organic compounds
Bis{(E)-N′-[2,4-bis(trifluoromethyl)benzylidene]isonicotinohydrazide} monohydrate
aSchool of Pharmaceutical Sciences, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
The 15H9F6N3O·H2O, contains two independent Schiff base molecules and one water molecule. Both Schiff base molecules exist in an E configuration with respect to the C=N double bonds and the dihedral angles between the benzene and the pyridine rings in the two molecules are 17.53 (12) and 20.62 (12)°. In the molecules are linked by intermolecular N—H⋯O and C—H⋯O hydrogen bonds into infinite one-dimensional chains along the a axis. In addition, intermolecular O—H⋯N, O—H⋯F, C—H⋯F and C—H⋯O hydrogen bonds further link these chains into a three-dimensional network. Weak π–π interactions with centroid–centroid distances in the range 3.6495 (17)–3.7092 (16) Å are also observed.
of the title compound, 2CRelated literature
For applications of isoniazid derivatives, see: Janin (2007); Maccari et al. (2005); Slayden & Barry (2000); Kahwa et al. (1986). For the preparation of the title compound, see: Lourenco et al. (2008). For related structures, see: Naveenkumar et al. (2009, 2010a,b). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536810025493/lh5074sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810025493/lh5074Isup2.hkl
The isoniazid derivative was prepared following the procedure by Lourenco et al., 2008. The title compound was prepared by reaction between the 2,4-bis(trifluoro-methyl)benzaldehyde (1.0 eq) with isoniazid (1.0 eq) in ethanol/water. After stirring for 1–3 h at room temperature, the resulting mixture was concentrated under reduced pressure. The residue, purified by washing with cold ethanol and diethyl ether, afforded the pure derivative. The colourless single-crystals suitable for X-ray analysis was obtained by recrystalization from ethanol.
Hydrogen atoms were positioned geometrically [N-H = 0.86Å, O-H = 0.84Å and C–H = 0.93 Å] and refined using a riding model, with Uiso(H) = 1.2Ueq(C,N) and 1.5Ueq(O). The H atoms of the water molecule were included in positions which give ideal geometry for hydrogen bonds.
In the search of new compounds, isoniazid derivatives have been found to possess potential tuberculostatic activity (Janin, 2007; Maccari et al., 2005; Slayden & Barry, 2000). As a part of a current work of synthesis of such derivatives, in this paper we present the
of the title compound.The ═N3A and C7B═N3B double bonds. The dihedral angles between the benzene ring and the pyridine ring in molecules A and B are 17.53 (12) and 20.62 (12)°, respectively.
consists of two Schiff base molecules [A and B] and one water molecule (Fig. 1). The geometric parameters are comparable to those related structures (Naveenkumar et al., 2009, 2010a, b). The molecules exist in E configurations with respect to the C7AIn the π–π interactions are also observed with Cg1···Cg1vi = 3.6529 (17) Å, Cg2···Cg3v = 3.7092 (16) Å and Cg4···Cg4iv = 3.6495 (17) Å [Cg1, Cg2, Cg3 and Cg4 are centroids of C1A/C2A/N1A/C3A/C4A/C5A, C8A–C13A, C1B/C2B/N1B/C3B/C4B/C5B and C8B–C13B rings, respectively; symmetry code: (iv) 1 - x,2 - y,1 - z; (v) 1 + x,3/2 - y,1/2 + z; (vi) 1 - x,2 - y,-z].
