organic compounds
2-(4-Methoxyphenoxy)pyrazine
aDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: edward.tiekink@gmail.com
In the title compound, C11H10N2O2, the aromatic rings are almost orthogonal to each other [dihedral angle = 86.97 (8)°], with the benzene ring orientated to face one of the pyrazine N atoms. In the crystal, centrosymmetrically related pairs are connected via pairs of C—H⋯π interactions and the dimeric units thus formed pack into undulating layers that stack along the a axis.
Related literature
For background to the fluorescence properties of compounds related to the title compound, see: Kawai et al. (2001); Abdullah (2005). For a related structure, see: Nasir et al. (2010).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S1600536810031946/hb5602sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810031946/hb5602Isup2.hkl
2-Chloropyrazine (2.5 g, 45 mmol) and 4-methoxyphenol (5.6 g, 45 mmol) were refluxed in THF (10 ml) for 5 h. The residue was dissolved in minimum of water (10 ml) and extracted with ether (3 x 10 ml). The ethereal layer was washed with water and dried over anyhydrous sodium sulfate. Recrystallization from ethyl acetate yielded colourless blocks of (I) after a few days.
Carbon-bound H-atoms were placed in calculated positions (C—H 0.93 to 0.96 Å) and were included in the
in the riding model approximation, with Uiso(H) set to 1.2 to 1.5Uequiv(C). Some disorder was noted in the benzene ring (manifested in the shorter than usual average C–C bond distance of 1.37 Å). However, multiple sites were not resolved for this ring.On-going structural studies of heterocyclic N-containing derivatives (Nasir et al., 2010) are motivated by an investigation of their fluorescence properties (Kawai et al., 2001; Abdullah, 2005). In this connection, the title pyrazine derivative, (I), was investigated.
With respect to the benzene ring, the pyrazine ring occupies an orthogonal position with the dihedral angle formed between the rings being 86.97 (8) °. The least-squares plane through the pyrazine ring is aligned along the C5···C8 axis of the benzene ring, an arrangement that allows the benzene ring to be directed towards the pyrazine-N1 atom. The C11–O2–C8–C7 torsion angle of -176.93 (14) ° indicates the methoxy group is co-planar with the benzene ring to which it is attached.
The most prominent intermolecular interaction operating in the π. This occurs between centrosymmetrically related molecules and involves a benzene-H and the pyrazine ring, Table 1. The dimeric aggregates pack into undulating layers in the bc plane, Fig. 2, which stack along the a axis, Fig. 3.
of (I) is of the type C–H···For background to the fluorescence properties of compounds related to the title compound, see: Kawai et al. (2001); Abdullah (2005). For a related structure, see: Nasir et al. (2010).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006); software used to prepare material for publication: publCIF (Westrip, 2010).C11H10N2O2 | F(000) = 424 |
