organic compounds
Hydrogen-bonding patterns in pyrimethaminium pyridine-3-sulfonate
aSchool of Chemistry, Bharathidasan University, Tiruchirappalli 620 024, Tamilnadu, India
*Correspondence e-mail: tommtrichy@yahoo.co.in
In the 12H14N4Cl+·C5H4NSO3−, there are two independent pyrimethaminium cations and two 3-pyridine sulfonate anions. Each sulfonate group interacts with the corresponding protonated pyrimidine ring through two N—H⋯O hydrogen bonds, forming a cyclic hydrogen-bonded bimolecular R22(8) motif. Even though the primary mode of association is the same, the next higher level of supramolecular architectures are different due to different hydrogen-bonded networks. In one of the independent molecules in the the pyrimethamine cation is paired centrosymmetrically through N—H⋯N hydrogen bonds, generating an R22(8) ring motif. In the other molecule, the pyrimethamine cation does not form any base pairs; instead it forms hydrogen bonds with the 3-pyridine sulfonate anion. The structure is further stabilized by C—H⋯O, C—H⋯N and π–π stacking [centroid–centroid distance = 3.9465 (13) Å] interactions.
of the title salt [systematic name: 2,4-diamino-5-(4-chlorophenyl)-6-ethylpyrimidin-1-ium pyridine-3-sulfonate], CRelated literature
For background to crystal engineering and supramolecular chemistry, see: Desiraju (1989); Lehn (1995). For structures involving pyrimethamine carboxylates, see: Sethuraman et al. (2003); Stanley et al. (2002). For structures involving sulfonates, see: Hemamalini et al. (2005); Balasubramani et al. (2007); Baskar et al. (2003). For a survey on hydrogen-bonding patterns involving sulfonate salts, see: Haynes et al. (2004). For the crystal structures of pyrimethamine and metoprine, see: Sethuraman & Thomas Muthiah (2002); De et al. (1989). For modeling studies on DHFR–PMN complexes, see: Sansom et al. (1989). For hydrogen-bond motifs, see: Etter (1990); Bernstein et al. (1995).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2008); cell SAINT (Bruker, 2008); data reduction: SAINT; program(s) used to solve structure: SHELXL97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON.
Supporting information
https://doi.org/10.1107/S1600536810029119/is2577sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810029119/is2577Isup2.hkl
To obtain crystals of compound (I) suitable for X-ray study, pyrimethamine (31 mg; Shah Pharma Chemicals, India) was dissolved in hot n-propanol (20 ml) and 3-pyridine sulf77onic acid (20 mg; Merck) was dissolved in hot n-propanol (20 ml). The two solutions were mixed and warmed for 20 minutes over a water bath. The solution was allowed to evaporate slowly. After a few days, colourless crystals were obtained.
All the hydrogen atoms were positioned geometrically and were refined using riding model. The N—H and C—H bond lengths are 0.86 and 0.93 Å, respectively [Uiso(H) = 1.2Ueq(parent atom)].
A variety of strategies have been adopted by solid state chemist to tailor the physiochemical properties of an active pharmaceutical ingredient (API). One such strategy is to prepare salt forms of these API's using the concept of crystal engineering (Desiraju, 1989) and supramolecular chemistry (Lehn, 1995). We have reported from our laboratory, the
of pyrimethamine (PMN), (Sethuraman & Muthiah, 2002) an antifolate drug used in antimalarial chemotherapy and treatment of opportunistic infections in patients with AIDS. Investigations of a fairly large number of crystal structures of pyrimethamine salts involving carboxylates (Sethuraman et al., 2003; Stanley et al., 2002) and a few sulfonates (Hemamalini et al., 2005; Balasubramani et al., 2007) have shown an inclination towards the formation of certain robust motifs and a variety of supramolecular architectures. The CSD survey by Haynes et al. (2004) on the sulfonate salts, revealed various hydrogen bonding patterns and their preferences with specific functional groups.It is therefore of interest, to investigate the packing preferences and supramolecular architectures of the title compound (Scheme 1). The compound crystallizes in the triclinic 1, with two molecules in the (Figure 1). The crystallographically independent pyrimethamine molecules (A and B) are protonated at N1A and N1B positions as is evident from the increase in respective bond angle at C—N—C, when compared to its neutral form (Sethuraman & Thomas Muthiah, 2002). The bond lengths and angles between the two molecules are in good agreement, with those observed in computer modeling studies on dihydrofolate reductase DHFR–PMN complexes (Sansom et al., 1989) and the of metoprine (De et al., 1989).
PEach of the protonated pyrimethaminium (N1A and N1B) cations interacts with two oxygen atoms of the respective sulfonate anion through two N—H···O hydrogen bonds, forming an eight membered ring motif R22(8) (Etter, 1990; Bernstein et al., 1995). It is well known that sulfonates imitate carboxylates in forming such bidentate motifs (Baskar et al., 2003). Despite this analogy, what makes things interesting is the higher level of supramolecular organization assumed by the two independent molecules. The pyrimethaminium cation A is centrosymmetrically paired through N4—H···N3 hydrogen bonds involving the 4-amino group and the N3 atom of the pyrimidine to form the ring motif R22(8). In addition to the
one of the sulfonate oxygen atoms (O2B) bridges the 2-amino and the 4-amino groups on both sides. The combination of such base-pairing patterns and the further bridging of the oxygen atom, leads to the formation of a linear array of four hydrogen bonds. The corresponding graph-set notations are R32(8), R22(8) and R32(8). Occurrence of such an array is a characteristic feature observed in structures reported earlier (Stanley et al., 2002).The pyrimethaminium cation B does not form any base pairs across its inversion related molecule, instead it forms hydrogen bonds with the 3-pyridine sulfonate(A) through N2B—H···O3A, C16A—H···N3B, N4B—H···N17A interactions to form motifs with R22(9) and R22(7) graph set notations (Figure 2). Combination of these motifs leads to the formation of a triplet hydrogen bond array. A previous report from our laboratory on a closely related system, pyrimethaminium benzene sulfonate salt did not yield such an array. This might be due to the absence of acceptor in the benzene ring (Balasubramani et al., 2007).
Other than these strong interactions, the π–π stacking interactions between the PMN (B) molecules, with a centroid-to-centroid distance of 3.9465 (13) Å, an of 3.4332 (8) Å and a centroid offset of 1.946 Å.
is stabilized by C—H···O, C—H···N interactions andFrom this analysis, it is evident that sulfonates, as usual has a penchant for the formation of bidentate motif and the intermolecular interactions involved in this structure paves way to the formation of two different hydrogen bonded arrays. Identification of such patterns will help in design and construction of preferred hydrogen bonding patterns on drug like molecules.
For background to crystal engineering and supramolecular chemistry, see: Desiraju (1989); Lehn (1995). For structures involving pyrimethamine carboxylates, see: Sethuraman et al. (2003); Stanley et al. (2002). For structures involving sulfonates, see: Hemamalini et al. (2005); Balasubramani et al. (2007); Baskar et al. (2003). For a survey on hydrogen-bonding patterns involving sulfonate salts, see: Haynes et al. (2004). For the crystal structures of pyrimethamine and metoprine, see: Sethuraman & Thomas Muthiah (2002); De et al. (1989). For modeling studies on DHFR–PMN complexes, see: Sansom et al. (1989). For hydrogen-bond motifs, see: Etter (1990); Bernstein et al. (1995).