the molecules are linked by intermolecular N2A—H2NA···O1B, C7A—H7A···O1B, N2B—H2NB···O1A and C7B—H7B···O1A hydrogen bonds (Table 1) into infinite one-dimensional chains along the a axis. Intermolecular O1W—H1WB···N1B, O1W—H1WA···F2B, C9A—H9A···F2B, C2B—H2B···F1A and C12B—H12B···O1W hydrogen bonds further link these chains into a three-dimensional network (Fig. 2, Table 1). WeakFor applications of isoniazid derivatives, see: Janin (2007); Maccari et al. (2005); Slayden & Barry (2000); Kahwa et al. (1986). For the preparation of the title compound, see: Lourenco et al. (2008). For related structures, see: Naveenkumar et al. (2009, 2010a,b). For the stability of the temperature controller used for the data collection, see: Cosier & Glazer (1986).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The asymmetric unit of the title compound with atom labels and 30% probability ellipsoids for non-H atoms. | |
Fig. 2. The crystal packing of title compound, viewed along the a axis, showing the molecules are linked into a 3-D network. Intermolecular hydrogen bonds are shown as dashed lines. |
2C15H9F6N3O·H2O | F(000) = 1496 |
Mr = 740.52 | Dx = 1.602 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 8714 reflections |
a = 8.2487 (18) Å | θ = 2.7–30.0° |
b = 26.649 (6) Å | µ = 0.16 mm−1 |
c = 14.779 (3) Å | T = 100 K |
β = 109.076 (10)° | Needle, colourless |
V = 3070.3 (11) Å3 | 0.59 × 0.17 × 0.13 mm |
Z = 4 |
Bruker APEXII DUO CCD area-detector diffractometer | 7030 independent reflections |
Radiation source: fine-focus sealed tube | 5239 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.030 |
φ and ω scans | θmax = 27.5°, θmin = 1.5° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −10→10 |
Tmin = 0.914, Tmax = 0.980 | k = −34→34 |
29846 measured reflections | l = −19→19 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.057 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.162 | H-atom parameters constrained |
S = 1.02 | w = 1/[σ2(Fo2) + (0.0688P)2 + 3.4968P] where P = (Fo2 + 2Fc2)/3 |
7030 reflections | (Δ/σ)max = 0.001 |
460 parameters | Δρmax = 0.67 e Å−3 |
0 restraints | Δρmin = −0.68 e Å−3 |
2C15H9F6N3O·H2O | V = 3070.3 (11) Å3 |
Mr = 740.52 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 8.2487 (18) Å | µ = 0.16 mm−1 |
b = 26.649 (6) Å | T = 100 K |
c = 14.779 (3) Å | 0.59 × 0.17 × 0.13 mm |
β = 109.076 (10)° |
Bruker APEXII DUO CCD area-detector diffractometer | 7030 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 5239 reflections with I > 2σ(I) |
Tmin = 0.914, Tmax = 0.980 | Rint = 0.030 |
29846 measured reflections |
R[F2 > 2σ(F2)] = 0.057 | 0 restraints |
wR(F2) = 0.162 | H-atom parameters constrained |
S = 1.02 | Δρmax = 0.67 e Å−3 |
7030 reflections | Δρmin = −0.68 e Å−3 |
460 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1) K. |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
F1A | 1.3386 (2) | 0.67680 (7) | 0.46754 (17) | 0.0730 (6) | |
F2A | 1.2638 (3) | 0.64562 (7) | 0.32715 (17) | 0.0769 (7) | |
F3A | 1.1394 (2) | 0.62210 (6) | 0.42543 (13) | 0.0516 (4) | |
F4A | 0.53442 (19) | 0.72504 (6) | 0.14372 (11) | 0.0436 (4) | |
F5A | 0.57719 (19) | 0.66261 (5) | 0.24013 (13) | 0.0453 (4) | |
F6A | 0.49749 (17) | 0.73324 (5) | 0.27950 (11) | 0.0372 (3) | |
