organic compounds
(2S)-2-(4-Ethyl-2,3-dioxopiperazine-1-carboxamido)-2-(4-hydroxyphenyl)acetic acid
aDepartment of Chemistry, Shandong Normal University, Jinan 250014, People's Republic of China
*Correspondence e-mail: chdsguo@sdnu.edu.cn
There are two molecules in the 15H17N3O6. The 2,3-dioxopiperazine ring adopts a half-chair conformation with torsion angles of −7.6 (4) and 35.1 (4)° in one molecule, and 5.3 (4) and 45.4 (4)° in the other molecule. In the the carboxy groups are involved in classical inversion-related O—H⋯O hydrogen bonds, which link the molecules into centrosymmetric dimers. These dimers are further linked by intermolecular O—H⋯O and C—H⋯O hydrogen bonds. Each independent molecule also exhibits an intramolecular N—H⋯O hydrogen bond. The H atoms of the carboxy groups are disordered over two positions, with refined site-occupancy factors of 0.5.
of the title compound, CRelated literature
For general background to cefoperazone, a third generation cephalosporin antibiotic, and HO-EPCP [(2R)-2-(4-ethyl-2,3-dioxopiperazine-1-carboxamido)-2-(4-hydroxyphenyl)acetic acid], which has been investigated extensively as a key intermediate for the synthesis of cefoperazone, see: Spyker et al. (1985); Chen et al. (2009); Murakami et al. (1981); Albrecht et al. (1991). For the synthesis of the (2S)-enantiomer of (HO-EPCP), see: De Lorenzi et al. (2001). For a related structure, see: Lenstra et al. (1998). For disordered carboxy dimers, see: Leiserowitz (1976); Feeder & Jones (1996). For helical chains, see: Adachi et al. (2001); Xu et al.(2003); Enamullah et al. (2006). For hydrogen-bond motifs, see: Bernstein et al. (1995). For the synthesis, see: Saikawa et al. (1978).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: SMART (Bruker, 1999); cell SAINT (Bruker, 1999); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S1600536810025262/lx2155sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810025262/lx2155Isup2.hkl
The title compound was obtained as a white solid in 80% yield by a similar method used for the synthesis of its (2R)-enantiomer (Saikawa et al., 1978). 1H NMR (300 MHz, DMSO-d6): δ 9.68 (d, 1H, J = 6.42 Hz), 9.58 (s, 1H), 7.18 (d, 2H, J = 8.27 Hz), 6.77 (d, 2H, J = 8.27 Hz), 5.20 (d, 1H, J = 6.44 Hz), 3.90 (br, 2H), 3.56 (br, 2H), 3.40 (m, 2H), 1.08 (t, 3H, J = 7.06 Hz). Single crystals of the title compound suitable for X-ray were obtained by slow cooling of a hot solution in H2O.
Hydrogen atoms attached to refined atoms were placed in geometrically idealized positions and refined using a riding model, with C—H = 0.93, 0.97 and 0.96 Å for aromatic, methylene and methyl H, respectively, and Uiso(H) = 1.5Ueq(C) for methyl H, and Uiso(H) =1.2Ueq(C) for all other H atoms. The H atoms (H4O, H5O, H11O, and H10O) of carboxy groups were located in the different map and refined isotropically subject to an O—H = 0.85 (10) Å distance over two orientations in a 50/50 ratio. These C—O bonds were restrained to be the same within a standard deviation of 0.01 Å, total 16 restrains were used to model the two carboxy groups. In the absence of significant
effects, measured Friedel pairs were merged.Among enantiomers of 2-(4-ethyl-3-dioxo-1-piperazinyl)carboxamido]-2-(4-hydroxyphenyl)acetic acid, its (2R)-enantiomer (HO-EPCP) has been extensively investigated as a key intermediate for the synthesis of cefoperazone (Murakami et al., 1981; Albrecht et al., 1991), which is a third generation cephalosporin antibiotic (Spyker et al., 1985; Chen et al., 2009), whereas its (2S)-enantiomer was presented only one time as a chiral compound of pharmaceutical interest evaluated for enantiorecognition (De Lorenzi et al., 2001). Now we report the
of the title compound which crystallizes with two unique molecules, denoted as A & B, in the (Fig. 1).The two molecules (A and B) are linked into a dimer through classical inversion-related O—H···O hydrogen bonds (Table 1) between the carboxy groups of A and B, where the H atoms of the carboxy groups are disordered over two positions, with refined site-occupancy factors of 0.5 and 0.5. The disordered model for the carboxy group may be ascribed to the requirement of intermolecular forces (Leiserowitz, 1976; Feeder et al., 1996). Both molecules possess similar geometric parameters except for the slight differences in some bond lenghths and angles. The 2,3-dioxopiperazine ring adopts a half-chair conformation with torsion angles of -7.6 (4) and 35.1 (4)° in A, while 5.3 (4) and 45.4 (4)° in B, similar to those of -3.3 (4) and 38.6 (4)° reported previously for the related molecule 2,3-diketopiperazine (Lenstra et al., 1998). The dihedral angle between the two benzene rings belonging to A and B in the dimer is 47.32 (10)°. The intramolecular N3—H3···O2 and N6—H6D···O8 hydrogen bonds exist (Table 1) and create an R(6) ring motif (Bernstein et al., 1995) in either molecule.
The packing of the title compound is obviously stabilized by the intermolecular O—H···O and C—H···O hydrogen bonds. For the molecule A, an infinite one-dimensional helix chain (Adachi et al. 2001; Xu et al. 2003) is formed by a combination of the intermolecular O—H···O and C—H···O hydrogen bonds (Fig. 2), locally giving an R22(9) ring motif (Bernstein et al., 1995). This motif arises from atoms O6—H6 and C12—H12 in the molecule at (x, y, z), which act as hydrogen-bond donors, to atoms O1 and O2 in the neighboring molecule at (x + 1/2, -y + 1/2, -z + 1). For the molecule B, the same infinite one-dimensional helix chain is generated through a combination of the intermolecular O12—H12A···O7ii and C27—H27···O8ii [symmetry code: (ii) x + 1/2, -y + 5/2, -z + 1] hydrogen bonds. Finally, the helix chains of both molecules are alternatively linked by the interchain O—H···O hydrogen bonds to produce a two-dimensional network (Fig. 3) in the ab plane. Such helix chains of the title molecule may be significant in simulating of the life system.
