organic compounds
2,2′-Bi-1,3,4-thiadiazole-5,5′-diamine tetrahydrate
aDepartment of Chemistry and Centre for Innovation in Chemistry, Faculty of Science, Prince of Songkla University, Hat Yai, Songkhla 90112, Thailand
*Correspondence e-mail: saowanit.sa@psu.ac.th
In the title compound, C4H4N6S2·4H2O, the complete organic molecule is generated by crystallographic twofold symmetry and the dihedral angle between the aromatic rings is 10.24 (3)°. In the crystal, intermolecular N—H⋯N, N—H⋯O, O—H⋯N and O—H⋯O hydrogen bonds and aromatic π–π stacking interactions [centroid–centroid separations = 3.530 (3) and 3.600 (3) Å] are observed.
Related literature
For background to the pharmacutical properties of thiadiazoles, see: Chapleo et al. (1986; 1987); Stillings et al. (1986); Clerici et al. (2001). For their tribological behavior, see: Zhu et al. (2009) and for their pesticidal activity, see: Fan et al. (2010).
Experimental
Crystal data
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Refinement
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Data collection: SMART (Bruker, 1998); cell SAINT (Bruker, 2003); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: Mercury.
Supporting information
https://doi.org/10.1107/S160053681002996X/hb5580sup1.cif
contains datablocks I, global. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S160053681002996X/hb5580Isup2.hkl
The 5-amino-1,3,4-thiadiazole-2-thiol (0.28 g, 2.1 mmol) was dissolved in acetronitile (40 ml) and then copper(I) thiocyanate salt (0.16 g, 1.3 mmol) was added. After that, the reaction of mixture was performed under ultrasonic activation (338–340 K, 40 kHz) for 2 h. The light yellow filtration was kept and allowed to slowly to room temperature. Colourless blocks and rods of the title compound were recovered after a few days. Insufficient crystalline material was obtained for elemental analysis.
All hydrogen atoms were located in a difference Fourier map and restrained to ride on their parent atoms, N—H = 0.87–0.89 Å with Uiso(H) = 1.2Ueq(N) and O—H = 0.81–0.84 Å with Uiso(H) = 1.2Ueq(O), respectively.
Most of Shift bases, five membered heterocyclic thiadiazole derivatives containg N and S atoms were studied and reported due to the various applications. Different classes of thiadiazole compounds were found to be pharmacologically active using antihypertensive, anticonvulsant (Chapleo et al., 1986; 1987; Stillings et al., 1986), anti-depressant and anxiolytic activities (Clerici et al., 2001). Recently, the friction and wear properties of 1,3,4-thiadiazole-2-thione derivatives have attracted a considerable amount of research effort. The compounds were synthesized and tested their tribological behavior as additive in rapeseed oil (ROS) to possess good thermal stabilities and anti-corrosive abilities and excellent load-carrying capacities. Moreover, they have good anti-wear and friction-reducing properties (Zhu et al., 2009). In the agriculture, these compounds are widely use as pesticides activities and they have been comercialed as agrochemicals (Fan et al., 2010)
In the present work, the title compound is the by-product of the reaction between copper(I) thiocyanate and 5-amino-1,3,4-thiadiazole-2-thiol ligand. Its
is reported here. The compound crystallizes in monoclinic system, C2/c. The asymetric unit contains half the molecules of the title compound. The consists of discrete molecules (Fig. 1) and 5,5'-amine-(2,2'-1,3,4-thiadiazole) molecules arrange as alternated sheets lying parallel to [010]. In addition, each set of sheets are separated by the layer of water molecules runing in same direction. The dihedral angle between mean plane of two thiadiazole rings is 10.24 (3)°. It could be indicated the effect of centroid-centroid interactions with the distances of 3.530 (3) and 3.600 (3)Å between the adjacent thidiazole rings in the same layer as depicted in Fig. 2. In the amide nitrogen protons form N3—H3A···O2ii [N3···O2ii = 2.953 (3) Å] and N3—H3B···N2iii [N3···N2iii = 2.981 (3) Å] intermolecular hydrogen bonds with oxygen atoms of water molecules and one nitrogen atom of thiadiazole ring of adjacent molecules. While another thiadiazole nitrogen atom forms hydrogen bonding interaction with another water molecule in packing, O1—H1A···N1i [O1···N1i = 2.872 (3) Å]. In addition, The packing is also stabilized by the another type of hydrogen bond, O—H···O, among water molecules [O1···O2iv = 2.780 (3) Å, O2···O1v = 2.867 (3) Å, O2···O1vi = 2.806 (3) Å; iv, v and vi are the symmetry codes as given in Table 1]. The hydrogen bonds are shown in Fig. 3. The interactions in packings are generated the three-dimensional interaction networks and the interaction views down three axes are depicted in Fig. 4, 5 and 6.For background to the pharmacutical properties of thiadiazoles, see: Chapleo et al.(1986; 1987); Stillings et al. (1986); Clerici et al. (2001). For their tribological behavior, see: Zhu et al. (2009) and for their pesticidal activity, see: Fan et al. (2010).