O1A | 0.83293 (19) | 0.95521 (6) | 0.18897 (12) | 0.0307 (4) | |
N1A | 0.2710 (3) | 1.04566 (8) | 0.05493 (16) | 0.0387 (5) | |
N2A | 0.6377 (2) | 0.89622 (6) | 0.19410 (14) | 0.0276 (4) | |
H2NA | 0.5315 | 0.8888 | 0.1828 | 0.033* | |
N3A | 0.7647 (2) | 0.86131 (6) | 0.23267 (14) | 0.0266 (4) | |
C1A | 0.3807 (3) | 0.96185 (8) | 0.07092 (17) | 0.0285 (5) | |
H1A | 0.3614 | 0.9281 | 0.0552 | 0.034* | |
C2A | 0.2523 (3) | 0.99707 (9) | 0.03320 (18) | 0.0346 (5) | |
H2A | 0.1481 | 0.9862 | −0.0093 | 0.041* | |
C3A | 0.4233 (3) | 1.06017 (8) | 0.11472 (19) | 0.0366 (5) | |
H3A | 0.4379 | 1.0939 | 0.1312 | 0.044* | |
C4A | 0.5604 (3) | 1.02840 (8) | 0.15360 (17) | 0.0298 (5) | |
H4A | 0.6652 | 1.0407 | 0.1930 | 0.036* | |
C5A | 0.5379 (3) | 0.97783 (7) | 0.13241 (15) | 0.0237 (4) | |
C6A | 0.6844 (3) | 0.94253 (7) | 0.17445 (16) | 0.0246 (4) | |
C7A | 0.7099 (3) | 0.81749 (8) | 0.24256 (17) | 0.0286 (5) | |
H7A | 0.5928 | 0.8111 | 0.2241 | 0.034* | |
C8A | 0.8339 (3) | 0.77756 (8) | 0.28328 (16) | 0.0265 (4) | |
C9A | 1.0062 (3) | 0.78936 (8) | 0.32681 (17) | 0.0292 (5) | |
H9A | 1.0408 | 0.8227 | 0.3305 | 0.035* | |
C10A | 1.1269 (3) | 0.75252 (9) | 0.36459 (17) | 0.0330 (5) | |
H10A | 1.2418 | 0.7609 | 0.3934 | 0.040* | |
C11A | 1.0749 (3) | 0.70289 (9) | 0.35908 (18) | 0.0339 (5) | |
C12A | 0.9041 (3) | 0.69018 (8) | 0.31789 (18) | 0.0328 (5) | |
H12A | 0.8702 | 0.6568 | 0.3158 | 0.039* | |
C13A | 0.7835 (3) | 0.72720 (8) | 0.27974 (17) | 0.0279 (5) | |
C14A | 1.2037 (3) | 0.66203 (10) | 0.3951 (2) | 0.0460 (7) | |
C15A | 0.5987 (3) | 0.71217 (8) | 0.23552 (18) | 0.0324 (5) | |
F1B | 0.9350 (3) | 1.07132 (10) | 0.53923 (16) | 0.0896 (8) | |
F2B | 0.7582 (4) | 1.12296 (12) | 0.5572 (2) | 0.1222 (12) | |
F3B | 0.8325 (3) | 1.12608 (8) | 0.43264 (16) | 0.0815 (7) | |
F4B | 0.0666 (2) | 1.04165 (6) | 0.38057 (14) | 0.0563 (5) | |
F5B | 0.1590 (3) | 1.11618 (6) | 0.37229 (16) | 0.0672 (6) | |
F6B | 0.0833 (2) | 1.06925 (6) | 0.24796 (14) | 0.0566 (5) | |
O1B | 0.3278 (2) | 0.84289 (7) | 0.17464 (18) | 0.0525 (6) | |
N1B | −0.2255 (3) | 0.75716 (8) | 0.00655 (16) | 0.0357 (5) | |
N2B | 0.1387 (2) | 0.89800 (7) | 0.19927 (14) | 0.0291 (4) | |
H2NB | 0.0338 | 0.9061 | 0.1909 | 0.035* | |
N3B | 0.2726 (2) | 0.92809 (7) | 0.25030 (14) | 0.0309 (4) | |
C1B | −0.1252 (3) | 0.84074 (8) | 0.05378 (17) | 0.0298 (5) | |
H1B | −0.1484 | 0.8750 | 0.0505 | 0.036* | |
C2B | −0.2489 (3) | 0.80662 (9) | 0.00503 (18) | 0.0337 (5) | |
H2B | −0.3558 | 0.8190 | −0.0313 | 0.040* | |
C3B | −0.0697 (3) | 0.74026 (9) | 0.05774 (19) | 0.0360 (5) | |
H3B | −0.0498 | 0.7059 | 0.0594 | 0.043* | |
C4B | 0.0630 (3) | 0.77130 (8) | 0.10816 (19) | 0.0335 (5) | |
H4B | 0.1699 | 0.7580 | 0.1420 | 0.040* | |
C5B | 0.0346 (3) | 0.82255 (8) | 0.10771 (17) | 0.0280 (5) | |
C6B | 0.1793 (3) | 0.85540 (8) | 0.16307 (19) | 0.0326 (5) | |
C7B | 0.2332 (3) | 0.96770 (9) | 0.28583 (17) | 0.0311 (5) | |
H7B | 0.1193 | 0.9757 | 0.2769 | 0.037* | |
C8B | 0.3734 (3) | 1.00068 (9) | 0.34169 (17) | 0.0322 (5) | |
C9B | 0.5420 (3) | 0.98353 (10) | 0.36821 (17) | 0.0359 (5) | |
H9B | 0.5634 | 0.9509 | 0.3530 | 0.043* | |
C10B | 0.6783 (3) | 1.01409 (11) | 0.41673 (18) | 0.0418 (6) | |