For general background to cefoperazone, a third generation cephalosporin antibiotic, and HO-EPCP, which has been investigated extensively as a key intermediate for the synthesis of cefoperazone, see: Spyker et al. (1985); Chen et al. (2009); Murakami et al. (1981); Albrecht et al. (1991); De Lorenzi et al. (2001). For a related structure, see: Lenstra et al. (1998). For disordered carboxy dimers, see: Leiserowitz (1976); Feeder et al. (1996). For helical chains, see: Adachi et al. (2001); Xu et al.(2003); Enamullah et al.(2006). For hydrogen-bond motifs, see: Bernstein et al. (1995). For the synthesis, see: Saikawa et al. (1978).
Data collection: SMART (Bruker, 1999); cell
SAINT (Bruker, 1999); data reduction: SAINT (Bruker, 1999); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).Fig. 1. A view of the title compound, showing 30% probability displacement ellipsoids. The disordered moieties (dotted lines) are shown. | |
Fig. 2. The hydrogen-bonded one-dimensional helix chain of the molecule A with an R22(9) ring motif viewed along the c axis. The disordered moieties and some hydrogen atoms are omitted for clarity. [Symmetry code: (i) x + 1/2, - y + 1/2, - z + 1]. | |
Fig. 3. The two-dimensional network of the title compound with R22(8) and R22(9) ring motifs viewed along the c axis. The disordered moieties and some hydrogen atoms are omitted for clarity. [Symmetry codes: (i) x + 1/2, - y + 1/2, - z + 1; (ii) x + 1/2, - y+ 5/2, - z + 1]. |
C15H17N3O6 | F(000) = 1408 |
Mr = 335.32 | Dx = 1.418 Mg m−3 |
Orthorhombic, P212121 | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: P 2ac 2ab | Cell parameters from 3149 reflections |
a = 11.5899 (19) Å | θ = 2.5–22.5° |
b = 13.038 (2) Å | µ = 0.11 mm−1 |
c = 20.794 (3) Å | T = 298 K |
V = 3142.2 (9) Å3 | Bar, colourless |
Z = 8 | 0.51 × 0.15 × 0.09 mm |
Bruker SMART CCD area-detector diffractometer | 2722 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.040 |
Graphite monochromator | θmax = 25.4°, θmin = 1.8° |
Detector resolution: 10.0 pixels mm-1 | h = −13→13 |
phi and ω scans | k = −15→15 |
16467 measured reflections | l = −18→25 |
3237 independent reflections |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.044 | Hydrogen site location: difference Fourier map |
wR(F2) = 0.107 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0613P)2 + 0.0947P] where P = (Fo2 + 2Fc2)/3 |
3237 reflections | (Δ/σ)max < 0.001 |
449 parameters | Δρmax = 0.18 e Å−3 |
16 restraints | Δρmin = −0.16 e Å−3 |
C15H17N3O6 | V = 3142.2 (9) Å3 |
Mr = 335.32 | Z = 8 |
Orthorhombic, P212121 | Mo Kα radiation |
a = 11.5899 (19) Å | µ = 0.11 mm−1 |
b = 13.038 (2) Å | T = 298 K |
c = 20.794 (3) Å | 0.51 × 0.15 × 0.09 mm |
Bruker SMART CCD area-detector diffractometer | 2722 reflections with I > 2σ(I) |
16467 measured reflections | Rint = 0.040 |
3237 independent reflections |
R[F2 > 2σ(F2)] = 0.044 | 16 restraints |
wR(F2) = 0.107 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 0.18 e Å−3 |
3237 reflections | Δρmin = −0.16 e Å−3 |
449 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F^2^ against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F^2^, conventional R-factors R are based on F, with F set to zero for negative F^2^. The threshold expression of F^2^ > σ(F^2^) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F^2^ are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
O5 | 0.6862 (2) | 0.66654 (17) | 0.51841 (12) | 0.0584 (6) | |
C1 | 0.4645 (3) | 0.3773 (2) | 0.73859 (14) | 0.0421 (7) | |
C2 | 0.5301 (3) | 0.4183 (2) | 0.67963 (14) | 0.0379 (7) | |
C3 | 0.6229 (4) | 0.5339 (3) | 0.75568 (14) | 0.0608 (10) | |
