organic compounds
6-Butyryl-5-hydroxy-4-phenylseselin
aDepartment of Chemistry, Faculty of Science, Chulalongkorn University, Phyathai Road, Pathumwan, Bangkok 10330, Thailand
*Correspondence e-mail: thammarat.aree@gmail.com
In the title coumarin compound (systematic name: 6-butyryl-5-hydroxy-8,8-dimethyl-4-phenyl-2H,8H-benzo[1,2-b;3,4-b′]dipyran-2-one), C24H22O5, also known as mammea A/AC cyclo D, the chromene and pyran rings are almost coplanar with a maximum deviation from the mean plane of 0.295 (2) Å. The attached phenyl group is inclined at 53.49 (8)° with respect to the chromene ring. The molecular structure is stabilized by an intramolecular O—H⋯O hydrogen bond. In the crystal, molecules are linked into sheets parallel to (101) by intermolecular C—H⋯O hydrogen bonds. Adjacent sheets are sustained by intermolecular C—H⋯π and π–π [centroid–centroid distance = 4.471 (2) Å] interactions.
Related literature
For the structural characterization of mammea A/AC cyclo D, see: Thebtaranonth et al. (1981); Morel et al. (1999); Kaweetripob et al. (2000). For its anti-HIV activity, see: Márquez et al. (2005); Bedoya et al. (2005) and for its anticancer activity, see: Reyes-Chilpa et al. (2004). For related see: Mahidol et al. (2002). For a review on the cytotoxic activity of see: Kostova (2005).
Experimental
Crystal data
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Refinement
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Data collection: APEX2 (Bruker, 2005); cell SAINT (Bruker, 2005); data reduction: SAINT; program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL; molecular graphics: Mercury (Macrae et al. 2006); software used to prepare material for publication: SHELXTL.
Supporting information
https://doi.org/10.1107/S160053681003415X/ds2051sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S160053681003415X/ds2051Isup2.hkl
The title coumarin compound was isolated from the hexane crude extract of the flowers of Mammea siamensis, which is a Thai medicinal plant, locally known as Sarapee. This coumarin mammea A/AC cyclo D was known for almost 30 years. Its structure was ambigously characterized by spectroscopic techniques (Thebtaranonth et al., 1981; Morel et al., 1999; and Kaweetripob et al., 2000). Other
were also isolated from the same flower (Mahidol et al., 2002 and other references cited therein).The light yellow, block-like single crystals were obtained by slow evaporation of a hexane–dichloromethane solution at room temperature.
All H atoms were located in a difference Fourier map and then refined using a riding model: C–H = 0.97 Å(secondary), 0.93 Å (aromatic), 0.96 Å (methyl), O–H = 0.82 Å (hydroxy), and Uiso(H) = 1.2Ueq(C,O) and Uiso(H) = 1.5Ueq(methyl C). In the absence of significant
effects, Friedel pairs were averaged and therefore, the could not be determined.The title coumarin compound, 6-butyryl-5-hydroxy-4-phenylseselin or mammea A/AC cyclo D (Fig. 1) was isolated from the hexane crude extract of the flowers of Mammea siamensis (Sarapee in Thai). Several
derived from the same flowers have been reported, see for example Mahidol et al. 2002 and other references cited therein. In this work, we report the of mammea A/AC cyclo D.The molecular structure consists of one chromene ring, one pyran ring and one phenyl ring (Fig. 1). The chromene and pyran rings are almost coplanar. Atoms C2, C2", C4" and O1" most deviate from the mean plane by 0.133 (3), 0.295 (2), –0.154 (3) and –0.172 (2) Å, respectively. The butyraldehyde group, hydroxy group and atom O2 displace from the chromene plane to greater extents: 0.326 (3) Å, O3; 0.307 (4) Å, O1"'; and –0.303 (7) Å, C3"'. The methyl C4"', C5" and C6" atoms point upwards and downwards the chromene ring with torsion angles of –73.8 (6)° for C1"'—C2"'—C3"'—C4"', –142.8 (3)° for C4"—C3"—C2"—C5" and 91.7 (4)° for C4"—C3"—C2"—C6". The attached phenyl group inclines by 53.49 (8)° against the chromene ring. The molecular structure is stabilized by intramolecular O3—H···O1"' hydrogen bond.
