metal-organic compounds
{2-[2-(Carboxymethoxy)phenoxy]acetato}[2,2′-(o-phenylenedioxy)diacetic acid]sodium 4,4′-bipyridine hemisolvate monohydrate
aCollege of Pharmacy, Liaoning University of Traditional Chinese Medicine, Dalian 116600, People's Republic of China
*Correspondence e-mail: lnzyxuliang@eyou.com
In the title compound, [Na(C10H9O6)(C10H10O6)]·0.5C10H8N2·H2O, the Na atom is eight-coordinated in an distorted dicapped-octahedral geometry by eight O atoms from a 2-(2-carboxymethoxyphenoxy)acetate (o-BDOAH) anion and a 2,2′-(o-phenylenedioxy)diacetic acid (o-BDOAH2) molecule. The uncoordinated 4,4′-bipyridine molecule is arranged around an inversion center and exhibits rotational disorder. A three-dimensional supramolecular network is built up in the crystal through O—H⋯O and O—H⋯N hydrogen bonds between the uncoordinated water molecule, the uncoordinated 4,4′-bipyridine molecule and the sodium complex molecule.
Related literature
For a related structure with o-BDOAH2 and 4,4′-bipyridine, see: Gao et al. (2006).
Experimental
Crystal data
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Refinement
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Data collection: RAPID-AUTO (Rigaku, 1998); cell RAPID-AUTO; data reduction: CrystalClear (Rigaku/MSC, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97.
Supporting information
https://doi.org/10.1107/S1600536810024797/si2266sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810024797/si2266Isup2.hkl
o-BDOAH2 was prepared by the reaction of chloroacetic acid with o-dihydroxybenzene. o-BDOAH2 (0.05 g, 2.5 mmol) and 4,4'-bipyridine (0.16 g, 1.0 mmol) were dissolved in 15 ml water, and then the pH was adjusted to about 5.5 using 0.5 M NaOH solution with stirring. The resulting solution was stand in the atmosphere for several days. Colorless block crystals of title compound were obtained.
H atoms bound to C atoms were placed in calculated positions and treated as riding on their parent atoms, with C—H = 0.93 Å (aromatic C), C—H = 0.97 Å (methene C), and with Uiso(H) = 1.2Ueq(C). Water H atoms and carboxyl H atoms were initially located in a difference Fourier map but they were treated with O—H = 0.82 - 0.85 Å, and with Uiso(H) = 1.5Ueq(O). The pyridine ring of the centrosymmetric 4,4'-bipyridine molecule is rotational disordered (approximately along the N1A···C23A/N1B···C23B axis), which are splitted into two positions with free refined occupancy of 0.682 (17) and 0.318 (17), respectively.
1,2-Phenylenedioxydiacetic acid o-BDOAH2 is a multidentate flexible ligand, which can be regarded as an excellent candidate for the construction of supramolecular architectures through the coordination or hydrogen bonding interaction (Gao et al. 2006). Herein, we report the title compound structure, synthesized by the reaction of o-BDOAH2, 4,4'-bipyridine and NaOH in an aqueous solution.
The title compound consists of a Na(o-BDOAH)(o-BDOAH2) coordinated complex, a water molecule and hemi-4,4'-bipyridine molecule. The sodium is eight-coordinated in an distorted dicapped octahedral geometry environment defined by eight oxygen atoms from a o-BDOAH molecule and a o-BDOAH~2~ molecule. The uncoordinated 4,4'-bipyridine molecule is arranged around an inversion center and exhibits a rotational disorder with occupancy of 0.682 (17) and 0.318 (17) for two splitting positions, respectively. (Figure 1, Table 1).
A three-dimensional supramolecular network is built up through O—H···O and O—H···N hydrogen bonds between the lattice water molecule, uncoordinated 4,4'-bipyridine molecule and the sodium complex (Table 2).
For a related structure with o-BDOAH2 and 4,4'-bipyridine, see: Gao et al., (2006).