H3A | 0.5614 | 0.5831 | 0.7630 | 0.073* | |
H3B | 0.6960 | 0.5696 | 0.7598 | 0.073* | |
C4 | 0.6161 (3) | 0.4511 (3) | 0.80428 (14) | 0.0515 (8) | |
H4A | 0.6815 | 0.4052 | 0.7994 | 0.062* | |
H4B | 0.6191 | 0.4805 | 0.8471 | 0.062* | |
C5 | 0.4652 (3) | 0.3361 (3) | 0.85232 (14) | 0.0534 (9) | |
H5A | 0.3841 | 0.3206 | 0.8457 | 0.064* | |
H5B | 0.4717 | 0.3781 | 0.8906 | 0.064* | |
C6 | 0.5296 (4) | 0.2396 (3) | 0.86191 (19) | 0.0841 (13) | |
H6A | 0.4973 | 0.2028 | 0.8976 | 0.126* | |
H6B | 0.6091 | 0.2549 | 0.8705 | 0.126* | |
H6C | 0.5242 | 0.1983 | 0.8238 | 0.126* | |
C7 | 0.6935 (3) | 0.5273 (2) | 0.64418 (14) | 0.0468 (8) | |
C8 | 0.78013 (16) | 0.6197 (2) | 0.52363 (14) | 0.0420 (7) | |
C9 | 0.7784 (3) | 0.5059 (2) | 0.53998 (13) | 0.0417 (7) | |
H9 | 0.8536 | 0.4865 | 0.5578 | 0.050* | |
C10 | 0.7571 (3) | 0.4445 (2) | 0.47940 (13) | 0.0392 (7) | |
C11 | 0.8371 (3) | 0.3733 (2) | 0.45867 (14) | 0.0445 (8) | |
H11 | 0.9052 | 0.3646 | 0.4817 | 0.053* | |
C12 | 0.8176 (3) | 0.3146 (2) | 0.40408 (15) | 0.0474 (8) | |
H12 | 0.8723 | 0.2671 | 0.3905 | 0.057* | |
C13 | 0.7164 (3) | 0.3271 (2) | 0.37011 (14) | 0.0435 (8) | |
C14 | 0.6354 (3) | 0.3972 (3) | 0.39031 (15) | 0.0507 (8) | |
H14 | 0.5671 | 0.4058 | 0.3674 | 0.061* | |
C15 | 0.6563 (3) | 0.4549 (2) | 0.44491 (15) | 0.0480 (8) | |
H15 | 0.6011 | 0.5018 | 0.4587 | 0.058* | |
C16 | 0.4769 (4) | 1.2845 (3) | 0.1574 (2) | 0.0929 (15) | |
H16A | 0.4413 | 1.3066 | 0.1967 | 0.139* | |
H16B | 0.4416 | 1.3192 | 0.1218 | 0.139* | |
H16C | 0.5577 | 1.3003 | 0.1585 | 0.139* | |
C17 | 0.4611 (3) | 1.1708 (3) | 0.14984 (15) | 0.0552 (9) | |
H17A | 0.3794 | 1.1548 | 0.1495 | 0.066* | |
H17B | 0.4935 | 1.1492 | 0.1090 | 0.066* | |
C18 | 0.4657 (3) | 1.1091 (2) | 0.25917 (14) | 0.0415 (7) | |
C19 | 0.5391 (3) | 1.0779 (2) | 0.31764 (13) | 0.0379 (7) | |
C20 | 0.6653 (3) | 0.9982 (3) | 0.23883 (13) | 0.0564 (9) | |
H20A | 0.6198 | 0.9381 | 0.2282 | 0.068* | |
H20B | 0.7462 | 0.9806 | 0.2344 | 0.068* | |
C21 | 0.6363 (3) | 1.0832 (3) | 0.19387 (14) | 0.0535 (9) | |
H21A | 0.6867 | 1.1412 | 0.2020 | 0.064* | |
H21B | 0.6484 | 1.0608 | 0.1499 | 0.064* | |
C22 | 0.7251 (3) | 1.0017 (2) | 0.35317 (14) | 0.0413 (7) | |
C23 | 0.7895 (3) | 1.0151 (2) | 0.46270 (13) | 0.0400 (7) | |
H23 | 0.8671 | 1.0322 | 0.4474 | 0.048* | |
C24 | 0.78669 (17) | 0.9022 (2) | 0.48071 (13) | 0.0403 (7) | |
C25 | 0.7646 (3) | 1.0775 (2) | 0.52265 (13) | 0.0380 (7) | |
C26 | 0.8464 (3) | 1.1431 (2) | 0.54761 (15) | 0.0450 (7) | |
H26 | 0.9170 | 1.1500 | 0.5268 | 0.054* | |
C27 | 0.8258 (3) | 1.1987 (2) | 0.60304 (14) | 0.0484 (8) | |
H27 | 0.8823 | 1.2423 | 0.6193 | 0.058* | |
C28 | 0.7214 (3) | 1.1894 (2) | 0.63420 (14) | 0.0441 (8) | |
C29 | 0.6382 (3) | 1.1250 (3) | 0.60949 (15) | 0.0540 (9) | |
H29 | 0.5673 | 1.1188 | 0.6301 | 0.065* | |
C30 | 0.6598 (3) | 1.0695 (2) | 0.55422 (15) | 0.0494 (8) | |
H30 | 0.6032 | 1.0262 | 0.5380 | 0.059* | |
N1 | 0.5094 (2) | 0.39370 (19) | 0.79653 (11) | 0.0421 (6) | |
N2 | 0.6125 (2) | 0.49079 (18) | 0.69051 (11) | 0.0448 (6) | |
N3 | 0.6901 (2) | 0.48256 (18) | 0.58659 (10) | 0.0440 (6) | |
H3 | 0.6357 | 0.4402 | 0.5773 | 0.053* | |
N4 | 0.5174 (2) | 1.11428 (19) | 0.20220 (11) | 0.0412 (6) | |
N5 | 0.6415 (2) | 1.02945 (18) | 0.30565 (10) | 0.0402 (6) | |
N6 | 0.7073 (2) | 1.03845 (17) | 0.41218 (10) | 0.0421 (6) | |
H6D | 0.6477 | 1.0756 | 0.4202 | 0.051* | |
O1 | 0.3770 (2) | 0.3277 (2) | 0.72961 (11) | 0.0663 (7) | |
O2 | 0.50699 (18) | 0.38196 (17) | 0.62759 (9) | 0.0482 (6) | |
O3 | 0.7594 (2) | 0.59548 (19) | 0.65771 (11) | 0.0759 (9) | |
O4 | 0.8770 (2) | 0.65925 (18) | 0.51346 (13) | 0.0615 (7) | |