H10B | 0.7904 | 1.0024 | 0.4325 | 0.050* | |
C11B | 0.6459 (4) | 1.06192 (11) | 0.44127 (18) | 0.0448 (7) | |
C12B | 0.4801 (4) | 1.07976 (10) | 0.41867 (19) | 0.0434 (6) | |
H12B | 0.4600 | 1.1119 | 0.4370 | 0.052* | |
C13B | 0.3433 (3) | 1.04929 (9) | 0.36825 (18) | 0.0372 (6) | |
C14B | 0.7939 (5) | 1.09561 (14) | 0.4928 (2) | 0.0605 (9) | |
C15B | 0.1644 (4) | 1.06914 (10) | 0.3428 (2) | 0.0480 (7) | |
O1W | 0.5352 (5) | 0.82564 (14) | 0.4292 (3) | 0.1324 (16) | |
H1WA | 0.4487 | 0.8409 | 0.4331 | 0.199* | |
H1WB | 0.6041 | 0.8020 | 0.4512 | 0.199* |
U11 | U22 | U33 | U12 | U13 | U23 | |
F1A | 0.0290 (9) | 0.0562 (11) | 0.1136 (17) | 0.0121 (8) | −0.0043 (9) | 0.0302 (11) |
F2A | 0.0817 (15) | 0.0613 (12) | 0.1128 (17) | 0.0463 (11) | 0.0660 (14) | 0.0371 (11) |
F3A | 0.0366 (9) | 0.0357 (8) | 0.0809 (12) | 0.0138 (7) | 0.0172 (8) | 0.0275 (8) |
F4A | 0.0327 (8) | 0.0454 (8) | 0.0458 (8) | −0.0101 (6) | 0.0034 (6) | 0.0051 (7) |
F5A | 0.0328 (8) | 0.0190 (6) | 0.0825 (11) | −0.0040 (6) | 0.0165 (8) | 0.0044 (7) |
F6A | 0.0224 (7) | 0.0308 (7) | 0.0593 (9) | 0.0017 (5) | 0.0146 (6) | 0.0057 (6) |
O1A | 0.0182 (8) | 0.0218 (7) | 0.0493 (10) | −0.0021 (6) | 0.0074 (7) | 0.0024 (7) |
N1A | 0.0335 (11) | 0.0314 (10) | 0.0519 (13) | 0.0132 (9) | 0.0148 (10) | 0.0085 (9) |
N2A | 0.0159 (8) | 0.0177 (8) | 0.0468 (11) | 0.0019 (6) | 0.0071 (8) | 0.0052 (7) |
N3A | 0.0191 (9) | 0.0193 (8) | 0.0388 (10) | 0.0037 (7) | 0.0061 (7) | 0.0040 (7) |
C1A | 0.0211 (10) | 0.0203 (10) | 0.0425 (12) | −0.0008 (8) | 0.0083 (9) | 0.0023 (9) |
C2A | 0.0223 (11) | 0.0314 (12) | 0.0477 (14) | 0.0049 (9) | 0.0083 (10) | 0.0068 (10) |
C3A | 0.0455 (15) | 0.0180 (10) | 0.0490 (14) | 0.0064 (10) | 0.0191 (12) | 0.0015 (9) |
C4A | 0.0308 (12) | 0.0186 (10) | 0.0400 (12) | −0.0023 (8) | 0.0115 (10) | −0.0004 (9) |
C5A | 0.0182 (10) | 0.0167 (9) | 0.0370 (11) | −0.0001 (7) | 0.0099 (8) | 0.0028 (8) |
C6A | 0.0189 (10) | 0.0170 (9) | 0.0362 (11) | −0.0005 (7) | 0.0069 (8) | −0.0004 (8) |
C7A | 0.0179 (10) | 0.0207 (10) | 0.0447 (12) | 0.0010 (8) | 0.0068 (9) | 0.0049 (9) |
C8A | 0.0216 (10) | 0.0208 (10) | 0.0358 (11) | 0.0020 (8) | 0.0077 (9) | 0.0046 (8) |
C9A | 0.0231 (11) | 0.0235 (10) | 0.0389 (12) | −0.0009 (8) | 0.0072 (9) | 0.0040 (9) |
C10A | 0.0212 (11) | 0.0335 (12) | 0.0415 (13) | 0.0030 (9) | 0.0065 (9) | 0.0081 (10) |
C11A | 0.0275 (12) | 0.0298 (11) | 0.0458 (13) | 0.0087 (9) | 0.0137 (10) | 0.0113 (10) |
C12A | 0.0277 (12) | 0.0217 (10) | 0.0502 (14) | 0.0053 (9) | 0.0147 (10) | 0.0079 (9) |
C13A | 0.0217 (11) | 0.0219 (10) | 0.0400 (12) | 0.0022 (8) | 0.0101 (9) | 0.0049 (9) |
C14A | 0.0290 (13) | 0.0408 (14) | 0.0705 (19) | 0.0131 (11) | 0.0193 (13) | 0.0205 (13) |
C15A | 0.0267 (11) | 0.0197 (10) | 0.0501 (14) | −0.0001 (8) | 0.0116 (10) | 0.0053 (9) |
F1B | 0.0616 (14) | 0.1076 (18) | 0.0721 (14) | −0.0456 (13) | −0.0158 (11) | 0.0014 (12) |
F2B | 0.109 (2) | 0.157 (3) | 0.117 (2) | −0.089 (2) | 0.0587 (17) | −0.099 (2) |
F3B | 0.0739 (14) | 0.0757 (14) | 0.0837 (14) | −0.0487 (12) | 0.0104 (11) | 0.0088 (11) |
F4B | 0.0472 (10) | 0.0400 (9) | 0.0904 (13) | −0.0042 (7) | 0.0346 (9) | −0.0085 (8) |
F5B | 0.0679 (13) | 0.0311 (8) | 0.1054 (16) | −0.0032 (8) | 0.0319 (11) | −0.0196 (9) |