Data collection: RAPID-AUTO (Rigaku, 1998); cell
RAPID-AUTO (Rigaku, 1998); data reduction: CrystalClear (Rigaku/MSC, 2002); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXL97 (Sheldrick, 2008).[Na(C10H9O6)(C10H10O6)]·0.5C10H8N2·H2O | Z = 2 |
Mr = 570.45 | F(000) = 594 |
Triclinic, P1 | Dx = 1.482 Mg m−3 |
Hall symbol: -P 1 | Mo Kα radiation, λ = 0.71073 Å |
a = 8.427 (4) Å | Cell parameters from 9090 reflections |
b = 13.135 (7) Å | θ = 3.1–27.6° |
c = 13.411 (9) Å | µ = 0.14 mm−1 |
α = 111.08 (2)° | T = 291 K |
β = 102.03 (2)° | Block, colorless |
γ = 103.17 (2)° | 0.24 × 0.23 × 0.21 mm |
V = 1277.9 (13) Å3 |
Rigaku R-AXIS RAPID diffractometer | 4457 independent reflections |
Radiation source: fine-focus sealed tube | 3497 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.022 |
ω scan | θmax = 25.0°, θmin = 3.1° |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | h = −9→10 |
Tmin = 0.968, Tmax = 0.972 | k = −15→15 |
9959 measured reflections | l = −15→15 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.066 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.213 | H-atom parameters constrained |
S = 1.14 | w = 1/[σ2(Fo2) + (0.1059P)2 + 1.3876P] where P = (Fo2 + 2Fc2)/3 |
4457 reflections | (Δ/σ)max < 0.001 |
392 parameters | Δρmax = 0.79 e Å−3 |
152 restraints | Δρmin = −0.43 e Å−3 |
[Na(C10H9O6)(C10H10O6)]·0.5C10H8N2·H2O | γ = 103.17 (2)° |
Mr = 570.45 | V = 1277.9 (13) Å3 |
Triclinic, P1 | Z = 2 |
a = 8.427 (4) Å | Mo Kα radiation |
b = 13.135 (7) Å | µ = 0.14 mm−1 |
c = 13.411 (9) Å | T = 291 K |
α = 111.08 (2)° | 0.24 × 0.23 × 0.21 mm |
β = 102.03 (2)° |
Rigaku R-AXIS RAPID diffractometer | 4457 independent reflections |
Absorption correction: multi-scan (ABSCOR; Higashi, 1995) | 3497 reflections with I > 2σ(I) |
Tmin = 0.968, Tmax = 0.972 | Rint = 0.022 |
9959 measured reflections |
R[F2 > 2σ(F2)] = 0.066 | 152 restraints |
wR(F2) = 0.213 | H-atom parameters constrained |
S = 1.14 | Δρmax = 0.79 e Å−3 |
4457 reflections | Δρmin = −0.43 e Å−3 |
392 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. 1. omit -3 50 2. eqiv $4 - x -1, -y, -z DFIX 1.485 0.015 C23A C23A_$4 C23B C23B_$4 3. SAME N1B C21B C22B C23B C24B C25B SAME N1A C21A C22A C23A C24A C25A SIMU C21A C22A C23A C24A C25A C21B C22B C23B C24B C25B SIMU N1A N1B Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | Occ. (<1) | |
N1A | 0.6188 (9) | 0.2495 (3) | 0.2549 (4) | 0.057 (3) | 0.682 (17) |
C21A | 0.5554 (11) | 0.1402 (4) | 0.2509 (3) | 0.051 (2) | 0.682 (17) |
H21A | 0.5436 | 0.1326 | 0.3156 | 0.062* | 0.682 (17) |
C22A | 0.5096 (11) | 0.0423 (3) | 0.1503 (4) | 0.0451 (19) | 0.682 (17) |
H22A | 0.4672 | −0.0309 | 0.1476 | 0.054* | 0.682 (17) |
C23A | 0.5272 (8) | 0.0536 (4) | 0.0537 (3) | 0.042 (3) | 0.682 (17) |