H4O | 0.900 (8) | 0.722 (3) | 0.509 (4) | 0.092* | 0.50 |
H5O | 0.687 (9) | 0.726 (3) | 0.500 (4) | 0.092* | 0.50 |
O6 | 0.6918 (2) | 0.27188 (18) | 0.31598 (10) | 0.0590 (6) | |
H6 | 0.7493 | 0.2401 | 0.3046 | 0.088* | |
O7 | 0.3658 (2) | 1.1346 (2) | 0.26865 (11) | 0.0609 (7) | |
O8 | 0.50410 (18) | 1.10077 (18) | 0.37060 (9) | 0.0507 (6) | |
O9 | 0.8068 (2) | 0.94970 (17) | 0.33806 (10) | 0.0625 (7) | |
O10 | 0.8777 (2) | 0.86393 (17) | 0.50285 (12) | 0.0532 (6) | |
H10O | 0.881 (7) | 0.798 (2) | 0.503 (4) | 0.080* | 0.50 |
O11 | 0.6930 (2) | 0.85492 (17) | 0.47513 (12) | 0.0604 (7) | |
H11O | 0.679 (8) | 0.800 (4) | 0.496 (4) | 0.091* | 0.50 |
O12 | 0.6966 (2) | 1.24064 (19) | 0.68955 (10) | 0.0615 (7) | |
H12A | 0.7521 | 1.2758 | 0.7000 | 0.092* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O5 | 0.0529 (15) | 0.0450 (13) | 0.0772 (16) | 0.0050 (12) | 0.0103 (13) | 0.0107 (12) |
C1 | 0.0428 (19) | 0.0438 (17) | 0.0398 (17) | −0.0002 (16) | 0.0001 (15) | −0.0009 (13) |
C2 | 0.0387 (17) | 0.0364 (15) | 0.0386 (17) | 0.0030 (14) | 0.0005 (14) | 0.0016 (13) |
C3 | 0.085 (3) | 0.059 (2) | 0.0387 (18) | −0.026 (2) | 0.0137 (18) | −0.0173 (16) |
C4 | 0.057 (2) | 0.066 (2) | 0.0320 (16) | −0.0083 (18) | 0.0017 (15) | −0.0093 (15) |
C5 | 0.057 (2) | 0.064 (2) | 0.0388 (17) | 0.0020 (18) | 0.0073 (16) | 0.0106 (15) |
C6 | 0.115 (4) | 0.065 (3) | 0.072 (3) | 0.010 (3) | 0.007 (3) | 0.021 (2) |
C7 | 0.060 (2) | 0.0418 (16) | 0.0389 (17) | −0.0105 (17) | 0.0088 (15) | 0.0007 (14) |
C8 | 0.046 (2) | 0.0422 (16) | 0.0375 (16) | −0.0016 (16) | 0.0079 (15) | 0.0004 (13) |
C9 | 0.0481 (19) | 0.0394 (15) | 0.0375 (16) | 0.0039 (15) | 0.0048 (14) | 0.0043 (12) |
C10 | 0.0469 (19) | 0.0338 (14) | 0.0370 (15) | 0.0008 (13) | 0.0073 (14) | 0.0068 (12) |
C11 | 0.0459 (19) | 0.0422 (16) | 0.0454 (17) | 0.0058 (15) | 0.0025 (15) | 0.0069 (14) |
C12 | 0.051 (2) | 0.0400 (15) | 0.0511 (19) | 0.0093 (15) | 0.0143 (16) | 0.0010 (14) |
C13 | 0.055 (2) | 0.0370 (15) | 0.0383 (16) | −0.0053 (15) | 0.0132 (15) | −0.0008 (13) |
C14 | 0.051 (2) | 0.0588 (19) | 0.0428 (18) | 0.0054 (18) | 0.0011 (15) | −0.0040 (16) |
C15 | 0.050 (2) | 0.0492 (18) | 0.0447 (18) | 0.0147 (16) | 0.0060 (16) | −0.0026 (15) |
C16 | 0.126 (4) | 0.071 (3) | 0.082 (3) | 0.003 (3) | −0.029 (3) | 0.025 (2) |
C17 | 0.046 (2) | 0.081 (2) | 0.0387 (18) | 0.0045 (19) | −0.0083 (16) | 0.0017 (17) |
C18 | 0.044 (2) | 0.0415 (17) | 0.0391 (17) | −0.0024 (15) | −0.0020 (15) | −0.0052 (13) |
C19 | 0.0425 (18) | 0.0359 (15) | 0.0353 (16) | −0.0011 (14) | 0.0030 (14) | −0.0010 (12) |
C20 | 0.064 (2) | 0.069 (2) | 0.0363 (17) | 0.026 (2) | −0.0042 (16) | −0.0180 (16) |
C21 | 0.047 (2) | 0.080 (2) | 0.0333 (17) | 0.0110 (19) | 0.0011 (14) | −0.0053 (16) |
C22 | 0.0510 (19) | 0.0342 (14) | 0.0387 (16) | 0.0073 (15) | −0.0022 (15) | 0.0003 (12) |
C23 | 0.0442 (18) | 0.0400 (15) | 0.0357 (15) | −0.0017 (14) | −0.0033 (13) | 0.0050 (12) |
C24 | 0.0473 (19) | 0.0417 (15) | 0.0319 (15) | −0.0015 (16) | −0.0054 (14) | −0.0003 (12) |
C25 | 0.0423 (18) | 0.0354 (14) | 0.0364 (15) | 0.0009 (13) | −0.0058 (14) | 0.0050 (12) |
C26 | 0.0423 (19) | 0.0475 (17) | 0.0453 (17) | −0.0079 (15) | 0.0012 (14) | 0.0069 (14) |
C27 | 0.051 (2) | 0.0456 (17) | 0.0486 (18) | −0.0088 (16) | −0.0108 (16) | −0.0060 (14) |
C28 | 0.049 (2) | 0.0426 (15) | 0.0408 (17) | 0.0048 (16) | −0.0101 (15) | 0.0007 (13) |
C29 | 0.049 (2) | 0.065 (2) | 0.0489 (19) | −0.0050 (19) | 0.0057 (16) | −0.0076 (16) |
C30 | 0.047 (2) | 0.0521 (19) | 0.0492 (19) | −0.0146 (16) | −0.0025 (16) | −0.0068 (15) |
