | C11—C12 | 1.388 (2) |
Ni3—O4W | 2.0535 (12) | C11—H11A | 0.9500 |
Ni3—O3W | 2.0879 (12) | C12—C14 | 1.515 (2) |
O1—C6 | 1.273 (2) | O1W—H1 | 0.8500 |
O2—C6 | 1.243 (2) | O1W—H2 | 0.8499 |
O3—C7 | 1.268 (2) | O2W—H3 | 0.8500 |
O4—C7 | 1.244 (2) | O2W—H4 | 0.8499 |
O5—C13 | 1.270 (2) | O3W—H5 | 0.8498 |
O6—C13 | 1.249 (2) | O3W—H6 | 0.8500 |
O7—C14 | 1.270 (2) | O4W—H7 | 0.8500 |
O8—C14 | 1.249 (2) | O4W—H8 | 0.8500 |
N1—C5 | 1.329 (2) | O5W—H9 | 0.8499 |
N1—C1 | 1.335 (2) | O5W—H10 | 0.8500 |
N2—C8 | 1.332 (2) | O6W—H11 | 0.8500 |
N2—C12 | 1.338 (2) | O6W—H12 | 0.8500 |
C1—C2 | 1.385 (2) | O7W—H13 | 0.8499 |
C1—C6 | 1.520 (2) | O7W—H14 | 0.8501 |
C2—C3 | 1.395 (2) | O8W—H15 | 0.8500 |
C2—H2A | 0.9500 | O8W—H16 | 0.8499 |
C3—C4 | 1.393 (2) | O9W—H17 | 0.8501 |
C3—H3A | 0.9500 | O9W—H18 | 0.8500 |
N1—Ni1—N2 | 177.85 (6) | C1—C2—C3 | 117.79 (16) |
N1—Ni1—O1 | 78.28 (5) | C1—C2—H2A | 121.1 |
N2—Ni1—O1 | 100.44 (5) | C3—C2—H2A | 121.1 |
N1—Ni1—O5 | 100.22 (5) | C4—C3—C2 | 120.27 (16) |
N2—Ni1—O5 | 78.19 (5) | C4—C3—H3A | 119.9 |
O1—Ni1—O5 | 98.00 (5) | C2—C3—H3A | 119.9 |
N1—Ni1—O3 | 77.82 (5) | C5—C4—C3 | 118.01 (16) |
N2—Ni1—O3 | 103.41 (5) | C5—C4—H4A | 121.0 |
O1—Ni1—O3 | 156.09 (5) | C3—C4—H4A | 121.0 |
O5—Ni1—O3 | 85.25 (5) | N1—C5—C4 | 121.07 (15) |
N1—Ni1—O7 | 103.64 (5) | N1—C5—C7 | 112.62 (14) |
N2—Ni1—O7 | 77.99 (5) | C4—C5—C7 | 126.30 (15) |
O1—Ni1—O7 | 87.97 (5) | O2—C6—O1 | 126.32 (16) |
O5—Ni1—O7 | 156.12 (5) | O2—C6—C1 | 118.31 (15) |
O3—Ni1—O7 | 98.63 (5) | O1—C6—C1 | 115.37 (15) |
O6—Ni2—O6i | 180.0 | O4—C7—O3 | 126.56 (16) |
O6—Ni2—O2W | 92.53 (5) | O4—C7—C5 | 118.08 (15) |
O6i—Ni2—O2W | 87.47 (5) | O3—C7—C5 | 115.35 (14) |
O6—Ni2—O2Wi | 87.47 (5) | N2—C8—C9 | 121.43 (16) |
O6i—Ni2—O2Wi | 92.53 (5) | N2—C8—C13 | 112.79 (14) |
O2W—Ni2—O2Wi | 180.00 (5) | C9—C8—C13 | 125.77 (16) |
O6—Ni2—O1Wi | 89.92 (5) | C8—C9—C10 | 117.68 (16) |
O6i—Ni2—O1Wi | 90.08 (5) | C8—C9—H9A | 121.2 |
O2W—Ni2—O1Wi | 87.76 (5) | C10—C9—H9A | 121.2 |
O2Wi—Ni2—O1Wi | 92.24 (5) | C11—C10—C9 | 120.33 (16) |
O6—Ni2—O1W | 90.08 (5) | C11—C10—H10A | 119.8 |
O6i—Ni2—O1W | 89.92 (5) | C9—C10—H10A | 119.8 |
O2W—Ni2—O1W | 92.24 (5) | C12—C11—C10 | 118.45 (16) |
O2Wi—Ni2—O1W | 87.76 (5) | C12—C11—H11A | 120.8 |
O1Wi—Ni2—O1W | 180.0 | C10—C11—H11A | 120.8 |
O5W—Ni3—O5Wii | 180.00 (6) | N2—C12—C11 | 120.45 (16) |