C24A | 0.5907 (14) | 0.1629 (6) | 0.0577 (5) | 0.050 (2) | 0.682 (17) |
H24A | 0.6024 | 0.1706 | −0.0069 | 0.060* | 0.682 (17) |
C25A | 0.6365 (14) | 0.2609 (4) | 0.1583 (6) | 0.061 (3) | 0.682 (17) |
H25A | 0.6789 | 0.3340 | 0.1610 | 0.073* | 0.682 (17) |
N1B | 0.591 (2) | 0.2514 (7) | 0.2486 (8) | 0.062 (7) | 0.318 (17) |
C21B | 0.461 (3) | 0.1518 (9) | 0.2270 (11) | 0.067 (5) | 0.318 (17) |
H21B | 0.4017 | 0.1518 | 0.2782 | 0.080* | 0.318 (17) |
C22B | 0.420 (3) | 0.0521 (7) | 0.1287 (11) | 0.056 (5) | 0.318 (17) |
H22B | 0.3333 | −0.0145 | 0.1142 | 0.067* | 0.318 (17) |
C23B | 0.509 (2) | 0.0521 (9) | 0.0521 (7) | 0.049 (8) | 0.318 (17) |
C24B | 0.6381 (16) | 0.1517 (12) | 0.0738 (10) | 0.036 (4) | 0.318 (17) |
H24B | 0.6974 | 0.1517 | 0.0225 | 0.043* | 0.318 (17) |
C25B | 0.6791 (16) | 0.2514 (10) | 0.1720 (11) | 0.029 (3) | 0.318 (17) |
H25B | 0.7658 | 0.3180 | 0.1865 | 0.034* | 0.318 (17) |
C1 | 1.2333 (5) | 0.9344 (3) | 0.3705 (3) | 0.0449 (9) | |
C2 | 1.2214 (5) | 0.9812 (3) | 0.4873 (3) | 0.0427 (9) | |
H2A | 1.3347 | 1.0083 | 0.5419 | 0.051* | |
H2B | 1.1801 | 1.0465 | 0.4995 | 0.051* | |
C3 | 1.1024 (5) | 0.9213 (3) | 0.6109 (3) | 0.0393 (8) | |
C4 | 1.1633 (5) | 1.0313 (3) | 0.6957 (3) | 0.0496 (10) | |
H4 | 1.2166 | 1.0933 | 0.6827 | 0.060* | |
C5 | 1.1456 (6) | 1.0503 (4) | 0.8009 (4) | 0.0616 (12) | |
H5 | 1.1865 | 1.1251 | 0.8580 | 0.074* | |
C6 | 1.0677 (6) | 0.9588 (4) | 0.8206 (4) | 0.0633 (12) | |
H6 | 1.0564 | 0.9718 | 0.8913 | 0.076* | |
C7 | 1.0057 (6) | 0.8471 (4) | 0.7356 (3) | 0.0537 (10) | |
H7 | 0.9524 | 0.7854 | 0.7491 | 0.064* | |
C8 | 1.0231 (5) | 0.8276 (3) | 0.6309 (3) | 0.0404 (8) | |
C9 | 0.8604 (5) | 0.6264 (3) | 0.5498 (3) | 0.0432 (9) | |
H9A | 0.7599 | 0.6441 | 0.5650 | 0.052* | |
H9B | 0.9204 | 0.6126 | 0.6111 | 0.052* | |
C10 | 0.8062 (5) | 0.5200 (3) | 0.4395 (3) | 0.0424 (9) | |
C11 | 1.4603 (5) | 0.7310 (3) | 0.4655 (3) | 0.0405 (8) | |
C12 | 1.4237 (5) | 0.6162 (3) | 0.3699 (3) | 0.0441 (9) | |
H12A | 1.4988 | 0.6235 | 0.3251 | 0.053* | |
H12B | 1.4432 | 0.5606 | 0.3987 | 0.053* | |
C13 | 1.1877 (5) | 0.4758 (3) | 0.2073 (3) | 0.0453 (9) | |
C14 | 1.2722 (7) | 0.3957 (4) | 0.1820 (4) | 0.0633 (12) | |
H14 | 1.3785 | 0.4095 | 0.2312 | 0.076* | |
C15 | 1.1982 (8) | 0.2955 (4) | 0.0837 (5) | 0.0784 (16) | |
H15 | 1.2553 | 0.2419 | 0.0665 | 0.094* | |
C16 | 1.0408 (7) | 0.2740 (4) | 0.0108 (4) | 0.0755 (16) | |
H16 | 0.9909 | 0.2051 | −0.0544 | 0.091* | |
C17 | 0.9552 (6) | 0.3544 (4) | 0.0336 (4) | 0.0629 (13) | |
H17 | 0.8508 | 0.3408 | −0.0174 | 0.076* | |
C18 | 1.0267 (5) | 0.4546 (3) | 0.1329 (3) | 0.0454 (9) | |
C19 | 0.7868 (5) | 0.5188 (4) | 0.0964 (3) | 0.0524 (11) | |
H19A | 0.7130 | 0.4413 | 0.0765 | 0.063* | |
H19B | 0.7944 | 0.5247 | 0.0274 | 0.063* | |