In the crystal, the molecules are linked into sheets parallel to (101) by intermolecular, bifurcated C3"'—H32···O2(x, y + 1, z) and C4'—H4'···O2(x – 0.5, –y + 0.5, z + 0.5) hydrogen bonds (Fig. 2 and Table 1). The adjacent sheets are sustained by intermolecular C6"—H61"···π (ring C1'—C2'—C3'—C4'—C5'—C6') and π–π (two adjacent rings of C4a—C5—C6—C7—C8—C8a) interactions (Fig. 3). The corresponding distance from atom H to the phenyl-ring center is 2.75 Å and the is 3.54 Å.
For the structural characterization of mammea A/AC cyclo D, see: Thebtaranonth et al. (1981); Morel et al. (1999); Kaweetripob et al. (2000). For its anti-HIV activity, see: Márquez et al. (2005); Bedoya et al. (2005) and for its anticancer activity, see: Reyes-Chilpa et al. (2004). For related
see: Mahidol et al. (2002). For a review on the cytotoxic activity of see: Kostova (2005).Data collection: APEX2 (Bruker, 2005); cell
SAINT (Bruker, 2005); data reduction: SAINT (Bruker, 2005); program(s) used to solve structure: SHELXTL (Sheldrick, 2008); program(s) used to refine structure: SHELXTL (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al. 2006); software used to prepare material for publication: SHELXTL (Sheldrick, 2008).C24H22O5 | F(000) = 824 |
Mr = 390.42 | Dx = 1.292 Mg m−3 |
Monoclinic, Cc | Melting point = 412–413 K |
Hall symbol: C -2yc | Mo Kα radiation, λ = 0.71073 Å |
a = 17.0746 (4) Å | Cell parameters from 2083 reflections |
b = 13.4170 (4) Å | θ = 2.4–24.3° |
c = 8.7607 (3) Å | µ = 0.09 mm−1 |
β = 90.341 (1)° | T = 298 K |
V = 2006.95 (10) Å3 | Block, light yellow |
Z = 4 | 0.40 × 0.32 × 0.16 mm |
Bruker SMART APEXII CCD area-detector diffractometer | 2115 independent reflections |
Radiation source: fine-focus sealed tube | 1714 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.023 |
φ and ω scans | θmax = 26.7°, θmin = 1.9° |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | h = −21→21 |
Tmin = 0.965, Tmax = 0.986 | k = −16→12 |
5484 measured reflections | l = −11→10 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.037 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.100 | H-atom parameters constrained |
S = 1.03 | w = 1/[σ2(Fo2) + (0.0539P)2 + 0.3001P] where P = (Fo2 + 2Fc2)/3 |
2115 reflections | (Δ/σ)max < 0.001 |
265 parameters | Δρmax = 0.13 e Å−3 |
2 restraints | Δρmin = −0.14 e Å−3 |
C24H22O5 | V = 2006.95 (10) Å3 |
Mr = 390.42 | Z = 4 |
Monoclinic, Cc | Mo Kα radiation |
a = 17.0746 (4) Å | µ = 0.09 mm−1 |
b = 13.4170 (4) Å | T = 298 K |