O5W—Ni3—O4Wii | 88.05 (5) | N2—C12—C14 | 112.37 (14) |
O5Wii—Ni3—O4Wii | 91.95 (5) | C11—C12—C14 | 127.18 (15) |
O5W—Ni3—O4W | 91.95 (5) | O6—C13—O5 | 126.35 (16) |
O5Wii—Ni3—O4W | 88.05 (5) | O6—C13—C8 | 117.58 (15) |
O4Wii—Ni3—O4W | 180.00 (5) | O5—C13—C8 | 116.05 (15) |
O5W—Ni3—O3W | 90.51 (5) | O8—C14—O7 | 125.70 (16) |
O5Wii—Ni3—O3W | 89.49 (5) | O8—C14—C12 | 118.23 (15) |
O4Wii—Ni3—O3W | 88.78 (5) | O7—C14—C12 | 116.06 (15) |
O4W—Ni3—O3W | 91.22 (5) | Ni2—O1W—H1 | 104.4 |
O5W—Ni3—O3Wii | 89.49 (5) | Ni2—O1W—H2 | 114.8 |
O5Wii—Ni3—O3Wii | 90.51 (5) | H1—O1W—H2 | 100.1 |
O4Wii—Ni3—O3Wii | 91.22 (5) | Ni2—O2W—H3 | 117.9 |
O4W—Ni3—O3Wii | 88.78 (5) | Ni2—O2W—H4 | 114.6 |
O3W—Ni3—O3Wii | 180.0 | H3—O2W—H4 | 102.0 |
C6—O1—Ni1 | 113.90 (11) | Ni3—O3W—H5 | 119.0 |
C7—O3—Ni1 | 114.02 (10) | Ni3—O3W—H6 | 118.1 |
C13—O5—Ni1 | 113.80 (11) | H5—O3W—H6 | 114.8 |
C13—O6—Ni2 | 125.07 (11) | Ni3—O4W—H7 | 117.7 |
C14—O7—Ni1 | 114.14 (11) | Ni3—O4W—H8 | 126.6 |
C5—N1—C1 | 121.44 (15) | H7—O4W—H8 | 98.6 |
C5—N1—Ni1 | 119.45 (11) | Ni3—O5W—H9 | 123.0 |
C1—N1—Ni1 | 119.08 (11) | Ni3—O5W—H10 | 121.7 |
C8—N2—C12 | 121.66 (14) | H9—O5W—H10 | 109.2 |
C8—N2—Ni1 | 118.94 (11) | H11—O6W—H12 | 110.4 |
C12—N2—Ni1 | 119.38 (11) | H13—O7W—H14 | 113.4 |
N1—C1—C2 | 121.41 (16) | H15—O8W—H16 | 101.3 |
N1—C1—C6 | 112.60 (14) | H17—O9W—H18 | 106.2 |
C2—C1—C6 | 125.99 (16) | ||
N1—Ni1—O1—C6 | −7.59 (12) | C2—C3—C4—C5 | −0.4 (3) |
N2—Ni1—O1—C6 | 174.17 (12) | C1—N1—C5—C4 | 0.2 (3) |
O5—Ni1—O1—C6 | −106.44 (12) | Ni1—N1—C5—C4 | 178.12 (13) |
O3—Ni1—O1—C6 | −10.1 (2) | C1—N1—C5—C7 | −179.19 (14) |
O7—Ni1—O1—C6 | 96.78 (12) | Ni1—N1—C5—C7 | −1.30 (19) |
N1—Ni1—O3—C7 | −7.77 (12) | C3—C4—C5—N1 | 0.5 (3) |
N2—Ni1—O3—C7 | 170.42 (12) | C3—C4—C5—C7 | 179.86 (16) |
O1—Ni1—O3—C7 | −5.3 (2) | Ni1—O1—C6—O2 | −170.33 (14) |
O5—Ni1—O3—C7 | 93.77 (12) | Ni1—O1—C6—C1 | 9.82 (19) |
O7—Ni1—O3—C7 | −109.96 (12) | N1—C1—C6—O2 | 173.09 (15) |
N1—Ni1—O5—C13 | 179.05 (11) | C2—C1—C6—O2 | −7.7 (3) |
N2—Ni1—O5—C13 | −2.43 (11) | N1—C1—C6—O1 | −7.0 (2) |
O1—Ni1—O5—C13 | −101.49 (11) | C2—C1—C6—O1 | 172.18 (17) |
O3—Ni1—O5—C13 | 102.36 (11) | Ni1—O3—C7—O4 | −169.34 (14) |
O7—Ni1—O5—C13 | 1.74 (19) | Ni1—O3—C7—C5 | 9.26 (18) |
O2W—Ni2—O6—C13 | −56.66 (13) | N1—C5—C7—O4 | 173.03 (15) |