F6B | 0.0495 (10) | 0.0355 (8) | 0.0743 (12) | 0.0027 (7) | 0.0057 (9) | 0.0018 (8) |
O1B | 0.0177 (9) | 0.0292 (9) | 0.1087 (17) | −0.0001 (7) | 0.0179 (9) | −0.0146 (10) |
N1B | 0.0288 (10) | 0.0309 (10) | 0.0492 (12) | −0.0074 (8) | 0.0151 (9) | −0.0048 (9) |
N2B | 0.0140 (8) | 0.0239 (9) | 0.0475 (11) | −0.0008 (7) | 0.0072 (8) | −0.0026 (8) |
N3B | 0.0197 (9) | 0.0273 (9) | 0.0421 (11) | −0.0050 (7) | 0.0054 (8) | −0.0004 (8) |
C1B | 0.0224 (11) | 0.0239 (10) | 0.0436 (13) | 0.0035 (8) | 0.0113 (9) | −0.0010 (9) |
C2B | 0.0213 (11) | 0.0340 (12) | 0.0441 (13) | 0.0002 (9) | 0.0083 (9) | −0.0028 (10) |
C3B | 0.0341 (13) | 0.0216 (11) | 0.0552 (15) | −0.0009 (9) | 0.0185 (11) | −0.0001 (10) |
C4B | 0.0250 (11) | 0.0232 (11) | 0.0517 (14) | 0.0024 (9) | 0.0116 (10) | 0.0016 (10) |
C5B | 0.0199 (10) | 0.0219 (10) | 0.0446 (13) | −0.0003 (8) | 0.0135 (9) | −0.0011 (9) |
C6B | 0.0188 (11) | 0.0226 (10) | 0.0548 (14) | 0.0003 (8) | 0.0098 (10) | 0.0011 (10) |
C7B | 0.0221 (11) | 0.0294 (11) | 0.0411 (12) | −0.0028 (9) | 0.0094 (9) | −0.0010 (9) |
C8B | 0.0294 (12) | 0.0321 (12) | 0.0349 (12) | −0.0089 (9) | 0.0100 (9) | −0.0013 (9) |
C9B | 0.0284 (12) | 0.0429 (13) | 0.0355 (12) | −0.0084 (10) | 0.0091 (10) | −0.0034 (10) |
C10B | 0.0317 (13) | 0.0570 (17) | 0.0349 (13) | −0.0158 (12) | 0.0085 (10) | −0.0050 (11) |
C11B | 0.0447 (16) | 0.0560 (17) | 0.0330 (12) | −0.0245 (13) | 0.0118 (11) | −0.0063 (11) |
C12B | 0.0554 (17) | 0.0361 (13) | 0.0421 (14) | −0.0186 (12) | 0.0206 (12) | −0.0072 (11) |
C13B | 0.0402 (14) | 0.0325 (12) | 0.0407 (13) | −0.0098 (10) | 0.0157 (11) | −0.0028 (10) |
C14B | 0.062 (2) | 0.066 (2) | 0.0557 (18) | −0.0345 (17) | 0.0222 (17) | −0.0206 (16) |
C15B | 0.0508 (17) | 0.0283 (12) | 0.0659 (19) | −0.0044 (11) | 0.0207 (14) | −0.0073 (12) |
O1W | 0.119 (3) | 0.109 (3) | 0.134 (3) | 0.069 (2) | −0.006 (2) | −0.044 (2) |
F1A—C14A | 1.326 (4) | F2B—C14B | 1.306 (4) |
F2A—C14A | 1.331 (4) | F3B—C14B | 1.317 (4) |
F3A—C14A | 1.331 (3) | F4B—C15B | 1.339 (3) |
F4A—C15A | 1.330 (3) | F5B—C15B | 1.333 (3) |
F5A—C15A | 1.337 (3) | F6B—C15B | 1.341 (4) |
F6A—C15A | 1.338 (3) | O1B—C6B | 1.226 (3) |
O1A—C6A | 1.221 (3) | N1B—C2B | 1.331 (3) |
N1A—C2A | 1.331 (3) | N1B—C3B | 1.339 (3) |
N1A—C3A | 1.336 (3) | N2B—C6B | 1.343 (3) |
N2A—C6A | 1.352 (3) | N2B—N3B | 1.374 (3) |
N2A—N3A | 1.377 (2) | N2B—H2NB | 0.8600 |
N2A—H2NA | 0.8600 | N3B—C7B | 1.268 (3) |
N3A—C7A | 1.277 (3) | C1B—C2B | 1.381 (3) |
C1A—C5A | 1.385 (3) | C1B—C5B | 1.386 (3) |
C1A—C2A | 1.388 (3) | C1B—H1B | 0.9300 |
C1A—H1A | 0.9300 | C2B—H2B | 0.9300 |
C2A—H2A | 0.9300 | C3B—C4B | 1.380 (3) |
C3A—C4A | 1.379 (3) | C3B—H3B | 0.9300 |
C3A—H3A | 0.9300 | C4B—C5B | 1.385 (3) |
C4A—C5A | 1.382 (3) | C4B—H4B | 0.9300 |
C4A—H4A | 0.9300 | C5B—C6B | 1.490 (3) |
C5A—C6A | 1.496 (3) | C7B—C8B | 1.472 (3) |
C7A—C8A | 1.462 (3) | C7B—H7B | 0.9300 |
C7A—H7A | 0.9300 | C8B—C9B | 1.393 (4) |
C8A—C9A | 1.392 (3) | C8B—C13B | 1.399 (3) |
C8A—C13A | 1.401 (3) | C9B—C10B | 1.383 (3) |
C9A—C10A | 1.380 (3) | C9B—H9B | 0.9300 |
C9A—H9A | 0.9300 | C10B—C11B | 1.375 (4) |
C10A—C11A | 1.385 (3) | C10B—H10B | 0.9300 |
C10A—H10A | 0.9300 | C11B—C12B | 1.382 (4) |
C11A—C12A | 1.382 (3) | C11B—C14B | 1.506 (4) |
