organic compounds
N-(4-Methylphenyl)-3-nitropyridin-2-amine1
aDepartment of Chemistry, University of Malaya, 50603 Kuala Lumpur, Malaysia
*Correspondence e-mail: edward.tiekink@gmail.com
Two independent molecules comprise the 12H11N3O2. These differ in terms of the relative orientations of the benzene rings as seen in the respective dihedral angles formed between the pyridine and benzene rings [17.42 (16) and 34.64 (16)°]. Both molecules are twisted about the amine–tolyl N—C bonds [respective torsion angles = 22.3 (5) and 35.9 (5)°] but only about the amine–pyridine N—C bond in the first independent molecule [respective torsion angles = −11.7 (5) and 0.8 (5)°]. Intramolecular N—H⋯O hydrogen bonds preclude the amine H atoms from forming significant intermolecular interactions. The crystal packing features intermolecular C—H⋯O and C—H⋯π and π–π [centroid–centroid distance: pyridine–benzene = 3.6442 (19) Å and pyridine–pyridine = 3.722 (2) Å] contacts.
of the title compound, CRelated literature
For background to the fluorescence properties of compounds related to the title compound, see: Kawai et al. (2001); Abdullah (2005). For the structures of related pyrimidine amine derivatives, see: Badaruddin et al., (2009); Fairuz et al. (2010).
Experimental
Crystal data
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Data collection
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Refinement
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Data collection: APEX2 (Bruker, 2009); cell SAINT (Bruker, 2009); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997), DIAMOND (Brandenburg, 2006) and Qmol (Gans & Shalloway, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).
Supporting information
https://doi.org/10.1107/S1600536810033040/hg2703sup1.cif
contains datablocks global, I. DOI:Structure factors: contains datablock I. DOI: https://doi.org/10.1107/S1600536810033040/hg2703Isup2.hkl
2-Chloro-3-nitro-pyridine (0.7899 g, 0.005 mol) and p-toluidine (0.536 g, 0.005 mol) were refluxed in 5 ml ethanol for 5.5 h at 351 K. The mixture was cooled. The residue was then dissolved in a minimum volume of water (10 ml) and extracted with ether (3 x 10 ml). The ethereal layer was washed with water and dried over anhydrous sodium sulfate. Evaporation gave a reddish solid and recrystallization using ethyl acetate yielded red crystals.
Carbon-bound H-atoms were placed in calculated positions (C—H 0.95 to 0.98 Å) and were included in the
in the riding model approximation, with Uiso(H) set to 1.2 to 1.5Uequiv(C). The N-bound H-atoms were located in a difference Fourier map but were were refined with a distance restraint of N–H = 0.86±0.01 Å, and with unrestricted Uiso(H).Studies of pyridine and pyrimidine derivatives related to the title compound are of interest owing to their putative fluorescence properties (Kawai et al. 2001; Abdullah, 2005). As a continuation of structural studies on this class of N-heterocycles (Badaruddin et al., 2009; Fairuz et al., 2010), the title compound, (I), was investigated.
Two independent molecules comprise the
of (I), Figs 1 and 2. While the geometric parameters are in close agreement [r.m.s. deviation of bond distances and angles = 0.0080 Å and 0.849 °, respectively], these differ non-trivially in their conformations. So, while the pyridine groups are virtually super-imposable, the benzene rings are not, Fig. 3. This difference is quantified in the dihedral angles formed between the pyridine and benzene rings, i.e. N2,C1–C5/C6–C11 = 17.42 (16) ° and N5,C13–C17/C18–C23 = 34.64 (16) °. These indicate that there are also twists in the molecules as evidenced by the C6–N3–C5–N2 torsion angle of -11.7 (5) ° and, especially, the C5–N3–C6–C11 torsion angle of 22.3 (5) °. The equivalent torsion angles for the second independent molecule of C18–N6–C17–N5 = 0.8 (5) ° and C17–N6–C18–C23 = 35.9 (5) ° also highlight the differences between the molecules. The nitro groups are co-planar with the pyridine rings to which they are connected as indicated by the O1–N1–C1–C5 and O3–N4–C13–C17 torsion angles of 1.5 (5) and -1.1 (5) °, respectively. Close intramolecular N–H···O and C–H···N interactions are noted, Table 1.The most notable intermolecular interactions in the π and π–π [ring centroid(N2,C1–C5)···centroid(C18–C23) = 3.6442 (19) Å and ring centroid(N5,C13–C17)···centroid(N5,C13–C17)i = 3.722 (2) Å for i: -x, 1 - y, -z] contacts. These serve to connect molecules into the three-dimensional structure, Fig. 4.
are of the type C–H···O [which connect the molecules comprising the asymmetric unit], C–H···For background to the fluorescence properties of compounds related to the title compound, see: Kawai et al. (2001); Abdullah (2005). For the structures of related pyrimidine amine derivatives, see: Badaruddin et al., (2009); Fairuz et al. (2010).
