organic compounds
3-(2-Amino-5-nitroanilino)-5,5-dimethylcyclohex-2-en-1-one 0.25-hydrate
aSchool of Industrial Technology, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia, and bX-ray Crystallography Unit, School of Physics, Universiti Sains Malaysia, 11800 USM, Penang, Malaysia
*Correspondence e-mail: hkfun@usm.my
The 14H17N3O3·0.25H2O, comprises two independent organic molecules and a water molecule lying on a crystallographic twofold rotation axis with 50% site occupancy. In both independent molecules, the cyclohexene rings adopt envelope conformations but superposition of the two molecules shows that the flap atoms point in opposite directions. In the crystal, N—H⋯O and C—H⋯O hydrogen bonds interconnect adjacent molecules into a three-dimensional network. Weak intermolecular π–π aromatic stacking interactions [centroid–centroid distances = 3.4985 (9) and 3.6630 (9) Å] are also observed.
of the title compound, CRelated literature
For general background to (2-aminophenyl)aminocyclohexene derivatives, see: Cortés et al. (2004); Tonkikh et al. (2004). For ring conformations and puckering analysis, see: Cremer & Pople (1975). For related structures, see: Ghalib et al. (2010); Mehdi et al. (2010). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: SHELXTL; software used to prepare material for publication: SHELXTL and PLATON (Spek, 2009).
Supporting information
https://doi.org/10.1107/S1600536810033933/ci5160sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810033933/ci5160Isup2.hkl
A mixture of 4-nitro o-phenylenediamine (0.153 g) and dimedone (0.140 g) in a 1:1 molar ratio was refluxed in a mixture of acetic acid and ethanol (1:1 v/v) for 3 h. The solid settled in the reaction mixture was filtered and crystallized in ethanol to furnish orange-coloured single crystals of the title compound (100 mg, m.p. 481 K). The melting point was taken using the Thermo Fisher digital melting point apparatus of IA9000 series.
H atoms bound to O and N atoms were located in a difference Fourier map and refined freely [O–H = 0.83 (2) Å, range of N–H = 0.88 (2)–0.91 (2) Å]. The remaining H atoms were placed in their calculated positions, with C–H = 0.93–0.97 Å, and refined using a riding model, with Uiso = 1.2 or 1.5 Ueq(C). A rotating group model was applied to the methyl groups.
In the recent past many (2-aminophenyl)aminocyclohexene derivatives have been prepared by different methods (Tonkikh et al., 2004; Cortés et al., 2004). Recently we have reported the synthesis of 1,3,3-trimethyl-1,2,3,4-tetrahydropyrido[1,2-a]benzimidazol-1-ol by the reaction of dimedone with orthophenylenediamine in acetic acid and ethanol (Mehdi et al., 2010). In this paper we report the synthesis and
of the title compound by the reaction of dimedone with 4-nitro o-phenylenediamine in the presence of acetic acid and ethanol.The θ = 126.3 (2)° and φ = 295.3 (3)° for molecule A and Q = 0.448 (2) Å, θ = 51.6 (2)° and φ = 122.2 (3)° for molecule B. Atoms C9A and C9B are the flap atoms of C7A-C12A and C7B-C12B cyclohexene rings, respectively, deviating from the mean planes formed through the remaining five atoms by -0.6196 (17) and 0.6286 (15) Å, respectively. The superposition of the non-H atoms of molecules A and B (Fig. 2) using XP in SHELXTL (Sheldrick, 2008) shows that the geometries of the two cyclohexene rings are different, with flap atoms in opposite directions. The bond lengths and angles are comparable to those observed in related structures (Ghalib et al., 2010; Mehdi et al., 2010).