C11A—C14A | 1.493 (3) | C12B—C13B | 1.392 (4) |
C12A—C13A | 1.384 (3) | C12B—H12B | 0.9300 |
C12A—H12A | 0.9300 | C13B—C15B | 1.496 (4) |
C13A—C15A | 1.503 (3) | O1W—H1WA | 0.8400 |
F1B—C14B | 1.313 (5) | O1W—H1WB | 0.8400 |
C2A—N1A—C3A | 116.8 (2) | C6B—N2B—N3B | 116.85 (18) |
C6A—N2A—N3A | 118.29 (17) | C6B—N2B—H2NB | 121.6 |
C6A—N2A—H2NA | 120.9 | N3B—N2B—H2NB | 121.6 |
N3A—N2A—H2NA | 120.9 | C7B—N3B—N2B | 116.41 (19) |
C7A—N3A—N2A | 114.54 (18) | C2B—C1B—C5B | 118.1 (2) |
C5A—C1A—C2A | 118.9 (2) | C2B—C1B—H1B | 120.9 |
C5A—C1A—H1A | 120.5 | C5B—C1B—H1B | 120.9 |
C2A—C1A—H1A | 120.5 | N1B—C2B—C1B | 124.4 (2) |
N1A—C2A—C1A | 123.2 (2) | N1B—C2B—H2B | 117.8 |
N1A—C2A—H2A | 118.4 | C1B—C2B—H2B | 117.8 |
C1A—C2A—H2A | 118.4 | N1B—C3B—C4B | 123.3 (2) |
N1A—C3A—C4A | 124.3 (2) | N1B—C3B—H3B | 118.3 |
N1A—C3A—H3A | 117.8 | C4B—C3B—H3B | 118.3 |
C4A—C3A—H3A | 117.8 | C3B—C4B—C5B | 119.0 (2) |
C3A—C4A—C5A | 118.3 (2) | C3B—C4B—H4B | 120.5 |
C3A—C4A—H4A | 120.9 | C5B—C4B—H4B | 120.5 |
C5A—C4A—H4A | 120.9 | C4B—C5B—C1B | 118.4 (2) |
C4A—C5A—C1A | 118.4 (2) | C4B—C5B—C6B | 118.2 (2) |
C4A—C5A—C6A | 119.25 (19) | C1B—C5B—C6B | 123.4 (2) |
C1A—C5A—C6A | 122.32 (18) | O1B—C6B—N2B | 122.8 (2) |
O1A—C6A—N2A | 123.70 (19) | O1B—C6B—C5B | 120.0 (2) |
O1A—C6A—C5A | 121.77 (18) | N2B—C6B—C5B | 117.14 (19) |
N2A—C6A—C5A | 114.53 (18) | N3B—C7B—C8B | 118.0 (2) |
N3A—C7A—C8A | 119.11 (19) | N3B—C7B—H7B | 121.0 |
N3A—C7A—H7A | 120.4 | C8B—C7B—H7B | 121.0 |
C8A—C7A—H7A | 120.4 | C9B—C8B—C13B | 118.5 (2) |
C9A—C8A—C13A | 118.67 (19) | C9B—C8B—C7B | 119.4 (2) |
C9A—C8A—C7A | 119.81 (19) | C13B—C8B—C7B | 122.1 (2) |
C13A—C8A—C7A | 121.51 (19) | C10B—C9B—C8B | 121.3 (3) |
C10A—C9A—C8A | 121.3 (2) | C10B—C9B—H9B | 119.3 |
C10A—C9A—H9A | 119.4 | C8B—C9B—H9B | 119.3 |
C8A—C9A—H9A | 119.4 | C11B—C10B—C9B | 119.2 (3) |
C9A—C10A—C11A | 119.2 (2) | C11B—C10B—H10B | 120.4 |
C9A—C10A—H10A | 120.4 | C9B—C10B—H10B | 120.4 |
C11A—C10A—H10A | 120.4 | C10B—C11B—C12B | 121.1 (2) |
C12A—C11A—C10A | 120.8 (2) | C10B—C11B—C14B | 119.4 (3) |
C12A—C11A—C14A | 118.9 (2) | C12B—C11B—C14B | 119.4 (3) |
C10A—C11A—C14A | 120.3 (2) | C11B—C12B—C13B | 119.6 (3) |
C11A—C12A—C13A | 119.9 (2) | C11B—C12B—H12B | 120.2 |
C11A—C12A—H12A | 120.1 | C13B—C12B—H12B | 120.2 |
C13A—C12A—H12A | 120.1 | C12B—C13B—C8B | 120.2 (3) |
C12A—C13A—C8A | 120.2 (2) | C12B—C13B—C15B | 119.3 (2) |
C12A—C13A—C15A | 118.6 (2) | C8B—C13B—C15B | 120.5 (2) |
C8A—C13A—C15A | 121.20 (19) | F2B—C14B—F1B | 105.4 (3) |
F1A—C14A—F3A | 106.7 (2) | F2B—C14B—F3B | 108.0 (3) |
F1A—C14A—F2A | 106.6 (2) | F1B—C14B—F3B | 106.8 (3) |
F3A—C14A—F2A | 106.2 (2) | F2B—C14B—C11B | 111.3 (3) |
F1A—C14A—C11A | 112.5 (2) | F1B—C14B—C11B | 113.8 (3) |
F3A—C14A—C11A | 112.8 (2) | F3B—C14B—C11B | 111.2 (3) |
F2A—C14A—C11A | 111.6 (2) | F5B—C15B—F4B | 106.8 (2) |
F4A—C15A—F5A | 106.9 (2) | F5B—C15B—F6B | 106.3 (2) |
F4A—C15A—F6A | 106.45 (19) | F4B—C15B—F6B | 105.9 (2) |
F5A—C15A—F6A | 105.99 (19) | F5B—C15B—C13B | 112.7 (2) |
F4A—C15A—C13A | 112.60 (19) | F4B—C15B—C13B | 112.4 (2) |
F5A—C15A—C13A | 111.95 (19) | F6B—C15B—C13B | 112.2 (2) |
F6A—C15A—C13A | 112.5 (2) | H1WA—O1W—H1WB | 145.0 |
C2B—N1B—C3B | 116.7 (2) | ||
C6A—N2A—N3A—C7A | −175.0 (2) | C6B—N2B—N3B—C7B | −178.6 (2) |