O2Wi—Ni2—O6—C13 | 123.34 (13) | C4—C5—C7—O4 | −6.4 (3) |
O1Wi—Ni2—O6—C13 | −144.42 (13) | N1—C5—C7—O3 | −5.7 (2) |
O1W—Ni2—O6—C13 | 35.58 (13) | C4—C5—C7—O3 | 174.92 (17) |
N1—Ni1—O7—C14 | 177.23 (11) | C12—N2—C8—C9 | 0.6 (2) |
N2—Ni1—O7—C14 | −1.32 (11) | Ni1—N2—C8—C9 | −178.02 (13) |
O1—Ni1—O7—C14 | 99.80 (12) | C12—N2—C8—C13 | −178.15 (14) |
O5—Ni1—O7—C14 | −5.49 (19) | Ni1—N2—C8—C13 | 3.20 (18) |
O3—Ni1—O7—C14 | −103.30 (11) | N2—C8—C9—C10 | 0.4 (3) |
O1—Ni1—N1—C5 | −174.37 (14) | C13—C8—C9—C10 | 178.99 (16) |
O5—Ni1—N1—C5 | −78.23 (13) | C8—C9—C10—C11 | −1.0 (3) |
O3—Ni1—N1—C5 | 4.59 (12) | C9—C10—C11—C12 | 0.6 (3) |
O7—Ni1—N1—C5 | 100.65 (13) | C8—N2—C12—C11 | −1.0 (2) |
O1—Ni1—N1—C1 | 3.57 (12) | Ni1—N2—C12—C11 | 177.63 (12) |
O5—Ni1—N1—C1 | 99.72 (13) | C8—N2—C12—C14 | 178.50 (14) |
O3—Ni1—N1—C1 | −177.47 (13) | Ni1—N2—C12—C14 | −2.85 (18) |
O7—Ni1—N1—C1 | −81.40 (13) | C10—C11—C12—N2 | 0.4 (3) |
O1—Ni1—N2—C8 | 95.39 (12) | C10—C11—C12—C14 | −179.07 (16) |
O5—Ni1—N2—C8 | −0.69 (12) | Ni2—O6—C13—O5 | 14.8 (2) |
O3—Ni1—N2—C8 | −82.83 (12) | Ni2—O6—C13—C8 | −163.58 (11) |
O7—Ni1—N2—C8 | −178.97 (13) | Ni1—O5—C13—O6 | −173.65 (13) |
O1—Ni1—N2—C12 | −83.29 (13) | Ni1—O5—C13—C8 | 4.74 (18) |
O5—Ni1—N2—C12 | −179.38 (13) | N2—C8—C13—O6 | 173.22 (14) |
O3—Ni1—N2—C12 | 98.49 (13) | C9—C8—C13—O6 | −5.5 (3) |
O7—Ni1—N2—C12 | 2.34 (12) | N2—C8—C13—O5 | −5.3 (2) |
C5—N1—C1—C2 | −1.1 (3) | C9—C8—C13—O5 | 175.96 (16) |
Ni1—N1—C1—C2 | −179.00 (13) | Ni1—O7—C14—O8 | 178.91 (14) |
C5—N1—C1—C6 | 178.18 (15) | Ni1—O7—C14—C12 | 0.24 (18) |
Ni1—N1—C1—C6 | 0.27 (19) | N2—C12—C14—O8 | −177.18 (15) |
N1—C1—C2—C3 | 1.2 (3) | C11—C12—C14—O8 | 2.3 (3) |
C6—C1—C2—C3 | −178.01 (17) | N2—C12—C14—O7 | 1.6 (2) |
C1—C2—C3—C4 | −0.4 (3) | C11—C12—C14—O7 | −178.94 (16) |
Symmetry codes: (i) −x, −y+1, −z+1; (ii) −x+1, −y+1, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1···O5 | 0.85 | 2.12 | 2.852 (2) | 143 |
O1W—H2···O6Wiii | 0.85 | 1.92 | 2.756 (2) | 169 |
O2W—H3···O4iii | 0.85 | 1.95 | 2.787 (2) | 166 |
O2W—H4···O6Wiv | 0.85 | 1.87 | 2.724 (2) | 178 |
O3W—H5···O7 | 0.85 | 2.05 | 2.891 (2) | 173 |
O3W—H6···O9Wiii | 0.85 | 1.94 | 2.789 (2) | 180 |
O4W—H7···O2v | 0.85 | 1.97 | 2.767 (2) | 155 |
O4W—H8···O9W | 0.85 | 1.94 | 2.782 (2) | 175 |
O5W—H9···O8 | 0.85 | 1.84 | 2.690 (2) | 175 |