of the title compound comprises of two 3-[(2-amino-5-nitrophenyl)amino]-5,5-dimethylcyclohex-2-enone molecules (A and B) and half of a water molecule (Fig. 1). The water molecule lies on a crystallographic twofold rotation axis and the other half of the molecule is generated by the (-x, y, 1/2-z). In both molecules, the cyclohexene rings (C7A-C12A and C7B-C12B) adopt envelope conformations. The puckering parameters are Q = 0.443 (3) Å,In the
adjacent molecules are interconnected into a three-dimensional network through N1A—H1NA···O1B, N3A—H2NA···O1A, N3A—H3NA···O2B, N1B—H1NB···O1W, N3B—H2NB···O1B, N3B—H3NB···O1A, C8A—H8AA···O2B, C8B—H8BA···O1W hydrogen bonds (Table 1). The is further stabilized by intermolecular aromatic stacking interactions with Cg1···Cg1* = 3.6630 (19) Å and Cg2···Cg2$ 3.4985 (9) Å [symmetry codes: (*) -x, y, 3/2-z; ($) 1/2-x, 1/2-y, -z] where Cg1 and Cg2 are centroids of the C1A-C6A and C1B-C6B benzene rings, respectively.For general background to (2-aminophenyl)aminocyclohexene derivatives, see: Cortés et al. (2004); Tonkikh et al. (2004). For ring conformations and puckering analysis, see: Cremer & Pople (1975). For related structures, see: Ghalib et al. (2010); Mehdi et al. (2010). For the stability of the temperature controller used in the data collection, see: Cosier & Glazer (1986).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: SHELXTL (Sheldrick, 2008); software used to prepare material for publication: SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).Fig. 1. The asymmetric unit of the title compound, showing 50% probability displacement ellipsoids for non-H atoms and the atom-numbering scheme. | |
Fig. 2. Fit of molecule A (dashed lines) on molecule B (solid lines). H atoms have been omitted for clarity. | |
Fig. 3. The crystal structure of the title compound, viewed down the b axis. H atoms not involved in hydrogen bonds (dashed lines) have been omitted for clarity. |
C14H17N3O3·0.25H2O | F(000) = 2376 |
Mr = 279.81 | Dx = 1.348 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 6071 reflections |
a = 18.9043 (1) Å | θ = 2.2–24.2° |
b = 16.7048 (1) Å | µ = 0.10 mm−1 |
c = 17.8806 (2) Å | T = 100 K |
β = 102.443 (1)° | Needle, orange |
V = 5513.93 (8) Å3 | 0.36 × 0.10 × 0.10 mm |
Z = 16 |
Bruker SMART APEXII CCD area-detector diffractometer | 8086 independent reflections |
Radiation source: fine-focus sealed tube | 5448 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.072 |
φ and ω scans | θmax = 30.1°, θmin = 1.6° |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | h = −26→26 |
Tmin = 0.966, Tmax = 0.991 | k = −23→23 |
58072 measured reflections | l = −25→25 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.053 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.135 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | w = 1/[σ2(Fo2) + (0.0547P)2 + 2.5234P] where P = (Fo2 + 2Fc2)/3 |
8086 reflections | (Δ/σ)max = 0.001 |
398 parameters | Δρmax = 0.25 e Å−3 |
0 restraints | Δρmin = −0.28 e Å−3 |
C14H17N3O3·0.25H2O | V = 5513.93 (8) Å3 |
Mr = 279.81 | Z = 16 |
Monoclinic, C2/c | Mo Kα radiation |
a = 18.9043 (1) Å | µ = 0.10 mm−1 |
b = 16.7048 (1) Å | T = 100 K |
c = 17.8806 (2) Å | 0.36 × 0.10 × 0.10 mm |
β = 102.443 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 8086 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2009) | 5448 reflections with I > 2σ(I) |