Data collection: SMART (Bruker, 1998); cell
SAINT (Bruker, 2003); data reduction: SAINT (Bruker, 2003); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: Mercury (Macrae et al., 2008); software used to prepare material for publication: Mercury (Macrae et al., 2008).Fig. 1. The molecular structure of (I) with displacement ellipsoids plotted at the 30% probability level. H atoms are omitted. | |
Fig. 2. Centriod-centriod interaction distances between thiadiazoline rings in packing plot down a axis. Water layers are omitted. | |
Fig. 3. The interactions of the [5,5'-amine-(2,2'-1,3,4-thiadiazole)] tetrahydrate compound. Symmetry code: i= x, y - 1,z; ii = 1 - x,y,1.5 - z; iii = 1 - x, y 2.5 - z; iv = 1 - x, y, 2.5 - z; v = x, -y, 1/2 + z; vi = 1/2 - x, 1/2 - y, 1 - z; vii = 1/2 - x, y - 1/2, 1 - z; viii = 1 - x, 1 - y, 2 - z; ix = 1/2 + x, y - 1/2, z; x = 1/2 + x, 1.5 - y, 1/2 - z. | |
Fig. 4. The interactions packing plot down a axis. | |
Fig. 5. The interactions packing plot down b axis. | |
Fig. 6. The interactions packing plot down c axis. |
C4H4N6S2·4H2O | F(000) = 568 |
Mr = 272.32 | Dx = 1.573 Mg m−3 |
Monoclinic, C2/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -C 2yc | Cell parameters from 1375 reflections |
a = 19.977 (6) Å | θ = 2.2–27.5° |
b = 6.678 (2) Å | µ = 0.48 mm−1 |
c = 9.328 (3) Å | T = 293 K |
β = 112.514 (6)° | Rod, colourless |
V = 1149.7 (6) Å3 | 0.29 × 0.06 × 0.03 mm |
Z = 4 |
Bruker APEX CCD diffractometer | 1015 independent reflections |
Radiation source: fine-focus sealed tube | 902 reflections with I > 2σ(I) |
Graphite monochromator | Rint = 0.040 |
Frames, each covering 0.3 ° in ω scans | θmax = 25.0°, θmin = 2.2° |
Absorption correction: multi-scan (SADABS; Bruker, 2003) | h = −23→23 |
Tmin = 0.659, Tmax = 1.000 | k = −7→7 |
5047 measured reflections | l = −11→11 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.034 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.091 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | w = 1/[σ2(Fo2) + (0.046P)2 + 0.8924P] where P = (Fo2 + 2Fc2)/3 |
1015 reflections | (Δ/σ)max < 0.001 |
91 parameters | Δρmax = 0.36 e Å−3 |
6 restraints | Δρmin = −0.29 e Å−3 |
C4H4N6S2·4H2O | V = 1149.7 (6) Å3 |
Mr = 272.32 | Z = 4 |
Monoclinic, C2/c | Mo Kα radiation |
a = 19.977 (6) Å | µ = 0.48 mm−1 |
b = 6.678 (2) Å | T = 293 K |
c = 9.328 (3) Å | 0.29 × 0.06 × 0.03 mm |