Data collection: APEX2 (Bruker, 2009); cell
SAINT (Bruker, 2009); data reduction: SAINT (Bruker, 2009); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008); molecular graphics: ORTEP-3 (Farrugia, 1997), DIAMOND (Brandenburg, 2006) and Qmol (Gans & Shalloway, 2001); software used to prepare material for publication: publCIF (Westrip, 2010).Fig. 1. The molecular structure of the first independent molecule in (I) showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level. | |
Fig. 2. The molecular structure of the second independent molecule in (I) showing the atom-labelling scheme and displacement ellipsoids at the 50% probability level. | |
Fig. 3. Overlay diagram of the first independent molecule (shown in red) and the second independent molecule (shown in blue). | |
Fig. 4. Unit-cell contents for (I) shown in projection down the a axis. The C–H···π and π–π contacts are shown as blue and purple dashed lines, respectively. The C–H···O interactions are largely obscured in this projection. |
C12H11N3O2 | F(000) = 960 |
Mr = 229.24 | Dx = 1.432 Mg m−3 |
Monoclinic, P21/c | Mo Kα radiation, λ = 0.71073 Å |
Hall symbol: -P 2ybc | Cell parameters from 2221 reflections |
a = 10.6557 (12) Å | θ = 3.0–27.8° |
b = 7.1415 (8) Å | µ = 0.10 mm−1 |
c = 27.958 (3) Å | T = 100 K |
β = 91.310 (2)° | Plate, red |
V = 2127.0 (4) Å3 | 0.35 × 0.35 × 0.05 mm |
Z = 8 |
Bruker SMART APEX diffractometer | 3344 reflections with I > 2σ(I) |
Radiation source: fine-focus sealed tube | Rint = 0.045 |
Graphite monochromator | θmax = 27.5°, θmin = 1.5° |
ω scans | h = −13→11 |
13178 measured reflections | k = −8→9 |
4804 independent reflections | l = −36→36 |
Refinement on F2 | Primary atom site location: structure-invariant direct methods |
Least-squares matrix: full | Secondary atom site location: difference Fourier map |
R[F2 > 2σ(F2)] = 0.048 | Hydrogen site location: inferred from neighbouring sites |
wR(F2) = 0.146 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | w = 1/[σ2(Fo2) + (0.0685P)2 + 0.8145P] where P = (Fo2 + 2Fc2)/3 |
4804 reflections | (Δ/σ)max = 0.001 |
317 parameters | Δρmax = 0.30 e Å−3 |
2 restraints | Δρmin = −0.28 e Å−3 |
C12H11N3O2 | V = 2127.0 (4) Å3 |
Mr = 229.24 | Z = 8 |
Monoclinic, P21/c | Mo Kα radiation |
a = 10.6557 (12) Å | µ = 0.10 mm−1 |
b = 7.1415 (8) Å | T = 100 K |
c = 27.958 (3) Å | 0.35 × 0.35 × 0.05 mm |
β = 91.310 (2)° |
Bruker SMART APEX diffractometer | 3344 reflections with I > 2σ(I) |
13178 measured reflections | Rint = 0.045 |
4804 independent reflections |
R[F2 > 2σ(F2)] = 0.048 | 2 restraints |