c = 8.7607 (3) Å | 0.40 × 0.32 × 0.16 mm |
β = 90.341 (1)° |
Bruker SMART APEXII CCD area-detector diffractometer | 2115 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2005) | 1714 reflections with I > 2σ(I) |
Tmin = 0.965, Tmax = 0.986 | Rint = 0.023 |
5484 measured reflections |
R[F2 > 2σ(F2)] = 0.037 | 2 restraints |
wR(F2) = 0.100 | H-atom parameters constrained |
S = 1.03 | Δρmax = 0.13 e Å−3 |
2115 reflections | Δρmin = −0.14 e Å−3 |
265 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.37812 (12) | 0.33800 (15) | 0.0704 (2) | 0.0539 (5) | |
C2 | 0.33746 (18) | 0.2581 (2) | 0.1325 (4) | 0.0585 (8) | |
C3 | 0.26471 (17) | 0.2825 (2) | 0.2042 (4) | 0.0527 (7) | |
H3 | 0.2335 | 0.2304 | 0.2382 | 0.063* | |
C4 | 0.23882 (15) | 0.3763 (2) | 0.2253 (3) | 0.0417 (6) | |
C4A | 0.28947 (13) | 0.4585 (2) | 0.1797 (3) | 0.0381 (6) | |
C5 | 0.27705 (14) | 0.5596 (2) | 0.2138 (3) | 0.0401 (6) | |
C6 | 0.32418 (15) | 0.6360 (2) | 0.1496 (3) | 0.0418 (6) | |
C7 | 0.38818 (14) | 0.6053 (2) | 0.0584 (3) | 0.0430 (6) | |
C8 | 0.40587 (14) | 0.5060 (2) | 0.0336 (3) | 0.0426 (6) | |
C8A | 0.35629 (14) | 0.4350 (2) | 0.0958 (3) | 0.0413 (6) | |
O2 | 0.36629 (16) | 0.17743 (18) | 0.1167 (4) | 0.0866 (8) | |
O3 | 0.22095 (11) | 0.58102 (16) | 0.3131 (2) | 0.0545 (5) | |
H3O | 0.2187 | 0.6415 | 0.3254 | 0.065* | |
C1' | 0.15739 (15) | 0.3906 (2) | 0.2792 (3) | 0.0423 (6) | |
C2' | 0.12989 (18) | 0.3393 (2) | 0.4053 (3) | 0.0517 (7) | |
H2' | 0.1639 | 0.2998 | 0.4623 | 0.062* | |
C3' | 0.0518 (2) | 0.3467 (3) | 0.4467 (3) | 0.0634 (9) | |
H3' | 0.0335 | 0.3115 | 0.5307 | 0.076* | |
C4' | 0.00155 (18) | 0.4058 (3) | 0.3643 (4) | 0.0651 (9) | |
H4' | −0.0505 | 0.4115 | 0.3936 | 0.078* | |
C5' | 0.02778 (17) | 0.4563 (2) | 0.2394 (4) | 0.0613 (8) | |
H5' | −0.0066 | 0.4958 | 0.1831 | 0.074* | |
C6' | 0.10527 (16) | 0.4491 (2) | 0.1961 (3) | 0.0518 (7) | |
H6' | 0.1227 | 0.4836 | 0.1107 | 0.062* | |
O1" | 0.43245 (11) | 0.67654 (16) | −0.0081 (2) | 0.0583 (6) | |
C2" | 0.51443 (16) | 0.6551 (2) | −0.0456 (3) | 0.0512 (7) | |
C3" | 0.52184 (19) | 0.5511 (3) | −0.1026 (4) | 0.0659 (9) | |
H3" | 0.5624 | 0.5355 | −0.1689 | 0.079* | |
C4" | 0.47252 (17) | 0.4806 (3) | −0.0619 (3) | 0.0590 (8) | |
H4" | 0.4802 | 0.4152 | −0.0938 | 0.071* | |
C5" | 0.5349 (2) | 0.7323 (4) | −0.1653 (5) | 0.0883 (13) | |
H51" | 0.5019 | 0.7234 | −0.2533 | 0.132* | |
H53" | 0.5887 | 0.7246 | −0.1941 | 0.132* | |
H52" | 0.5271 | 0.7979 | −0.1242 | 0.132* | |