Tmin = 0.966, Tmax = 0.991 | Rint = 0.072 |
58072 measured reflections |
R[F2 > 2σ(F2)] = 0.053 | 0 restraints |
wR(F2) = 0.135 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.06 | Δρmax = 0.25 e Å−3 |
8086 reflections | Δρmin = −0.28 e Å−3 |
398 parameters |
Experimental. The crystal was placed in the cold stream of an Oxford Cryosystems Cobra open-flow nitrogen cryostat (Cosier & Glazer, 1986) operating at 100.0 (1)K. |
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1A | 0.10407 (6) | 0.88026 (7) | 1.18606 (6) | 0.0250 (2) | |
O2A | −0.00894 (8) | 0.63989 (8) | 0.87992 (10) | 0.0560 (4) | |
O3A | −0.10784 (7) | 0.66814 (8) | 0.79713 (7) | 0.0428 (3) | |
N1A | 0.12683 (7) | 0.89926 (8) | 0.92807 (7) | 0.0233 (3) | |
N2A | −0.04981 (8) | 0.68814 (9) | 0.83987 (9) | 0.0345 (3) | |
N3A | 0.02428 (8) | 1.01243 (9) | 0.86062 (9) | 0.0296 (3) | |
C1A | 0.03700 (8) | 0.79493 (10) | 0.88679 (9) | 0.0247 (3) | |
H1AA | 0.0693 | 0.7567 | 0.9120 | 0.030* | |
C2A | −0.03046 (9) | 0.77211 (10) | 0.84420 (9) | 0.0261 (3) | |
C3A | −0.07831 (8) | 0.82840 (10) | 0.80490 (9) | 0.0263 (3) | |
H3AA | −0.1221 | 0.8121 | 0.7742 | 0.032* | |
C4A | −0.06102 (8) | 0.90791 (10) | 0.81135 (9) | 0.0260 (3) | |
H4AA | −0.0940 | 0.9455 | 0.7862 | 0.031* | |
C5A | 0.00592 (8) | 0.93374 (9) | 0.85545 (8) | 0.0226 (3) | |
C6A | 0.05544 (8) | 0.87464 (9) | 0.89116 (8) | 0.0213 (3) | |
C7A | 0.15228 (8) | 0.90426 (9) | 1.00454 (8) | 0.0211 (3) | |
C8A | 0.22892 (8) | 0.93365 (10) | 1.02831 (9) | 0.0240 (3) | |
H8AA | 0.2287 | 0.9917 | 1.0291 | 0.029* | |
H8AB | 0.2557 | 0.9168 | 0.9905 | 0.029* | |
C9A | 0.26804 (8) | 0.90297 (10) | 1.10715 (9) | 0.0237 (3) | |
C10A | 0.21925 (8) | 0.91886 (10) | 1.16357 (9) | 0.0264 (3) | |
H10A | 0.2395 | 0.8914 | 1.2112 | 0.032* | |
H10B | 0.2201 | 0.9758 | 1.1745 | 0.032* | |
C11A | 0.14128 (8) | 0.89301 (9) | 1.13669 (9) | 0.0219 (3) | |
C12A | 0.11152 (8) | 0.88643 (9) | 1.05722 (8) | 0.0219 (3) | |
H12A | 0.0638 | 0.8698 | 1.0405 | 0.026* | |
C13A | 0.33996 (9) | 0.94785 (11) | 1.13176 (10) | 0.0305 (4) | |
H13A | 0.3308 | 1.0043 | 1.1327 | 0.046* | |
H13B | 0.3701 | 0.9370 | 1.0960 | 0.046* | |
H13C | 0.3641 | 0.9304 | 1.1819 | 0.046* | |
C14A | 0.28313 (9) | 0.81308 (10) | 1.10315 (10) | 0.0324 (4) | |
H14A | 0.3104 | 0.7951 | 1.1519 | 0.049* | |
H14B | 0.3104 | 0.8034 | 1.0645 | 0.049* | |
H14C | 0.2381 | 0.7845 | 1.0905 | 0.049* | |
O1B | 0.23010 (6) | 0.05262 (7) | 0.34053 (6) | 0.0273 (3) | |
O2B | 0.12655 (7) | 0.09396 (7) | 0.01137 (7) | 0.0373 (3) | |
O3B | 0.06840 (7) | 0.19146 (8) | −0.05509 (7) | 0.0393 (3) | |
N1B | 0.34019 (7) | 0.22183 (8) | 0.18568 (8) | 0.0239 (3) | |
N2B | 0.11744 (8) | 0.16604 (9) | −0.00325 (8) | 0.0299 (3) | |
N3B | 0.31623 (8) | 0.38637 (9) | 0.15638 (8) | 0.0262 (3) | |
C1B | 0.22746 (8) | 0.19536 (10) | 0.09317 (9) | 0.0247 (3) | |
H1BA | 0.2346 | 0.1407 | 0.1010 | 0.030* | |
C2B | 0.16734 (8) | 0.22303 (10) | 0.04083 (9) | 0.0250 (3) | |
C3B | 0.15569 (9) | 0.30448 (10) | 0.02732 (9) | 0.0276 (3) | |
H3BA | 0.1150 | 0.3224 | −0.0076 | 0.033* | |
C4B | 0.20513 (9) | 0.35776 (10) | 0.06638 (9) | 0.0264 (3) | |
H4BA | 0.1980 | 0.4122 | 0.0569 | 0.032* | |
C5B | 0.26681 (8) | 0.33224 (9) | 0.12075 (8) | 0.0234 (3) | |
C6B | 0.27680 (8) | 0.24929 (9) | 0.13365 (9) | 0.0231 (3) | |
C7B | 0.34175 (8) | 0.16652 (9) | 0.24196 (9) | 0.0220 (3) | |
C8B | 0.41600 (8) | 0.13787 (9) | 0.28068 (9) | 0.0243 (3) | |
H8BA | 0.4500 | 0.1816 | 0.2823 | 0.029* | |