wR(F2) = 0.146 | H atoms treated by a mixture of independent and constrained refinement |
S = 1.04 | Δρmax = 0.30 e Å−3 |
4804 reflections | Δρmin = −0.28 e Å−3 |
317 parameters |
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes. |
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
x | y | z | Uiso*/Ueq | ||
O1 | 0.5737 (2) | 0.6059 (3) | 0.07334 (8) | 0.0224 (6) | |
O2 | 0.3802 (2) | 0.6139 (4) | 0.04820 (8) | 0.0265 (6) | |
O3 | 0.1554 (2) | 0.1650 (4) | −0.07299 (8) | 0.0286 (6) | |
O4 | −0.0348 (2) | 0.2379 (4) | −0.09457 (8) | 0.0286 (6) | |
N1 | 0.4595 (3) | 0.5848 (4) | 0.08003 (9) | 0.0186 (6) | |
N2 | 0.4564 (3) | 0.4326 (4) | 0.20794 (9) | 0.0193 (6) | |
N3 | 0.6278 (2) | 0.5089 (4) | 0.16220 (9) | 0.0163 (6) | |
N4 | 0.0469 (3) | 0.2118 (4) | −0.06319 (9) | 0.0207 (6) | |
N5 | 0.0665 (3) | 0.2476 (4) | 0.06993 (9) | 0.0200 (6) | |
N6 | 0.2219 (3) | 0.1555 (4) | 0.01848 (9) | 0.0191 (6) | |
C1 | 0.4176 (3) | 0.5224 (4) | 0.12647 (10) | 0.0171 (7) | |
C2 | 0.2897 (3) | 0.4973 (5) | 0.13170 (11) | 0.0195 (7) | |
H2 | 0.2331 | 0.5196 | 0.1056 | 0.023* | |
C3 | 0.2457 (3) | 0.4396 (5) | 0.17510 (11) | 0.0206 (7) | |
H3A | 0.1586 | 0.4213 | 0.1798 | 0.025* | |
C4 | 0.3327 (3) | 0.4092 (5) | 0.21164 (11) | 0.0211 (7) | |
H4 | 0.3022 | 0.3687 | 0.2416 | 0.025* | |
C5 | 0.5016 (3) | 0.4879 (4) | 0.16576 (11) | 0.0161 (7) | |
C6 | 0.7235 (3) | 0.5118 (4) | 0.19792 (11) | 0.0154 (7) | |
C7 | 0.8350 (3) | 0.5993 (4) | 0.18500 (11) | 0.0169 (7) | |
H7 | 0.8427 | 0.6476 | 0.1535 | 0.020* | |
C8 | 0.9339 (3) | 0.6166 (5) | 0.21729 (11) | 0.0185 (7) | |
H8 | 1.0089 | 0.6759 | 0.2076 | 0.022* | |
C9 | 0.9263 (3) | 0.5489 (5) | 0.26396 (11) | 0.0179 (7) | |
C10 | 0.8168 (3) | 0.4554 (5) | 0.27559 (11) | 0.0184 (7) | |
H10 | 0.8106 | 0.4034 | 0.3067 | 0.022* | |
C11 | 0.7155 (3) | 0.4345 (5) | 0.24348 (11) | 0.0184 (7) | |
H11 | 0.6424 | 0.3686 | 0.2526 | 0.022* | |
C12 | 1.0323 (3) | 0.5790 (5) | 0.29973 (11) | 0.0224 (7) | |
H12A | 1.0097 | 0.5253 | 0.3306 | 0.034* | |
H12B | 1.0478 | 0.7135 | 0.3035 | 0.034* | |
H12C | 1.1083 | 0.5178 | 0.2883 | 0.034* | |
C13 | 0.0149 (3) | 0.2401 (5) | −0.01373 (11) | 0.0183 (7) | |
C14 | −0.1058 (3) | 0.3001 (5) | −0.00485 (12) | 0.0212 (7) | |
H14 | −0.1649 | 0.3152 | −0.0305 | 0.025* | |
C15 | −0.1398 (3) | 0.3376 (5) | 0.04115 (12) | 0.0220 (7) | |
H15 | −0.2214 | 0.3817 | 0.0482 | 0.026* | |
C16 | −0.0491 (3) | 0.3079 (5) | 0.07704 (12) | 0.0222 (7) | |
H16 | −0.0720 | 0.3328 | 0.1091 | 0.027* | |
C17 | 0.1032 (3) | 0.2129 (4) | 0.02481 (11) | 0.0172 (7) | |
C18 | 0.3186 (3) | 0.1221 (5) | 0.05334 (11) | 0.0173 (7) | |