N1 | 0.0449 (16) | 0.0437 (13) | 0.0377 (13) | 0.0032 (12) | 0.0022 (12) | 0.0041 (11) |
N2 | 0.0634 (18) | 0.0390 (13) | 0.0320 (13) | −0.0106 (13) | 0.0090 (12) | −0.0028 (11) |
N3 | 0.0565 (17) | 0.0417 (13) | 0.0339 (13) | −0.0120 (13) | 0.0062 (12) | 0.0009 (11) |
N4 | 0.0406 (15) | 0.0501 (14) | 0.0330 (13) | 0.0015 (12) | −0.0020 (11) | −0.0019 (11) |
N5 | 0.0478 (16) | 0.0409 (13) | 0.0318 (12) | 0.0108 (12) | −0.0036 (11) | −0.0057 (10) |
N6 | 0.0526 (17) | 0.0398 (13) | 0.0339 (13) | 0.0080 (13) | −0.0028 (12) | 0.0020 (11) |
O1 | 0.0525 (16) | 0.0900 (18) | 0.0564 (15) | −0.0224 (15) | −0.0003 (12) | 0.0063 (14) |
O2 | 0.0522 (14) | 0.0569 (13) | 0.0355 (12) | −0.0080 (11) | −0.0067 (10) | −0.0026 (10) |
O3 | 0.099 (2) | 0.0766 (16) | 0.0520 (14) | −0.0526 (17) | 0.0165 (14) | −0.0137 (13) |
O4 | 0.0525 (16) | 0.0522 (14) | 0.0799 (17) | −0.0074 (13) | 0.0115 (13) | 0.0142 (13) |
O6 | 0.0652 (16) | 0.0586 (14) | 0.0530 (14) | −0.0088 (13) | 0.0116 (12) | −0.0176 (11) |
O7 | 0.0371 (14) | 0.0910 (18) | 0.0545 (14) | 0.0106 (13) | 0.0005 (11) | −0.0080 (13) |
O8 | 0.0486 (14) | 0.0694 (14) | 0.0341 (12) | 0.0074 (12) | 0.0080 (10) | 0.0019 (10) |
O9 | 0.0718 (17) | 0.0650 (15) | 0.0508 (13) | 0.0346 (14) | −0.0129 (12) | −0.0133 (11) |
O10 | 0.0516 (14) | 0.0462 (12) | 0.0619 (14) | 0.0026 (12) | −0.0150 (11) | 0.0048 (11) |
O11 | 0.0536 (15) | 0.0461 (12) | 0.0816 (18) | −0.0110 (12) | −0.0200 (14) | 0.0137 (12) |
O12 | 0.0635 (17) | 0.0705 (16) | 0.0504 (13) | 0.0077 (14) | −0.0068 (12) | −0.0234 (12) |
O5—C8 | 1.2534 (17) | C16—H16C | 0.9600 |
O5—O10 | 3.414 (3) | C17—N4 | 1.468 (4) |
O5—H5O | 0.86 (3) | C17—H17A | 0.9700 |
C1—O1 | 1.217 (4) | C17—H17B | 0.9700 |
C1—N1 | 1.330 (4) | C18—O7 | 1.221 (4) |
C1—C2 | 1.539 (4) | C18—N4 | 1.329 (4) |
C2—O2 | 1.211 (3) | C18—C19 | 1.539 (4) |
C2—N2 | 1.362 (4) | C19—O8 | 1.211 (3) |
C3—N2 | 1.472 (4) | C19—N5 | 1.367 (4) |
C3—C4 | 1.482 (5) | C20—N5 | 1.474 (3) |
C3—H3A | 0.9700 | C20—C21 | 1.488 (4) |
C3—H3B | 0.9700 | C20—H20A | 0.9700 |
C4—N1 | 1.454 (4) | C20—H20B | 0.9700 |
C4—H4A | 0.9700 | C21—N4 | 1.447 (4) |
C4—H4B | 0.9700 | C21—H21A | 0.9700 |
C5—N1 | 1.474 (4) | C21—H21B | 0.9700 |
C5—C6 | 1.476 (5) | C22—O9 | 1.206 (4) |
C5—H5A | 0.9700 | C22—N6 | 1.333 (3) |
C5—H5B | 0.9700 | C22—N5 | 1.431 (4) |
C6—H6A | 0.9600 | C23—N6 | 1.450 (4) |
C6—H6B | 0.9600 | C23—C25 | 1.516 (4) |
C6—H6C | 0.9600 | C23—C24 | 1.520 (4) |
C7—O3 | 1.206 (4) | C23—H23 | 0.9800 |
C7—N3 | 1.332 (4) | C24—O10 | 1.2537 (17) |
C7—N2 | 1.427 (4) | C24—O11 | 1.2538 (17) |
C8—O4 | 1.2538 (17) | C25—C26 | 1.378 (4) |
C8—C9 | 1.523 (4) | C25—C30 | 1.384 (4) |
C9—N3 | 1.442 (4) | C26—C27 | 1.383 (4) |
C9—C10 | 1.513 (4) | C26—H26 | 0.9300 |
C9—H9 | 0.9800 | C27—C28 | 1.378 (5) |
C10—C15 | 1.378 (4) | C27—H27 | 0.9300 |
C10—C11 | 1.381 (4) | C28—O12 | 1.362 (3) |
C11—C12 | 1.388 (4) | C28—C29 | 1.379 (4) |
C11—H11 | 0.9300 | C29—C30 | 1.381 (4) |
C12—C13 | 1.379 (5) | C29—H29 | 0.9300 |
C12—H12 | 0.9300 | C30—H30 | 0.9300 |
C13—O6 | 1.367 (3) | N3—H3 | 0.8600 |
C13—C14 | 1.376 (4) | N6—H6D | 0.8600 |
C14—C15 | 1.383 (4) | O4—H4O | 0.86 (3) |
C14—H14 | 0.9300 | O6—H6 | 0.8200 |
C15—H15 | 0.9300 | O10—H10O | 0.86 (3) |
C16—C17 | 1.501 (6) | O11—H11O | 0.86 (3) |
C16—H16A | 0.9600 | O12—H12A | 0.8200 |
C16—H16B | 0.9600 | ||
C8—O5—O10 | 79.07 (15) | H17A—C17—H17B | 108.0 |
C8—O5—H5O | 117 (7) | O7—C18—N4 | 123.9 (3) |
O10—O5—H5O | 43 (7) | O7—C18—C19 | 118.0 (3) |
O1—C1—N1 | 123.4 (3) | N4—C18—C19 | 117.9 (3) |
O1—C1—C2 | 118.3 (3) | O8—C19—N5 | 124.8 (3) |
N1—C1—C2 | 118.2 (3) | O8—C19—C18 | 117.9 (3) |
O2—C2—N2 | 125.1 (3) | N5—C19—C18 | 117.3 (2) |