H8BB | 0.4304 | 0.0954 | 0.2501 | 0.029* | |
C9B | 0.42129 (8) | 0.10673 (9) | 0.36246 (9) | 0.0243 (3) | |
C10B | 0.35921 (9) | 0.04699 (9) | 0.36023 (9) | 0.0259 (3) | |
H10C | 0.3693 | −0.0011 | 0.3339 | 0.031* | |
H10D | 0.3578 | 0.0321 | 0.4123 | 0.031* | |
C11B | 0.28568 (8) | 0.07847 (9) | 0.32102 (9) | 0.0237 (3) | |
C12B | 0.28102 (8) | 0.13614 (10) | 0.26177 (9) | 0.0252 (3) | |
H12B | 0.2357 | 0.1537 | 0.2358 | 0.030* | |
C13B | 0.41499 (10) | 0.17608 (11) | 0.41657 (10) | 0.0330 (4) | |
H13D | 0.4195 | 0.1559 | 0.4677 | 0.049* | |
H13E | 0.3687 | 0.2016 | 0.4002 | 0.049* | |
H13F | 0.4528 | 0.2142 | 0.4158 | 0.049* | |
C14B | 0.49440 (9) | 0.06534 (11) | 0.38949 (10) | 0.0324 (4) | |
H14D | 0.4997 | 0.0491 | 0.4419 | 0.049* | |
H14E | 0.5326 | 0.1018 | 0.3853 | 0.049* | |
H14F | 0.4968 | 0.0191 | 0.3582 | 0.049* | |
O1W | 0.0000 | 0.80007 (11) | 0.2500 | 0.0446 (5) | |
H1W1 | 0.0200 (13) | 0.8311 (14) | 0.2244 (13) | 0.055 (7)* | |
H1NA | 0.1562 (11) | 0.9117 (12) | 0.8972 (11) | 0.037 (5)* | |
H2NA | −0.0127 (12) | 1.0468 (13) | 0.8460 (12) | 0.047 (6)* | |
H3NA | 0.0637 (11) | 1.0285 (12) | 0.8965 (11) | 0.037 (5)* | |
H1NB | 0.3824 (12) | 0.2453 (13) | 0.1855 (12) | 0.047 (6)* | |
H2NB | 0.3020 (11) | 0.4365 (13) | 0.1504 (11) | 0.035 (5)* | |
H3NB | 0.3455 (10) | 0.3735 (11) | 0.1998 (11) | 0.030 (5)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1A | 0.0203 (5) | 0.0317 (6) | 0.0243 (5) | −0.0009 (4) | 0.0073 (4) | 0.0030 (4) |
O2A | 0.0471 (9) | 0.0294 (8) | 0.0832 (11) | 0.0007 (7) | −0.0043 (8) | 0.0026 (7) |
O3A | 0.0422 (8) | 0.0446 (8) | 0.0392 (7) | −0.0179 (6) | 0.0038 (6) | −0.0100 (6) |
N1A | 0.0159 (6) | 0.0323 (7) | 0.0212 (6) | −0.0010 (5) | 0.0031 (5) | 0.0040 (5) |
N2A | 0.0322 (8) | 0.0323 (8) | 0.0385 (8) | −0.0055 (6) | 0.0067 (7) | −0.0054 (6) |
N3A | 0.0222 (7) | 0.0276 (8) | 0.0365 (8) | 0.0030 (6) | 0.0010 (6) | 0.0021 (6) |
C1A | 0.0213 (8) | 0.0273 (8) | 0.0256 (8) | 0.0027 (6) | 0.0056 (6) | 0.0010 (6) |
C2A | 0.0235 (8) | 0.0288 (8) | 0.0266 (8) | −0.0029 (6) | 0.0069 (6) | −0.0049 (6) |
C3A | 0.0180 (7) | 0.0374 (9) | 0.0228 (8) | −0.0009 (6) | 0.0026 (6) | −0.0036 (6) |
C4A | 0.0199 (8) | 0.0328 (9) | 0.0242 (8) | 0.0054 (6) | 0.0026 (6) | 0.0026 (6) |
C5A | 0.0190 (7) | 0.0287 (8) | 0.0203 (7) | 0.0017 (6) | 0.0049 (6) | 0.0015 (6) |
C6A | 0.0162 (7) | 0.0292 (8) | 0.0183 (7) | −0.0001 (6) | 0.0031 (5) | −0.0004 (6) |
C7A | 0.0167 (7) | 0.0223 (7) | 0.0234 (7) | 0.0013 (6) | 0.0022 (6) | 0.0017 (6) |
C8A | 0.0169 (7) | 0.0301 (8) | 0.0252 (8) | −0.0026 (6) | 0.0050 (6) | 0.0022 (6) |
C9A | 0.0168 (7) | 0.0306 (8) | 0.0229 (7) | −0.0009 (6) | 0.0025 (6) | 0.0020 (6) |
C10A | 0.0196 (8) | 0.0359 (9) | 0.0234 (8) | −0.0052 (7) | 0.0039 (6) | −0.0014 (6) |
C11A | 0.0183 (7) | 0.0221 (8) | 0.0256 (8) | 0.0019 (6) | 0.0054 (6) | 0.0019 (6) |
C12A | 0.0151 (7) | 0.0243 (8) | 0.0259 (8) | −0.0010 (6) | 0.0035 (6) | 0.0017 (6) |
C13A | 0.0175 (8) | 0.0447 (10) | 0.0277 (8) | −0.0059 (7) | 0.0016 (6) | −0.0023 (7) |
C14A | 0.0227 (8) | 0.0339 (10) | 0.0394 (10) | 0.0035 (7) | 0.0038 (7) | 0.0039 (7) |
O1B | 0.0259 (6) | 0.0278 (6) | 0.0315 (6) | −0.0050 (5) | 0.0136 (5) | −0.0037 (5) |
O2B | 0.0386 (7) | 0.0312 (7) | 0.0390 (7) | −0.0043 (5) | 0.0018 (6) | 0.0000 (5) |
O3B | 0.0266 (7) | 0.0449 (8) | 0.0406 (7) | 0.0076 (6) | −0.0053 (5) | −0.0044 (6) |
N1B | 0.0192 (7) | 0.0240 (7) | 0.0290 (7) | −0.0004 (5) | 0.0064 (5) | 0.0032 (5) |