C20 | 0.7118 (5) | 0.6051 (4) | 0.1570 (4) | 0.0558 (11) | |
Na1 | 1.05417 (13) | 0.69107 (9) | 0.36791 (8) | 0.0184 (3) | |
O1 | 1.3113 (4) | 1.0102 (3) | 0.3415 (3) | 0.0670 (9) | |
H62 | 1.3358 | 1.0765 | 0.3903 | 0.100* | |
O2 | 1.1770 (4) | 0.8307 (2) | 0.3072 (2) | 0.0532 (7) | |
O3 | 1.1079 (3) | 0.8946 (2) | 0.5032 (2) | 0.0402 (6) | |
O4 | 0.9707 (3) | 0.7210 (2) | 0.5416 (2) | 0.0451 (6) | |
O5 | 0.8786 (4) | 0.5185 (2) | 0.3693 (2) | 0.0567 (8) | |
O6 | 0.6840 (5) | 0.4372 (2) | 0.4313 (3) | 0.0691 (10) | |
H61 | 0.6665 | 0.3817 | 0.3714 | 0.104* | |
O7 | 1.3450 (4) | 0.7679 (3) | 0.4858 (2) | 0.0601 (8) | |
O8 | 1.6201 (3) | 0.7822 (2) | 0.5237 (3) | 0.0588 (8) | |
O9 | 1.2474 (3) | 0.5785 (2) | 0.3023 (2) | 0.0503 (7) | |
O10 | 0.9534 (3) | 0.5391 (2) | 0.1663 (2) | 0.0499 (7) | |
O11 | 0.7838 (4) | 0.6794 (3) | 0.2531 (3) | 0.0636 (8) | |
O12 | 0.5598 (4) | 0.5927 (4) | 0.0985 (3) | 0.0941 (14) | |
H121 | 0.5767 | 0.5753 | 0.0368 | 0.141* | |
O13 | 0.4114 (5) | 0.7809 (3) | 0.1738 (4) | 0.0892 (12) | |
H131 | 0.4615 | 0.7313 | 0.1724 | 0.134* | |
H132 | 0.3730 | 0.8057 | 0.2284 | 0.134* |
U11 | U22 | U33 | U12 | U13 | U23 | |
N1A | 0.066 (5) | 0.043 (6) | 0.052 (6) | 0.014 (4) | 0.018 (4) | 0.014 (5) |
C21A | 0.058 (5) | 0.042 (4) | 0.041 (3) | 0.001 (3) | 0.020 (3) | 0.012 (3) |
C22A | 0.051 (5) | 0.034 (3) | 0.036 (3) | −0.002 (3) | 0.015 (3) | 0.010 (2) |
C23A | 0.049 (5) | 0.037 (6) | 0.034 (6) | 0.011 (4) | 0.018 (4) | 0.008 (5) |
C24A | 0.076 (6) | 0.034 (3) | 0.049 (4) | 0.024 (4) | 0.023 (4) | 0.023 (3) |
C25A | 0.082 (7) | 0.042 (4) | 0.062 (5) | 0.027 (4) | 0.025 (4) | 0.020 (4) |
N1B | 0.098 (13) | 0.044 (12) | 0.024 (9) | −0.010 (8) | 0.029 (8) | 0.008 (8) |
C21B | 0.097 (14) | 0.044 (8) | 0.052 (8) | 0.013 (9) | 0.034 (9) | 0.014 (6) |
C22B | 0.061 (10) | 0.044 (7) | 0.047 (8) | 0.001 (7) | 0.020 (8) | 0.012 (6) |
C23B | 0.061 (11) | 0.040 (12) | 0.043 (13) | 0.005 (9) | 0.014 (9) | 0.023 (10) |
C24B | 0.045 (8) | 0.034 (7) | 0.036 (6) | 0.021 (6) | 0.010 (5) | 0.020 (5) |
C25B | 0.044 (6) | 0.020 (5) | 0.030 (6) | 0.012 (4) | 0.009 (5) | 0.020 (4) |
C1 | 0.047 (2) | 0.033 (2) | 0.046 (2) | 0.0057 (16) | 0.0147 (17) | 0.0109 (17) |
C2 | 0.0401 (19) | 0.0312 (19) | 0.045 (2) | 0.0077 (15) | 0.0110 (16) | 0.0084 (16) |
C3 | 0.0376 (19) | 0.0364 (19) | 0.0345 (19) | 0.0144 (15) | 0.0075 (15) | 0.0059 (15) |
C4 | 0.057 (2) | 0.033 (2) | 0.046 (2) | 0.0150 (17) | 0.0147 (19) | 0.0028 (17) |
C5 | 0.075 (3) | 0.045 (2) | 0.038 (2) | 0.016 (2) | 0.015 (2) | −0.0074 (19) |
C6 | 0.074 (3) | 0.064 (3) | 0.034 (2) | 0.016 (2) | 0.019 (2) | 0.005 (2) |
C7 | 0.063 (3) | 0.054 (2) | 0.040 (2) | 0.019 (2) | 0.0191 (19) | 0.0151 (19) |
C8 | 0.043 (2) | 0.0342 (19) | 0.0324 (18) | 0.0142 (15) | 0.0088 (15) | 0.0032 (15) |