C19 | 0.4414 (3) | 0.1571 (5) | 0.03961 (11) | 0.0189 (7) | |
H19 | 0.4568 | 0.2063 | 0.0087 | 0.023* | |
C20 | 0.5413 (3) | 0.1203 (5) | 0.07102 (11) | 0.0188 (7) | |
H20 | 0.6246 | 0.1423 | 0.0610 | 0.023* | |
C21 | 0.5218 (3) | 0.0519 (5) | 0.11668 (11) | 0.0179 (7) | |
C22 | 0.3992 (3) | 0.0150 (5) | 0.12938 (11) | 0.0188 (7) | |
H22 | 0.3840 | −0.0340 | 0.1603 | 0.023* | |
C23 | 0.2979 (3) | 0.0474 (5) | 0.09839 (11) | 0.0201 (7) | |
H23 | 0.2151 | 0.0187 | 0.1079 | 0.024* | |
C24 | 0.6290 (3) | 0.0200 (5) | 0.15168 (12) | 0.0242 (8) | |
H24A | 0.7084 | 0.0220 | 0.1347 | 0.036* | |
H24B | 0.6189 | −0.1019 | 0.1672 | 0.036* | |
H24C | 0.6296 | 0.1190 | 0.1759 | 0.036* | |
H3 | 0.652 (3) | 0.552 (5) | 0.1350 (8) | 0.022 (10)* | |
H6 | 0.242 (3) | 0.153 (6) | −0.0118 (14) | 0.031 (11)* |
U11 | U22 | U33 | U12 | U13 | U23 | |
O1 | 0.0175 (13) | 0.0287 (14) | 0.0210 (11) | −0.0020 (10) | −0.0014 (9) | 0.0037 (10) |
O2 | 0.0236 (13) | 0.0349 (15) | 0.0206 (11) | 0.0030 (11) | −0.0063 (10) | 0.0061 (10) |
O3 | 0.0235 (14) | 0.0429 (16) | 0.0195 (12) | 0.0097 (12) | −0.0008 (10) | −0.0016 (11) |
O4 | 0.0288 (14) | 0.0353 (15) | 0.0212 (12) | −0.0007 (12) | −0.0093 (10) | 0.0011 (10) |
N1 | 0.0209 (15) | 0.0172 (15) | 0.0178 (13) | 0.0010 (12) | −0.0025 (11) | 0.0008 (10) |
N2 | 0.0189 (15) | 0.0212 (15) | 0.0179 (13) | −0.0001 (12) | 0.0012 (11) | −0.0003 (11) |
N3 | 0.0131 (14) | 0.0217 (15) | 0.0140 (12) | −0.0016 (11) | −0.0009 (10) | 0.0025 (10) |
N4 | 0.0220 (16) | 0.0199 (15) | 0.0200 (13) | −0.0018 (12) | −0.0040 (11) | 0.0017 (11) |
N5 | 0.0177 (15) | 0.0224 (15) | 0.0198 (13) | 0.0022 (12) | 0.0000 (11) | 0.0008 (11) |
N6 | 0.0172 (15) | 0.0254 (16) | 0.0147 (13) | 0.0025 (12) | −0.0024 (11) | 0.0008 (11) |
C1 | 0.0215 (18) | 0.0143 (16) | 0.0156 (14) | 0.0000 (13) | 0.0000 (12) | −0.0003 (12) |
C2 | 0.0172 (17) | 0.0174 (17) | 0.0236 (16) | 0.0017 (13) | −0.0046 (13) | −0.0006 (13) |
C3 | 0.0127 (17) | 0.0218 (18) | 0.0274 (17) | −0.0001 (14) | 0.0007 (13) | −0.0011 (14) |
C4 | 0.0199 (18) | 0.0232 (18) | 0.0203 (15) | −0.0021 (14) | 0.0024 (13) | −0.0003 (13) |
C5 | 0.0170 (17) | 0.0141 (16) | 0.0173 (14) | −0.0002 (13) | −0.0004 (12) | −0.0032 (11) |
C6 | 0.0116 (16) | 0.0171 (16) | 0.0173 (14) | 0.0012 (13) | −0.0018 (12) | −0.0027 (12) |
C7 | 0.0172 (17) | 0.0164 (16) | 0.0171 (14) | 0.0009 (13) | 0.0009 (12) | −0.0004 (12) |
C8 | 0.0167 (17) | 0.0159 (17) | 0.0229 (16) | 0.0000 (13) | 0.0002 (13) | 0.0001 (12) |
C9 | 0.0185 (17) | 0.0151 (16) | 0.0198 (15) | 0.0028 (13) | −0.0025 (12) | −0.0041 (12) |
C10 | 0.0198 (18) | 0.0206 (17) | 0.0149 (14) | 0.0042 (14) | 0.0019 (12) | 0.0002 (12) |