Data collection: APEX2 (Bruker, 2008); cell
SAINT (Bruker, 2008); data reduction: SAINT (Bruker, 2008); program(s) used to solve structure: SHELXL97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: PLATON (Spek, 2009); software used to prepare material for publication: PLATON (Spek, 2009).Fig. 1. An ORTEP view of the asymmetric unit of the compound, showing the atom-labelling scheme. Displacement ellipsoids are drawn at the 30% probability level. H atoms not involved in the hydrogen-bonds have been omitted for clarity. | |
Fig. 2. A packing diagram showing the interactions. H atoms not involved in the hydrogen-bonds have been omitted for clarity. |
C12H14ClN4+·C5H4NO3S− | Z = 4 |
Mr = 407.88 | F(000) = 848 |
Triclinic, P1 | Dx = 1.398 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 10.4525 (17) Å | Cell parameters from 11491 reflections |
b = 12.200 (2) Å | θ = 1.8–31.3° |
c = 16.539 (3) Å | µ = 0.33 mm−1 |
α = 81.130 (9)° | T = 296 K |
β = 83.580 (9)° | Prism, colourless |
γ = 68.649 (8)° | 0.22 × 0.17 × 0.15 mm |
V = 1937.3 (6) Å3 |
Bruker SMART APEXII CCD area-detector diffractometer | 7509 reflections with I > 2σ(I) |
φ and ω scans | Rint = 0.038 |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | θmax = 31.3°, θmin = 1.8° |
Tmin = 0.930, Tmax = 0.952 | h = −15→15 |
38297 measured reflections | k = −17→17 |
11491 independent reflections | l = −23→23 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.142 | H-atom parameters constrained |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0646P)2 + 0.3968P] where P = (Fo2 + 2Fc2)/3 |
11491 reflections | (Δ/σ)max < 0.001 |
489 parameters | Δρmax = 0.36 e Å−3 |
0 restraints | Δρmin = −0.39 e Å−3 |
C12H14ClN4+·C5H4NO3S− | γ = 68.649 (8)° |
Mr = 407.88 | V = 1937.3 (6) Å3 |
Triclinic, P1 | Z = 4 |
a = 10.4525 (17) Å | Mo Kα radiation |
b = 12.200 (2) Å | µ = 0.33 mm−1 |
c = 16.539 (3) Å | T = 296 K |
α = 81.130 (9)° | 0.22 × 0.17 × 0.15 mm |
β = 83.580 (9)° |
Bruker SMART APEXII CCD area-detector diffractometer | 11491 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2008) | 7509 reflections with I > 2σ(I) |
Tmin = 0.930, Tmax = 0.952 | Rint = 0.038 |
38297 measured reflections |
R[F2 > 2σ(F2)] = 0.048 | 0 restraints |
wR(F2) = 0.142 | H-atom parameters constrained |
S = 1.04 | Δρmax = 0.36 e Å−3 |
11491 reflections | Δρmin = −0.39 e Å−3 |
489 parameters |
Geometry. Bond distances, angles etc. have been calculated using the rounded fractional coordinates. All su's are estimated from the variances of the (full) variance-covariance matrix. The cell e.s.d.'s are taken into account in the estimation of distances, angles and torsion angles |
Refinement. Refinement on F2 for ALL reflections except those flagged by the user for potential systematic errors. Weighted R-factors wR and all goodnesses of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The observed criterion of F2 > σ(F2) is used only for calculating -R-factor-obs etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R-factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
Cl1A | 0.05343 (7) | 0.89280 (6) | 0.09532 (3) | 0.0782 (3) | |
N1A | 0.08451 (14) | 0.63858 (13) | 0.58329 (8) | 0.0410 (4) | |
N2A | 0.23893 (15) | 0.51659 (15) | 0.67551 (9) | 0.0482 (5) | |
N3A | 0.31757 (14) | 0.55476 (13) | 0.54244 (8) | 0.0412 (4) | |
N4A | 0.39218 (16) | 0.59433 (17) | 0.41159 (9) | 0.0579 (5) | |
C2A | 0.21517 (16) | 0.56952 (15) | 0.60000 (10) | 0.0381 (5) | |
C4A | 0.28738 (17) | 0.61007 (16) | 0.46654 (10) | 0.0404 (5) | |
C5A | 0.14942 (16) | 0.68001 (15) | 0.44467 (10) | 0.0381 (5) | |
C6A | 0.04881 (16) | 0.69257 (15) | 0.50596 (10) | 0.0384 (5) | |
C7A | −0.10156 (18) | 0.75762 (18) | 0.49834 (12) | 0.0497 (6) | |
C8A | −0.1822 (2) | 0.6740 (2) | 0.51015 (15) | 0.0714 (9) | |
C9A | 0.12152 (17) | 0.73574 (15) | 0.35859 (10) | 0.0394 (5) | |
C10A | 0.0526 (2) | 0.69537 (19) | 0.31033 (12) | 0.0566 (7) | |
C11A | 0.0286 (3) | 0.7442 (2) | 0.22982 (12) | 0.0626 (8) | |
C12A | 0.0762 (2) | 0.83365 (18) | 0.19790 (11) | 0.0491 (6) | |
C13A | 0.1449 (2) | 0.87560 (19) | 0.24377 (13) | 0.0581 (7) | |
C14A | 0.1670 (2) | 0.82680 (18) | 0.32428 (12) | 0.0529 (6) | |
Cl1B | 0.75619 (13) | 0.10989 (8) | 0.46283 (4) | 0.1200 (4) | |
N1B | 0.58495 (16) | 0.29629 (14) | −0.01927 (9) | 0.0464 (5) | |
N2B | 0.63275 (18) | 0.41465 (15) | −0.13246 (9) | 0.0541 (6) | |
N3B | 0.69002 (16) | 0.43241 (14) | −0.00694 (9) | 0.0466 (5) | |
N4B | 0.7508 (2) | 0.44828 (16) | 0.11694 (10) | 0.0606 (6) | |
C2B | 0.63649 (18) | 0.38129 (16) | −0.05257 (11) | 0.0432 (5) | |