β = 112.514 (6)° |
Bruker APEX CCD diffractometer | 1015 independent reflections |
Absorption correction: multi-scan (SADABS; Bruker, 2003) | 902 reflections with I > 2σ(I) |
Tmin = 0.659, Tmax = 1.000 | Rint = 0.040 |
5047 measured reflections |
R[F2 > 2σ(F2)] = 0.034 | 6 restraints |
wR(F2) = 0.091 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.12 | Δρmax = 0.36 e Å−3 |
1015 reflections | Δρmin = −0.29 e Å−3 |
91 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against all reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on all data will be even larger. |
x | y | z | Uiso*/Ueq | ||
S1 | 0.40277 (3) | 0.22880 (9) | 0.80732 (6) | 0.0302 (2) | |
C1 | 0.49090 (11) | 0.2498 (3) | 0.8184 (2) | 0.0254 (5) | |
C2 | 0.43905 (11) | 0.2386 (3) | 1.0092 (2) | 0.0250 (5) | |
N1 | 0.53913 (9) | 0.2631 (2) | 0.9582 (2) | 0.0275 (4) | |
N2 | 0.51008 (10) | 0.2557 (3) | 1.0700 (2) | 0.0278 (4) | |
N3 | 0.39755 (11) | 0.2341 (3) | 1.0925 (2) | 0.0346 (5) | |
H3A | 0.3518 (10) | 0.196 (4) | 1.049 (3) | 0.042* | |
H3B | 0.4198 (14) | 0.236 (4) | 1.194 (2) | 0.042* | |
O1 | 0.30903 (9) | 0.3504 (3) | 0.3923 (2) | 0.0468 (5) | |
H1A | 0.3539 (10) | 0.338 (5) | 0.434 (3) | 0.056* | |
H1B | 0.2881 (16) | 0.242 (3) | 0.391 (4) | 0.056* | |
O2 | 0.25880 (9) | 1.0305 (3) | 0.9186 (2) | 0.0451 (5) | |
H2A | 0.2393 (14) | 0.997 (5) | 0.977 (3) | 0.054* | |
H2B | 0.2376 (14) | 1.067 (4) | 0.827 (2) | 0.054* |
U11 | U22 | U33 | U12 | U13 | U23 | |
S1 | 0.0234 (3) | 0.0449 (4) | 0.0199 (3) | 0.0004 (2) | 0.0057 (2) | −0.0007 (2) |
C1 | 0.0253 (11) | 0.0284 (11) | 0.0227 (11) | 0.0003 (8) | 0.0096 (9) | 0.0001 (8) |
C2 | 0.0270 (11) | 0.0256 (11) | 0.0206 (11) | 0.0016 (8) | 0.0071 (9) | −0.0001 (8) |
N1 | 0.0273 (10) | 0.0324 (10) | 0.0230 (10) | 0.0002 (7) | 0.0100 (8) | 0.0004 (7) |
N2 | 0.0269 (9) | 0.0364 (11) | 0.0203 (9) | 0.0005 (7) | 0.0093 (8) | 0.0002 (7) |
N3 | 0.0275 (10) | 0.0542 (13) | 0.0232 (10) | −0.0021 (8) | 0.0109 (9) | −0.0003 (9) |
O1 | 0.0292 (9) | 0.0543 (12) | 0.0501 (11) | −0.0052 (8) | 0.0076 (8) | 0.0054 (9) |
O2 | 0.0356 (10) | 0.0546 (11) | 0.0420 (11) | −0.0013 (8) | 0.0113 (8) | 0.0006 (9) |
S1—C1 | 1.729 (2) | N3—H3A | 0.882 (17) |
S1—C2 | 1.741 (2) | N3—H3B | 0.875 (17) |
C1—N1 | 1.294 (3) | O1—H1A | 0.834 (18) |
C1—C1i | 1.455 (4) | O1—H1B | 0.833 (17) |
C2—N2 | 1.316 (3) | O2—H2A | 0.815 (17) |