C11 | 0.0171 (17) | 0.0192 (17) | 0.0189 (15) | 0.0007 (14) | 0.0014 (12) | 0.0001 (13) |
C12 | 0.0232 (19) | 0.0211 (18) | 0.0227 (16) | −0.0005 (15) | −0.0064 (14) | −0.0014 (13) |
C13 | 0.0208 (18) | 0.0162 (16) | 0.0180 (15) | −0.0029 (14) | −0.0017 (12) | 0.0009 (12) |
C14 | 0.0195 (18) | 0.0172 (17) | 0.0265 (17) | −0.0050 (14) | −0.0046 (13) | 0.0044 (13) |
C15 | 0.0148 (17) | 0.0204 (18) | 0.0309 (18) | −0.0001 (14) | 0.0025 (14) | 0.0040 (14) |
C16 | 0.0219 (18) | 0.0226 (18) | 0.0222 (16) | 0.0002 (15) | 0.0038 (13) | 0.0028 (13) |
C17 | 0.0181 (17) | 0.0144 (16) | 0.0190 (15) | −0.0022 (13) | −0.0026 (12) | 0.0020 (12) |
C18 | 0.0205 (18) | 0.0145 (16) | 0.0168 (14) | 0.0019 (13) | −0.0017 (12) | −0.0019 (12) |
C19 | 0.0236 (18) | 0.0169 (17) | 0.0162 (14) | 0.0005 (14) | 0.0032 (12) | 0.0010 (12) |
C20 | 0.0124 (16) | 0.0218 (18) | 0.0223 (16) | 0.0000 (13) | 0.0024 (12) | −0.0021 (13) |
C21 | 0.0172 (17) | 0.0150 (16) | 0.0214 (15) | 0.0029 (13) | −0.0036 (13) | −0.0040 (12) |
C22 | 0.0186 (17) | 0.0214 (18) | 0.0165 (14) | 0.0020 (14) | 0.0011 (12) | 0.0030 (12) |
C23 | 0.0167 (17) | 0.0219 (18) | 0.0217 (15) | −0.0006 (14) | 0.0023 (13) | 0.0030 (13) |
C24 | 0.0235 (19) | 0.0256 (19) | 0.0232 (16) | 0.0044 (15) | −0.0049 (14) | −0.0019 (14) |
O1—N1 | 1.245 (3) | C9—C10 | 1.389 (5) |
O2—N1 | 1.230 (3) | C9—C12 | 1.507 (4) |
O3—N4 | 1.240 (4) | C10—C11 | 1.396 (4) |
O4—N4 | 1.236 (3) | C10—H10 | 0.9500 |
N1—C1 | 1.452 (4) | C11—H11 | 0.9500 |
N2—C4 | 1.335 (4) | C12—H12A | 0.9800 |
N2—C5 | 1.343 (4) | C12—H12B | 0.9800 |
N3—C5 | 1.359 (4) | C12—H12C | 0.9800 |
N3—C6 | 1.412 (4) | C13—C14 | 1.383 (5) |
N3—H3 | 0.867 (15) | C13—C17 | 1.428 (4) |
N4—C13 | 1.446 (4) | C14—C15 | 1.370 (5) |
N5—C16 | 1.324 (4) | C14—H14 | 0.9500 |
N5—C17 | 1.352 (4) | C15—C16 | 1.393 (5) |
N6—C17 | 1.345 (4) | C15—H15 | 0.9500 |
N6—C18 | 1.422 (4) | C16—H16 | 0.9500 |
N6—H6 | 0.88 (4) | C18—C23 | 1.390 (4) |
C1—C2 | 1.386 (5) | C18—C19 | 1.394 (4) |
C1—C5 | 1.422 (4) | C19—C20 | 1.390 (4) |
C2—C3 | 1.374 (4) | C19—H19 | 0.9500 |
C2—H2 | 0.9500 | C20—C21 | 1.387 (4) |
C3—C4 | 1.380 (4) | C20—H20 | 0.9500 |
C3—H3A | 0.9500 | C21—C22 | 1.388 (4) |
C4—H4 | 0.9500 | C21—C24 | 1.505 (4) |
C6—C11 | 1.393 (4) | C22—C23 | 1.388 (4) |
C6—C7 | 1.397 (4) | C22—H22 | 0.9500 |
C7—C8 | 1.377 (4) | C23—H23 | 0.9500 |
C7—H7 | 0.9500 | C24—H24A | 0.9800 |
C8—C9 | 1.396 (4) | C24—H24B | 0.9800 |
C8—H8 | 0.9500 | C24—H24C | 0.9800 |
O2—N1—O1 | 121.9 (3) | C10—C11—H11 | 120.5 |
O2—N1—C1 | 118.6 (3) | C9—C12—H12A | 109.5 |
O1—N1—C1 | 119.5 (2) | C9—C12—H12B | 109.5 |