C9 | 0.054 (2) | 0.0333 (19) | 0.041 (2) | 0.0136 (16) | 0.0191 (17) | 0.0139 (16) |
C10 | 0.052 (2) | 0.034 (2) | 0.042 (2) | 0.0178 (17) | 0.0177 (18) | 0.0148 (17) |
C11 | 0.040 (2) | 0.0375 (19) | 0.0386 (19) | 0.0119 (16) | 0.0063 (16) | 0.0150 (16) |
C12 | 0.038 (2) | 0.045 (2) | 0.043 (2) | 0.0134 (16) | 0.0134 (16) | 0.0118 (17) |
C13 | 0.053 (2) | 0.039 (2) | 0.0298 (18) | 0.0097 (17) | 0.0136 (17) | 0.0017 (16) |
C14 | 0.073 (3) | 0.051 (3) | 0.053 (3) | 0.026 (2) | 0.022 (2) | 0.003 (2) |
C15 | 0.088 (4) | 0.056 (3) | 0.066 (3) | 0.029 (3) | 0.025 (3) | −0.004 (2) |
C16 | 0.082 (4) | 0.050 (3) | 0.057 (3) | 0.013 (2) | 0.028 (3) | −0.017 (2) |
C17 | 0.055 (3) | 0.063 (3) | 0.040 (2) | −0.002 (2) | 0.0141 (19) | 0.003 (2) |
C18 | 0.051 (2) | 0.041 (2) | 0.0325 (19) | 0.0070 (17) | 0.0195 (17) | 0.0044 (16) |
C19 | 0.040 (2) | 0.065 (3) | 0.033 (2) | 0.0003 (19) | 0.0008 (16) | 0.0171 (19) |
C20 | 0.033 (2) | 0.078 (3) | 0.049 (3) | 0.010 (2) | 0.0011 (18) | 0.030 (2) |
Na1 | 0.0191 (5) | 0.0129 (5) | 0.0135 (5) | 0.0036 (4) | 0.0030 (4) | −0.0026 (4) |
O1 | 0.081 (2) | 0.0409 (17) | 0.063 (2) | −0.0012 (15) | 0.0347 (17) | 0.0113 (15) |
O2 | 0.0685 (19) | 0.0348 (15) | 0.0458 (16) | 0.0087 (13) | 0.0225 (14) | 0.0088 (13) |
O3 | 0.0462 (14) | 0.0321 (13) | 0.0340 (13) | 0.0111 (11) | 0.0135 (11) | 0.0059 (11) |
O4 | 0.0557 (16) | 0.0328 (13) | 0.0371 (14) | 0.0091 (11) | 0.0181 (12) | 0.0061 (11) |
O5 | 0.075 (2) | 0.0370 (15) | 0.0499 (17) | 0.0111 (14) | 0.0299 (15) | 0.0090 (13) |
O6 | 0.094 (2) | 0.0361 (16) | 0.064 (2) | 0.0022 (16) | 0.0425 (18) | 0.0086 (14) |
O7 | 0.0496 (17) | 0.0565 (18) | 0.0506 (17) | 0.0271 (14) | 0.0010 (14) | −0.0001 (14) |
O8 | 0.0388 (15) | 0.0465 (16) | 0.0674 (19) | 0.0063 (12) | 0.0076 (14) | 0.0086 (14) |
O9 | 0.0458 (15) | 0.0449 (15) | 0.0371 (14) | 0.0177 (12) | 0.0029 (12) | −0.0031 (12) |
O10 | 0.0428 (15) | 0.0551 (17) | 0.0328 (14) | 0.0081 (12) | 0.0052 (11) | 0.0069 (12) |
O11 | 0.0488 (17) | 0.064 (2) | 0.063 (2) | 0.0190 (15) | 0.0049 (15) | 0.0179 (17) |
O12 | 0.051 (2) | 0.139 (4) | 0.069 (2) | 0.035 (2) | 0.0010 (18) | 0.026 (2) |
O13 | 0.086 (3) | 0.084 (3) | 0.109 (3) | 0.034 (2) | 0.039 (2) | 0.046 (2) |
N1A—C21A | 1.3900 | C9—H9A | 0.9700 |
N1A—C25A | 1.3900 | C9—H9B | 0.9700 |
C21A—C22A | 1.3900 | C10—O5 | 1.221 (5) |
C21A—H21A | 0.9300 | C10—O6 | 1.269 (5) |
C22A—C23A | 1.3900 | C11—O7 | 1.217 (5) |
C22A—H22A | 0.9300 | C11—O8 | 1.283 (5) |
C23A—C24A | 1.3900 | C11—C12 | 1.499 (5) |
C23A—C23Ai | 1.497 (7) | C12—O9 | 1.434 (5) |
C24A—C25A | 1.3900 | C12—H12A | 0.9700 |
C24A—H24A | 0.9300 | C12—H12B | 0.9700 |
C25A—H25A | 0.9300 | C13—O9 | 1.372 (4) |
N1B—C21B | 1.3900 | C13—C14 | 1.383 (6) |
N1B—C25B | 1.3900 | C13—C18 | 1.407 (6) |