Mr = 202.21 | Dx = 1.347 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 1293 reflections |
a = 5.8783 (2) Å | θ = 2.3–22.4° |
b = 10.9298 (4) Å | µ = 0.10 mm−1 |
c = 15.6430 (6) Å | T = 293 K |
β = 97.109 (2)° | Block, colourless |
V = 997.32 (6) Å3 | 0.35 × 0.20 × 0.10 mm |
Z = 4 |
Bruker SMART APEX CCD diffractometer | 1244 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.026 |
Graphite monochromator | θmax = 25.0°, θmin = 2.3° |
ω scans | h = −6→6 |
5515 measured reflections | k = −12→12 |
1743 independent reflections | l = −18→18 |
Refinement on F2 | Secondary atom site location: difference Fourier map |
Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
R[F2 > 2σ(F2)] = 0.036 | H-atom parameters constrained |
wR(F2) = 0.100 | w = 1/[σ2(Fo2) + (0.0486P)2 + 0.0504P] where P = (Fo2 + 2Fc2)/3 |
S = 1.05 | (Δ/σ)max = 0.001 |
1743 reflections | Δρmax = 0.13 e Å−3 |
138 parameters | Δρmin = −0.12 e Å−3 |
0 restraints | Extinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4 |
Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.042 (4) |
C11H10N2O2 | V = 997.32 (6) Å3 |
Mr = 202.21 | Z = 4 |
Monoclinic, P21/c | Mo Kα radiation |
a = 5.8783 (2) Å | µ = 0.10 mm−1 |
b = 10.9298 (4) Å | T = 293 K |
c = 15.6430 (6) Å | 0.35 × 0.20 × 0.10 mm |
β = 97.109 (2)° |
Bruker SMART APEX CCD diffractometer | 1244 reflections with I > 2σ(I) |
5515 measured reflections | Rint = 0.026 |
1743 independent reflections |
R[F2 > 2σ(F2)] = 0.036 | 0 restraints |
wR(F2) = 0.100 | H-atom parameters constrained |
S = 1.05 | Δρmax = 0.13 e Å−3 |
1743 reflections | Δρmin = −0.12 e Å−3 |
138 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.80138 (19) | 0.41576 (11) | 0.38163 (8) | 0.0650 (4) | |
O2 | 0.0132 (2) | 0.59432 (11) | 0.19506 (8) | 0.0638 (4) | |
N1 | 0.6059 (2) | 0.26379 (12) | 0.44535 (9) | 0.0494 (4) | |
N2 | 1.0286 (2) | 0.18218 (14) | 0.52555 (9) | 0.0599 (4) | |
C1 | 0.7989 (3) | 0.31704 (15) | 0.43404 (10) | 0.0442 (4) | |
C2 | 1.0109 (3) | 0.27760 (17) | 0.47408 (11) | 0.0544 (5) | |
H2 | 1.1426 | 0.3197 | 0.4642 | 0.065* | |
C3 | 0.8320 (3) | 0.12604 (17) | 0.53716 (12) | 0.0579 (5) | |
H3 | 0.8364 | 0.0578 | 0.5729 | 0.069* | |
C4 | 0.6268 (3) | 0.16632 (15) | 0.49808 (12) | 0.0559 (5) | |
H4 | 0.4948 | 0.1247 | 0.5082 | 0.067* | |
C5 | 0.5920 (3) | 0.45725 (15) | 0.33748 (11) | 0.0489 (4) | |
C6 | 0.5262 (3) | 0.41868 (15) | 0.25481 (12) | 0.0548 (5) | |
H6 | 0.6122 | 0.3603 | 0.2299 | 0.066* | |
C7 | 0.3328 (3) | 0.46665 (16) | 0.20906 (11) | 0.0554 (5) | |
H7 | 0.2881 | 0.4407 | 0.1529 | 0.066* | |
C8 | 0.2035 (3) | 0.55333 (14) | 0.24574 (10) | 0.0458 (4) | |
C9 | 0.2718 (3) | 0.59135 (15) | 0.32910 (11) | 0.0516 (5) | |
H9 | 0.1863 | 0.6494 | 0.3547 | 0.062* | |
C10 | 0.4674 (3) | 0.54303 (16) | 0.37434 (10) | 0.0548 (5) | |
H10 | 0.5145 | 0.5692 | 0.4303 | 0.066* | |
C11 | −0.1195 (3) | 0.68815 (16) | 0.22838 (12) | 0.0637 (5) | |
H11A | −0.2509 | 0.7059 | 0.1875 | 0.096* | |
H11B | −0.0278 | 0.7606 | 0.2386 | 0.096* | |
H11C | −0.1691 | 0.6611 | 0.2815 | 0.096* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0391 (7) | 0.0747 (9) | 0.0790 (9) | −0.0056 (6) | −0.0008 (6) | 0.0292 (7) |