C2—N3 | 1.337 (3) | O2—H2B | 0.834 (17) |
N1—N2 | 1.375 (3) | ||
C1—S1—C2 | 86.53 (10) | C2—N2—N1 | 111.99 (17) |
C1—S1—C2 | 86.53 (10) | C2—N2—N1 | 111.99 (17) |
N1—C1—C1i | 122.9 (2) | C2—N3—H3A | 120.2 (17) |
N1—C1—S1 | 114.49 (16) | C2—N3—H3A | 120.2 (17) |
C1i—C1—S1 | 122.6 (2) | C2—N3—H3B | 117.0 (19) |
N2—C2—N3 | 123.9 (2) | C2—N3—H3B | 117.0 (19) |
N2—C2—S1 | 113.78 (16) | H3A—N3—H3B | 121 (3) |
N3—C2—S1 | 122.30 (17) | H1A—O1—H1B | 111 (3) |
C1—N1—N2 | 113.20 (17) | H2A—O2—H2B | 126 (3) |
C2—S1—C1—N1 | −0.35 (15) | C1i—C1—N1—N2 | −178.63 (10) |
C2—S1—C1—N1 | −0.35 (15) | S1—C1—N1—N2 | 0.6 (2) |
C2—S1—C1—C1i | 178.91 (8) | N3—C2—N2—N1 | −178.00 (19) |
C2—S1—C1—C1i | 178.91 (8) | S1—C2—N2—N1 | 0.4 (2) |
C1—S1—C2—N2 | −0.02 (16) | C1—N1—N2—C2 | −0.6 (2) |
C1—S1—C2—N3 | 178.36 (19) | C1—N1—N2—C2 | −0.6 (2) |
Symmetry code: (i) −x+1, y, −z+3/2. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3A···O2ii | 0.88 (2) | 2.11 (2) | 2.953 (3) | 161 (2) |
N3—H3B···N2iii | 0.88 (2) | 2.12 (2) | 2.981 (3) | 170 (3) |
O1—H1A···N1i | 0.83 (2) | 2.05 (2) | 2.872 (3) | 171 (3) |
O1—H1B···O2iv | 0.83 (2) | 1.96 (2) | 2.780 (3) | 168 (3) |
O2—H2A···O1v | 0.82 (2) | 2.07 (2) | 2.867 (3) | 167 (3) |
O2—H2B···O1vi | 0.83 (2) | 1.97 (2) | 2.806 (3) | 178 (3) |
Symmetry codes: (i) −x+1, y, −z+3/2; (ii) x, y−1, z; (iii) −x+1, y, −z+5/2; (iv) x, −y+1, z−1/2; (v) −x+1/2, y+1/2, −z+3/2; (vi) −x+1/2, −y+3/2, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C4H4N6S2·4H2O |
Mr | 272.32 |
Crystal system, space group | Monoclinic, C2/c |
Temperature (K) | 293 |
a, b, c (Å) | 19.977 (6), 6.678 (2), 9.328 (3) |
β (°) | 112.514 (6) |
V (Å3) | 1149.7 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.48 |
Crystal size (mm) | 0.29 × 0.06 × 0.03 |
Data collection | |
Diffractometer | Bruker APEX CCD |
Absorption correction | Multi-scan (SADABS; Bruker, 2003) |
Tmin, Tmax | 0.659, 1.000 |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5047, 1015, 902 |
Rint | 0.040 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.034, 0.091, 1.12 |
No. of reflections | 1015 |
No. of parameters | 91 |
No. of restraints | 6 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.36, −0.29 |
Computer programs: SMART (Bruker, 1998), SAINT (Bruker, 2003), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), Mercury (Macrae et al., 2008).