N2B | 0.0255 (7) | 0.0338 (8) | 0.0303 (7) | 0.0007 (6) | 0.0058 (6) | −0.0026 (6) |
N3B | 0.0298 (8) | 0.0226 (7) | 0.0254 (7) | 0.0016 (6) | 0.0042 (6) | 0.0010 (5) |
C1B | 0.0250 (8) | 0.0233 (8) | 0.0273 (8) | 0.0023 (6) | 0.0090 (6) | 0.0003 (6) |
C2B | 0.0223 (8) | 0.0306 (8) | 0.0228 (8) | 0.0006 (6) | 0.0066 (6) | −0.0023 (6) |
C3B | 0.0264 (8) | 0.0332 (9) | 0.0236 (8) | 0.0072 (7) | 0.0060 (6) | 0.0010 (6) |
C4B | 0.0307 (9) | 0.0249 (8) | 0.0246 (8) | 0.0059 (7) | 0.0081 (7) | 0.0015 (6) |
C5B | 0.0251 (8) | 0.0249 (8) | 0.0219 (7) | 0.0014 (6) | 0.0090 (6) | −0.0011 (6) |
C6B | 0.0211 (7) | 0.0259 (8) | 0.0233 (7) | 0.0026 (6) | 0.0068 (6) | 0.0008 (6) |
C7B | 0.0216 (7) | 0.0196 (7) | 0.0255 (8) | 0.0014 (6) | 0.0066 (6) | −0.0004 (6) |
C8B | 0.0188 (7) | 0.0232 (8) | 0.0319 (8) | −0.0004 (6) | 0.0075 (6) | 0.0021 (6) |
C9B | 0.0218 (8) | 0.0217 (8) | 0.0291 (8) | 0.0004 (6) | 0.0054 (6) | 0.0024 (6) |
C10B | 0.0263 (8) | 0.0224 (8) | 0.0301 (8) | −0.0015 (6) | 0.0082 (7) | 0.0012 (6) |
C11B | 0.0232 (8) | 0.0229 (8) | 0.0266 (8) | −0.0034 (6) | 0.0090 (6) | −0.0058 (6) |
C12B | 0.0189 (7) | 0.0277 (8) | 0.0295 (8) | 0.0015 (6) | 0.0065 (6) | 0.0015 (6) |
C13B | 0.0299 (9) | 0.0326 (9) | 0.0357 (9) | −0.0025 (7) | 0.0055 (7) | −0.0053 (7) |
C14B | 0.0252 (9) | 0.0332 (9) | 0.0382 (10) | 0.0021 (7) | 0.0054 (7) | 0.0070 (7) |
O1W | 0.0529 (12) | 0.0203 (9) | 0.0751 (15) | 0.000 | 0.0454 (12) | 0.000 |
O1A—C11A | 1.2597 (17) | O2B—N2B | 1.2363 (18) |
O2A—N2A | 1.233 (2) | O3B—N2B | 1.2363 (18) |
O3A—N2A | 1.2400 (19) | N1B—C7B | 1.3617 (19) |
N1A—C7A | 1.3507 (19) | N1B—C6B | 1.425 (2) |
N1A—C6A | 1.4290 (19) | N1B—H1NB | 0.89 (2) |
N1A—H1NA | 0.89 (2) | N2B—C2B | 1.448 (2) |
N2A—C2A | 1.448 (2) | N3B—C5B | 1.357 (2) |
N3A—C5A | 1.358 (2) | N3B—H2NB | 0.88 (2) |
N3A—H2NA | 0.90 (2) | N3B—H3NB | 0.88 (2) |
N3A—H3NA | 0.91 (2) | C1B—C6B | 1.384 (2) |
C1A—C6A | 1.374 (2) | C1B—C2B | 1.387 (2) |
C1A—C2A | 1.390 (2) | C1B—H1BA | 0.93 |
C1A—H1AA | 0.93 | C2B—C3B | 1.391 (2) |
C2A—C3A | 1.387 (2) | C3B—C4B | 1.368 (2) |
C3A—C4A | 1.367 (2) | C3B—H3BA | 0.93 |
C3A—H3AA | 0.93 | C4B—C5B | 1.413 (2) |
C4A—C5A | 1.407 (2) | C4B—H4BA | 0.93 |
C4A—H4AA | 0.93 | C5B—C6B | 1.411 (2) |
C5A—C6A | 1.415 (2) | C7B—C12B | 1.370 (2) |
C7A—C12A | 1.372 (2) | C7B—C8B | 1.503 (2) |
C7A—C8A | 1.502 (2) | C8B—C9B | 1.535 (2) |
C8A—C9A | 1.532 (2) | C8B—H8BA | 0.97 |
C8A—H8AA | 0.97 | C8B—H8BB | 0.97 |
C8A—H8AB | 0.97 | C9B—C14B | 1.528 (2) |
C9A—C10A | 1.530 (2) | C9B—C13B | 1.530 (2) |
C9A—C13A | 1.532 (2) | C9B—C10B | 1.534 (2) |
C9A—C14A | 1.533 (2) | C10B—C11B | 1.510 (2) |
C10A—C11A | 1.511 (2) | C10B—H10C | 0.97 |
C10A—H10A | 0.97 | C10B—H10D | 0.97 |
C10A—H10B | 0.97 | C11B—C12B | 1.420 (2) |
C11A—C12A | 1.415 (2) | C12B—H12B | 0.93 |
C12A—H12A | 0.93 | C13B—H13D | 0.96 |
C13A—H13A | 0.96 | C13B—H13E | 0.96 |
C13A—H13B | 0.96 | C13B—H13F | 0.96 |
C13A—H13C | 0.96 | C14B—H14D | 0.96 |
C14A—H14A | 0.96 | C14B—H14E | 0.96 |
C14A—H14B | 0.96 | C14B—H14F | 0.96 |
C14A—H14C | 0.96 | O1W—H1W1 | 0.83 (2) |
O1B—C11B | 1.2531 (18) | ||
C7A—N1A—C6A | 125.48 (13) | C7B—N1B—C6B | 125.59 (13) |
C7A—N1A—H1NA | 118.7 (13) | C7B—N1B—H1NB | 115.2 (14) |
C6A—N1A—H1NA | 115.8 (13) | C6B—N1B—H1NB | 119.0 (14) |
O2A—N2A—O3A | 122.83 (16) | O2B—N2B—O3B | 122.74 (14) |
O2A—N2A—C2A | 118.86 (15) | O2B—N2B—C2B | 118.71 (14) |
O3A—N2A—C2A | 118.29 (15) | O3B—N2B—C2B | 118.52 (14) |
C5A—N3A—H2NA | 115.3 (14) | C5B—N3B—H2NB | 114.6 (13) |