O2 | 0.0585 (8) | 0.0683 (8) | 0.0606 (8) | 0.0168 (6) | −0.0080 (6) | −0.0020 (6) |
N1 | 0.0386 (8) | 0.0495 (8) | 0.0588 (9) | 0.0018 (6) | 0.0009 (6) | 0.0061 (7) |
N2 | 0.0492 (9) | 0.0715 (10) | 0.0566 (9) | 0.0120 (8) | −0.0032 (7) | 0.0042 (8) |
C1 | 0.0373 (9) | 0.0497 (10) | 0.0447 (9) | 0.0013 (7) | 0.0010 (7) | 0.0008 (8) |
C2 | 0.0382 (10) | 0.0698 (12) | 0.0539 (10) | 0.0005 (8) | 0.0003 (8) | −0.0011 (10) |
C3 | 0.0598 (12) | 0.0538 (11) | 0.0584 (11) | 0.0097 (9) | 0.0007 (9) | 0.0081 (9) |
C4 | 0.0482 (11) | 0.0502 (10) | 0.0682 (12) | 0.0001 (8) | 0.0035 (9) | 0.0089 (9) |
C5 | 0.0404 (10) | 0.0500 (10) | 0.0553 (10) | −0.0039 (8) | 0.0028 (8) | 0.0146 (9) |
C6 | 0.0483 (11) | 0.0525 (11) | 0.0641 (11) | 0.0066 (8) | 0.0086 (9) | −0.0053 (9) |
C7 | 0.0571 (12) | 0.0596 (11) | 0.0484 (10) | 0.0020 (9) | 0.0018 (8) | −0.0104 (9) |
C8 | 0.0450 (10) | 0.0440 (9) | 0.0476 (9) | −0.0007 (7) | 0.0026 (8) | 0.0036 (8) |
C9 | 0.0553 (11) | 0.0511 (10) | 0.0490 (10) | 0.0072 (8) | 0.0082 (8) | −0.0028 (8) |
C10 | 0.0591 (11) | 0.0640 (11) | 0.0401 (9) | −0.0019 (9) | 0.0017 (8) | −0.0008 (9) |
C11 | 0.0519 (11) | 0.0621 (11) | 0.0772 (13) | 0.0109 (9) | 0.0088 (10) | 0.0112 (10) |
O1—C1 | 1.3563 (19) | C5—C10 | 1.361 (2) |
O1—C5 | 1.4096 (19) | C5—C6 | 1.370 (2) |
O2—C8 | 1.3639 (18) | C6—C7 | 1.371 (2) |
O2—C11 | 1.426 (2) | C6—H6 | 0.9300 |
N1—C1 | 1.3062 (19) | C7—C8 | 1.383 (2) |
N1—C4 | 1.344 (2) | C7—H7 | 0.9300 |
N2—C2 | 1.314 (2) | C8—C9 | 1.380 (2) |
N2—C3 | 1.341 (2) | C9—C10 | 1.378 (2) |
C1—C2 | 1.392 (2) | C9—H9 | 0.9300 |
C2—H2 | 0.9300 | C10—H10 | 0.9300 |
C3—C4 | 1.357 (2) | C11—H11A | 0.9600 |
C3—H3 | 0.9300 | C11—H11B | 0.9600 |
C4—H4 | 0.9300 | C11—H11C | 0.9600 |
C1—O1—C5 | 118.56 (12) | C5—C6—H6 | 120.2 |
C8—O2—C11 | 118.05 (13) | C7—C6—H6 | 120.2 |
C1—N1—C4 | 114.95 (14) | C6—C7—C8 | 120.56 (16) |
C2—N2—C3 | 116.22 (15) | C6—C7—H7 | 119.7 |
N1—C1—O1 | 120.72 (14) | C8—C7—H7 | 119.7 |
N1—C1—C2 | 123.03 (16) | O2—C8—C9 | 124.90 (15) |
O1—C1—C2 | 116.26 (14) | O2—C8—C7 | 115.92 (15) |
N2—C2—C1 | 121.37 (16) | C9—C8—C7 | 119.17 (16) |
N2—C2—H2 | 119.3 | C10—C9—C8 | 119.77 (15) |
C1—C2—H2 | 119.3 | C10—C9—H9 | 120.1 |
N2—C3—C4 | 121.60 (17) | C8—C9—H9 | 120.1 |
N2—C3—H3 | 119.2 | C5—C10—C9 | 120.31 (16) |
C4—C3—H3 | 119.2 | C5—C10—H10 | 119.8 |
N1—C4—C3 | 122.83 (16) | C9—C10—H10 | 119.8 |
N1—C4—H4 | 118.6 | O2—C11—H11A | 109.5 |
C3—C4—H4 | 118.6 | O2—C11—H11B | 109.5 |
C10—C5—C6 | 120.54 (16) | H11A—C11—H11B | 109.5 |
C10—C5—O1 | 119.79 (16) | O2—C11—H11C | 109.5 |
C6—C5—O1 | 119.42 (16) | H11A—C11—H11C | 109.5 |
C5—C6—C7 | 119.64 (16) | H11B—C11—H11C | 109.5 |
C4—N1—C1—O1 | 179.38 (14) | C10—C5—C6—C7 | −0.2 (3) |
C4—N1—C1—C2 | −0.8 (2) | O1—C5—C6—C7 | −174.50 (14) |
C5—O1—C1—N1 | −2.0 (2) | C5—C6—C7—C8 | −0.2 (3) |
C5—O1—C1—C2 | 178.13 (14) | C11—O2—C8—C9 | 3.5 (2) |
C3—N2—C2—C1 | −0.2 (2) | C11—O2—C8—C7 | −176.93 (14) |
N1—C1—C2—N2 | 0.8 (3) | C6—C7—C8—O2 | −179.41 (15) |
O1—C1—C2—N2 | −179.37 (15) | C6—C7—C8—C9 | 0.2 (3) |