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3A···O2i | 0.882 (17) | 2.105 (18) | 2.953 (3) | 161 (2) |
N3—H3B···N2ii | 0.875 (17) | 2.116 (18) | 2.981 (3) | 170 (3) |
O1—H1A···N1iii | 0.834 (18) | 2.045 (19) | 2.872 (3) | 171 (3) |
O1—H1B···O2iv | 0.833 (17) | 1.960 (18) | 2.780 (3) | 168 (3) |
O2—H2A···O1v | 0.815 (17) | 2.066 (19) | 2.867 (3) | 167 (3) |
O2—H2B···O1vi | 0.834 (17) | 1.972 (18) | 2.806 (3) | 178 (3) |
Symmetry codes: (i) x, y−1, z; (ii) −x+1, y, −z+5/2; (iii) −x+1, y, −z+3/2; (iv) x, −y+1, z−1/2; (v) −x+1/2, y+1/2, −z+3/2; (vi) −x+1/2, −y+3/2, −z+1. |
Acknowledgements
We gratefully acknowledge financial support from the Center of Excellence for Innovation in Chemistry (PERCH-CIC), the Commission on Higher Education, Ministry of Education, and the Department of Chemistry, Faculty of Science, Prince of Songkla University.
References
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Most of Shift bases, five membered heterocyclic thiadiazole derivatives containg N and S atoms were studied and reported due to the various applications. Different classes of thiadiazole compounds were found to be pharmacologically active using antihypertensive, anticonvulsant (Chapleo et al., 1986; 1987; Stillings et al., 1986), anti-depressant and anxiolytic activities (Clerici et al., 2001). Recently, the friction and wear properties of 1,3,4-thiadiazole-2-thione derivatives have attracted a considerable amount of research effort. The compounds were synthesized and tested their tribological behavior as additive in rapeseed oil (ROS) to possess good thermal stabilities and anti-corrosive abilities and excellent load-carrying capacities. Moreover, they have good anti-wear and friction-reducing properties (Zhu et al., 2009). In the agriculture, these compounds are widely use as pesticides activities and they have been comercialed as agrochemicals (Fan et al., 2010)
In the present work, the title compound is the by-product of the reaction between copper(I) thiocyanate and 5-amino-1,3,4-thiadiazole-2-thiol ligand. Its crystal structure is reported here. The compound crystallizes in monoclinic system, space group C2/c. The asymetric unit contains half the molecules of the title compound. The crystal structure consists of discrete molecules (Fig. 1) and 5,5'-amine-(2,2'-1,3,4-thiadiazole) molecules arrange as alternated sheets lying parallel to [010]. In addition, each set of sheets are separated by the layer of water molecules runing in same direction. The dihedral angle between mean plane of two thiadiazole rings is 10.24 (3)°. It could be indicated the effect of centroid-centroid interactions with the distances of 3.530 (3) and 3.600 (3)Å between the adjacent thidiazole rings in the same layer as depicted in Fig. 2. In the crystal lattice, amide nitrogen protons form N3—H3A···O2ii [N3···O2ii = 2.953 (3) Å] and N3—H3B···N2iii [N3···N2iii = 2.981 (3) Å] intermolecular hydrogen bonds with oxygen atoms of water molecules and one nitrogen atom of thiadiazole ring of adjacent molecules. While another thiadiazole nitrogen atom forms hydrogen bonding interaction with another water molecule in packing, O1—H1A···N1i [O1···N1i = 2.872 (3) Å]. In addition, The packing is also stabilized by the another type of hydrogen bond, O—H···O, among water molecules [O1···O2iv = 2.780 (3) Å, O2···O1v = 2.867 (3) Å, O2···O1vi = 2.806 (3) Å; iv, v and vi are the symmetry codes as given in Table 1]. The hydrogen bonds are shown in Fig. 3. The interactions in packings are generated the three-dimensional interaction networks and the interaction views down three axes are depicted in Fig. 4, 5 and 6.