C5A—N3A—H3NA | 119.4 (12) | C5B—N3B—H3NB | 119.5 (12) |
H2NA—N3A—H3NA | 118.9 (19) | H2NB—N3B—H3NB | 117.3 (18) |
C6A—C1A—C2A | 119.23 (15) | C6B—C1B—C2B | 119.88 (15) |
C6A—C1A—H1AA | 120.4 | C6B—C1B—H1BA | 120.1 |
C2A—C1A—H1AA | 120.4 | C2B—C1B—H1BA | 120.1 |
C3A—C2A—C1A | 120.86 (15) | C1B—C2B—C3B | 121.28 (15) |
C3A—C2A—N2A | 120.02 (15) | C1B—C2B—N2B | 119.42 (15) |
C1A—C2A—N2A | 119.11 (15) | C3B—C2B—N2B | 119.23 (14) |
C4A—C3A—C2A | 119.89 (15) | C4B—C3B—C2B | 118.85 (15) |
C4A—C3A—H3AA | 120.1 | C4B—C3B—H3BA | 120.6 |
C2A—C3A—H3AA | 120.1 | C2B—C3B—H3BA | 120.6 |
C3A—C4A—C5A | 121.00 (15) | C3B—C4B—C5B | 121.77 (15) |
C3A—C4A—H4AA | 119.5 | C3B—C4B—H4BA | 119.1 |
C5A—C4A—H4AA | 119.5 | C5B—C4B—H4BA | 119.1 |
N3A—C5A—C4A | 121.40 (15) | N3B—C5B—C6B | 121.57 (15) |
N3A—C5A—C6A | 120.68 (14) | N3B—C5B—C4B | 120.31 (15) |
C4A—C5A—C6A | 117.83 (14) | C6B—C5B—C4B | 118.05 (14) |
C1A—C6A—C5A | 121.02 (14) | C1B—C6B—C5B | 120.16 (14) |
C1A—C6A—N1A | 120.51 (14) | C1B—C6B—N1B | 120.61 (14) |
C5A—C6A—N1A | 118.36 (14) | C5B—C6B—N1B | 119.14 (14) |
N1A—C7A—C12A | 123.45 (14) | N1B—C7B—C12B | 123.83 (14) |
N1A—C7A—C8A | 114.73 (13) | N1B—C7B—C8B | 115.19 (13) |
C12A—C7A—C8A | 121.79 (13) | C12B—C7B—C8B | 120.95 (14) |
C7A—C8A—C9A | 113.34 (12) | C7B—C8B—C9B | 114.16 (12) |
C7A—C8A—H8AA | 108.9 | C7B—C8B—H8BA | 108.7 |
C9A—C8A—H8AA | 108.9 | C9B—C8B—H8BA | 108.7 |
C7A—C8A—H8AB | 108.9 | C7B—C8B—H8BB | 108.7 |
C9A—C8A—H8AB | 108.9 | C9B—C8B—H8BB | 108.7 |
H8AA—C8A—H8AB | 107.7 | H8BA—C8B—H8BB | 107.6 |
C10A—C9A—C13A | 110.46 (13) | C14B—C9B—C13B | 109.32 (14) |
C10A—C9A—C8A | 107.98 (12) | C14B—C9B—C10B | 110.40 (13) |
C13A—C9A—C8A | 108.86 (13) | C13B—C9B—C10B | 110.22 (13) |
C10A—C9A—C14A | 110.21 (13) | C14B—C9B—C8B | 108.88 (13) |
C13A—C9A—C14A | 109.28 (13) | C13B—C9B—C8B | 110.36 (13) |
C8A—C9A—C14A | 110.03 (13) | C10B—C9B—C8B | 107.65 (13) |
C11A—C10A—C9A | 115.21 (13) | C11B—C10B—C9B | 114.07 (13) |
C11A—C10A—H10A | 108.5 | C11B—C10B—H10C | 108.7 |
C9A—C10A—H10A | 108.5 | C9B—C10B—H10C | 108.7 |
C11A—C10A—H10B | 108.5 | C11B—C10B—H10D | 108.7 |
C9A—C10A—H10B | 108.5 | C9B—C10B—H10D | 108.7 |
H10A—C10A—H10B | 107.5 | H10C—C10B—H10D | 107.6 |
O1A—C11A—C12A | 121.95 (14) | O1B—C11B—C12B | 121.36 (15) |
O1A—C11A—C10A | 118.62 (13) | O1B—C11B—C10B | 119.60 (14) |
C12A—C11A—C10A | 119.40 (13) | C12B—C11B—C10B | 119.04 (13) |
C7A—C12A—C11A | 120.79 (14) | C7B—C12B—C11B | 121.56 (15) |
C7A—C12A—H12A | 119.6 | C7B—C12B—H12B | 119.2 |
C11A—C12A—H12A | 119.6 | C11B—C12B—H12B | 119.2 |
C9A—C13A—H13A | 109.5 | C9B—C13B—H13D | 109.5 |
C9A—C13A—H13B | 109.5 | C9B—C13B—H13E | 109.5 |
H13A—C13A—H13B | 109.5 | H13D—C13B—H13E | 109.5 |
C9A—C13A—H13C | 109.5 | C9B—C13B—H13F | 109.5 |
H13A—C13A—H13C | 109.5 | H13D—C13B—H13F | 109.5 |
H13B—C13A—H13C | 109.5 | H13E—C13B—H13F | 109.5 |
C9A—C14A—H14A | 109.5 | C9B—C14B—H14D | 109.5 |
C9A—C14A—H14B | 109.5 | C9B—C14B—H14E | 109.5 |
H14A—C14A—H14B | 109.5 | H14D—C14B—H14E | 109.5 |
C9A—C14A—H14C | 109.5 | C9B—C14B—H14F | 109.5 |
H14A—C14A—H14C | 109.5 | H14D—C14B—H14F | 109.5 |
H14B—C14A—H14C | 109.5 | H14E—C14B—H14F | 109.5 |
C6A—C1A—C2A—C3A | 1.5 (2) | C6B—C1B—C2B—C3B | 0.7 (2) |
C6A—C1A—C2A—N2A | −179.83 (14) | C6B—C1B—C2B—N2B | 177.76 (13) |
O2A—N2A—C2A—C3A | −174.43 (16) | O2B—N2B—C2B—C1B | 5.8 (2) |
O3A—N2A—C2A—C3A | 4.0 (2) | O3B—N2B—C2B—C1B | −172.66 (14) |
O2A—N2A—C2A—C1A | 6.9 (2) | O2B—N2B—C2B—C3B | −177.04 (14) |