C4B | 0.69761 (19) | 0.39431 (17) | 0.07335 (11) | 0.0451 (6) | |
C5B | 0.65112 (19) | 0.29990 (16) | 0.11129 (11) | 0.0445 (6) | |
C6B | 0.59195 (19) | 0.25441 (17) | 0.06234 (11) | 0.0453 (6) | |
C7B | 0.5359 (2) | 0.15697 (19) | 0.08912 (13) | 0.0589 (7) | |
C8B | 0.6301 (3) | 0.0416 (2) | 0.06264 (19) | 0.0887 (11) | |
C9B | 0.6738 (2) | 0.25302 (17) | 0.19933 (11) | 0.0473 (6) | |
C10B | 0.5798 (2) | 0.3005 (2) | 0.26134 (13) | 0.0619 (7) | |
C11B | 0.6061 (3) | 0.2556 (2) | 0.34251 (14) | 0.0724 (9) | |
C12B | 0.7232 (3) | 0.1654 (2) | 0.36127 (13) | 0.0703 (9) | |
C13B | 0.8169 (4) | 0.1170 (3) | 0.30171 (18) | 0.1075 (11) | |
C14B | 0.7925 (3) | 0.1609 (3) | 0.22042 (16) | 0.0897 (10) | |
S1A | 0.12542 (4) | 0.38315 (4) | 0.22968 (3) | 0.0454 (1) | |
O1A | 0.11857 (15) | 0.28908 (13) | 0.29387 (8) | 0.0619 (5) | |
O2A | 0.00169 (14) | 0.48731 (12) | 0.23174 (9) | 0.0592 (5) | |
O3A | 0.24940 (15) | 0.40950 (17) | 0.22690 (9) | 0.0706 (6) | |
N17A | 0.1545 (2) | 0.3676 (2) | −0.00909 (11) | 0.0774 (8) | |
C15A | 0.12956 (18) | 0.32917 (17) | 0.13658 (11) | 0.0440 (5) | |
C16A | 0.1441 (3) | 0.3989 (2) | 0.06510 (12) | 0.0635 (8) | |
C18A | 0.1467 (3) | 0.2638 (3) | −0.01309 (15) | 0.0816 (11) | |
C19A | 0.1299 (4) | 0.1884 (3) | 0.05338 (17) | 0.0943 (13) | |
C20A | 0.1217 (3) | 0.2214 (2) | 0.13088 (15) | 0.0734 (9) | |
S1B | 0.56043 (5) | 0.75098 (4) | 0.20892 (2) | 0.0410 (1) | |
O1B | 0.48714 (17) | 0.81153 (12) | 0.13616 (8) | 0.0612 (5) | |
O2B | 0.50786 (13) | 0.65999 (11) | 0.25133 (7) | 0.0459 (4) | |
O3B | 0.70717 (14) | 0.70587 (14) | 0.19638 (9) | 0.0615 (5) | |
N17B | 0.5612 (3) | 0.9012 (2) | 0.40602 (16) | 0.1179 (12) | |
C15B | 0.52136 (19) | 0.85892 (16) | 0.27683 (11) | 0.0446 (6) | |
C16B | 0.5830 (3) | 0.8278 (2) | 0.34985 (16) | 0.0970 (12) | |
C18B | 0.4734 (3) | 1.0104 (2) | 0.38887 (16) | 0.0842 (10) | |
C19B | 0.4067 (2) | 1.0492 (2) | 0.31906 (15) | 0.0657 (8) | |
C20B | 0.4310 (2) | 0.97223 (18) | 0.26126 (12) | 0.0530 (6) | |
H2A2 | 0.32110 | 0.47210 | 0.68780 | 0.0580* | |
H1A | 0.02160 | 0.64900 | 0.62260 | 0.0490* | |
H2A1 | 0.17220 | 0.52660 | 0.71240 | 0.0580* | |
H4A1 | 0.47390 | 0.55070 | 0.42540 | 0.0690* | |
H4A2 | 0.37880 | 0.62770 | 0.36200 | 0.0690* | |
H7A1 | −0.11660 | 0.80330 | 0.44460 | 0.0600* | |
H7A2 | −0.13550 | 0.81270 | 0.53900 | 0.0600* | |
H8A1 | −0.15070 | 0.62080 | 0.46910 | 0.1070* | |
H8A2 | −0.27830 | 0.71920 | 0.50530 | 0.1070* | |
H8A3 | −0.16840 | 0.62920 | 0.56360 | 0.1070* | |
H10A | 0.02160 | 0.63400 | 0.33240 | 0.0680* | |
H11A | −0.01880 | 0.71700 | 0.19800 | 0.0750* | |
H13A | 0.17640 | 0.93640 | 0.22100 | 0.0700* | |
H14A | 0.21310 | 0.85560 | 0.35590 | 0.0640* | |
H1B | 0.54690 | 0.26800 | −0.05020 | 0.0560* | |
H2B2 | 0.66470 | 0.46880 | −0.15430 | 0.0650* | |
H10B | 0.49840 | 0.36280 | 0.24880 | 0.0740* | |
H2B1 | 0.59830 | 0.38220 | −0.16260 | 0.0650* | |
H11B | 0.54230 | 0.28800 | 0.38420 | 0.0870* | |
H4B1 | 0.77810 | 0.50450 | 0.09330 | 0.0730* | |
H4B2 | 0.75790 | 0.42700 | 0.16880 | 0.0730* | |
H13B | 0.89750 | 0.05440 | 0.31520 | 0.1290* | |
H7B1 | 0.52190 | 0.14810 | 0.14840 | 0.0710* | |
H14B | 0.85740 | 0.12750 | 0.17950 | 0.1080* | |
H7B2 | 0.44730 | 0.17830 | 0.06630 | 0.0710* | |
H8B1 | 0.64770 | 0.05090 | 0.00420 | 0.1330* | |
H8B2 | 0.58780 | −0.01720 | 0.07780 | 0.1330* | |
H8B3 | 0.71520 | 0.01680 | 0.08890 | 0.1330* | |
H16A | 0.14690 | 0.47320 | 0.06920 | 0.0760* | |
H18A | 0.15310 | 0.24020 | −0.06470 | 0.0980* | |
H19A | 0.12390 | 0.11600 | 0.04700 | 0.1130* | |
H20A | 0.11130 | 0.17160 | 0.17760 | 0.0880* | |
H16B | 0.64400 | 0.75050 | 0.36100 | 0.1170* | |
H18B | 0.45670 | 1.06330 | 0.42710 | 0.1010* | |
H19B | 0.34510 | 1.12660 | 0.30990 | 0.0790* | |
H20B | 0.38650 | 0.99720 | 0.21250 | 0.0640* |
U11 | U22 | U33 | U12 | U13 | U23 | |
Cl1A | 0.1046 (5) | 0.0904 (5) | 0.0411 (3) | −0.0428 (4) | −0.0217 (3) | 0.0212 (3) |
N1A | 0.0334 (7) | 0.0503 (8) | 0.0321 (7) | −0.0093 (6) | 0.0018 (5) | −0.0007 (6) |
N2A | 0.0389 (7) | 0.0622 (10) | 0.0339 (7) | −0.0116 (7) | −0.0026 (6) | 0.0072 (7) |
N3A | 0.0345 (7) | 0.0493 (8) | 0.0329 (7) | −0.0096 (6) | −0.0016 (5) | 0.0024 (6) |
N4A | 0.0390 (8) | 0.0808 (12) | 0.0349 (8) | −0.0068 (8) | 0.0020 (6) | 0.0096 (8) |
C2A | 0.0368 (8) | 0.0421 (9) | 0.0325 (8) | −0.0125 (7) | −0.0024 (6) | 0.0005 (6) |
C4A | 0.0388 (8) | 0.0454 (9) | 0.0317 (8) | −0.0112 (7) | −0.0004 (6) | 0.0005 (7) |
C5A | 0.0387 (8) | 0.0395 (9) | 0.0326 (8) | −0.0112 (7) | −0.0036 (6) | 0.0002 (6) |
C6A | 0.0372 (8) | 0.0390 (9) | 0.0349 (8) | −0.0097 (7) | −0.0042 (6) | −0.0001 (7) |