C6" | 0.56228 (19) | 0.6696 (3) | 0.0983 (4) | 0.0650 (9) | |
H61" | 0.5531 | 0.7352 | 0.1383 | 0.098* | |
H62" | 0.6169 | 0.6621 | 0.0754 | 0.098* | |
H63" | 0.5473 | 0.6207 | 0.1726 | 0.098* | |
O1"' | 0.25223 (16) | 0.75871 (17) | 0.2771 (3) | 0.0754 (7) | |
C1"' | 0.30374 (18) | 0.7407 (2) | 0.1820 (4) | 0.0534 (7) | |
C2"' | 0.3419 (2) | 0.8263 (2) | 0.1013 (5) | 0.0707 (9) | |
H21 | 0.3395 | 0.8142 | −0.0078 | 0.085* | |
H22 | 0.3968 | 0.8285 | 0.1306 | 0.085* | |
C3"' | 0.3056 (3) | 0.9268 (3) | 0.1337 (8) | 0.1047 (16) | |
H31 | 0.2988 | 0.9338 | 0.2430 | 0.126* | |
H32 | 0.3413 | 0.9786 | 0.1007 | 0.126* | |
C4"' | 0.2279 (3) | 0.9421 (4) | 0.0562 (8) | 0.131 (2) | |
H41 | 0.2350 | 0.9428 | −0.0524 | 0.197* | |
H42 | 0.2059 | 1.0045 | 0.0882 | 0.197* | |
H43 | 0.1931 | 0.8889 | 0.0832 | 0.197* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0436 (10) | 0.0447 (11) | 0.0734 (13) | −0.0010 (8) | 0.0108 (9) | −0.0126 (9) |
C2 | 0.0485 (16) | 0.0413 (17) | 0.086 (2) | −0.0067 (13) | 0.0061 (16) | −0.0075 (15) |
C3 | 0.0431 (15) | 0.0435 (15) | 0.0716 (19) | −0.0084 (12) | 0.0022 (13) | 0.0007 (14) |
C4 | 0.0370 (13) | 0.0426 (14) | 0.0456 (15) | −0.0053 (11) | −0.0006 (11) | 0.0026 (11) |
C4A | 0.0330 (13) | 0.0428 (14) | 0.0386 (13) | −0.0045 (11) | −0.0004 (10) | −0.0006 (11) |
C5 | 0.0347 (12) | 0.0447 (15) | 0.0410 (13) | −0.0012 (11) | −0.0023 (10) | −0.0002 (12) |
C6 | 0.0329 (12) | 0.0441 (15) | 0.0482 (14) | −0.0034 (11) | −0.0063 (10) | 0.0018 (11) |
C7 | 0.0322 (12) | 0.0518 (16) | 0.0450 (14) | −0.0107 (11) | −0.0031 (10) | 0.0063 (12) |
C8 | 0.0368 (12) | 0.0485 (15) | 0.0426 (13) | −0.0060 (11) | 0.0001 (10) | −0.0046 (12) |
C8A | 0.0357 (14) | 0.0437 (15) | 0.0444 (14) | −0.0024 (11) | 0.0000 (11) | −0.0062 (11) |
O2 | 0.0718 (15) | 0.0470 (14) | 0.141 (2) | 0.0045 (12) | 0.0231 (15) | −0.0142 (15) |
O3 | 0.0476 (11) | 0.0509 (12) | 0.0652 (13) | −0.0020 (9) | 0.0161 (9) | −0.0061 (10) |
C1' | 0.0368 (13) | 0.0457 (15) | 0.0445 (13) | −0.0097 (11) | 0.0020 (10) | −0.0001 (12) |
C2' | 0.0556 (17) | 0.0551 (18) | 0.0443 (15) | −0.0095 (14) | −0.0012 (12) | 0.0048 (13) |
C3' | 0.0620 (19) | 0.082 (2) | 0.0466 (17) | −0.0215 (17) | 0.0152 (14) | 0.0053 (16) |
C4' | 0.0436 (16) | 0.083 (2) | 0.069 (2) | −0.0096 (15) | 0.0154 (14) | −0.0080 (18) |
C5' | 0.0419 (15) | 0.071 (2) | 0.071 (2) | 0.0020 (14) | −0.0005 (14) | 0.0055 (16) |
C6' | 0.0408 (14) | 0.0583 (18) | 0.0564 (16) | −0.0082 (12) | 0.0040 (11) | 0.0115 (13) |