O3A—N2A—C2A—C1A | −174.71 (14) | O3B—N2B—C2B—C3B | 4.5 (2) |
C1A—C2A—C3A—C4A | −3.8 (2) | C1B—C2B—C3B—C4B | 0.5 (2) |
N2A—C2A—C3A—C4A | 177.60 (14) | N2B—C2B—C3B—C4B | −176.64 (14) |
C2A—C3A—C4A—C5A | 2.1 (2) | C2B—C3B—C4B—C5B | −1.1 (2) |
C3A—C4A—C5A—N3A | 178.34 (15) | C3B—C4B—C5B—N3B | 177.49 (14) |
C3A—C4A—C5A—C6A | 1.7 (2) | C3B—C4B—C5B—C6B | 0.5 (2) |
C2A—C1A—C6A—C5A | 2.4 (2) | C2B—C1B—C6B—C5B | −1.2 (2) |
C2A—C1A—C6A—N1A | −173.81 (13) | C2B—C1B—C6B—N1B | −177.79 (13) |
N3A—C5A—C6A—C1A | 179.38 (14) | N3B—C5B—C6B—C1B | −176.31 (14) |
C4A—C5A—C6A—C1A | −3.9 (2) | C4B—C5B—C6B—C1B | 0.6 (2) |
N3A—C5A—C6A—N1A | −4.4 (2) | N3B—C5B—C6B—N1B | 0.3 (2) |
C4A—C5A—C6A—N1A | 172.33 (13) | C4B—C5B—C6B—N1B | 177.25 (13) |
C7A—N1A—C6A—C1A | −77.9 (2) | C7B—N1B—C6B—C1B | −50.4 (2) |
C7A—N1A—C6A—C5A | 105.78 (17) | C7B—N1B—C6B—C5B | 133.02 (16) |
C6A—N1A—C7A—C12A | −0.5 (2) | C6B—N1B—C7B—C12B | −7.7 (2) |
C6A—N1A—C7A—C8A | −178.66 (14) | C6B—N1B—C7B—C8B | 170.43 (14) |
N1A—C7A—C8A—C9A | −152.68 (14) | N1B—C7B—C8B—C9B | 154.69 (13) |
C12A—C7A—C8A—C9A | 29.1 (2) | C12B—C7B—C8B—C9B | −27.1 (2) |
C7A—C8A—C9A—C10A | −50.05 (18) | C7B—C8B—C9B—C14B | 169.43 (13) |
C7A—C8A—C9A—C13A | −170.00 (13) | C7B—C8B—C9B—C13B | −70.59 (17) |
C7A—C8A—C9A—C14A | 70.27 (17) | C7B—C8B—C9B—C10B | 49.73 (17) |
C13A—C9A—C10A—C11A | 167.20 (14) | C14B—C9B—C10B—C11B | −169.64 (13) |
C8A—C9A—C10A—C11A | 48.27 (18) | C13B—C9B—C10B—C11B | 69.49 (17) |
C14A—C9A—C10A—C11A | −71.94 (18) | C8B—C9B—C10B—C11B | −50.92 (17) |
C9A—C10A—C11A—O1A | 157.90 (14) | C9B—C10B—C11B—O1B | −151.53 (14) |
C9A—C10A—C11A—C12A | −24.2 (2) | C9B—C10B—C11B—C12B | 29.4 (2) |
N1A—C7A—C12A—C11A | −179.87 (14) | N1B—C7B—C12B—C11B | −179.99 (14) |
C8A—C7A—C12A—C11A | −1.8 (2) | C8B—C7B—C12B—C11B | 2.0 (2) |
O1A—C11A—C12A—C7A | 176.94 (14) | O1B—C11B—C12B—C7B | 177.82 (14) |
C10A—C11A—C12A—C7A | −0.9 (2) | C10B—C11B—C12B—C7B | −3.1 (2) |
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1NA···O1Bi | 0.89 (2) | 1.99 (2) | 2.8678 (17) | 172 (2) |
N3A—H2NA···O1Aii | 0.90 (2) | 2.09 (2) | 2.9874 (19) | 176 (2) |
N3A—H3NA···O2Biii | 0.91 (2) | 2.40 (2) | 3.258 (2) | 156 (2) |
N1B—H1NB···O1Wiv | 0.89 (2) | 2.45 (2) | 3.2651 (15) | 152 (2) |
N3B—H2NB···O1Bv | 0.88 (2) | 2.05 (2) | 2.9161 (19) | 169 (2) |
N3B—H3NB···O1Avi | 0.88 (2) | 2.06 (2) | 2.8963 (18) | 159 (2) |
C8A—H8AA···O2Biii | 0.97 | 2.55 | 3.280 (2) | 132 |
C8B—H8BA···O1Wiv | 0.97 | 2.32 | 3.247 (2) | 160 |
Symmetry codes: (i) x, −y+1, z+1/2; (ii) −x, −y+2, −z+2; (iii) x, y+1, z+1; (iv) x+1/2, y−1/2, z; (v) −x+1/2, y+1/2, −z+1/2; (vi) −x+1/2, y−1/2, −z+3/2. |
Experimental details
Crystal data | |
Chemical formula | C14H17N3O3·0.25H2O |
Mr | 279.81 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 100 |
a, b, c (Å) | 18.9043 (1), 16.7048 (1), 17.8806 (2) |
β (°) | 102.443 (1) |
V (Å3) | 5513.93 (8) |
Z | 16 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.36 × 0.10 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector diffractometer |
Absorption correction | Multi-scan (SADABS; Bruker, 2009) |
Tmin, Tmax | 0.966, 0.991 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 58072, 8086, 5448 |
Rint | 0.072 |
(sin θ/λ)max (Å−1) | 0.705 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.053, 0.135, 1.06 |
No. of reflections | 8086 |
No. of parameters | 398 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.25, −0.28 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXTL (Sheldrick, 2008) and PLATON (Spek, 2009).