C4—N2—C5 | 118.6 (3) | H12A—C12—H12B | 109.5 |
C5—N3—C6 | 130.6 (3) | C9—C12—H12C | 109.5 |
C5—N3—H3 | 115 (2) | H12A—C12—H12C | 109.5 |
C6—N3—H3 | 113 (2) | H12B—C12—H12C | 109.5 |
O4—N4—O3 | 121.9 (3) | C14—C13—C17 | 120.4 (3) |
O4—N4—C13 | 118.7 (3) | C14—C13—N4 | 117.1 (3) |
O3—N4—C13 | 119.4 (3) | C17—C13—N4 | 122.5 (3) |
C16—N5—C17 | 119.3 (3) | C15—C14—C13 | 119.7 (3) |
C17—N6—C18 | 129.0 (3) | C15—C14—H14 | 120.2 |
C17—N6—H6 | 113 (3) | C13—C14—H14 | 120.2 |
C18—N6—H6 | 118 (3) | C14—C15—C16 | 116.9 (3) |
C2—C1—C5 | 119.9 (3) | C14—C15—H15 | 121.5 |
C2—C1—N1 | 117.2 (3) | C16—C15—H15 | 121.5 |
C5—C1—N1 | 122.9 (3) | N5—C16—C15 | 125.0 (3) |
C3—C2—C1 | 119.2 (3) | N5—C16—H16 | 117.5 |
C3—C2—H2 | 120.4 | C15—C16—H16 | 117.5 |
C1—C2—H2 | 120.4 | N6—C17—N5 | 118.1 (3) |
C2—C3—C4 | 117.7 (3) | N6—C17—C13 | 123.2 (3) |
C2—C3—H3A | 121.2 | N5—C17—C13 | 118.6 (3) |
C4—C3—H3A | 121.2 | C23—C18—C19 | 119.2 (3) |
N2—C4—C3 | 124.8 (3) | C23—C18—N6 | 123.9 (3) |
N2—C4—H4 | 117.6 | C19—C18—N6 | 116.8 (3) |
C3—C4—H4 | 117.6 | C20—C19—C18 | 120.2 (3) |
N2—C5—N3 | 118.2 (3) | C20—C19—H19 | 119.9 |
N2—C5—C1 | 119.8 (3) | C18—C19—H19 | 119.9 |
N3—C5—C1 | 122.0 (3) | C21—C20—C19 | 121.3 (3) |
C11—C6—C7 | 119.0 (3) | C21—C20—H20 | 119.3 |
C11—C6—N3 | 125.7 (3) | C19—C20—H20 | 119.3 |
C7—C6—N3 | 115.4 (3) | C22—C21—C20 | 117.7 (3) |
C8—C7—C6 | 120.8 (3) | C22—C21—C24 | 120.7 (3) |
C8—C7—H7 | 119.6 | C20—C21—C24 | 121.6 (3) |
C6—C7—H7 | 119.6 | C21—C22—C23 | 122.1 (3) |
C7—C8—C9 | 121.5 (3) | C21—C22—H22 | 118.9 |
C7—C8—H8 | 119.3 | C23—C22—H22 | 118.9 |
C9—C8—H8 | 119.3 | C22—C23—C18 | 119.5 (3) |
C10—C9—C8 | 116.9 (3) | C22—C23—H23 | 120.2 |
C10—C9—C12 | 122.3 (3) | C18—C23—H23 | 120.2 |
C8—C9—C12 | 120.8 (3) | C21—C24—H24A | 109.5 |
C9—C10—C11 | 122.8 (3) | C21—C24—H24B | 109.5 |
C9—C10—H10 | 118.6 | H24A—C24—H24B | 109.5 |
C11—C10—H10 | 118.6 | C21—C24—H24C | 109.5 |
C6—C11—C10 | 118.9 (3) | H24A—C24—H24C | 109.5 |
C6—C11—H11 | 120.5 | H24B—C24—H24C | 109.5 |
O2—N1—C1—C2 | 0.8 (4) | O4—N4—C13—C14 | −1.7 (4) |
O1—N1—C1—C2 | −178.6 (3) | O3—N4—C13—C14 | 177.3 (3) |
O2—N1—C1—C5 | −179.0 (3) | O4—N4—C13—C17 | 179.9 (3) |
O1—N1—C1—C5 | 1.5 (5) | O3—N4—C13—C17 | −1.1 (5) |
C5—C1—C2—C3 | 0.3 (5) | C17—C13—C14—C15 | 1.4 (5) |
N1—C1—C2—C3 | −179.6 (3) | N4—C13—C14—C15 | −177.0 (3) |
C1—C2—C3—C4 | −0.1 (5) | C13—C14—C15—C16 | −1.5 (5) |
C5—N2—C4—C3 | −0.7 (5) | C17—N5—C16—C15 | 0.9 (5) |
C2—C3—C4—N2 | 0.3 (5) | C14—C15—C16—N5 | 0.4 (5) |
C4—N2—C5—N3 | −179.1 (3) | C18—N6—C17—N5 | 0.8 (5) |
C4—N2—C5—C1 | 0.8 (5) | C18—N6—C17—C13 | −179.7 (3) |