C2—N2—C3—C4 | −0.3 (3) | O2—C8—C9—C10 | 179.76 (15) |
C1—N1—C4—C3 | 0.3 (2) | C7—C8—C9—C10 | 0.2 (2) |
N2—C3—C4—N1 | 0.3 (3) | C6—C5—C10—C9 | 0.6 (3) |
C1—O1—C5—C10 | 90.59 (19) | O1—C5—C10—C9 | 174.88 (14) |
C1—O1—C5—C6 | −95.10 (18) | C8—C9—C10—C5 | −0.6 (3) |
Cg1 is the centroid of the N1,N2,C1–C4 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C9—H9···Cg1i | 0.93 | 2.87 | 3.6326 (18) | 140 |
Symmetry code: (i) −x+1, −y+1, −z+1. |
Experimental details
Crystal data | |
Chemical formula | C11H10N2O2 |
Mr | 202.21 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 293 |
a, b, c (Å) | 5.8783 (2), 10.9298 (4), 15.6430 (6) |
β (°) | 97.109 (2) |
V (Å3) | 997.32 (6) |
Z | 4 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.35 × 0.20 × 0.10 |
Data collection | |
Diffractometer | Bruker SMART APEX CCD |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 5515, 1743, 1244 |
Rint | 0.026 |
(sin θ/λ)max (Å−1) | 0.595 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.036, 0.100, 1.05 |
No. of reflections | 1743 |
No. of parameters | 138 |
H-atom treatment | H-atom parameters constrained |
Δρmax, Δρmin (e Å−3) | 0.13, −0.12 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997) and DIAMOND (Brandenburg, 2006), publCIF (Westrip, 2010).
Cg1 is the centroid of the N1,N2,C1–C4 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
C9—H9···Cg1i | 0.93 | 2.87 | 3.6326 (18) | 140 |
Symmetry code: (i) −x+1, −y+1, −z+1. |
Footnotes
‡Additional correspondence author, e-mail: zana@um.edu.my.
Acknowledgements
AZ thanks the Ministry of Higher Education, Malaysia, for research grants (FP047/2008 C and FP001/2010 A). The authors are also grateful to the University of Malaya for support of the crystallographic facility.
References
Abdullah, Z. (2005). Int. J. Chem. Sci. 3, 9–15. CAS Google Scholar
Brandenburg, K. (2006). DIAMOND. Crystal Impact GbR, Bonn, Germany. Google Scholar
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
On-going structural studies of heterocyclic N-containing derivatives (Nasir et al., 2010) are motivated by an investigation of their fluorescence properties (Kawai et al., 2001; Abdullah, 2005). In this connection, the title pyrazine derivative, (I), was investigated.
With respect to the benzene ring, the pyrazine ring occupies an orthogonal position with the dihedral angle formed between the rings being 86.97 (8) °. The least-squares plane through the pyrazine ring is aligned along the C5···C8 axis of the benzene ring, an arrangement that allows the benzene ring to be directed towards the pyrazine-N1 atom. The C11–O2–C8–C7 torsion angle of -176.93 (14) ° indicates the methoxy group is co-planar with the benzene ring to which it is attached.
The most prominent intermolecular interaction operating in the crystal structure of (I) is of the type C–H···π. This occurs between centrosymmetrically related molecules and involves a benzene-H and the pyrazine ring, Table 1. The dimeric aggregates pack into undulating layers in the bc plane, Fig. 2, which stack along the a axis, Fig. 3.