C7A | 0.0383 (9) | 0.0561 (11) | 0.0417 (9) | −0.0043 (8) | −0.0042 (7) | 0.0028 (8) |
C8A | 0.0489 (12) | 0.0947 (18) | 0.0718 (15) | −0.0291 (12) | −0.0169 (10) | 0.0049 (13) |
C9A | 0.0387 (8) | 0.0407 (9) | 0.0328 (8) | −0.0088 (7) | −0.0036 (6) | 0.0010 (7) |
C10A | 0.0869 (15) | 0.0535 (12) | 0.0402 (10) | −0.0398 (11) | −0.0100 (9) | 0.0041 (8) |
C11A | 0.0951 (16) | 0.0649 (13) | 0.0407 (10) | −0.0424 (13) | −0.0203 (10) | 0.0027 (9) |
C12A | 0.0568 (11) | 0.0518 (11) | 0.0333 (9) | −0.0157 (9) | −0.0069 (7) | 0.0051 (7) |
C13A | 0.0658 (12) | 0.0607 (13) | 0.0526 (11) | −0.0347 (11) | −0.0144 (9) | 0.0173 (9) |
C14A | 0.0589 (11) | 0.0599 (12) | 0.0469 (10) | −0.0312 (10) | −0.0171 (8) | 0.0086 (9) |
Cl1B | 0.2271 (11) | 0.0951 (6) | 0.0505 (4) | −0.0703 (7) | −0.0469 (5) | 0.0151 (3) |
N1B | 0.0584 (9) | 0.0509 (9) | 0.0392 (8) | −0.0287 (8) | −0.0065 (6) | −0.0069 (6) |
N2B | 0.0722 (11) | 0.0635 (11) | 0.0385 (8) | −0.0382 (9) | −0.0082 (7) | −0.0021 (7) |
N3B | 0.0583 (9) | 0.0490 (9) | 0.0398 (8) | −0.0270 (8) | −0.0044 (6) | −0.0055 (6) |
N4B | 0.0897 (13) | 0.0692 (11) | 0.0412 (9) | −0.0486 (10) | −0.0092 (8) | −0.0057 (8) |
C2B | 0.0480 (9) | 0.0447 (10) | 0.0385 (9) | −0.0180 (8) | −0.0028 (7) | −0.0058 (7) |
C4B | 0.0516 (10) | 0.0474 (10) | 0.0403 (9) | −0.0213 (8) | −0.0034 (7) | −0.0074 (7) |
C5B | 0.0508 (10) | 0.0473 (10) | 0.0384 (9) | −0.0213 (8) | −0.0009 (7) | −0.0059 (7) |
C6B | 0.0492 (10) | 0.0474 (10) | 0.0419 (9) | −0.0207 (8) | −0.0008 (7) | −0.0057 (7) |
C7B | 0.0745 (14) | 0.0640 (13) | 0.0510 (11) | −0.0421 (12) | −0.0030 (10) | −0.0011 (9) |
C8B | 0.112 (2) | 0.0606 (16) | 0.099 (2) | −0.0420 (16) | 0.0015 (17) | −0.0028 (14) |
C9B | 0.0571 (11) | 0.0493 (10) | 0.0397 (9) | −0.0239 (9) | −0.0046 (8) | −0.0036 (8) |
C10B | 0.0640 (13) | 0.0708 (14) | 0.0458 (11) | −0.0188 (11) | −0.0021 (9) | −0.0054 (10) |
C11B | 0.0957 (18) | 0.0831 (17) | 0.0428 (11) | −0.0387 (15) | 0.0078 (11) | −0.0117 (11) |
C12B | 0.114 (2) | 0.0620 (14) | 0.0438 (11) | −0.0413 (15) | −0.0214 (12) | 0.0047 (10) |
C13B | 0.110 (2) | 0.106 (2) | 0.0650 (18) | 0.0125 (19) | −0.0283 (16) | 0.0023 (16) |
C14B | 0.0827 (18) | 0.096 (2) | 0.0533 (14) | 0.0109 (15) | −0.0057 (12) | −0.0051 (13) |
S1A | 0.0431 (2) | 0.0546 (3) | 0.0372 (2) | −0.0179 (2) | 0.0054 (2) | −0.0056 (2) |
O1A | 0.0667 (9) | 0.0621 (9) | 0.0411 (7) | −0.0117 (7) | 0.0101 (6) | 0.0033 (6) |
O2A | 0.0578 (8) | 0.0481 (8) | 0.0658 (9) | −0.0153 (7) | 0.0151 (7) | −0.0121 (7) |
O3A | 0.0586 (9) | 0.1133 (14) | 0.0532 (9) | −0.0460 (9) | −0.0021 (7) | −0.0110 (8) |
N17A | 0.1227 (18) | 0.0894 (15) | 0.0420 (10) | −0.0650 (14) | 0.0033 (10) | −0.0098 (9) |
C15A | 0.0429 (9) | 0.0496 (10) | 0.0410 (9) | −0.0199 (8) | 0.0066 (7) | −0.0074 (7) |
C16A | 0.0936 (16) | 0.0665 (14) | 0.0436 (11) | −0.0458 (13) | 0.0013 (10) | −0.0062 (9) |
C18A | 0.115 (2) | 0.102 (2) | 0.0560 (14) | −0.0695 (18) | 0.0113 (13) | −0.0265 (13) |
C19A | 0.153 (3) | 0.091 (2) | 0.0725 (17) | −0.082 (2) | 0.0202 (17) | −0.0313 (15) |
C20A | 0.109 (2) | 0.0648 (14) | 0.0579 (13) | −0.0491 (14) | 0.0126 (12) | −0.0085 (11) |
S1B | 0.0532 (3) | 0.0443 (2) | 0.0281 (2) | −0.0208 (2) | −0.0059 (2) | −0.0003 (2) |
O1B | 0.1014 (11) | 0.0536 (8) | 0.0365 (7) | −0.0350 (8) | −0.0274 (7) | 0.0067 (6) |
O2B | 0.0559 (7) | 0.0476 (7) | 0.0366 (6) | −0.0233 (6) | −0.0040 (5) | 0.0009 (5) |
O3B | 0.0549 (8) | 0.0749 (10) | 0.0558 (8) | −0.0262 (8) | 0.0110 (6) | −0.0135 (7) |
N17B | 0.177 (3) | 0.0741 (15) | 0.0801 (16) | 0.0096 (16) | −0.0707 (17) | −0.0327 (13) |
C15B | 0.0531 (10) | 0.0440 (10) | 0.0369 (9) | −0.0155 (8) | −0.0119 (7) | −0.0030 (7) |
C16B | 0.138 (3) | 0.0592 (15) | 0.0711 (16) | 0.0149 (15) | −0.0631 (17) | −0.0243 (12) |
C18B | 0.123 (2) | 0.0581 (15) | 0.0658 (16) | −0.0144 (15) | −0.0211 (15) | −0.0235 (12) |
C19B | 0.0717 (14) | 0.0449 (11) | 0.0721 (15) | −0.0082 (10) | −0.0084 (11) | −0.0109 (10) |
C20B | 0.0568 (11) | 0.0505 (11) | 0.0500 (11) | −0.0169 (9) | −0.0138 (9) | 0.0014 (9) |
Cl1A—C12A | 1.7445 (19) | C13A—C14A | 1.380 (3) |
Cl1B—C12B | 1.734 (2) | C7A—H7A1 | 0.9700 |
S1A—O2A | 1.4475 (15) | C7A—H7A2 | 0.9700 |
S1A—O3A | 1.4389 (18) | C8A—H8A3 | 0.9600 |
S1A—C15A | 1.7560 (19) | C8A—H8A2 | 0.9600 |
S1A—O1A | 1.4548 (15) | C8A—H8A1 | 0.9600 |
S1B—O1B | 1.4494 (15) | C10A—H10A | 0.9300 |
S1B—O2B | 1.4643 (14) | C11A—H11A | 0.9300 |
S1B—C15B | 1.7676 (19) | C13A—H13A | 0.9300 |
S1B—O3B | 1.4310 (17) | C14A—H14A | 0.9300 |
N1A—C6A | 1.370 (2) | C4B—C5B | 1.440 (3) |