D—H···A | D—H | H···A | D···A | D—H···A |
N1A—H1NA···O1Bi | 0.89 (2) | 1.99 (2) | 2.8678 (17) | 172 (2) |
N3A—H2NA···O1Aii | 0.90 (2) | 2.09 (2) | 2.9874 (19) | 176 (2) |
N3A—H3NA···O2Biii | 0.91 (2) | 2.40 (2) | 3.258 (2) | 156 (2) |
N1B—H1NB···O1Wiv | 0.89 (2) | 2.45 (2) | 3.2651 (15) | 152 (2) |
N3B—H2NB···O1Bv | 0.88 (2) | 2.05 (2) | 2.9161 (19) | 169 (2) |
N3B—H3NB···O1Avi | 0.88 (2) | 2.06 (2) | 2.8963 (18) | 159 (2) |
C8A—H8AA···O2Biii | 0.97 | 2.55 | 3.280 (2) | 132 |
C8B—H8BA···O1Wiv | 0.97 | 2.32 | 3.247 (2) | 160 |
Symmetry codes: (i) x, −y+1, z+1/2; (ii) −x, −y+2, −z+2; (iii) x, y+1, z+1; (iv) x+1/2, y−1/2, z; (v) −x+1/2, y+1/2, −z+1/2; (vi) −x+1/2, y−1/2, −z+3/2. |
Acknowledgements
The authors acknowledge Universiti Sains Malaysia (USM) for the University Grant (No. 1001/PTEKIND/8140152). HKF and JHG thank USM for the Research University Golden Goose Grant (No. 1001/PFIZIK/811012). SHM and RMG thank USM for the award of postdoctoral fellowships and JHG thanks USM for a USM fellowship.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
In the recent past many (2-aminophenyl)aminocyclohexene derivatives have been prepared by different methods (Tonkikh et al., 2004; Cortés et al., 2004). Recently we have reported the synthesis of 1,3,3-trimethyl-1,2,3,4-tetrahydropyrido[1,2-a]benzimidazol-1-ol by the reaction of dimedone with orthophenylenediamine in acetic acid and ethanol (Mehdi et al., 2010). In this paper we report the synthesis and crystal structure of the title compound by the reaction of dimedone with 4-nitro o-phenylenediamine in the presence of acetic acid and ethanol.
The asymmetric unit of the title compound comprises of two 3-[(2-amino-5-nitrophenyl)amino]-5,5-dimethylcyclohex-2-enone molecules (A and B) and half of a water molecule (Fig. 1). The water molecule lies on a crystallographic twofold rotation axis and the other half of the molecule is generated by the symmetry operation (-x, y, 1/2-z). In both molecules, the cyclohexene rings (C7A-C12A and C7B-C12B) adopt envelope conformations. The puckering parameters are Q = 0.443 (3) Å, θ = 126.3 (2)° and φ = 295.3 (3)° for molecule A and Q = 0.448 (2) Å, θ = 51.6 (2)° and φ = 122.2 (3)° for molecule B. Atoms C9A and C9B are the flap atoms of C7A-C12A and C7B-C12B cyclohexene rings, respectively, deviating from the mean planes formed through the remaining five atoms by -0.6196 (17) and 0.6286 (15) Å, respectively. The superposition of the non-H atoms of molecules A and B (Fig. 2) using XP in SHELXTL (Sheldrick, 2008) shows that the geometries of the two cyclohexene rings are different, with flap atoms in opposite directions. The bond lengths and angles are comparable to those observed in related structures (Ghalib et al., 2010; Mehdi et al., 2010).
In the crystal structure, adjacent molecules are interconnected into a three-dimensional network through N1A—H1NA···O1B, N3A—H2NA···O1A, N3A—H3NA···O2B, N1B—H1NB···O1W, N3B—H2NB···O1B, N3B—H3NB···O1A, C8A—H8AA···O2B, C8B—H8BA···O1W hydrogen bonds (Table 1). The crystal structure is further stabilized by intermolecular aromatic stacking interactions with Cg1···Cg1* = 3.6630 (19) Å and Cg2···Cg2$ 3.4985 (9) Å [symmetry codes: (*) -x, y, 3/2-z; ($) 1/2-x, 1/2-y, -z] where Cg1 and Cg2 are centroids of the C1A-C6A and C1B-C6B benzene rings, respectively.