C6—N3—C5—N2 | −11.7 (5) | C16—N5—C17—N6 | 178.6 (3) |
C6—N3—C5—C1 | 168.4 (3) | C16—N5—C17—C13 | −0.9 (5) |
C2—C1—C5—N2 | −0.6 (5) | C14—C13—C17—N6 | −179.7 (3) |
N1—C1—C5—N2 | 179.2 (3) | N4—C13—C17—N6 | −1.4 (5) |
C2—C1—C5—N3 | 179.3 (3) | C14—C13—C17—N5 | −0.2 (5) |
N1—C1—C5—N3 | −0.8 (5) | N4—C13—C17—N5 | 178.1 (3) |
C5—N3—C6—C11 | 22.3 (5) | C17—N6—C18—C23 | 35.9 (5) |
C5—N3—C6—C7 | −158.4 (3) | C17—N6—C18—C19 | −148.1 (3) |
C11—C6—C7—C8 | −2.8 (5) | C23—C18—C19—C20 | −1.0 (5) |
N3—C6—C7—C8 | 177.8 (3) | N6—C18—C19—C20 | −177.3 (3) |
C6—C7—C8—C9 | −0.5 (5) | C18—C19—C20—C21 | −1.3 (5) |
C7—C8—C9—C10 | 3.1 (5) | C19—C20—C21—C22 | 2.3 (5) |
C7—C8—C9—C12 | −176.3 (3) | C19—C20—C21—C24 | −177.1 (3) |
C8—C9—C10—C11 | −2.6 (5) | C20—C21—C22—C23 | −1.1 (5) |
C12—C9—C10—C11 | 176.8 (3) | C24—C21—C22—C23 | 178.3 (3) |
C7—C6—C11—C10 | 3.2 (5) | C21—C22—C23—C18 | −1.1 (5) |
N3—C6—C11—C10 | −177.4 (3) | C19—C18—C23—C22 | 2.2 (5) |
C9—C10—C11—C6 | −0.6 (5) | N6—C18—C23—C22 | 178.1 (3) |
Cg1 is the centroid of the C6–C11 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···O1 | 0.87 (3) | 1.94 (3) | 2.630 (3) | 136 (3) |
N6—H6···O3 | 0.88 (4) | 1.93 (4) | 2.639 (3) | 137 (3) |
N3—H3···N1 | 0.87 (3) | 2.55 (3) | 2.932 (4) | 108 (2) |
N6—H6···N4 | 0.88 (4) | 2.54 (4) | 2.942 (4) | 109 (2) |
C14—H14···O2i | 0.95 | 2.39 | 3.199 (4) | 143 |
C4—H4···Cg1ii | 0.95 | 2.90 | 3.604 (4) | 132 |
C12—H12b···Cg1iii | 0.98 | 2.80 | 3.654 (4) | 146 |
Symmetry codes: (i) −x, −y+1, −z; (ii) −x+1, y−1/2, −z+1/2; (iii) −x+2, y+1/2, −z+1/2. |
Experimental details
Crystal data | |
Chemical formula | C12H11N3O2 |
Mr | 229.24 |
Crystal system, space group | Monoclinic, P21/c |
Temperature (K) | 100 |
a, b, c (Å) | 10.6557 (12), 7.1415 (8), 27.958 (3) |
β (°) | 91.310 (2) |
V (Å3) | 2127.0 (4) |
Z | 8 |
Radiation type | Mo Kα |
µ (mm−1) | 0.10 |
Crystal size (mm) | 0.35 × 0.35 × 0.05 |
Data collection | |
Diffractometer | Bruker SMART APEX diffractometer |
Absorption correction | – |
No. of measured, independent and observed [I > 2σ(I)] reflections | 13178, 4804, 3344 |
Rint | 0.045 |
(sin θ/λ)max (Å−1) | 0.650 |
Refinement | |
R[F2 > 2σ(F2)], wR(F2), S | 0.048, 0.146, 1.04 |
No. of reflections | 4804 |
No. of parameters | 317 |
No. of restraints | 2 |
H-atom treatment | H atoms treated by a mixture of independent and constrained refinement |
Δρmax, Δρmin (e Å−3) | 0.30, −0.28 |
Computer programs: APEX2 (Bruker, 2009), SAINT (Bruker, 2009), SHELXS97 (Sheldrick, 2008), SHELXL97 (Sheldrick, 2008), ORTEP-3 (Farrugia, 1997), DIAMOND (Brandenburg, 2006) and Qmol (Gans & Shalloway, 2001), publCIF (Westrip, 2010).