O1" | 0.0438 (11) | 0.0547 (13) | 0.0765 (14) | −0.0081 (9) | 0.0076 (10) | 0.0172 (10) |
C2" | 0.0376 (14) | 0.0625 (18) | 0.0537 (17) | −0.0125 (12) | 0.0047 (11) | 0.0103 (14) |
C3" | 0.0513 (17) | 0.086 (3) | 0.0604 (18) | −0.0193 (16) | 0.0220 (14) | −0.0193 (17) |
C4" | 0.0473 (16) | 0.066 (2) | 0.0637 (19) | −0.0107 (15) | 0.0178 (13) | −0.0189 (16) |
C5" | 0.059 (2) | 0.117 (3) | 0.089 (3) | −0.016 (2) | 0.0098 (18) | 0.045 (2) |
C6" | 0.0623 (19) | 0.066 (2) | 0.067 (2) | −0.0040 (15) | −0.0097 (15) | −0.0067 (16) |
O1"' | 0.0721 (15) | 0.0505 (13) | 0.1036 (19) | 0.0059 (11) | 0.0179 (14) | −0.0090 (12) |
C1"' | 0.0393 (14) | 0.0468 (16) | 0.0739 (19) | −0.0003 (12) | −0.0069 (14) | 0.0006 (15) |
C2"' | 0.0588 (19) | 0.0437 (18) | 0.110 (3) | −0.0058 (14) | −0.0009 (18) | 0.0087 (18) |
C3"' | 0.089 (3) | 0.047 (2) | 0.178 (5) | 0.001 (2) | 0.006 (3) | 0.011 (3) |
C4"' | 0.107 (4) | 0.086 (4) | 0.200 (6) | 0.037 (3) | −0.002 (4) | 0.023 (4) |
O1—C8A | 1.372 (3) | C5'—C6' | 1.382 (4) |
O1—C2 | 1.389 (4) | C5'—H5' | 0.9300 |
C2—O2 | 1.198 (4) | C6'—H6' | 0.9300 |
C2—C3 | 1.433 (4) | O1"—C2" | 1.468 (3) |
C3—C4 | 1.347 (4) | C2"—C3" | 1.488 (5) |
C3—H3 | 0.9300 | C2"—C6" | 1.510 (4) |
C4—C4A | 1.458 (3) | C2"—C5" | 1.516 (5) |
C4—C1' | 1.483 (4) | C3"—C4" | 1.317 (4) |
C4A—C8A | 1.397 (3) | C3"—H3" | 0.9300 |
C4A—C5 | 1.406 (3) | C4"—H4" | 0.9300 |
C5—O3 | 1.329 (3) | C5"—H51" | 0.9600 |
C5—C6 | 1.421 (4) | C5"—H53" | 0.9600 |
C6—C7 | 1.418 (4) | C5"—H52" | 0.9600 |
C6—C1"' | 1.476 (4) | C6"—H61" | 0.9600 |
C7—O1" | 1.353 (3) | C6"—H62" | 0.9600 |
C7—C8 | 1.385 (4) | C6"—H63" | 0.9600 |
C8—C8A | 1.388 (4) | O1"'—C1"' | 1.239 (4) |
C8—C4" | 1.457 (4) | C1"'—C2"' | 1.500 (5) |
O3—H3O | 0.8200 | C2"'—C3"' | 1.511 (6) |
C1'—C2' | 1.385 (4) | C2"'—H21 | 0.9700 |
C1'—C6' | 1.389 (4) | C2"'—H22 | 0.9700 |
C2'—C3' | 1.387 (4) | C3"'—C4"' | 1.501 (7) |
C2'—H2' | 0.9300 | C3"'—H31 | 0.9700 |
C3'—C4' | 1.371 (5) | C3"'—H32 | 0.9700 |
C3'—H3' | 0.9300 | C4"'—H41 | 0.9600 |
C4'—C5' | 1.365 (4) | C4"'—H42 | 0.9600 |
C4'—H4' | 0.9300 | C4"'—H43 | 0.9600 |
C8A—O1—C2 | 122.1 (2) | C7—O1"—C2" | 119.6 (2) |
O2—C2—O1 | 116.5 (3) | O1"—C2"—C3" | 110.0 (2) |
O2—C2—C3 | 127.9 (3) | O1"—C2"—C6" | 107.5 (2) |
O1—C2—C3 | 115.6 (3) | C3"—C2"—C6" | 110.7 (3) |
C4—C3—C2 | 124.1 (3) | O1"—C2"—C5" | 104.2 (3) |
C4—C3—H3 | 118.0 | C3"—C2"—C5" | 112.8 (3) |
C2—C3—H3 | 118.0 | C6"—C2"—C5" | 111.3 (3) |
C3—C4—C4A | 118.2 (2) | C4"—C3"—C2" | 121.8 (3) |
C3—C4—C1' | 118.3 (2) | C4"—C3"—H3" | 119.1 |