O5W—H10···O7Wvi | 0.85 | 1.88 | 2.722 (2) | 170 |
O6W—H11···O4 | 0.85 | 1.85 | 2.670 (2) | 162 |
O6W—H12···O8Wvii | 0.85 | 1.93 | 2.777 (2) | 172 |
O7W—H13···O8 | 0.85 | 1.86 | 2.707 (2) | 173 |
O7W—H14···O1vi | 0.85 | 1.94 | 2.760 (2) | 163 |
O8W—H15···O1Wvii | 0.85 | 2.43 | 3.106 (2) | 137 |
O8W—H16···O3 | 0.85 | 1.95 | 2.787 (2) | 166 |
O9W—H17···O7Wii | 0.85 | 1.88 | 2.705 (2) | 164 |
O9W—H18···O2viii | 0.85 | 1.98 | 2.779 (2) | 156 |
C2—H2A···O3Wiii | 0.95 | 2.37 | 3.266 (2) | 157 |
C9—H9A···O8Wix | 0.95 | 2.38 | 3.183 (2) | 143 |
Symmetry codes: (ii) −x+1, −y+1, −z; (iii) x, −y+3/2, z+1/2; (iv) x, y, z+1; (v) x, y, z−1; (vi) x, −y+1/2, z−1/2; (vii) −x, −y+1, −z; (viii) x, −y+3/2, z−1/2; (ix) x, −y+1/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | [Ni(H2O)6][Ni3(C7H3NO4)4(H2O)4]·8H2O |
Mr | 1219.54 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 20.4561 (5), 12.7587 (3), 8.8582 (2) |
β (°) | 96.942 (1) |
V (Å3) | 2294.98 (9) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 1.73 |
Crystal size (mm) | 0.35 × 0.13 × 0.07 |
Data collection | |
Diffractometer | Bruker APEXII CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.760, 0.888 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 27378, 6068, 4899 |
Rint | 0.062 |
(sin θ/λ)max (Å−1) | 0.682 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.027, 0.064, 1.00 |
No. of reflections | 6068 |
No. of parameters | 319 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.83, −0.62 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1W—H1···O5 | 0.85 | 2.124 | 2.852 (2) | 143 |
O1W—H2···O6Wi | 0.85 | 1.918 | 2.756 (2) | 169 |
O2W—H3···O4i | 0.85 | 1.954 | 2.787 (2) | 166 |
O2W—H4···O6Wii | 0.85 | 1.874 | 2.724 (2) | 178 |
O3W—H5···O7 | 0.85 | 2.045 | 2.891 (2) | 173 |
O3W—H6···O9Wi | 0.85 | 1.939 | 2.789 (2) | 180 |
O4W—H7···O2iii | 0.85 | 1.972 | 2.767 (2) | 155 |
O4W—H8···O9W | 0.85 | 1.935 | 2.782 (2) | 175 |
O5W—H9···O8 | 0.85 | 1.842 | 2.690 (2) | 175 |
O5W—H10···O7Wiv | 0.85 | 1.881 | 2.722 (2) | 170 |
O6W—H11···O4 | 0.85 | 1.849 | 2.670 (2) | 162 |
O6W—H12···O8Wv | 0.85 | 1.934 | 2.777 (2) | 172 |
O7W—H13···O8 | 0.85 | 1.862 | 2.707 (2) | 173 |
O7W—H14···O1iv | 0.85 | 1.937 | 2.760 (2) | 163 |
O8W—H15···O1Wv | 0.85 | 2.433 | 3.106 (2) | 137 |
O8W—H16···O3 | 0.85 | 1.954 | 2.787 (2) | 166 |