C21B—C22B | 1.3900 | C14—C15 | 1.376 (6) |
C21B—H21B | 0.9300 | C14—H14 | 0.9300 |
C22B—C23B | 1.3900 | C15—C16 | 1.373 (8) |
C22B—H22B | 0.9300 | C15—H15 | 0.9300 |
C23B—C24B | 1.3900 | C16—C17 | 1.391 (7) |
C23B—C23Bi | 1.516 (12) | C16—H16 | 0.9300 |
C24B—C25B | 1.3900 | C17—C18 | 1.382 (6) |
C24B—H24B | 0.9300 | C17—H17 | 0.9300 |
C25B—H25B | 0.9300 | C18—O10 | 1.373 (5) |
C1—O2 | 1.227 (5) | C19—O10 | 1.421 (5) |
C1—O1 | 1.289 (5) | C19—C20 | 1.491 (7) |
C1—C2 | 1.497 (6) | C19—H19A | 0.9700 |
C2—O3 | 1.421 (5) | C19—H19B | 0.9700 |
C2—H2A | 0.9700 | C20—O11 | 1.218 (5) |
C2—H2B | 0.9700 | C20—O12 | 1.294 (5) |
C3—C4 | 1.372 (5) | Na1—O7 | 2.374 (3) |
C3—O3 | 1.373 (5) | Na1—O2 | 2.379 (3) |
C3—C8 | 1.403 (6) | Na1—O11 | 2.407 (3) |
C4—C5 | 1.387 (6) | Na1—O5 | 2.416 (3) |
C4—H4 | 0.9300 | Na1—O4 | 2.495 (3) |
C5—C6 | 1.375 (7) | Na1—O3 | 2.501 (3) |
C5—H5 | 0.9300 | Na1—O9 | 2.524 (3) |
C6—C7 | 1.387 (6) | Na1—O10 | 2.531 (3) |
C6—H6 | 0.9300 | O1—H62 | 0.8261 |
C7—C8 | 1.379 (6) | O6—H61 | 0.8239 |
C7—H7 | 0.9300 | O12—H121 | 0.8280 |
C8—O4 | 1.372 (4) | O13—H131 | 0.8502 |
C9—O4 | 1.426 (5) | O13—H132 | 0.8500 |
C9—C10 | 1.513 (5) | ||
C21A—N1A—C25A | 120.0 | H12A—C12—H12B | 108.5 |
C22A—C21A—N1A | 120.0 | O9—C13—C14 | 125.3 (4) |
C22A—C21A—H21A | 120.0 | O9—C13—C18 | 114.6 (3) |
N1A—C21A—H21A | 120.0 | C14—C13—C18 | 120.1 (4) |
C21A—C22A—C23A | 120.0 | C15—C14—C13 | 119.7 (5) |
C21A—C22A—H22A | 120.0 | C15—C14—H14 | 120.2 |
C23A—C22A—H22A | 120.0 | C13—C14—H14 | 120.2 |
C24A—C23A—C22A | 120.0 | C16—C15—C14 | 120.6 (5) |
C24A—C23A—C23Ai | 121.5 (7) | C16—C15—H15 | 119.7 |
C22A—C23A—C23Ai | 118.5 (8) | C14—C15—H15 | 119.7 |
C23A—C24A—C25A | 120.0 | C15—C16—C17 | 120.6 (4) |
C23A—C24A—H24A | 120.0 | C15—C16—H16 | 119.7 |
C25A—C24A—H24A | 120.0 | C17—C16—H16 | 119.7 |
C24A—C25A—N1A | 120.0 | C18—C17—C16 | 119.5 (4) |
C24A—C25A—H25A | 120.0 | C18—C17—H17 | 120.3 |
N1A—C25A—H25A | 120.0 | C16—C17—H17 | 120.3 |
C21B—N1B—C25B | 120.0 | O10—C18—C17 | 125.0 (4) |
N1B—C21B—C22B | 120.0 | O10—C18—C13 | 115.4 (3) |
N1B—C21B—H21B | 120.0 | C17—C18—C13 | 119.6 (4) |
C22B—C21B—H21B | 120.0 | O10—C19—C20 | 109.9 (3) |
C23B—C22B—C21B | 120.0 | O10—C19—H19A | 109.7 |
C23B—C22B—H22B | 120.0 | C20—C19—H19A | 109.7 |
C21B—C22B—H22B | 120.0 | O10—C19—H19B | 109.7 |
C24B—C23B—C22B | 120.0 | C20—C19—H19B | 109.7 |
C24B—C23B—C23Bi | 113.6 (18) | H19A—C19—H19B | 108.2 |
C22B—C23B—C23Bi | 126.1 (18) | O11—C20—O12 | 122.4 (5) |
C23B—C24B—C25B | 120.0 | O11—C20—C19 | 123.8 (4) |
C23B—C24B—H24B | 120.0 | O12—C20—C19 | 113.8 (4) |
C25B—C24B—H24B | 120.0 | O7—Na1—O2 | 78.09 (12) |
C24B—C25B—N1B | 120.0 | O7—Na1—O11 | 160.33 (12) |
C24B—C25B—H25B | 120.0 | O2—Na1—O11 | 84.79 (12) |
N1B—C25B—H25B | 120.0 | O7—Na1—O5 | 116.02 (13) |