N1A—C2A | 1.351 (2) | C5B—C9B | 1.492 (3) |
N2A—C2A | 1.320 (2) | C5B—C6B | 1.359 (3) |
N3A—C4A | 1.343 (2) | C6B—C7B | 1.496 (3) |
N3A—C2A | 1.330 (2) | C7B—C8B | 1.492 (3) |
N4A—C4A | 1.319 (2) | C9B—C10B | 1.377 (3) |
N1A—H1A | 0.8600 | C9B—C14B | 1.373 (4) |
N2A—H2A1 | 0.8600 | C10B—C11B | 1.387 (3) |
N2A—H2A2 | 0.8600 | C11B—C12B | 1.343 (4) |
N4A—H4A1 | 0.8600 | C12B—C13B | 1.349 (4) |
N4A—H4A2 | 0.8600 | C13B—C14B | 1.384 (4) |
N1B—C6B | 1.368 (2) | C7B—H7B2 | 0.9700 |
N1B—C2B | 1.354 (3) | C7B—H7B1 | 0.9700 |
N2B—C2B | 1.322 (2) | C8B—H8B1 | 0.9600 |
N3B—C4B | 1.339 (2) | C8B—H8B3 | 0.9600 |
N3B—C2B | 1.329 (3) | C8B—H8B2 | 0.9600 |
N4B—C4B | 1.329 (3) | C10B—H10B | 0.9300 |
N1B—H1B | 0.8600 | C11B—H11B | 0.9300 |
N2B—H2B1 | 0.8600 | C13B—H13B | 0.9300 |
N2B—H2B2 | 0.8600 | C14B—H14B | 0.9300 |
N4B—H4B2 | 0.8600 | C15A—C16A | 1.374 (3) |
N4B—H4B1 | 0.8600 | C15A—C20A | 1.365 (3) |
N17A—C16A | 1.322 (3) | C18A—C19A | 1.360 (4) |
N17A—C18A | 1.310 (4) | C19A—C20A | 1.386 (4) |
N17B—C18B | 1.323 (3) | C16A—H16A | 0.9300 |
N17B—C16B | 1.333 (4) | C18A—H18A | 0.9300 |
C4A—C5A | 1.437 (3) | C19A—H19A | 0.9300 |
C5A—C9A | 1.491 (2) | C20A—H20A | 0.9300 |
C5A—C6A | 1.360 (2) | C15B—C16B | 1.368 (3) |
C6A—C7A | 1.490 (3) | C15B—C20B | 1.365 (3) |
C7A—C8A | 1.522 (3) | C18B—C19B | 1.347 (4) |
C9A—C14A | 1.383 (3) | C19B—C20B | 1.382 (3) |
C9A—C10A | 1.381 (3) | C16B—H16B | 0.9300 |
C10A—C11A | 1.383 (3) | C18B—H18B | 0.9300 |
C11A—C12A | 1.370 (3) | C19B—H19B | 0.9300 |
C12A—C13A | 1.365 (3) | C20B—H20B | 0.9300 |
Cl1B···C4Ai | 3.636 (2) | N3B···C16Aiv | 3.128 (3) |
Cl1B···C5Ai | 3.643 (2) | N4A···O2B | 2.909 (2) |
Cl1A···H19Aii | 3.0400 | N4A···C14A | 3.210 (3) |
S1A···H2A1iii | 3.0000 | N4A···N3Ai | 3.027 (2) |
S1A···H1Aiii | 2.7900 | N4B···N17Aiv | 3.033 (3) |
S1B···H1Biv | 3.0400 | N17A···N4Biv | 3.033 (3) |
S1B···H2A2i | 2.9100 | N1A···H8A3 | 2.7400 |
S1B···H2B1iv | 2.9300 | N1B···H8B1 | 2.8000 |
O1A···C19Bv | 3.361 (3) | N2A···H4B2i | 2.7700 |
O1A···N1Aiii | 2.764 (2) | N3A···H4A1i | 2.1700 |
O1A···C7Aiii | 3.391 (2) | N3B···H16Aiv | 2.4400 |
O1B···N1Biv | 2.805 (2) | N17A···H4B1iv | 2.1900 |
O2A···N2Aiii | 2.808 (2) | N17B···H18Bvii | 2.8300 |
O2A···C11A | 3.242 (3) | N17B···H8A2vi | 2.6900 |
O2A···C10A | 3.251 (3) | C2A···C11Bi | 3.588 (3) |
O2B···N2Biv | 3.005 (2) | C2B···C4Biv | 3.581 (3) |
O2B···N2Ai | 2.978 (2) | C4A···Cl1Bi | 3.636 (2) |
O2B···N4A | 2.909 (2) | C4B···C2Biv | 3.581 (3) |
O3A···C10B | 3.299 (3) | C5A···Cl1Bi | 3.643 (2) |
O3A···N2Biv | 3.003 (3) | C7A···O1Aiii | 3.391 (2) |
O3B···N2Ai | 3.091 (2) | C7A···C10A | 3.400 (3) |
O3B···C18Aiv | 3.270 (3) | C10A···C7A | 3.400 (3) |
O1A···H1Aiii | 1.9200 | C10A···O2A | 3.251 (3) |
O1A···H20A | 2.5900 | C10B···O3A | 3.299 (3) |
O1A···H19Bv | 2.4800 | C11A···O2A | 3.242 (3) |
O1A···H8A3iii | 2.8600 | C11B···C2Ai | 3.588 (3) |
O1A···H7A2iii | 2.8500 | C14A···N4A | 3.210 (3) |
O1B···H8B1iv | 2.8300 | C16A···N3Biv | 3.128 (3) |
O1B···H20B | 2.5800 | C18A···O3Biv | 3.270 (3) |
O1B···H1Biv | 1.9700 | C19B···O1Aii | 3.361 (3) |
O1B···H8B2ii | 2.6800 | C8A···H1A | 2.8900 |
O1B···H2B1iv | 2.7800 | C8B···H1B | 2.9800 |
O2A···H10A | 2.7000 | C9A···H7A1 | 2.6400 |
O2A···H11A | 2.7100 | C9A···H4A2 | 2.5300 |
O2A···H2A1iii | 2.0000 | C9B···H4B2 | 2.5400 |
O2A···H1Aiii | 2.7500 | C9B···H7B1 | 2.6400 |
O2B···H2A2i | 2.1500 | C10A···H7A1 | 2.8500 |
O2B···H2B1iv | 2.1600 | C10B···H4B2 | 2.9900 |
O2B···H4A2 | 2.2200 | C13A···H13Bviii | 2.9700 |
O3A···H10B | 2.5100 | C14A···H4A2 | 2.6700 |
O3A···H16A | 2.8200 | C16A···H4B1iv | 2.8600 |
O3A···H2B2iv | 2.1500 | C16B···H8A2vi | 2.9800 |
O3B···H2A1i | 2.9000 | C20B···H7B1ii | 2.9700 |
O3B···H2A2i | 2.7400 | H1A···H8A3 | 2.4100 |
O3B···H16B | 2.8200 | H1A···H2A1 | 2.2500 |
O3B···H11Avi | 2.9200 | H1A···H7A2 | 2.4200 |
O3B···H18Aiv | 2.6200 | H1B···H2B1 | 2.2800 |
N1A···O1Aiii | 2.764 (2) | H1B···H7B2 | 2.3900 |
N1B···O1Biv | 2.805 (2) | H1B···H8B1 | 2.5300 |
N2A···O2Aiii | 2.808 (2) | H2A1···H4B2i | 2.3800 |
N2A···O3Bi | 3.091 (2) | H2A1···H1A | 2.2500 |
N2A···O2Bi | 2.978 (2) | H7A2···H1A | 2.4200 |
N2B···O3Aiv | 3.003 (3) | H8A2···H16Bix | 2.5400 |
N2B···O2Biv | 3.005 (2) | H2B2···H10Biv | 2.5700 |
N3A···N4Ai | 3.027 (2) | H13A···H20B | 2.5500 |
O3A—S1A—C15A | 105.74 (10) | C13A—C14A—H14A | 120.00 |
O1A—S1A—O3A | 113.82 (10) | C9A—C14A—H14A | 120.00 |
O1A—S1A—C15A | 105.92 (9) | N1B—C2B—N2B | 119.11 (18) |
O1A—S1A—O2A | 111.57 (9) | N2B—C2B—N3B | 119.20 (18) |
O2A—S1A—C15A | 105.93 (9) | N1B—C2B—N3B | 121.68 (16) |
O2A—S1A—O3A | 113.08 (10) | N3B—C4B—N4B | 116.46 (18) |