O9W—H17···O7Wvi | 0.85 | 1.877 | 2.705 (2) | 164 |
O9W—H18···O2vii | 0.85 | 1.980 | 2.779 (2) | 156 |
C2—H2A···O3Wi | 0.95 | 2.370 | 3.266 (2) | 157 |
C9—H9A···O8Wviii | 0.95 | 2.380 | 3.183 (2) | 143 |
Symmetry codes: (i) x, −y+3/2, z+1/2; (ii) x, y, z+1; (iii) x, y, z−1; (iv) x, −y+1/2, z−1/2; (v) −x, −y+1, −z; (vi) −x+1, −y+1, −z; (vii) x, −y+3/2, z−1/2; (viii) x, −y+1/2, z+1/2. |
Acknowledgements
The authors are grateful to Islamic Azad University, Qom Branch, for financial support of this work.
References
Aghabozorg, H., Manteghi, F. & Sheshmani, S. (2008). J. Iran. Chem. Soc. 5, 184–227. CrossRef CAS Google Scholar
Bruker (2005). APEX2, SADABS and SAINT. Bruker AXS Inc., Madison, Wisconsin, USA. Google Scholar
Çolak, A. T., Akduman, D., Yeşilel, O. Z. & Büyükgüngör, O. (2008). Transition Met. Chem. 34 861–868. Google Scholar
Moghimi, A., Sheshmani, S., Shokrollahi, A., Shamsipur, M., Kickelbick, G. & Aghabozorg, H. (2005). Z. Anorg. Allg. Chem. 631 160–169. Web of Science CSD CrossRef CAS Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Pyridinedicarboxylic acid and 1,10-phenanthroline are well known ligands in coordination chemistry (Çolak et al., 2008). In our group, many compounds are synthesized by proton transfer between the two compounds (phenH)2(pydc) (Moghimi et al., 2005). Also, many metallic compounds have been reported (Aghabozorg et al., 2008).
The considerable case in the title compound is that despite of the presence of phen in the preparation solution, only pydc is involved in the complex formation. In the crystal structure, the Ni atom is in three types. In the anionic part, Ni1 is coordinated by two (pydc)2– groups, and Ni2 is coordinated by four water molecules and two uncoordinated O atoms of two (pydc)2– groups linked to Ni1. As shown in Fig.1, this causes that Ni2 makes a bridge between Ni1 and Ni1A. In the cationic part, Ni3 is simply coordinated by six water molecules.
As given in Table 1 and Figs. 2–3, there are nomerous hydrogen bonds of the type O—H···O between water molecules and O atoms of (pydc)2–, and C—H···O between C atoms of pyridine rings and water molecules. Also, C—O···π stackings present in the crystal structure, are as follows: C6—O2···Cg1(N1/C1—C5), 3.570 (1) Å, C14—O8···Cg2 (N2/C8—C12), 3.758 (1) Å, and C7—O4···Cg1(N1/C1—C5), 3.609 (1) Å.