Cg1 is the centroid of the C6–C11 ring. |
D—H···A | D—H | H···A | D···A | D—H···A |
N3—H3···O1 | 0.87 (3) | 1.94 (3) | 2.630 (3) | 136 (3) |
N6—H6···O3 | 0.88 (4) | 1.93 (4) | 2.639 (3) | 137 (3) |
N3—H3···N1 | 0.87 (3) | 2.55 (3) | 2.932 (4) | 108 (2) |
N6—H6···N4 | 0.88 (4) | 2.54 (4) | 2.942 (4) | 109 (2) |
C14—H14···O2i | 0.95 | 2.39 | 3.199 (4) | 143 |
C4—H4···Cg1ii | 0.95 | 2.90 | 3.604 (4) | 132 |
C12—H12b···Cg1iii | 0.98 | 2.80 | 3.654 (4) | 146 |
Symmetry codes: (i) −x, −y+1, −z; (ii) −x+1, y−1/2, −z+1/2; (iii) −x+2, y+1/2, −z+1/2. |
Footnotes
1Additional correspondence author, e-mail: zana@um.edu.my.
Acknowledgements
ZA thanks the Ministry of Higher Education, Malaysia, for research grants (FP047/2008 C and FP001/2010 A). The authors are also grateful to the University of Malaya for support of the crystallographic facility.
References
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This is an open-access article distributed under the terms of the Creative Commons Attribution (CC-BY) Licence, which permits unrestricted use, distribution, and reproduction in any medium, provided the original authors and source are cited.
Studies of pyridine and pyrimidine derivatives related to the title compound are of interest owing to their putative fluorescence properties (Kawai et al. 2001; Abdullah, 2005). As a continuation of structural studies on this class of N-heterocycles (Badaruddin et al., 2009; Fairuz et al., 2010), the title compound, (I), was investigated.
Two independent molecules comprise the asymmetric unit of (I), Figs 1 and 2. While the geometric parameters are in close agreement [r.m.s. deviation of bond distances and angles = 0.0080 Å and 0.849 °, respectively], these differ non-trivially in their conformations. So, while the pyridine groups are virtually super-imposable, the benzene rings are not, Fig. 3. This difference is quantified in the dihedral angles formed between the pyridine and benzene rings, i.e. N2,C1–C5/C6–C11 = 17.42 (16) ° and N5,C13–C17/C18–C23 = 34.64 (16) °. These indicate that there are also twists in the molecules as evidenced by the C6–N3–C5–N2 torsion angle of -11.7 (5) ° and, especially, the C5–N3–C6–C11 torsion angle of 22.3 (5) °. The equivalent torsion angles for the second independent molecule of C18–N6–C17–N5 = 0.8 (5) ° and C17–N6–C18–C23 = 35.9 (5) ° also highlight the differences between the molecules. The nitro groups are co-planar with the pyridine rings to which they are connected as indicated by the O1–N1–C1–C5 and O3–N4–C13–C17 torsion angles of 1.5 (5) and -1.1 (5) °, respectively. Close intramolecular N–H···O and C–H···N interactions are noted, Table 1.
The most notable intermolecular interactions in the crystal structure are of the type C–H···O [which connect the molecules comprising the asymmetric unit], C–H···π and π–π [ring centroid(N2,C1–C5)···centroid(C18–C23) = 3.6442 (19) Å and ring centroid(N5,C13–C17)···centroid(N5,C13–C17)i = 3.722 (2) Å for i: -x, 1 - y, -z] contacts. These serve to connect molecules into the three-dimensional structure, Fig. 4.