O2B—S1B—O3B | 111.80 (9) | N3B—C4B—C5B | 122.36 (18) |
O1B—S1B—C15B | 105.88 (9) | N4B—C4B—C5B | 121.18 (17) |
O1B—S1B—O3B | 114.99 (9) | C6B—C5B—C9B | 122.95 (18) |
O2B—S1B—C15B | 105.67 (8) | C4B—C5B—C9B | 120.27 (17) |
O3B—S1B—C15B | 106.12 (10) | C4B—C5B—C6B | 116.73 (17) |
O1B—S1B—O2B | 111.61 (9) | C5B—C6B—C7B | 125.56 (17) |
C2A—N1A—C6A | 122.28 (15) | N1B—C6B—C7B | 115.24 (17) |
C2A—N3A—C4A | 118.01 (16) | N1B—C6B—C5B | 119.17 (18) |
C6A—N1A—H1A | 119.00 | C6B—C7B—C8B | 112.0 (2) |
C2A—N1A—H1A | 119.00 | C5B—C9B—C10B | 122.07 (19) |
H2A2—N2A—H2A1 | 120.00 | C10B—C9B—C14B | 118.13 (19) |
C2A—N2A—H2A1 | 120.00 | C5B—C9B—C14B | 119.80 (19) |
C2A—N2A—H2A2 | 120.00 | C9B—C10B—C11B | 120.2 (2) |
C4A—N4A—H4A2 | 120.00 | C10B—C11B—C12B | 120.3 (2) |
H4A1—N4A—H4A2 | 120.00 | C11B—C12B—C13B | 120.7 (2) |
C4A—N4A—H4A1 | 120.00 | Cl1B—C12B—C11B | 120.23 (19) |
C2B—N1B—C6B | 121.60 (17) | Cl1B—C12B—C13B | 119.1 (2) |
C2B—N3B—C4B | 118.31 (17) | C12B—C13B—C14B | 119.7 (3) |
C6B—N1B—H1B | 119.00 | C9B—C14B—C13B | 120.9 (3) |
C2B—N1B—H1B | 119.00 | C8B—C7B—H7B2 | 109.00 |
C2B—N2B—H2B1 | 120.00 | C8B—C7B—H7B1 | 109.00 |
H2B2—N2B—H2B1 | 120.00 | C6B—C7B—H7B2 | 109.00 |
C2B—N2B—H2B2 | 120.00 | C6B—C7B—H7B1 | 109.00 |
H4B1—N4B—H4B2 | 120.00 | H7B1—C7B—H7B2 | 108.00 |
C4B—N4B—H4B1 | 120.00 | H8B1—C8B—H8B3 | 110.00 |
C4B—N4B—H4B2 | 120.00 | C7B—C8B—H8B1 | 109.00 |
C16A—N17A—C18A | 116.4 (2) | C7B—C8B—H8B2 | 109.00 |
C16B—N17B—C18B | 116.7 (3) | C7B—C8B—H8B3 | 109.00 |
N1A—C2A—N3A | 121.39 (15) | H8B1—C8B—H8B2 | 109.00 |
N1A—C2A—N2A | 118.09 (16) | H8B2—C8B—H8B3 | 109.00 |
N2A—C2A—N3A | 120.52 (16) | C9B—C10B—H10B | 120.00 |
N3A—C4A—N4A | 116.04 (17) | C11B—C10B—H10B | 120.00 |
N4A—C4A—C5A | 121.14 (16) | C12B—C11B—H11B | 120.00 |
N3A—C4A—C5A | 122.80 (16) | C10B—C11B—H11B | 120.00 |
C4A—C5A—C9A | 120.40 (15) | C12B—C13B—H13B | 120.00 |
C4A—C5A—C6A | 116.69 (15) | C14B—C13B—H13B | 120.00 |
C6A—C5A—C9A | 122.91 (16) | C13B—C14B—H14B | 120.00 |
N1A—C6A—C7A | 114.49 (15) | C9B—C14B—H14B | 120.00 |
C5A—C6A—C7A | 126.76 (16) | C16A—C15A—C20A | 118.02 (19) |
N1A—C6A—C5A | 118.72 (16) | S1A—C15A—C16A | 117.92 (16) |
C6A—C7A—C8A | 112.06 (17) | S1A—C15A—C20A | 124.05 (16) |
C5A—C9A—C10A | 120.68 (16) | N17A—C16A—C15A | 124.5 (2) |
C10A—C9A—C14A | 118.25 (17) | N17A—C18A—C19A | 124.2 (3) |
C5A—C9A—C14A | 121.05 (17) | C18A—C19A—C20A | 118.8 (3) |
C9A—C10A—C11A | 121.5 (2) | C15A—C20A—C19A | 118.1 (2) |
C10A—C11A—C12A | 118.5 (2) | N17A—C16A—H16A | 118.00 |
Cl1A—C12A—C11A | 119.49 (17) | C15A—C16A—H16A | 118.00 |
Cl1A—C12A—C13A | 118.89 (16) | N17A—C18A—H18A | 118.00 |
C11A—C12A—C13A | 121.59 (19) | C19A—C18A—H18A | 118.00 |
C12A—C13A—C14A | 119.3 (2) | C18A—C19A—H19A | 121.00 |
C9A—C14A—C13A | 120.91 (19) | C20A—C19A—H19A | 121.00 |
C8A—C7A—H7A2 | 109.00 | C15A—C20A—H20A | 121.00 |
C6A—C7A—H7A2 | 109.00 | C19A—C20A—H20A | 121.00 |
C8A—C7A—H7A1 | 109.00 | S1B—C15B—C16B | 118.77 (16) |
C6A—C7A—H7A1 | 109.00 | S1B—C15B—C20B | 123.70 (15) |
H7A1—C7A—H7A2 | 108.00 | C16B—C15B—C20B | 117.52 (18) |
C7A—C8A—H8A3 | 109.00 | N17B—C16B—C15B | 124.2 (2) |
H8A1—C8A—H8A3 | 109.00 | N17B—C18B—C19B | 123.5 (2) |
C7A—C8A—H8A2 | 109.00 | C18B—C19B—C20B | 119.0 (2) |
H8A1—C8A—H8A2 | 109.00 | C15B—C20B—C19B | 118.99 (19) |
C7A—C8A—H8A1 | 109.00 | N17B—C16B—H16B | 118.00 |
H8A2—C8A—H8A3 | 109.00 | C15B—C16B—H16B | 118.00 |
C9A—C10A—H10A | 119.00 | N17B—C18B—H18B | 118.00 |
C11A—C10A—H10A | 119.00 | C19B—C18B—H18B | 118.00 |
C10A—C11A—H11A | 121.00 | C18B—C19B—H19B | 121.00 |
C12A—C11A—H11A | 121.00 | C20B—C19B—H19B | 120.00 |
C12A—C13A—H13A | 120.00 | C15B—C20B—H20B | 120.00 |
C14A—C13A—H13A | 120.00 | C19B—C20B—H20B | 121.00 |
O2A—S1A—C15A—C16A | 65.0 (2) | C5A—C9A—C10A—C11A | −178.5 (2) |
O1A—S1A—C15A—C16A | −176.4 (2) | C10A—C9A—C14A—C13A | −0.4 (3) |
O1A—S1A—C15A—C20A | 2.4 (2) | C14A—C9A—C10A—C11A | −0.2 (3) |
O3A—S1A—C15A—C20A | 123.5 (2) | C5A—C9A—C14A—C13A | 177.88 (19) |
O2A—S1A—C15A—C20A | −116.2 (2) | C9A—C10A—C11A—C12A | 0.7 (4) |
O3A—S1A—C15A—C16A | −55.3 (2) | C10A—C11A—C12A—C13A | −0.6 (4) |
O1B—S1B—C15B—C16B | −176.6 (2) | C10A—C11A—C12A—Cl1A | 177.44 (18) |
O2B—S1B—C15B—C16B | 64.8 (2) | Cl1A—C12A—C13A—C14A | −178.06 (17) |
O2B—S1B—C15B—C20B | −114.20 (19) | C11A—C12A—C13A—C14A | 0.0 (3) |
O1B—S1B—C15B—C20B | 4.3 (2) | C12A—C13A—C14A—C9A | 0.5 (3) |
O3B—S1B—C15B—C20B | 126.96 (19) | N3B—C4B—C5B—C6B | −3.3 (3) |
O3B—S1B—C15B—C16B | −54.0 (2) | N4B—C4B—C5B—C9B | −5.7 (3) |
C6A—N1A—C2A—N2A | −176.88 (16) | N4B—C4B—C5B—C6B | 176.8 (2) |
C2A—N1A—C6A—C7A | 175.61 (16) | N3B—C4B—C5B—C9B | 174.24 (19) |