C4A—C4—C1' | 123.2 (2) | C2"—C3"—H3" | 119.1 |
C8A—C4A—C5 | 117.0 (2) | C3"—C4"—C8 | 119.4 (3) |
C8A—C4A—C4 | 117.5 (2) | C3"—C4"—H4" | 120.3 |
C5—C4A—C4 | 125.5 (2) | C8—C4"—H4" | 120.3 |
O3—C5—C4A | 117.2 (2) | C2"—C5"—H51" | 109.5 |
O3—C5—C6 | 121.0 (2) | C2"—C5"—H53" | 109.5 |
C4A—C5—C6 | 121.7 (2) | H51"—C5"—H53" | 109.5 |
C7—C6—C5 | 117.0 (2) | C2"—C5"—H52" | 109.5 |
C7—C6—C1"' | 124.6 (3) | H51"—C5"—H52" | 109.5 |
C5—C6—C1"' | 118.4 (3) | H53"—C5"—H52" | 109.5 |
O1"—C7—C8 | 119.3 (2) | C2"—C6"—H61" | 109.5 |
O1"—C7—C6 | 118.2 (2) | C2"—C6"—H62" | 109.5 |
C8—C7—C6 | 122.5 (2) | H61"—C6"—H62" | 109.5 |
C7—C8—C8A | 117.7 (2) | C2"—C6"—H63" | 109.5 |
C7—C8—C4" | 119.1 (3) | H61"—C6"—H63" | 109.5 |
C8A—C8—C4" | 123.1 (3) | H62"—C6"—H63" | 109.5 |
O1—C8A—C8 | 114.8 (2) | O1"'—C1"'—C6 | 119.0 (3) |
O1—C8A—C4A | 121.5 (2) | O1"'—C1"'—C2"' | 118.7 (3) |
C8—C8A—C4A | 123.7 (2) | C6—C1"'—C2"' | 122.3 (3) |
C5—O3—H3O | 109.5 | C1"'—C2"'—C3"' | 114.5 (3) |
C2'—C1'—C6' | 118.6 (2) | C1"'—C2"'—H21 | 108.6 |
C2'—C1'—C4 | 120.8 (3) | C3"'—C2"'—H21 | 108.6 |
C6'—C1'—C4 | 120.3 (2) | C1"'—C2"'—H22 | 108.6 |
C1'—C2'—C3' | 120.2 (3) | C3"'—C2"'—H22 | 108.6 |
C1'—C2'—H2' | 119.9 | H21—C2"'—H22 | 107.6 |
C3'—C2'—H2' | 119.9 | C4"'—C3"'—C2"' | 113.6 (4) |
C4'—C3'—C2' | 120.2 (3) | C4"'—C3"'—H31 | 108.9 |
C4'—C3'—H3' | 119.9 | C2"'—C3"'—H31 | 108.9 |
C2'—C3'—H3' | 119.9 | C4"'—C3"'—H32 | 108.9 |
C5'—C4'—C3' | 120.1 (3) | C2"'—C3"'—H32 | 108.9 |
C5'—C4'—H4' | 119.9 | H31—C3"'—H32 | 107.7 |
C3'—C4'—H4' | 119.9 | C3"'—C4"'—H41 | 109.5 |
C4'—C5'—C6' | 120.3 (3) | C3"'—C4"'—H42 | 109.5 |
C4'—C5'—H5' | 119.9 | H41—C4"'—H42 | 109.5 |
C6'—C5'—H5' | 119.9 | C3"'—C4"'—H43 | 109.5 |
C5'—C6'—C1' | 120.5 (3) | H41—C4"'—H43 | 109.5 |
C5'—C6'—H6' | 119.8 | H42—C4"'—H43 | 109.5 |
C1'—C6'—H6' | 119.8 | ||
C8A—O1—C2—O2 | −172.2 (3) | C4—C4A—C8A—O1 | −6.5 (3) |
C8A—O1—C2—C3 | 9.4 (4) | C5—C4A—C8A—C8 | −6.3 (3) |
O2—C2—C3—C4 | 175.7 (4) | C4—C4A—C8A—C8 | 174.1 (2) |
O1—C2—C3—C4 | −6.1 (5) | C3—C4—C1'—C2' | 50.3 (4) |
C2—C3—C4—C4A | −3.2 (4) | C4A—C4—C1'—C2' | −136.1 (3) |
C2—C3—C4—C1' | 170.7 (3) | C3—C4—C1'—C6' | −124.1 (3) |
C3—C4—C4A—C8A | 9.5 (3) | C4A—C4—C1'—C6' | 49.6 (4) |
C1'—C4—C4A—C8A | −164.1 (2) | C6'—C1'—C2'—C3' | 0.0 (4) |
C3—C4—C4A—C5 | −170.0 (2) | C4—C1'—C2'—C3' | −174.5 (3) |
C1'—C4—C4A—C5 | 16.3 (4) | C1'—C2'—C3'—C4' | −0.8 (5) |
C8A—C4A—C5—O3 | −169.6 (2) | C2'—C3'—C4'—C5' | 1.1 (5) |
C4—C4A—C5—O3 | 9.9 (3) | C3'—C4'—C5'—C6' | −0.7 (5) |