O2—C2—C1 | 117.8 (3) | N5—C20—C21 | 110.1 (3) |
N2—C2—C1 | 117.1 (3) | N5—C20—H20A | 109.6 |
N2—C3—C4 | 110.2 (3) | C21—C20—H20A | 109.6 |
N2—C3—H3A | 109.6 | N5—C20—H20B | 109.6 |
C4—C3—H3A | 109.6 | C21—C20—H20B | 109.6 |
N2—C3—H3B | 109.6 | H20A—C20—H20B | 108.1 |
C4—C3—H3B | 109.6 | N4—C21—C20 | 110.4 (3) |
H3A—C3—H3B | 108.1 | N4—C21—H21A | 109.6 |
N1—C4—C3 | 110.2 (3) | C20—C21—H21A | 109.6 |
N1—C4—H4A | 109.6 | N4—C21—H21B | 109.6 |
C3—C4—H4A | 109.6 | C20—C21—H21B | 109.6 |
N1—C4—H4B | 109.6 | H21A—C21—H21B | 108.1 |
C3—C4—H4B | 109.6 | O9—C22—N6 | 124.3 (3) |
H4A—C4—H4B | 108.1 | O9—C22—N5 | 119.6 (3) |
N1—C5—C6 | 111.4 (3) | N6—C22—N5 | 116.1 (3) |
N1—C5—H5A | 109.3 | N6—C23—C25 | 111.0 (2) |
C6—C5—H5A | 109.3 | N6—C23—C24 | 111.6 (2) |
N1—C5—H5B | 109.3 | C25—C23—C24 | 108.3 (2) |
C6—C5—H5B | 109.3 | N6—C23—H23 | 108.7 |
H5A—C5—H5B | 108.0 | C25—C23—H23 | 108.7 |
C5—C6—H6A | 109.5 | C24—C23—H23 | 108.7 |
C5—C6—H6B | 109.5 | O10—C24—O11 | 124.5 (3) |
H6A—C6—H6B | 109.5 | O10—C24—C23 | 117.2 (2) |
C5—C6—H6C | 109.5 | O11—C24—C23 | 118.2 (2) |
H6A—C6—H6C | 109.5 | C26—C25—C30 | 118.2 (3) |
H6B—C6—H6C | 109.5 | C26—C25—C23 | 120.7 (3) |
O3—C7—N3 | 123.5 (3) | C30—C25—C23 | 121.1 (3) |
O3—C7—N2 | 120.3 (3) | C25—C26—C27 | 121.3 (3) |
N3—C7—N2 | 116.2 (3) | C25—C26—H26 | 119.3 |
O5—C8—O4 | 124.3 (3) | C27—C26—H26 | 119.3 |
O5—C8—C9 | 118.9 (2) | C28—C27—C26 | 119.8 (3) |
O4—C8—C9 | 116.8 (2) | C28—C27—H27 | 120.1 |
N3—C9—C10 | 109.4 (2) | C26—C27—H27 | 120.1 |
N3—C9—C8 | 111.4 (2) | O12—C28—C27 | 122.7 (3) |
C10—C9—C8 | 109.4 (2) | O12—C28—C29 | 117.8 (3) |
N3—C9—H9 | 108.9 | C27—C28—C29 | 119.5 (3) |
C10—C9—H9 | 108.9 | C28—C29—C30 | 120.1 (3) |
C8—C9—H9 | 108.9 | C28—C29—H29 | 119.9 |
C15—C10—C11 | 118.2 (3) | C30—C29—H29 | 119.9 |
C15—C10—C9 | 121.3 (3) | C29—C30—C25 | 121.0 (3) |
C11—C10—C9 | 120.4 (3) | C29—C30—H30 | 119.5 |
C10—C11—C12 | 121.1 (3) | C25—C30—H30 | 119.5 |
C10—C11—H11 | 119.4 | C1—N1—C4 | 121.1 (3) |
C12—C11—H11 | 119.4 | C1—N1—C5 | 119.7 (3) |
C13—C12—C11 | 119.5 (3) | C4—N1—C5 | 118.1 (2) |
C13—C12—H12 | 120.3 | C2—N2—C7 | 125.5 (2) |
C11—C12—H12 | 120.3 | C2—N2—C3 | 118.4 (2) |
O6—C13—C14 | 117.3 (3) | C7—N2—C3 | 116.1 (3) |
O6—C13—C12 | 122.5 (3) | C7—N3—C9 | 119.4 (3) |
C14—C13—C12 | 120.2 (3) | C7—N3—H3 | 120.3 |
C13—C14—C15 | 119.5 (3) | C9—N3—H3 | 120.3 |
C13—C14—H14 | 120.3 | C18—N4—C21 | 121.4 (3) |
C15—C14—H14 | 120.3 | C18—N4—C17 | 119.1 (3) |
C10—C15—C14 | 121.5 (3) | C21—N4—C17 | 118.4 (2) |
C10—C15—H15 | 119.3 | C19—N5—C22 | 125.4 (2) |
C14—C15—H15 | 119.3 | C19—N5—C20 | 117.5 (2) |
C17—C16—H16A | 109.5 | C22—N5—C20 | 117.0 (2) |
C17—C16—H16B | 109.5 | C22—N6—C23 | 119.3 (3) |
H16A—C16—H16B | 109.5 | C22—N6—H6D | 120.4 |
C17—C16—H16C | 109.5 | C23—N6—H6D | 120.4 |
H16A—C16—H16C | 109.5 | C8—O4—H4O | 133 (6) |
H16B—C16—H16C | 109.5 | C13—O6—H6 | 109.5 |
N4—C17—C16 | 111.3 (3) | C24—O10—O5 | 77.75 (16) |
N4—C17—H17A | 109.4 | C24—O10—H10O | 116 (6) |
C16—C17—H17A | 109.4 | O5—O10—H10O | 44 (6) |
N4—C17—H17B | 109.4 | C24—O11—H11O | 122 (6) |
C16—C17—H17B | 109.4 | C28—O12—H12A | 109.5 |
O1—C1—C2—O2 | −15.5 (4) | O1—C1—N1—C4 | 178.2 (3) |
N1—C1—C2—O2 | 161.3 (3) | C2—C1—N1—C4 | 1.6 (4) |
O1—C1—C2—N2 | 166.5 (3) | O1—C1—N1—C5 | 10.9 (5) |
N1—C1—C2—N2 | −16.8 (4) | C2—C1—N1—C5 | −165.7 (3) |
N2—C3—C4—N1 | −56.5 (4) | C3—C4—N1—C1 | 35.1 (4) |
O10—O5—C8—O4 | −8.8 (3) | C3—C4—N1—C5 | −157.4 (3) |
O10—O5—C8—C9 | 174.5 (3) | C6—C5—N1—C1 | 90.2 (4) |
O5—C8—C9—N3 | −39.2 (4) | C6—C5—N1—C4 | −77.4 (4) |
O4—C8—C9—N3 | 143.9 (3) | O2—C2—N2—C7 | −7.5 (5) |
O5—C8—C9—C10 | 81.9 (3) | C1—C2—N2—C7 | 170.4 (3) |
O4—C8—C9—C10 | −95.0 (3) | O2—C2—N2—C3 | 174.5 (3) |