C2A—N1A—C6A—C5A | −2.7 (3) | C9B—C5B—C6B—N1B | −174.81 (18) |
C6A—N1A—C2A—N3A | 3.1 (3) | C4B—C5B—C6B—N1B | 2.6 (3) |
C2A—N3A—C4A—N4A | 179.13 (17) | C4B—C5B—C6B—C7B | −179.57 (19) |
C2A—N3A—C4A—C5A | −2.5 (3) | C9B—C5B—C6B—C7B | 3.0 (3) |
C4A—N3A—C2A—N1A | −0.4 (3) | C6B—C5B—C9B—C10B | −93.4 (3) |
C4A—N3A—C2A—N2A | 179.56 (17) | C4B—C5B—C9B—C10B | 89.3 (3) |
C2B—N1B—C6B—C7B | −177.49 (18) | C4B—C5B—C9B—C14B | −89.7 (3) |
C6B—N1B—C2B—N2B | 176.88 (18) | C6B—C5B—C9B—C14B | 87.7 (3) |
C6B—N1B—C2B—N3B | −3.5 (3) | C5B—C6B—C7B—C8B | −103.5 (3) |
C2B—N1B—C6B—C5B | 0.5 (3) | N1B—C6B—C7B—C8B | 74.4 (3) |
C4B—N3B—C2B—N2B | −177.53 (19) | C10B—C9B—C14B—C13B | 0.0 (4) |
C2B—N3B—C4B—N4B | −179.51 (19) | C5B—C9B—C14B—C13B | 179.0 (3) |
C2B—N3B—C4B—C5B | 0.5 (3) | C5B—C9B—C10B—C11B | −178.8 (2) |
C4B—N3B—C2B—N1B | 2.8 (3) | C14B—C9B—C10B—C11B | 0.1 (4) |
C16A—N17A—C18A—C19A | −0.5 (5) | C9B—C10B—C11B—C12B | −0.1 (4) |
C18A—N17A—C16A—C15A | 1.8 (4) | C10B—C11B—C12B—Cl1B | 179.7 (2) |
C16B—N17B—C18B—C19B | 0.2 (5) | C10B—C11B—C12B—C13B | −0.1 (5) |
C18B—N17B—C16B—C15B | 0.4 (5) | C11B—C12B—C13B—C14B | 0.2 (5) |
N3A—C4A—C5A—C6A | 2.8 (3) | Cl1B—C12B—C13B—C14B | −179.5 (3) |
N3A—C4A—C5A—C9A | −177.73 (16) | C12B—C13B—C14B—C9B | −0.2 (5) |
N4A—C4A—C5A—C9A | 0.6 (3) | C20A—C15A—C16A—N17A | −1.8 (4) |
N4A—C4A—C5A—C6A | −178.94 (18) | S1A—C15A—C20A—C19A | −178.3 (3) |
C4A—C5A—C6A—C7A | −178.24 (17) | S1A—C15A—C16A—N17A | 177.1 (2) |
C4A—C5A—C9A—C10A | 110.3 (2) | C16A—C15A—C20A—C19A | 0.5 (4) |
C9A—C5A—C6A—N1A | −179.61 (16) | N17A—C18A—C19A—C20A | −0.7 (6) |
C4A—C5A—C6A—N1A | −0.1 (2) | C18A—C19A—C20A—C15A | 0.7 (5) |
C9A—C5A—C6A—C7A | 2.3 (3) | S1B—C15B—C16B—N17B | −179.7 (2) |
C6A—C5A—C9A—C10A | −70.2 (2) | C20B—C15B—C16B—N17B | −0.6 (4) |
C6A—C5A—C9A—C14A | 111.5 (2) | S1B—C15B—C20B—C19B | 179.24 (17) |
C4A—C5A—C9A—C14A | −68.0 (2) | C16B—C15B—C20B—C19B | 0.2 (3) |
N1A—C6A—C7A—C8A | −67.9 (2) | N17B—C18B—C19B—C20B | −0.6 (4) |
C5A—C6A—C7A—C8A | 110.3 (2) | C18B—C19B—C20B—C15B | 0.4 (3) |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x, y+1, z; (iii) −x, −y+1, −z+1; (iv) −x+1, −y+1, −z; (v) x, y−1, z; (vi) x+1, y, z; (vii) −x+1, −y+2, −z+1; (viii) x−1, y+1, z; (ix) x−1, y, z. |
D—H···A | D—H | H···A | D···A | D—H···A |
N2A—H2A2···O2Bi | 0.86 | 2.15 | 2.978 (2) | 162 |
N1A—H1A···O1Aiii | 0.86 | 1.92 | 2.764 (2) | 166 |
N1B—H1B···O1Biv | 0.86 | 1.97 | 2.805 (2) | 164 |
N2A—H2A1···O2Aiii | 0.86 | 2.00 | 2.808 (2) | 157 |
N4A—H4A1···N3Ai | 0.86 | 2.17 | 3.027 (2) | 178 |
N4A—H4A2···O2B | 0.86 | 2.22 | 2.909 (2) | 137 |
N2B—H2B2···O3Aiv | 0.86 | 2.15 | 3.003 (3) | 171 |
N2B—H2B1···O2Biv | 0.86 | 2.16 | 3.005 (2) | 167 |
N4B—H4B1···N17Aiv | 0.86 | 2.19 | 3.033 (3) | 168 |
C10B—H10B···O3A | 0.93 | 2.51 | 3.299 (3) | 143 |
C16A—H16A···N3Biv | 0.93 | 2.44 | 3.128 (3) | 131 |
C19B—H19B···O1Aii | 0.93 | 2.48 | 3.361 (3) | 157 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) x, y+1, z; (iii) −x, −y+1, −z+1; (iv) −x+1, −y+1, −z. |
Experimental details
Crystal data | |
Chemical formula | C12H14ClN4+·C5H4NO3S− |
Mr | 407.88 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 296 |
a, b, c (Å) | 10.4525 (17), 12.200 (2), 16.539 (3) |
α, β, γ (°) | 81.130 (9), 83.580 (9), 68.649 (8) |
V (Å3) | 1937.3 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.33 |
Crystal size (mm) | 0.22 × 0.17 × 0.15 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2008) |
Tmin, Tmax | 0.930, 0.952 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 38297, 11491, 7509 |
Rint | 0.038 |
(sin θ/λ)max (Å−1) | 0.731 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.142, 1.04 |
No. of reflections | 11491 |
No. of parameters | 489 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.36, −0.39 |
Computer programs: APEX2 (Bruker, 2008), SAINT (Bruker, 2008), SHELXL97 (Sheldrick, 2008), PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2A—H2A2···O2Bi | 0.86 | 2.15 | 2.978 (2) | 162 |
N1A—H1A···O1Aii | 0.86 | 1.92 | 2.764 (2) | 166 |
N1B—H1B···O1Biii | 0.86 | 1.97 | 2.805 (2) | 164 |
N2A—H2A1···O2Aii | 0.86 | 2.00 | 2.808 (2) | 157 |
N4A—H4A1···N3Ai | 0.86 | 2.17 | 3.027 (2) | 178 |
N4A—H4A2···O2B | 0.86 | 2.22 | 2.909 (2) | 137 |
N2B—H2B2···O3Aiii | 0.86 | 2.15 | 3.003 (3) | 171 |
N2B—H2B1···O2Biii | 0.86 | 2.16 | 3.005 (2) | 167 |
N4B—H4B1···N17Aiii | 0.86 | 2.19 | 3.033 (3) | 168 |
C10B—H10B···O3A | 0.93 | 2.51 | 3.299 (3) | 143 |
C16A—H16A···N3Biii | 0.93 | 2.44 | 3.128 (3) | 131 |
C19B—H19B···O1Aiv | 0.93 | 2.48 | 3.361 (3) | 157 |
Symmetry codes: (i) −x+1, −y+1, −z+1; (ii) −x, −y+1, −z+1; (iii) −x+1, −y+1, −z; (iv) x, y+1, z. |