O2—C1—O1 | 121.8 (4) | O2—Na1—O5 | 162.48 (11) |
O2—C1—C2 | 122.7 (4) | O11—Na1—O5 | 82.69 (12) |
O1—C1—C2 | 115.4 (3) | O7—Na1—O4 | 87.39 (12) |
O3—C2—C1 | 110.6 (3) | O2—Na1—O4 | 129.15 (10) |
O3—C2—H2A | 109.5 | O11—Na1—O4 | 96.11 (12) |
C1—C2—H2A | 109.5 | O5—Na1—O4 | 64.66 (10) |
O3—C2—H2B | 109.5 | O7—Na1—O3 | 72.13 (10) |
C1—C2—H2B | 109.5 | O2—Na1—O3 | 66.79 (10) |
H2A—C2—H2B | 108.1 | O11—Na1—O3 | 92.31 (11) |
C4—C3—O3 | 124.4 (4) | O5—Na1—O3 | 125.85 (11) |
C4—C3—C8 | 119.8 (4) | O4—Na1—O3 | 62.37 (9) |
O3—C3—C8 | 115.8 (3) | O7—Na1—O9 | 63.92 (10) |
C3—C4—C5 | 120.2 (4) | O2—Na1—O9 | 90.25 (11) |
C3—C4—H4 | 119.9 | O11—Na1—O9 | 126.36 (11) |
C5—C4—H4 | 119.9 | O5—Na1—O9 | 87.35 (11) |
C6—C5—C4 | 120.1 (4) | O4—Na1—O9 | 126.16 (10) |
C6—C5—H5 | 120.0 | O3—Na1—O9 | 133.82 (10) |
C4—C5—H5 | 120.0 | O7—Na1—O10 | 123.12 (11) |
C5—C6—C7 | 120.2 (4) | O2—Na1—O10 | 88.79 (11) |
C5—C6—H6 | 119.9 | O11—Na1—O10 | 65.49 (11) |
C7—C6—H6 | 119.9 | O5—Na1—O10 | 74.88 (11) |
C8—C7—C6 | 119.9 (4) | O4—Na1—O10 | 137.55 (10) |
C8—C7—H7 | 120.0 | O3—Na1—O10 | 148.93 (10) |
C6—C7—H7 | 120.0 | O9—Na1—O10 | 61.03 (9) |
O4—C8—C7 | 125.0 (4) | C1—O1—H62 | 111.3 |
O4—C8—C3 | 115.3 (3) | C1—O2—Na1 | 121.2 (3) |
C7—C8—C3 | 119.7 (3) | C3—O3—C2 | 116.6 (3) |
O4—C9—C10 | 108.7 (3) | C3—O3—Na1 | 121.5 (2) |
O4—C9—H9A | 109.9 | C2—O3—Na1 | 115.1 (2) |
C10—C9—H9A | 109.9 | C8—O4—C9 | 117.2 (3) |
O4—C9—H9B | 109.9 | C8—O4—Na1 | 122.4 (2) |
C10—C9—H9B | 109.9 | C9—O4—Na1 | 120.3 (2) |
H9A—C9—H9B | 108.3 | C10—O5—Na1 | 123.5 (2) |
O5—C10—O6 | 126.2 (4) | C10—O6—H61 | 107.1 |
O5—C10—C9 | 120.8 (3) | C11—O7—Na1 | 126.1 (3) |
O6—C10—C9 | 113.0 (3) | C13—O9—C12 | 117.2 (3) |
O7—C11—O8 | 124.7 (4) | C13—O9—Na1 | 122.5 (2) |
O7—C11—C12 | 121.4 (3) | C12—O9—Na1 | 120.0 (2) |
O8—C11—C12 | 113.8 (3) | C18—O10—C19 | 117.3 (3) |
O9—C12—C11 | 107.5 (3) | C18—O10—Na1 | 121.9 (2) |
O9—C12—H12A | 110.2 | C19—O10—Na1 | 117.8 (2) |
C11—C12—H12A | 110.2 | C20—O11—Na1 | 122.4 (3) |
O9—C12—H12B | 110.2 | C20—O12—H121 | 97.1 |
C11—C12—H12B | 110.2 | H131—O13—H132 | 117.5 |
Symmetry code: (i) −x+1, −y, −z. |
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H62···O8ii | 0.83 | 1.70 | 2.517 (4) | 173 |
O6—H61···N1B | 0.82 | 1.76 | 2.568 (7) | 168 |
O6—H61···N1A | 0.82 | 1.76 | 2.573 (5) | 171 |
O13—H132···O2iii | 0.85 | 2.16 | 2.958 (5) | 156 |
Symmetry codes: (ii) −x+3, −y+2, −z+1; (iii) x−1, y, z. |
Experimental details
Crystal data | |
Chemical formula | [Na(C10H9O6)(C10H10O6)]·0.5C10H8N2·H2O |
Mr | 570.45 |
Crystal system, space group | Triclinic, P1 |
Temperature (K) | 291 |
a, b, c (Å) | 8.427 (4), 13.135 (7), 13.411 (9) |
α, β, γ (°) | 111.08 (2), 102.03 (2), 103.17 (2) |
V (Å3) | 1277.9 (13) |
Z | 2 |
Radiation type | Mo Kα |
µ (mm−1) | 0.14 |