C8A—C4A—C5—C6 | 8.1 (3) | C4'—C5'—C6'—C1' | −0.2 (5) |
C4—C4A—C5—C6 | −172.4 (2) | C2'—C1'—C6'—C5' | 0.5 (4) |
O3—C5—C6—C7 | 173.0 (2) | C4—C1'—C6'—C5' | 175.0 (3) |
C4A—C5—C6—C7 | −4.6 (3) | C8—C7—O1"—C2" | −27.2 (3) |
O3—C5—C6—C1"' | −6.8 (3) | C6—C7—O1"—C2" | 153.9 (2) |
C4A—C5—C6—C1"' | 175.5 (2) | C7—O1"—C2"—C3" | 38.7 (3) |
C5—C6—C7—O1" | 177.9 (2) | C7—O1"—C2"—C6" | −81.9 (3) |
C1"'—C6—C7—O1" | −2.3 (4) | C7—O1"—C2"—C5" | 159.9 (3) |
C5—C6—C7—C8 | −1.1 (3) | O1"—C2"—C3"—C4" | −27.0 (4) |
C1"'—C6—C7—C8 | 178.8 (2) | C6"—C2"—C3"—C4" | 91.7 (4) |
O1"—C7—C8—C8A | −176.1 (2) | C5"—C2"—C3"—C4" | −142.8 (3) |
C6—C7—C8—C8A | 2.9 (4) | C2"—C3"—C4"—C8 | 4.1 (5) |
O1"—C7—C8—C4" | 0.9 (4) | C7—C8—C4"—C3" | 10.7 (4) |
C6—C7—C8—C4" | 179.8 (2) | C8A—C8—C4"—C3" | −172.5 (3) |
C2—O1—C8A—C8 | 176.2 (3) | C7—C6—C1"'—O1"' | −171.8 (3) |
C2—O1—C8A—C4A | −3.2 (4) | C5—C6—C1"'—O1"' | 8.1 (4) |
C7—C8—C8A—O1 | −178.4 (2) | C7—C6—C1"'—C2"' | 9.6 (4) |
C4"—C8—C8A—O1 | 4.7 (3) | C5—C6—C1"'—C2"' | −170.5 (3) |
C7—C8—C8A—C4A | 0.9 (4) | O1"'—C1"'—C2"'—C3"' | −6.7 (5) |
C4"—C8—C8A—C4A | −175.9 (2) | C6—C1"'—C2"'—C3"' | 171.9 (3) |
C5—C4A—C8A—O1 | 173.1 (2) | C1"'—C2"'—C3"'—C4"' | −73.8 (6) |
Cg1 is the centroid of the C1'–C6'ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3O···O1"′ | 0.82 | 1.73 | 2.464 (3) | 149 |
C3"′—H32···O2i | 0.97 | 2.71 | 3.522 (5) | 142 |
C4′—H4′···O2ii | 0.93 | 2.70 | 3.396 (4) | 132 |
C6"—H61"···Cg1iii | 0.96 | 2.75 | 3.646 (4) | 156 |
Symmetry codes: (i) x, y+1, z; (ii) x−1/2, −y+1/2, z+1/2; (iii) x+1/2, y+1/2, z. |
Experimental details
Crystal data | |
Chemical formula | C24H22O5 |
Mr | 390.42 |
Crystal system, space group | Monoclinic, Cc |
Temperature (K) | 298 |
a, b, c (Å) | 17.0746 (4), 13.4170 (4), 8.7607 (3) |
β (°) | 90.341 (1) |
V (Å3) | 2006.95 (10) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.09 |
Crystal size (mm) | 0.40 × 0.32 × 0.16 |
Data collection | |
Diffractometer | Bruker SMART APEXII CCD area-detector |
Absorption correction | Multi-scan (SADABS; Bruker, 2005) |
Tmin, Tmax | 0.965, 0.986 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5484, 2115, 1714 |
Rint | 0.023 |
(sin θ/λ)max (Å−1) | 0.632 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.037, 0.100, 1.03 |
No. of reflections | 2115 |
No. of parameters | 265 |
No. of restraints | 2 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.13, −0.14 |
Computer programs: APEX2 (Bruker, 2005), SAINT (Bruker, 2005), SHELXTL (Sheldrick, 2008), Mercury (Macrae et al. 2006).