C3A—N1A—C2A—C1A | 1.3 (4) | C3B—N1B—C2B—C1B | −1.3 (4) |
C5A—C1A—C2A—N1A | −1.7 (4) | C5B—C1B—C2B—N1B | 0.3 (4) |
C2A—N1A—C3A—C4A | 0.8 (4) | C2B—N1B—C3B—C4B | 0.6 (4) |
N1A—C3A—C4A—C5A | −2.4 (4) | N1B—C3B—C4B—C5B | 1.1 (4) |
C3A—C4A—C5A—C1A | 2.0 (3) | C3B—C4B—C5B—C1B | −2.1 (4) |
C3A—C4A—C5A—C6A | −179.5 (2) | C3B—C4B—C5B—C6B | 179.6 (2) |
C2A—C1A—C5A—C4A | −0.1 (3) | C2B—C1B—C5B—C4B | 1.4 (4) |
C2A—C1A—C5A—C6A | −178.6 (2) | C2B—C1B—C5B—C6B | 179.6 (2) |
N3A—N2A—C6A—O1A | 0.0 (3) | N3B—N2B—C6B—O1B | 0.6 (4) |
N3A—N2A—C6A—C5A | 179.77 (18) | N3B—N2B—C6B—C5B | 179.9 (2) |
C4A—C5A—C6A—O1A | −33.3 (3) | C4B—C5B—C6B—O1B | 29.3 (4) |
C1A—C5A—C6A—O1A | 145.2 (2) | C1B—C5B—C6B—O1B | −148.9 (3) |
C4A—C5A—C6A—N2A | 146.9 (2) | C4B—C5B—C6B—N2B | −150.0 (2) |
C1A—C5A—C6A—N2A | −34.6 (3) | C1B—C5B—C6B—N2B | 31.8 (4) |
N2A—N3A—C7A—C8A | −179.7 (2) | N2B—N3B—C7B—C8B | 179.5 (2) |
N3A—C7A—C8A—C9A | 12.0 (3) | N3B—C7B—C8B—C9B | −11.4 (3) |
N3A—C7A—C8A—C13A | −168.1 (2) | N3B—C7B—C8B—C13B | 167.7 (2) |
C13A—C8A—C9A—C10A | 1.1 (4) | C13B—C8B—C9B—C10B | −2.3 (4) |
C7A—C8A—C9A—C10A | −179.0 (2) | C7B—C8B—C9B—C10B | 176.9 (2) |
C8A—C9A—C10A—C11A | −0.1 (4) | C8B—C9B—C10B—C11B | 1.7 (4) |
C9A—C10A—C11A—C12A | −1.1 (4) | C9B—C10B—C11B—C12B | 0.3 (4) |
C9A—C10A—C11A—C14A | 177.1 (2) | C9B—C10B—C11B—C14B | −179.1 (3) |
C10A—C11A—C12A—C13A | 1.4 (4) | C10B—C11B—C12B—C13B | −1.5 (4) |
C14A—C11A—C12A—C13A | −176.8 (2) | C14B—C11B—C12B—C13B | 177.9 (3) |
C11A—C12A—C13A—C8A | −0.4 (4) | C11B—C12B—C13B—C8B | 0.8 (4) |
C11A—C12A—C13A—C15A | −180.0 (2) | C11B—C12B—C13B—C15B | −179.1 (3) |
C9A—C8A—C13A—C12A | −0.8 (3) | C9B—C8B—C13B—C12B | 1.0 (4) |
C7A—C8A—C13A—C12A | 179.2 (2) | C7B—C8B—C13B—C12B | −178.1 (2) |
C9A—C8A—C13A—C15A | 178.7 (2) | C9B—C8B—C13B—C15B | −179.0 (2) |
C7A—C8A—C13A—C15A | −1.2 (4) | C7B—C8B—C13B—C15B | 1.8 (4) |
C12A—C11A—C14A—F1A | −151.1 (2) | C10B—C11B—C14B—F2B | −142.1 (3) |
C10A—C11A—C14A—F1A | 30.6 (4) | C12B—C11B—C14B—F2B | 38.5 (4) |
C12A—C11A—C14A—F3A | −30.4 (4) | C10B—C11B—C14B—F1B | −23.1 (4) |
C10A—C11A—C14A—F3A | 151.4 (3) | C12B—C11B—C14B—F1B | 157.5 (3) |
C12A—C11A—C14A—F2A | 89.1 (3) | C10B—C11B—C14B—F3B | 97.5 (4) |
C10A—C11A—C14A—F2A | −89.1 (3) | C12B—C11B—C14B—F3B | −81.9 (4) |
C12A—C13A—C15A—F4A | −120.3 (2) | C12B—C13B—C15B—F5B | 0.8 (4) |
C8A—C13A—C15A—F4A | 60.1 (3) | C8B—C13B—C15B—F5B | −179.1 (2) |
C12A—C13A—C15A—F5A | 0.2 (3) | C12B—C13B—C15B—F4B | −120.0 (3) |
C8A—C13A—C15A—F5A | −179.4 (2) | C8B—C13B—C15B—F4B | 60.1 (3) |
C12A—C13A—C15A—F6A | 119.4 (2) | C12B—C13B—C15B—F6B | 120.8 (3) |
C8A—C13A—C15A—F6A | −60.2 (3) | C8B—C13B—C15B—F6B | −59.1 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
N2A—H2NA···O1B | 0.86 | 2.05 | 2.856 (3) | 156 |
N2B—H2NB···O1Ai | 0.86 | 2.10 | 2.908 (3) | 155 |
C7A—H7A···O1B | 0.93 | 2.23 | 3.055 (3) | 147 |
C7B—H7B···O1Ai | 0.93 | 2.36 | 3.158 (3) | 144 |
C2B—H2B···F1Aii | 0.93 | 2.52 | 3.294 (3) | 141 |
C9A—H9A···F2Biii | 0.93 | 2.41 | 3.162 (4) | 138 |
C12B—H12B···O1Wiv | 0.93 | 2.58 | 3.408 (5) | 149 |
O1W—H1WA···F2Biv | 0.84 | 2.01 | 2.845 (5) | 180 |
O1W—H1WB···N1Bv | 0.84 | 2.09 | 2.932 (5) | 180 |
Symmetry codes: (i) x−1, y, z; (ii) x−2, −y+3/2, z−1/2; (iii) −x+2, −y+2, −z+1; (iv) −x+1, −y+2, −z+1; (v) x+1, −y+3/2, z+1/2. |