N3—C9—C10—C15 | 59.9 (3) | C1—C2—N2—C3 | −7.6 (4) |
C8—C9—C10—C15 | −62.4 (3) | O3—C7—N2—C2 | 176.3 (3) |
N3—C9—C10—C11 | −117.6 (3) | N3—C7—N2—C2 | −3.0 (4) |
C8—C9—C10—C11 | 120.1 (3) | O3—C7—N2—C3 | −5.7 (5) |
C15—C10—C11—C12 | 0.8 (4) | N3—C7—N2—C3 | 175.0 (3) |
C9—C10—C11—C12 | 178.4 (3) | C4—C3—N2—C2 | 44.0 (4) |
C10—C11—C12—C13 | −0.3 (4) | C4—C3—N2—C7 | −134.1 (3) |
C11—C12—C13—O6 | 180.0 (3) | O3—C7—N3—C9 | 8.6 (5) |
C11—C12—C13—C14 | −0.1 (4) | N2—C7—N3—C9 | −172.2 (3) |
O6—C13—C14—C15 | 179.9 (3) | C10—C9—N3—C7 | 178.9 (3) |
C12—C13—C14—C15 | 0.0 (5) | C8—C9—N3—C7 | −60.1 (3) |
C11—C10—C15—C14 | −1.0 (4) | O7—C18—N4—C21 | 179.8 (3) |
C9—C10—C15—C14 | −178.5 (3) | C19—C18—N4—C21 | 5.3 (4) |
C13—C14—C15—C10 | 0.6 (5) | O7—C18—N4—C17 | 11.8 (5) |
O7—C18—C19—O8 | −15.6 (4) | C19—C18—N4—C17 | −162.6 (3) |
N4—C18—C19—O8 | 159.2 (3) | C20—C21—N4—C18 | 32.0 (4) |
O7—C18—C19—N5 | 166.6 (3) | C20—C21—N4—C17 | −159.9 (3) |
N4—C18—C19—N5 | −18.6 (4) | C16—C17—N4—C18 | 78.3 (4) |
N5—C20—C21—N4 | −56.3 (4) | C16—C17—N4—C21 | −90.0 (4) |
N6—C23—C24—O10 | 152.5 (3) | O8—C19—N5—C22 | −2.6 (5) |
C25—C23—C24—O10 | −85.1 (3) | C18—C19—N5—C22 | 175.0 (3) |
N6—C23—C24—O11 | −30.5 (4) | O8—C19—N5—C20 | 174.1 (3) |
C25—C23—C24—O11 | 91.8 (3) | C18—C19—N5—C20 | −8.4 (4) |
N6—C23—C25—C26 | −120.9 (3) | O9—C22—N5—C19 | 172.3 (3) |
C24—C23—C25—C26 | 116.4 (3) | N6—C22—N5—C19 | −9.2 (4) |
N6—C23—C25—C30 | 59.8 (3) | O9—C22—N5—C20 | −4.4 (4) |
C24—C23—C25—C30 | −62.9 (3) | N6—C22—N5—C20 | 174.2 (3) |
C30—C25—C26—C27 | 0.7 (4) | C21—C20—N5—C19 | 45.4 (4) |
C23—C25—C26—C27 | −178.5 (3) | C21—C20—N5—C22 | −137.7 (3) |
C25—C26—C27—C28 | −0.3 (5) | O9—C22—N6—C23 | −0.4 (5) |
C26—C27—C28—O12 | 178.8 (3) | N5—C22—N6—C23 | −178.9 (2) |
C26—C27—C28—C29 | −0.4 (5) | C25—C23—N6—C22 | 170.7 (2) |
O12—C28—C29—C30 | −178.6 (3) | C24—C23—N6—C22 | −68.5 (3) |
C27—C28—C29—C30 | 0.6 (5) | O11—C24—O10—O5 | −2.3 (3) |
C28—C29—C30—C25 | −0.1 (5) | C23—C24—O10—O5 | 174.5 (3) |
C26—C25—C30—C29 | −0.5 (5) | C8—O5—O10—C24 | 162.7 (3) |
C23—C25—C30—C29 | 178.7 (3) |
D—H···A | D—H | H···A | D···A | D—H···A |
O11—H11O···O5 | 0.86 (3) | 1.80 (4) | 2.617 (3) | 159 (9) |
O10—H10O···O4 | 0.86 (3) | 1.82 (3) | 2.678 (3) | 171 (9) |
O5—H5O···O11 | 0.86 (3) | 1.76 (3) | 2.617 (3) | 171 (8) |
O4—H4O···O10 | 0.86 (3) | 1.88 (5) | 2.678 (3) | 154 (9) |
N6—H6D···O8 | 0.86 | 1.98 | 2.637 (3) | 132 |
N3—H3···O2 | 0.86 | 1.97 | 2.636 (3) | 133 |
O6—H6···O1i | 0.82 | 1.87 | 2.682 (3) | 174 |
C12—H12···O2i | 0.93 | 2.52 | 3.438 (4) | 169 |
O12—H12A···O7ii | 0.82 | 1.88 | 2.692 (3) | 172 |
C27—H27···O8ii | 0.93 | 2.50 | 3.378 (4) | 158 |
Symmetry codes: (i) x+1/2, −y+1/2, −z+1; (ii) x+1/2, −y+5/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C15H17N3O6 |
Mr | 335.32 |
Crystal system, space group | Orthorhombic, P212121 |
Temperature (K) | 298 |
a, b, c (Å) | 11.5899 (19), 13.038 (2), 20.794 (3) |
V (Å3) | 3142.2 (9) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.11 |
Crystal size (mm) | 0.51 × 0.15 × 0.09 |
Data collection | |
Diffractometer | Bruker SMART CCD area-detector |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 16467, 3237, 2722 |
Rint | 0.040 |
(sin θ/λ)max (Å−1) | 0.602 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.044, 0.107, 1.06 |
No. of reflections | 3237 |
No. of parameters | 449 |
No. of restraints | 16 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.18, −0.16 |
Computer programs: SMART (Bruker, 1999), SAINT (Bruker, 1999), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O11—H11O···O5 | 0.86 (3) | 1.80 (4) | 2.617 (3) | 159 (9) |