Acknowledgements
JSN thanks the UGC– SAP, India, for the award of an RFSMS. The authors thank the DST India (FIST programme) for the use of the diffractometer at the School of Chemistry, Bharathidasan University, Tiruchirappalli, Tamilnadu, India
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
A variety of strategies have been adopted by solid state chemist to tailor the physiochemical properties of an active pharmaceutical ingredient (API). One such strategy is to prepare salt forms of these API's using the concept of crystal engineering (Desiraju, 1989) and supramolecular chemistry (Lehn, 1995). We have reported from our laboratory, the crystal structure of pyrimethamine (PMN), (Sethuraman & Muthiah, 2002) an antifolate drug used in antimalarial chemotherapy and treatment of opportunistic infections in patients with AIDS. Investigations of a fairly large number of crystal structures of pyrimethamine salts involving carboxylates (Sethuraman et al., 2003; Stanley et al., 2002) and a few sulfonates (Hemamalini et al., 2005; Balasubramani et al., 2007) have shown an inclination towards the formation of certain robust motifs and a variety of supramolecular architectures. The CSD survey by Haynes et al. (2004) on the sulfonate salts, revealed various hydrogen bonding patterns and their preferences with specific functional groups.
It is therefore of interest, to investigate the packing preferences and supramolecular architectures of the title compound (Scheme 1). The compound crystallizes in the triclinic space group P1, with two molecules in the asymmetric unit (Figure 1). The crystallographically independent pyrimethamine molecules (A and B) are protonated at N1A and N1B positions as is evident from the increase in respective bond angle at C—N—C, when compared to its neutral form (Sethuraman & Thomas Muthiah, 2002). The bond lengths and angles between the two molecules are in good agreement, with those observed in computer modeling studies on dihydrofolate reductase DHFR–PMN complexes (Sansom et al., 1989) and the crystal structure of metoprine (De et al., 1989).
Each of the protonated pyrimethaminium (N1A and N1B) cations interacts with two oxygen atoms of the respective sulfonate anion through two N—H···O hydrogen bonds, forming an eight membered ring motif R22(8) (Etter, 1990; Bernstein et al., 1995). It is well known that sulfonates imitate carboxylates in forming such bidentate motifs (Baskar et al., 2003). Despite this analogy, what makes things interesting is the higher level of supramolecular organization assumed by the two independent molecules. The pyrimethaminium cation A is centrosymmetrically paired through N4—H···N3 hydrogen bonds involving the 4-amino group and the N3 atom of the pyrimidine to form the ring motif R22(8). In addition to the base pairing, one of the sulfonate oxygen atoms (O2B) bridges the 2-amino and the 4-amino groups on both sides. The combination of such base-pairing patterns and the further bridging of the oxygen atom, leads to the formation of a linear array of four hydrogen bonds. The corresponding graph-set notations are R32(8), R22(8) and R32(8). Occurrence of such an array is a characteristic feature observed in structures reported earlier (Stanley et al., 2002).
The pyrimethaminium cation B does not form any base pairs across its inversion related molecule, instead it forms hydrogen bonds with the 3-pyridine sulfonate(A) through N2B—H···O3A, C16A—H···N3B, N4B—H···N17A interactions to form motifs with R22(9) and R22(7) graph set notations (Figure 2). Combination of these motifs leads to the formation of a triplet hydrogen bond array. A previous report from our laboratory on a closely related system, pyrimethaminium benzene sulfonate salt did not yield such an array. This might be due to the absence of acceptor in the benzene ring (Balasubramani et al., 2007).
Other than these strong interactions, the crystal structure is stabilized by C—H···O, C—H···N interactions and π–π stacking interactions between the PMN (B) molecules, with a centroid-to-centroid distance of 3.9465 (13) Å, an interplanar spacing of 3.4332 (8) Å and a centroid offset of 1.946 Å.
From this analysis, it is evident that sulfonates, as usual has a penchant for the formation of bidentate motif and the intermolecular interactions involved in this structure paves way to the formation of two different hydrogen bonded arrays. Identification of such patterns will help in design and construction of preferred hydrogen bonding patterns on drug like molecules.