Crystal size (mm) | 0.24 × 0.23 × 0.21 |
Data collection | |
Diffractometer | Rigaku R-AXIS RAPID |
Absorption correction | Multi-scan (ABSCOR; Higashi, 1995) |
Tmin, Tmax | 0.968, 0.972 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 9959, 4457, 3497 |
Rint | 0.022 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.066, 0.213, 1.14 |
No. of reflections | 4457 |
No. of parameters | 392 |
No. of restraints | 152 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.79, −0.43 |
Computer programs: RAPID-AUTO (Rigaku, 1998), CrystalClear (Rigaku/MSC, 2002), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), SHELXTL (Sheldrick, 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
O1—H62···O8i | 0.83 | 1.70 | 2.517 (4) | 172.5 |
O6—H61···N1B | 0.82 | 1.76 | 2.568 (7) | 168.3 |
O6—H61···N1A | 0.82 | 1.76 | 2.573 (5) | 170.7 |
O13—H132···O2ii | 0.85 | 2.16 | 2.958 (5) | 155.7 |
Symmetry codes: (i) −x+3, −y+2, −z+1; (ii) x−1, y, z. |
Acknowledgements
The authors thank Liaoning University of Traditional Chinese Medicine for supporting this study.
References
Gao, J.-S., Hou, G.-F., Yu, Y.-H., Hou, Y.-J. & Yan, P.-F. (2006). Acta Cryst. E62, m2913–m2915. Web of Science CSD CrossRef IUCr Journals Google Scholar
Higashi, T. (1995). ABSCOR. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku (1998). RAPID-AUTO. Rigaku Corporation, Tokyo, Japan. Google Scholar
Rigaku/MSC (2002). CrystalClear. Rigaku/MSC Inc., The Woodlands, Texas, USA. Google Scholar
Sheldrick, G. M. (2008). Acta Cryst. A64, 112–122. Web of Science CrossRef CAS IUCr Journals Google Scholar
This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
1,2-Phenylenedioxydiacetic acid o-BDOAH2 is a multidentate flexible ligand, which can be regarded as an excellent candidate for the construction of supramolecular architectures through the coordination or hydrogen bonding interaction (Gao et al. 2006). Herein, we report the title compound structure, synthesized by the reaction of o-BDOAH2, 4,4'-bipyridine and NaOH in an aqueous solution.
The title compound consists of a Na(o-BDOAH)(o-BDOAH2) coordinated complex, a water molecule and hemi-4,4'-bipyridine molecule. The sodium is eight-coordinated in an distorted dicapped octahedral geometry environment defined by eight oxygen atoms from a o-BDOAH molecule and a o-BDOAH~2~ molecule. The uncoordinated 4,4'-bipyridine molecule is arranged around an inversion center and exhibits a rotational disorder with occupancy of 0.682 (17) and 0.318 (17) for two splitting positions, respectively. (Figure 1, Table 1).
A three-dimensional supramolecular network is built up through O—H···O and O—H···N hydrogen bonds between the lattice water molecule, uncoordinated 4,4'-bipyridine molecule and the sodium complex (Table 2).