O10—H10O···O4 | 0.86 (3) | 1.82 (3) | 2.678 (3) | 171 (9) |
O5—H5O···O11 | 0.86 (3) | 1.76 (3) | 2.617 (3) | 171 (8) |
O4—H4O···O10 | 0.86 (3) | 1.88 (5) | 2.678 (3) | 154 (9) |
N6—H6D···O8 | 0.86 | 1.98 | 2.637 (3) | 131.8 |
N3—H3···O2 | 0.86 | 1.97 | 2.636 (3) | 133.0 |
O6—H6···O1i | 0.82 | 1.87 | 2.682 (3) | 174.2 |
C12—H12···O2i | 0.93 | 2.52 | 3.438 (4) | 168.7 |
O12—H12A···O7ii | 0.82 | 1.88 | 2.692 (3) | 172.4 |
C27—H27···O8ii | 0.93 | 2.50 | 3.378 (4) | 158.4 |
Symmetry codes: (i) x+1/2, −y+1/2, −z+1; (ii) x+1/2, −y+5/2, −z+1. |
Acknowledgements
Financial support from the National Natural Science Foundation of China (grant No. 20572064) and the Natural Science Foundation of Shandong Province, China (grant No. Y2006B30) is gratefully acknowledged.
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Among enantiomers of 2-(4-ethyl-3-dioxo-1-piperazinyl)carboxamido]-2-(4-hydroxyphenyl)acetic acid, its (2R)-enantiomer (HO-EPCP) has been extensively investigated as a key intermediate for the synthesis of cefoperazone (Murakami et al., 1981; Albrecht et al., 1991), which is a third generation cephalosporin antibiotic (Spyker et al., 1985; Chen et al., 2009), whereas its (2S)-enantiomer was presented only one time as a chiral compound of pharmaceutical interest evaluated for enantiorecognition (De Lorenzi et al., 2001). Now we report the crystal structure of the title compound which crystallizes with two unique molecules, denoted as A & B, in the asymmetric unit (Fig. 1).
The two molecules (A and B) are linked into a dimer through classical inversion-related O—H···O hydrogen bonds (Table 1) between the carboxy groups of A and B, where the H atoms of the carboxy groups are disordered over two positions, with refined site-occupancy factors of 0.5 and 0.5. The disordered model for the carboxy group may be ascribed to the requirement of intermolecular forces (Leiserowitz, 1976; Feeder et al., 1996). Both molecules possess similar geometric parameters except for the slight differences in some bond lenghths and angles. The 2,3-dioxopiperazine ring adopts a half-chair conformation with torsion angles of -7.6 (4) and 35.1 (4)° in A, while 5.3 (4) and 45.4 (4)° in B, similar to those of -3.3 (4) and 38.6 (4)° reported previously for the related molecule 2,3-diketopiperazine (Lenstra et al., 1998). The dihedral angle between the two benzene rings belonging to A and B in the dimer is 47.32 (10)°. The intramolecular N3—H3···O2 and N6—H6D···O8 hydrogen bonds exist (Table 1) and create an R(6) ring motif (Bernstein et al., 1995) in either molecule.
The packing of the title compound is obviously stabilized by the intermolecular O—H···O and C—H···O hydrogen bonds. For the molecule A, an infinite one-dimensional helix chain (Adachi et al. 2001; Xu et al. 2003) is formed by a combination of the intermolecular O—H···O and C—H···O hydrogen bonds (Fig. 2), locally giving an R22(9) ring motif (Bernstein et al., 1995). This motif arises from atoms O6—H6 and C12—H12 in the molecule at (x, y, z), which act as hydrogen-bond donors, to atoms O1 and O2 in the neighboring molecule at (x + 1/2, -y + 1/2, -z + 1). For the molecule B, the same infinite one-dimensional helix chain is generated through a combination of the intermolecular O12—H12A···O7ii and C27—H27···O8ii [symmetry code: (ii) x + 1/2, -y + 5/2, -z + 1] hydrogen bonds. Finally, the helix chains of both molecules are alternatively linked by the interchain O—H···O hydrogen bonds to produce a two-dimensional network (Fig. 3) in the ab plane. Such helix chains of the title molecule may be significant in simulating of the life system.