Experimental details
Crystal data | |
Chemical formula | 2C15H9F6N3O·H2O |
Mr | 740.52 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 8.2487 (18), 26.649 (6), 14.779 (3) |
β (°) | 109.076 (10) |
V (Å3) | 3070.3 (11) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.16 |
Crystal size (mm) | 0.59 × 0.17 × 0.13 |
Data collection | |
Diffractometer | Bruker APEXII DUO CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.914, 0.980 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 29846, 7030, 5239 |
Rint | 0.030 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.057, 0.162, 1.02 |
No. of reflections | 7030 |
No. of parameters | 460 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.67, −0.68 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N2A—H2NA···O1B | 0.86 | 2.05 | 2.856 (3) | 156 |
N2B—H2NB···O1Ai | 0.86 | 2.10 | 2.908 (3) | 155 |
C7A—H7A···O1B | 0.93 | 2.23 | 3.055 (3) | 147 |
C7B—H7B···O1Ai | 0.93 | 2.36 | 3.158 (3) | 144 |
C2B—H2B···F1Aii | 0.93 | 2.52 | 3.294 (3) | 141 |
C9A—H9A···F2Biii | 0.93 | 2.41 | 3.162 (4) | 138 |
C12B—H12B···O1Wiv | 0.93 | 2.58 | 3.408 (5) | 149 |
O1W—H1WA···F2Biv | 0.84 | 2.01 | 2.845 (5) | 180 |
O1W—H1WB···N1Bv | 0.84 | 2.09 | 2.932 (5) | 180 |
Symmetry codes: (i) x−1, y, z; (ii) x−2, −y+3/2, z−1/2; (iii) −x+2, −y+2, −z+1; (iv) −x+1, −y+2, −z+1; (v) x+1, −y+3/2, z+1/2. |
Acknowledgements
This research was supported by Universiti Sains Malaysia (USM) under the Fundamental Research Grant Scheme (203/PFARMASI/671157). HSNK and CSY are grateful to USM for USM Fellowships. HKF and CSY thank USM for the Research University Golden Goose Grant (1001/PFIZIK/811012).
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In the search of new compounds, isoniazid derivatives have been found to possess potential tuberculostatic activity (Janin, 2007; Maccari et al., 2005; Slayden & Barry, 2000). As a part of a current work of synthesis of such derivatives, in this paper we present the crystal structure of the title compound.
The asymmetric unit consists of two Schiff base molecules [A and B] and one water molecule (Fig. 1). The geometric parameters are comparable to those related structures (Naveenkumar et al., 2009, 2010a, b). The molecules exist in E configurations with respect to the C7A═N3A and C7B═N3B double bonds. The dihedral angles between the benzene ring and the pyridine ring in molecules A and B are 17.53 (12) and 20.62 (12)°, respectively.
In the crystal structure, the molecules are linked by intermolecular N2A—H2NA···O1B, C7A—H7A···O1B, N2B—H2NB···O1A and C7B—H7B···O1A hydrogen bonds (Table 1) into infinite one-dimensional chains along the a axis. Intermolecular O1W—H1WB···N1B, O1W—H1WA···F2B, C9A—H9A···F2B, C2B—H2B···F1A and C12B—H12B···O1W hydrogen bonds further link these chains into a three-dimensional network (Fig. 2, Table 1). Weak π–π interactions are also observed with Cg1···Cg1vi = 3.6529 (17) Å, Cg2···Cg3v = 3.7092 (16) Å and Cg4···Cg4iv = 3.6495 (17) Å [Cg1, Cg2, Cg3 and Cg4 are centroids of C1A/C2A/N1A/C3A/C4A/C5A, C8A–C13A, C1B/C2B/N1B/C3B/C4B/C5B and C8B–C13B rings, respectively; symmetry code: (iv) 1 - x,2 - y,1 - z; (v) 1 + x,3/2 - y,1/2 + z; (vi) 1 - x,2 - y,-z].