Cg1 is the centroid of the C1'–C6'ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
O3—H3O···O1"' | 0.82 | 1.73 | 2.464 (3) | 148.7 |
C3"'—H32···O2i | 0.97 | 2.71 | 3.522 (5) | 142.2 |
C4'—H4'···O2ii | 0.93 | 2.70 | 3.396 (4) | 132.1 |
C6"—H61"···Cg1iii | 0.96 | 2.75 | 3.646 (4) | 156 |
Symmetry codes: (i) x, y+1, z; (ii) x−1/2, −y+1/2, z+1/2; (iii) x+1/2, y+1/2, z. |
Acknowledgements
This work was supported by the Thai Government Stimulus Package 2 (TKK2555), under the Project for the Establishment of a Comprehensive Center for Innovative Food, Health Products and Agriculture (PERFECTA), the Center for Petroleum, Petrochemicals and Advanced Materials, Chulalongkorn University (to TA), the National Research University Project of CHE and the Ratchadaphiseksomphot Endowment Fund (FW001A) (to ST).
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
The title coumarin compound, 6-butyryl-5-hydroxy-4-phenylseselin or mammea A/AC cyclo D (Fig. 1) was isolated from the hexane crude extract of the flowers of Mammea siamensis (Sarapee in Thai). Several coumarins derived from the same flowers have been reported, see for example Mahidol et al. 2002 and other references cited therein. In this work, we report the crystal structure of mammea A/AC cyclo D.
The molecular structure consists of one chromene ring, one pyran ring and one phenyl ring (Fig. 1). The chromene and pyran rings are almost coplanar. Atoms C2, C2", C4" and O1" most deviate from the mean plane by 0.133 (3), 0.295 (2), –0.154 (3) and –0.172 (2) Å, respectively. The butyraldehyde group, hydroxy group and atom O2 displace from the chromene plane to greater extents: 0.326 (3) Å, O3; 0.307 (4) Å, O1"'; and –0.303 (7) Å, C3"'. The methyl C4"', C5" and C6" atoms point upwards and downwards the chromene ring with torsion angles of –73.8 (6)° for C1"'—C2"'—C3"'—C4"', –142.8 (3)° for C4"—C3"—C2"—C5" and 91.7 (4)° for C4"—C3"—C2"—C6". The attached phenyl group inclines by 53.49 (8)° against the chromene ring. The molecular structure is stabilized by intramolecular O3—H···O1"' hydrogen bond.
In the crystal, the molecules are linked into sheets parallel to (101) by intermolecular, bifurcated C3"'—H32···O2(x, y + 1, z) and C4'—H4'···O2(x – 0.5, –y + 0.5, z + 0.5) hydrogen bonds (Fig. 2 and Table 1). The adjacent sheets are sustained by intermolecular C6"—H61"···π (ring C1'—C2'—C3'—C4'—C5'—C6') and π–π (two adjacent rings of C4a—C5—C6—C7—C8—C8a) interactions (Fig. 3). The corresponding distance from atom H to the phenyl-ring center is 2.75 Å and the interplanar spacing is 3.54 Å.